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5700 Commits

Author SHA1 Message Date
Dmitry Kalinkin
2b9f8eb0a2
graphia: mark as broken on darwin 2022-01-14 03:38:54 -05:00
Dmitry Kalinkin
69d78f174a
gplates: mark as broken on darwin 2022-01-14 03:33:15 -05:00
Shamrock Lee
cc5ffb3de4 root: Explicit specify -Dtmva=ON 2022-01-14 14:19:33 +08:00
Shamrock Lee
336cc50b1f root: add openblas and lapack into buildInputs for TMVA 2022-01-14 14:15:22 +08:00
Dmitry Kalinkin
bc59ba15b6
Merge pull request #154973 from evils/kicad-6.0.1 
kicad: 6.0.0 -> 6.0.1
 2022-01-13 22:17:24 -05:00
Evils
1d81731642 kicad: 6.0.0 -> 6.0.1 2022-01-14 02:44:34 +01:00
Evils
d98b76cf5b kicad-unstable: 2021-12-23 -> 2022-01-13 
PCM is no longer optional
  removed in 211820a689a618ac5bcbea19a8c58d345ce25ddb

-unknown suffix is back
  3e373da8c25048205dfa2278079555a522fd2e62
 2022-01-14 02:44:12 +01:00
Fabian Affolter
32003c3051 toil: 5.4.0 -> 5.6.0 2022-01-13 21:37:08 +01:00
Fabian Affolter
480999d914
Merge pull request #154781 from fabaff/bump-cwltool 
cwltool: 3.1.20211104071347 -> 3.1.20211107152837
 2022-01-13 00:25:01 +01:00
R. RyanTM
cf340a9dae
finalfusion-utils: 0.13.2 -> 0.14.1 
(#154470)
 2022-01-12 23:42:03 +01:00
Mauricio Collares
c3b215f678 lean: 3.37.0 -> 3.38.0 2022-01-12 16:25:20 -03:00
Fabian Affolter
1a549598b4 cwltool: 3.1.20211104071347 -> 3.1.20211107152837 2022-01-12 18:00:43 +01:00
1000teslas
a4b6785de9 isabelle: patch jni libs for nitpick 2022-01-11 21:09:27 +11:00
R. Ryantm
a389c191b4 calc: 2.14.0.13 -> 2.14.0.14 2022-01-11 02:54:44 +00:00
1000teslas
d9d30199ec isabelle: patch zipperposition binary 2022-01-11 11:55:38 +11:00
Phillip Seeber
afdfec504f cp2k: 8.2.0 -> 9.1.0 2022-01-10 13:54:46 +01:00
Bernardo Meurer
95be2a7068
Merge pull request #154084 from NickCao/astrolog 
astrolog: fix cross compilation
 2022-01-09 18:05:11 +00:00
Fabian Affolter
8aea087b19
Merge pull request #154077 from fabaff/bump-nextinspace 
nextinspace: 1.0.6 -> 2.0.3
 2022-01-09 18:57:30 +01:00
Nick Cao
bc547213eb
astrolog: fix cross compilation 2022-01-09 09:22:51 +08:00
Fabian Affolter
b9c6bff4f0 nextinspace: 1.0.6 -> 2.0.3 2022-01-09 01:17:23 +01:00
Renaud
3e90bc0c91
Merge pull request #153014 from numinit/add-klee 
klee: init at 2.2
 2022-01-09 00:16:19 +01:00
Morgan Jones
5f8f72c10c klee: init at 2.2 2022-01-08 15:49:07 -07:00
R. RyanTM
c5e9e73029
gmsh: 4.9.0 -> 4.9.2 
* gmsh: 4.9.0 -> 4.9.2 (#152872)

* gmsh: use https

Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
 2022-01-08 01:18:15 +01:00
Mauricio Collares
81d4c28748 lean: 3.36.0 -> 3.37.0 2022-01-07 16:51:55 -03:00
Lassulus
27ff8d72f5
Merge pull request #152326 from kmein/feature/astrolog 
astrolog: switches for using optional ephemeris/atlas files
 2022-01-04 23:10:50 +01:00
Mauricio Collares
b790f8ce31 lean: 3.35.1 -> 3.36.0 2022-01-04 10:35:17 -03:00
Gabriel Ebner
adf7f03d3b
Merge pull request #153337 from collares/lean-3.35.1 
lean: 3.35.0 -> 3.35.1
 2022-01-03 16:40:00 +01:00
Mauricio Collares
5b3eac3130 lean: 3.35.0 -> 3.35.1 2022-01-03 11:42:18 -03:00
markuskowa
09819d7eff
Merge pull request #152801 from r-ryantm/auto-update/messer-slim 
messer-slim: 3.6 -> 3.7
 2022-01-03 10:50:18 +01:00
Gabriel Ebner
7fb27d1c22
Merge pull request #153190 from jvanbruegge/isabelle-vampire 
isabelle: Use vampire and eprover from nixpkgs
 2022-01-02 22:56:09 +01:00
Jan van Brügge
c601134af8
isabelle: Use vampire and eprover from nixpkgs 
It also removes the unused perl input
 2022-01-02 20:53:33 +01:00
Jan van Brügge
f79b811f2d
eprover: Add option to enable LFHOL reasoning 
Using eprover as automated theorem prover for sledgehammer requires this
option.
 2022-01-02 20:53:32 +01:00
Sergei Trofimovich
369d7bb4ca z3: 4.8.12 -> 4.8.14 
While at it added trivial updater plumbing.
 2022-01-02 12:45:59 -06:00
R. RyanTM
e4992cdd65
stacks: 2.59 -> 2.60 
(#149101)
 2022-01-02 19:23:58 +01:00
R. RyanTM
0bf7411211
libpoly: 0.1.10 -> 0.1.11 
* libpoly: 0.1.10 -> 0.1.11 (#144410)

* libpoly: remove unneeded postPatch

(fixed upstream by now)

Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
 2022-01-02 17:38:00 +01:00
R. RyanTM
caa56925f9
yices: 2.6.2 -> 2.6.4 
(#143311)
 2022-01-02 10:15:42 +01:00
Martin Weinelt
b8149a7f04
Merge pull request #152907 from dotlambda/python2-remove 2022-01-02 01:33:57 +01:00
Jan van Brügge
b54e5a841b
vampire: 4.5.1 -> 4.6.1 2022-01-01 22:13:11 +01:00
Sandro
d8028c8e06
Merge pull request #147367 from TilCreator/package-inav-configurator 2022-01-01 14:05:44 +01:00
Gabriel Ebner
edac0bea9d
Merge pull request #152921 from jvanbruegge/isabelle-2021-1 
isabelle: 2021 -> 2021-1
 2022-01-01 14:00:57 +01:00
Bobby Rong
13e59225f7
Merge pull request #149135 from r-ryantm/auto-update/finalfusion-utils 
finalfusion-utils: 0.13.0 -> 0.13.2
 2022-01-01 20:45:37 +08:00
R. Ryantm
58a45d8020
finalfusion-utils: 0.13.0 -> 0.13.2 2022-01-01 20:18:54 +08:00
Martin Weinelt
4beaf5301d
python3Packages.xenomapper: move to top-level 2022-01-01 02:09:11 +01:00
Martin Weinelt
39801adb66
Merge pull request #150333 from piegamesde/update-streamlit 2021-12-31 16:53:14 +01:00
piegames
9ddd00301c pythonPackages.streamlit: 0.50.2 -> 1.2.0 2021-12-31 15:17:26 +01:00
Ben Siraphob
efbd6bf6e6
Merge pull request #152932 from r-ryantm/auto-update/calc 
calc: 2.14.0.8 -> 2.14.0.13
 2021-12-31 20:39:26 +07:00
R. Ryantm
e3271d42ce calc: 2.14.0.8 -> 2.14.0.13 2021-12-31 12:45:14 +00:00
Jan van Brügge
4b9c0cb005
isabelle: 2021 -> 2021-1 2021-12-31 13:01:41 +01:00
Jan van Brügge
d3e2cf4314
verit: 2016 -> 2021.06.2 2021-12-31 13:00:43 +01:00
Gabriel Ebner
5fcfc1d34a
Merge pull request #152605 from j0hax/speedcrunch-fixups 
Speedcrunch fixups
 2021-12-31 10:36:06 +01:00
Johannes Arnold
e3d982dfee speedcrunch: 0.12.0 -> unstable-2021-10-09 2021-12-31 10:04:07 +01:00
Bobby Rong
b8ceb2637a
Merge pull request #152811 from r-ryantm/auto-update/jmol 
jmol: 14.32.2 -> 14.32.6
 2021-12-31 08:49:50 +08:00
Maximilian Bosch
8ac7f8d217
Merge pull request #152106 from Ma27/bump-stellarium 
stellarium: 0.21.2 -> 0.21.3
 2021-12-30 23:15:08 +01:00
R. Ryantm
edceb1ed24 jmol: 14.32.2 -> 14.32.6 2021-12-30 20:51:37 +00:00
R. Ryantm
37d2f5cbb4 messer-slim: 3.6 -> 3.7 2021-12-30 20:32:56 +00:00
7c6f434c
3c5bd4a74c
Merge pull request #152409 from collares/singular-maxprocess 
singular: backport patch to fix docbuilding with >= 64 cpus
 2021-12-30 16:35:18 +00:00
Johannes Arnold
5ca1d45da3 speedcrunch: use proper fetcher 2021-12-29 17:52:11 +01:00
Ben Siraphob
39a0a70d29
treewide: fix homepages with permanent redirect to https 2021-12-29 22:06:47 +07:00
Kierán Meinhardt
b4b9096d66 astrolog: switches for using optional ephemeris/atlas files 2021-12-28 13:50:26 +01:00
Rasmus Thomsen
83e5da9238
bada-bib: init at 0.3.0 2021-12-28 12:40:39 +01:00
Mauricio Collares
ec0c4a001f singular: backport patch to fix docbuilding with >= 64 cpus 2021-12-27 22:29:15 -03:00
Dmitry Kalinkin
33d85a8e24
Merge pull request #152149 from evils/kicad 
KiCad: 5.1.12 -> 6.0.0; and a bunch of cleanup
 2021-12-27 14:11:05 -05:00
Bobby Rong
4fdcad0d6b
Merge pull request #149379 from r-ryantm/auto-update/minimap2 
minimap2: 2.22 -> 2.23
 2021-12-27 18:05:04 +08:00
Evils
2753f7c8e1 kicad: disable tests 
due to an intermittent failure of the qa_pcbnew test
  https://gitlab.com/kicad/code/kicad/-/issues/9888
 2021-12-27 05:45:38 +01:00
Bobby Rong
d308cb2570
Merge pull request #152250 from broke/master 
elmerfem: 8.4 -> 9.0
 2021-12-27 11:33:43 +08:00
Dmitry Kalinkin
c7be038ad1
Merge pull request #152186 from veprbl/pr/root_rootcint_fix 
root: fix installation of bin/rootcint and bin/genreflex
 2021-12-26 18:30:44 -05:00
Evils
83e6fe5557 kicad: remove unused options 
the asserts are in nixos-unstable by now

and use the build_qa flag to disable building unused tests
 2021-12-26 22:07:02 +01:00
Evils
e54357a7d2 kicad: KICAD_SPICE build option defaults to ON 
and has apparently done so since it was added...
 2021-12-26 22:07:02 +01:00
Evils
f7da08bb19 kicad.updateScript: full shellcheck 2021-12-26 22:07:02 +01:00
Evils
b3f0da107e kicad: remove the separate i18n stuff 
i18n is now in the kicad source in both stable and unstable
  behind the withI18n flag which is disabled by default
 2021-12-26 22:07:02 +01:00
Evils
818894d6a5 kicad-unstable: 6.0.0-rc1 -> 2021-12-23 2021-12-26 22:07:02 +01:00
Evils
78f0769183 kicad: 5.1.12 -> 6.0.0 
remove old build conditionals
  the old wrapper env vars are no longer applicable to 6.0.0
  scripting is no longer optional
    though wxPython is still an optional dependency?

add withI18n build option to kicad.base
  i18n was moved to the kicad source, and is disabled by default
    withI18n takes the same default

add withPCM option
  to allow disabling building the Plugin and Content Manager

remove the withOCE option
  the build option was removed in upstream commit:
    1c5c052301b607a0cf8b8ed6681f1db1622a865b

and unconditionally use wxGTK31-gtk3 and wxPython
  the pcb editor's python terminal seems to work with these versions
 2021-12-26 22:07:02 +01:00
Evils
b7f9203059 kicad.updateScript: account for the bad 6.9.9 tag 2021-12-26 22:07:02 +01:00
Doron Behar
ac048e82e3
Merge pull request #147826 from doronbehar/pkg/yacas 
yacas: Fix gui and jupyter build
 2021-12-26 21:39:27 +02:00
Gunnar Nitsche
cc690c83f4 elmerfem: 8.4 -> 9.0 2021-12-26 20:29:41 +01:00
Dmitry Kalinkin
d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex 2021-12-26 00:07:49 -05:00
Bobby Rong
0d0f94d97c
Merge pull request #152120 from r-ryantm/auto-update/marvin 
marvin: 21.18.0 -> 21.20.0
 2021-12-26 10:27:36 +08:00
R. Ryantm
c89a5a2e6a marvin: 21.18.0 -> 21.20.0 2021-12-25 18:03:44 +00:00
Maximilian Bosch
0b9df207a8
stellarium: 0.21.2 -> 0.21.3 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.3
 2021-12-25 16:54:34 +01:00
github-actions[bot]
af639a3c3c
Merge master into staging-next 2021-12-25 06:01:04 +00:00
Bobby Rong
651982b2ed
Merge pull request #150150 from r-ryantm/auto-update/gama 
gama: 2.14 -> 2.16
 2021-12-25 12:34:43 +08:00
github-actions[bot]
f04946ad25
Merge master into staging-next 2021-12-24 18:01:11 +00:00
markuskowa
2738cb2157
Merge pull request #151594 from FliegendeWurst/geogebra-680 
geogebra: 5-0-662-0 -> 5-0-680-0
 2021-12-24 16:16:02 +01:00
github-actions[bot]
b7f2d2da61
Merge master into staging-next 2021-12-24 00:01:44 +00:00
Felix Buehler
e578d45c10 diamond: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler
865eee2b26 kssd: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler
2f4a86e7d7 messer-slim: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler
e1bd890fb0 niftyseg: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler
cb448459d0 potassco: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
github-actions[bot]
5e2c1acfa3
Merge master into staging-next 2021-12-22 18:01:00 +00:00
Justin Bedo
fa6244b712
picard-tools: 2.26.6 -> 2.26.9 2021-12-22 22:20:36 +11:00
7c6f434c
080d8f0d72
Merge pull request #151635 from collares/sage-fonttools 
[staging-next] sage: assume fonttools DeprecationWarnings are expected for now
 2021-12-22 07:50:33 +00:00
Mauricio Collares
93f9a9c36d sage: assume fonttools DeprecationWarnings are expected for now 2021-12-21 23:10:07 -03:00
github-actions[bot]
39d035c4cf
Merge master into staging-next 2021-12-22 00:01:35 +00:00
Kierán Meinhardt
4bff3d7346 astrolog: init at 7.30 2021-12-21 22:24:48 +01:00
github-actions[bot]
a7f62c75af
Merge master into staging-next 2021-12-21 18:01:15 +00:00
FliegendeWurst
c080917139 geogebra: 5-0-662-0 -> 5-0-680-0 2021-12-21 17:09:50 +01:00
7c6f434c
d5db292192
Merge pull request #151424 from collares/sage-matplotlib 
[staging-next] sage: import matplotlib and sphinx update patches
 2021-12-21 12:55:50 +00:00
Felix Buehler
f4931dfaee ekrhyper: refactor 2021-12-21 12:44:01 +01:00
Dmitry Kalinkin
ac40a963c9
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/applications/editors/vim/common.nix
	pkgs/development/python-modules/jellyfin-apiclient-python/default.nix
	pkgs/development/python-modules/pymavlink/default.nix
 2021-12-20 12:09:28 -05:00
Mauricio Collares
3eaca311d4 sage: import matplotlib and sphinx update patches 2021-12-20 10:09:35 -03:00
Doron Behar
e6647de754
Merge pull request #151281 from r-ryantm/auto-update/qalculate-gtk 2021-12-19 22:40:43 +02:00
Dmitry Kalinkin
bbea48728b
Merge pull request #151151 from veprbl/pr/libcxx_no_apple_availability 
llvmPackages.libcxx: unset _LIBCPP_USE_AVAILABILITY_APPLE
 2021-12-19 11:42:28 -05:00
Gabriel Ebner
a3bbbe08bd
Merge pull request #151328 from Kha/elan-lean-cc 
elan: set LEAN_CC to stdenv cc
 2021-12-19 17:39:28 +01:00
Sebastian Ullrich
b20024dd3a elan: set LEAN_CC to stdenv cc 
This ensures that `leanc` understands cc-wrapper vars such as `NIX_LDFLAGS`
 2021-12-19 17:27:10 +01:00
Bobby Rong
856672f2ce
Merge pull request #151249 from lopsided98/mavproxy-update 
mavproxy: 1.8.45 -> 1.8.46
 2021-12-19 22:21:30 +08:00
R. Ryantm
57ff8c2e36 qalculate-gtk: 3.21.0 -> 3.22.0 2021-12-19 07:38:29 +00:00
github-actions[bot]
2e447628d8
Merge master into staging-next 2021-12-19 06:01:16 +00:00
qbg
24111d6a7a
mathematica: 12.3.1 -> 13.0.0 (#151213) 
https://wolfram.com/mathematica/quick-revision-history.html#v130
 2021-12-18 23:24:27 -05:00
R. Ryantm
d14a6ef13e mavproxy: 1.8.45 -> 1.8.46 2021-12-18 20:04:55 -05:00
Dmitry Kalinkin
da8f155b2a
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/development/python-modules/sphinxext-opengraph/default.nix
 2021-12-18 10:18:14 -05:00
Dmitry Kalinkin
e1aaaa90fe
llvmPackages.libcxx: unset _LIBCPP_USE_AVAILABILITY_APPLE 2021-12-18 10:09:25 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc 
boinc: 7.14.2 -> 7.18.1
 2021-12-18 21:32:22 +08:00
github-actions[bot]
2749f6983a
Merge master into staging-next 2021-12-17 06:01:26 +00:00
Dmitry Kalinkin
50a4c52747
Merge pull request #147648 from veprbl/pr/mxnet_1_8_0 
mxnet: 1.6.0 -> 1.8.0, enable on darwin
 2021-12-16 22:37:03 -05:00
mucaho
1509f463a0 clingcon: 3.3.0 -> 5.0.0 2021-12-16 20:28:19 +01:00
github-actions[bot]
9c7ec75d6b
Merge master into staging-next 2021-12-16 06:01:09 +00:00
Silvan Mosberger
e30a4fa4bd
Merge pull request #149404 from Infinisil/remove-scyther 2021-12-16 01:56:39 +01:00
Dmitry Kalinkin
a7a3675563
gromacs: fix build on darwin 2021-12-15 15:22:10 -05:00
sternenseemann
d860ba7f09 Merge remote-tracking branch 'origin/master' into staging-next 2021-12-15 11:30:31 +01:00
Justin Bedő
f6e14b6ada
Merge pull request #150628 from jbedo/subread 
subread: init 2.0.3
 2021-12-15 13:46:45 +11:00
github-actions[bot]
0242879f3f
Merge master into staging-next 2021-12-14 12:01:17 +00:00
Bobby Rong
e5a6bba62b
Merge pull request #150447 from r-ryantm/auto-update/seaview 
seaview: 5.0.4 -> 5.0.5
 2021-12-14 18:38:55 +08:00
7c6f434c
b862304c67
Merge pull request #150597 from collares/sage-arb 
arb: 2.20.0 -> 2.21.1
 2021-12-14 08:56:42 +00:00
Justin Bedo
6a1f4a51eb
subread: init 2.0.3 2021-12-14 13:30:23 +11:00
github-actions[bot]
784572e7cf
Merge master into staging-next 2021-12-13 18:01:18 +00:00
Mauricio Collares
9b35049770 sage: import arb 2.21.0 test fixes 2021-12-13 11:16:33 -03:00
Dmitry Kalinkin
8f0a587d4a
z3: fix darwin build 2021-12-13 07:42:47 -05:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink 
rink: 0.6.1 -> 0.6.2
 2021-12-13 14:40:57 +02:00
Martin Weinelt
423119b70b
Merge branch 'master' into staging-next 2021-12-13 12:20:07 +01:00
Felix Buehler
4cc23f2b1e why3.withProvers: add dontUnpack 2021-12-12 20:33:14 +01:00
R. Ryantm
d4a5bdc264 seaview: 5.0.4 -> 5.0.5 2021-12-12 15:59:16 +00:00
Dmitry Kalinkin
1dcb22acc9
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/development/python-modules/gdown/default.nix
 2021-12-12 00:00:04 -05:00
Mario Rodas
e09a539ccb
Merge pull request #150166 from r-ryantm/auto-update/gmsh 
gmsh: 4.8.4 -> 4.9.0
 2021-12-11 22:52:19 -05:00
Ryan Mulligan
9e570d0034
Merge pull request #150031 from r-ryantm/auto-update/jmol 
jmol: 14.31.49 -> 14.32.2
 2021-12-11 16:23:05 -08:00
Dmitry Kalinkin
b6b59334bb
Merge branch 'master' into staging-next 
Conflicts:
	pkgs/development/python-modules/celery/default.nix
	pkgs/development/python-modules/kombu/default.nix
 2021-12-11 13:15:49 -05:00
Jörg Thalheim
453b06c677
Merge pull request #150121 from markuskowa/fix-cp2k 
cp2k: make elpa optional
 2021-12-11 14:04:41 +00:00
Jörg Thalheim
4e5d03cd21
Merge pull request #150111 from r-ryantm/auto-update/gretl 
gretl: 2021b -> 2021d
 2021-12-11 13:34:40 +00:00
Jörg Thalheim
953bdd43bf
Merge pull request #150124 from r-ryantm/auto-update/gwyddion 
gwyddion: 2.59 -> 2.60
 2021-12-11 13:31:59 +00:00
Jörg Thalheim
2a322411ff
Merge pull request #150217 from r-ryantm/auto-update/cryptoverif 
cryptoverif: 2.04 -> 2.05
 2021-12-11 12:53:42 +00:00
R. Ryantm
50554a43cf cryptoverif: 2.04 -> 2.05 2021-12-11 10:05:51 +00:00
R. Ryantm
2d939d3262 gmsh: 4.8.4 -> 4.9.0 2021-12-11 01:08:58 +00:00
R. Ryantm
baf80d066b gama: 2.14 -> 2.16 2021-12-10 22:15:01 +00:00
R. Ryantm
7bbf6a048b gwyddion: 2.59 -> 2.60 2021-12-10 20:19:55 +00:00
Markus Kowalewski
6d1f54dc5d
cp2k: make elpa optional 2021-12-10 20:56:21 +01:00
R. Ryantm
7abc2f38b4 gretl: 2021b -> 2021d 2021-12-10 19:06:52 +00:00
github-actions[bot]
cc51bd619c
Merge master into staging-next 2021-12-10 18:01:06 +00:00
R. Ryantm
1ceac72697 gurobi: 9.1.2 -> 9.5.0 2021-12-10 15:29:40 +00:00
Ryan Mulligan
76d64cf517
Merge pull request #149908 from r-ryantm/auto-update/marvin 
marvin: 21.9.0 -> 21.18.0
 2021-12-10 06:36:30 -08:00
R. Ryantm
a1fa86e691 jmol: 14.31.49 -> 14.32.2 2021-12-10 10:13:57 +00:00
github-actions[bot]
b2a2a5759e
Merge master into staging-next 2021-12-10 06:01:17 +00:00
Maximilian Bosch
c87f93843c
Merge pull request #148905 from r-ryantm/auto-update/calc 
calc: 2.13.0.1 -> 2.14.0.8
 2021-12-10 01:22:16 +01:00
github-actions[bot]
92aabc6576
Merge master into staging-next 2021-12-10 00:01:53 +00:00
7c6f434c
26b52ea6a6
Merge pull request #149596 from r-ryantm/auto-update/polymake 
polymake: 4.4 -> 4.5
 2021-12-09 22:48:21 +00:00
R. Ryantm
806d3e25cd marvin: 21.9.0 -> 21.18.0 2021-12-09 19:20:04 +00:00
github-actions[bot]
379c22dbb3
Merge master into staging-next 2021-12-09 18:01:06 +00:00
Vincent Laporte
a2dc97cd5c proverif: 2.03 → 2.04 2021-12-09 17:45:15 +01:00
Vincent Laporte
a160defe64 coq_8_15: init at 8.15+rc1 2021-12-09 15:46:06 +01:00
Alyssa Ross
c9a581b05f
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
CONFLICT (rename/add): Rename pkgs/development/python-modules/jsonwatch/default.nix->pkgs/tools/misc/jsonwatch/default.nix in nixpkgs/master.  Added pkgs/tools/misc/jsonwatch/default.nix in HEAD
 2021-12-09 01:43:58 +00:00
Jörg Thalheim
2808a3bc74
Merge pull request #149465 from r-ryantm/auto-update/openmvg 
openmvg: 1.6 -> 2.0
 2021-12-08 15:15:48 +00:00
R. Ryantm
5a5f052be8 polymake: 4.4 -> 4.5 2021-12-08 10:49:07 +00:00
Alyssa Ross
16fb150e03
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	pkgs/development/libraries/libunwind/default.nix
 2021-12-07 23:56:16 +00:00
R. Ryantm
3112fe2ace openmvg: 1.6 -> 2.0 2021-12-07 20:17:43 +00:00
Silvan Mosberger
55af3549a3 scyther: remove since it only supports Python 2 
See https://github.com/cascremers/scyther/issues/20
 2021-12-07 17:58:03 +01:00
R. Ryantm
d337b164d6 minimap2: 2.22 -> 2.23 2021-12-07 15:04:36 +00:00
R. Ryantm
817561795f logisim-evolution: 3.7.1 -> 3.7.2 2021-12-07 12:21:37 +00:00
Jonathan Ringer
9dd8bffe92
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/aiocron/default.nix
 2021-12-07 00:11:07 -08:00
Artturi
84bd0d6b7b
Merge pull request #147023 from wackbyte/fix-groove 
groove: 5.7.4 -> 5.8.1 and jre -> jre8
 2021-12-07 05:12:15 +02:00
R. Ryantm
5517f74759 rink: 0.6.1 -> 0.6.2 2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output 2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1 2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer 2021-12-06 23:56:05 +01:00
github-actions[bot]
ffbac7335b
Merge master into staging-next 2021-12-06 18:01:23 +00:00
7c6f434c
67f094f56b
Merge pull request #149043 from 7c6f434c/golly-update 
golly: 3.3 -> 4.1
 2021-12-06 16:17:35 +00:00
Michael Raskin
65b2df8b45 golly: 3.3 -> 4.1 2021-12-06 16:27:09 +01:00
R. Ryantm
d5368e3bdb clingo: 5.5.0 -> 5.5.1 2021-12-06 09:34:25 +00:00
R. Ryantm
6c000f4835 calc: 2.13.0.1 -> 2.14.0.8 2021-12-06 07:03:08 +00:00
github-actions[bot]
5a1288f93b
Merge master into staging-next 2021-12-05 00:01:53 +00:00
Justin Bedő
711ef56370
Merge pull request #148514 from jbedo/picard 
picard-tools: 2.26.4 -> 2.26.6
 2021-12-05 06:56:25 +11:00
github-actions[bot]
67691cf506
Merge master into staging-next 2021-12-04 00:01:30 +00:00
markuskowa
660a7744c6
Merge pull request #148303 from markuskowa/add-elpa 
elpa: init at 2021.05.002_bugfix
 2021-12-03 22:52:58 +01:00
markuskowa
0016232876
Merge pull request #148350 from jbedo/genmap 
genmap: init 1.3.0
 2021-12-03 21:55:44 +01:00
Justin Bedo
17e3b75414
picard-tools: 2.26.4 -> 2.26.6 2021-12-04 07:51:31 +11:00
Justin Bedo
1a768ef4da
genmap: init 1.3.0 2021-12-04 06:51:16 +11:00
Jonathan Ringer
9fcf9be974
Merge remote-tracking branch 'origin/staging' into staging-next 
Conflicts:
	pkgs/development/python-modules/bx-python/default.nix
 2021-12-03 00:11:41 -08:00
Austin Seipp
2a295f42c8 symbiyosys: 2021.09.13 -> 2021.11.30 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-12-02 21:48:51 -06:00
Austin Seipp
a79ca33d94 yosys: 0.10+1 -> 0.11+52, with abc update 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-12-02 21:48:51 -06:00
Bobby Rong
296de886d0
Merge pull request #148019 from hjones2199/kstars356 
kstars: 3.5.5 -> 3.5.6
 2021-12-03 09:24:39 +08:00
Jonathan Ringer
35f45f9dd7
Merge pull request #147426 from NixOS/python-unstable 
Python unstable 2021-11-25
 2021-12-02 15:56:12 -08:00
wackbyte
6a2815218d groove: 5.7.4 -> 5.8.1 and jre -> jre8 
I tested OpenJDK11 but it didn't seem to work.
 2021-12-02 22:18:13 +02:00
Markus Kowalewski
53f32adc65 cp2k: build with elpa 2021-12-02 17:22:41 +01:00
qbg
b5b4a6ac4f
mathematica: Install desktop items (#147641) 2021-12-02 15:17:23 +02:00
Ryan Burns
ac9ad0a998
Merge pull request #148240 from hjones2199/adopt-multi 
adopt multiple packages
 2021-12-01 23:34:28 -08:00
Hunter Jones
b952a9b16e adopt multiple packages 2021-12-01 22:04:14 -06:00
Justin Bedo
82aef7957d
fastp: 0.23.1 -> 0.23.2 2021-12-02 08:03:17 +11:00
Vincent Laporte
48406e3fca coq_8_14: 8.14.0 → 8.14.1 
And build Coq ≥ 8.14 with OCaml 4.12
 2021-12-01 13:46:15 +01:00
Jörg Thalheim
e89d789748
Merge pull request #148096 from arkivm/fix-mrtrix 
mrtrix: 3.0.2 -> unstable-2021-11-25
 2021-12-01 10:27:11 +00:00
Doron Behar
43ed12450e
Merge pull request #147828 from doronbehar/pkg/maxima 2021-12-01 11:34:38 +02:00
Vikram Narayanan
b1d95dca56 mrtrix: 3.0.2 -> unstable-2021-11-25 
The latest stable version fails to build with latest eigen (> 3).
https://github.com/MRtrix3/mrtrix3/pull/2368
 2021-11-30 21:03:53 -08:00
Fabian Affolter
c586350dfb
flatcam: add packaging 2021-11-30 18:52:55 -08:00
Doron Behar
50ba747abe yacas: Fix gui and jupyter build 
- Add a patch fixing jsoncpp include.
- Add a build flag for java support.
- Add a `yacas-gui` build that is built with Gui (and jupyter support disabled).
- Enable tests.
- Reformat expression with a 1 input / argument per line.
 2021-12-01 01:51:31 +02:00
Sandro
964a962222
Merge pull request #143545 from r-ryantm/auto-update/betaflight-configurator 2021-11-30 18:13:23 +01:00
Hunter Jones
b04ef6a552 kstars: 3.5.5 -> 3.5.6 2021-11-30 08:13:12 -06:00
tilcreator
5989d54401 inav-configurator: init at 3.0.2 2021-11-30 15:11:55 +01:00
Sandro
ebdd276b68
Merge pull request #147499 from trofi/fix-samtools-for-ncurses-6.3 2021-11-29 20:33:45 +01:00
Doron Behar
57ab62314b maxima, sage: Simplify lisp-compiler arguments namings 
Make clearer the difference between `maxima` and `maxima-ecl` top-level
attributes. Use the `lisp-compiler` as a passthru for all of sage's
expressions. Add the `pname` attribute for `ecl` for compatibility with
other lisp implementations.
 2021-11-29 15:51:30 +02:00
Doron Behar
8d17f4babf maxima: 5.45.0 -> 5.45.1 
- Reformat expression with 1 line per input / argument
- Add @doronbehar as maintainer.
 2021-11-29 15:51:29 +02:00
Doron Behar
8d227fe05c wxmaxima: 21.05.2 -> 21.11.0 
- Remove the `Version-` prefix from the version.
- Add @doronbehar as maintainer.
 2021-11-29 14:41:57 +02:00
Dmitry Kalinkin
51bf009063
mxnet: 1.6.0 -> 1.8.0 2021-11-28 17:27:31 -05:00
Dmitry Kalinkin
b39504da72
mxnet: fix for gcc10+, enable on darwin 2021-11-28 17:27:11 -05:00
Markus Kowalewski
5cfe3c4e82
gromacs: fix double precission build on aarch64 2021-11-28 12:43:57 +01:00
Dmitry Kalinkin
b1b02f09ad
Merge pull request #147671 from trofi/fix-root5-for-binutils-2.36 
root5: binutils 2.37 fix
 2021-11-28 04:43:28 -05:00
Bernardo Meurer
51694b0af4 root5: binutils 2.37 fix 
Co-authored-by: TredwellGit <tredwell@tutanota.com>
 2021-11-28 08:49:32 +00:00
Sandro
5d6a70c260
Merge pull request #147202 from voidIess/u/geogebra_6_0_672_0 2021-11-28 03:51:46 +01:00
Markus Kowalewski
8fb36866b8
octopus: 11.2 -> 11.3 2021-11-28 00:04:47 +01:00
Chad Jablonski
7944324d80 programmer-calculator: 2.1 -> 2.2 2021-11-26 23:19:39 -05:00
Sergei Trofimovich
8147fb683c samtools: pull upstream fix for ncurses-6.3 
Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
 2021-11-26 13:02:05 +00:00
Ellie Hermaszewska
7282988ce9
Merge pull request #147394 from wirew0rm/bumpPicoscope 
picoscope: 7.0.83 -> 7.0.86 + LANG=C
 2021-11-26 09:33:26 +08:00
Sandro
eff5cece35
Merge pull request #146648 from florentc/tlaplus 2021-11-25 12:38:31 +01:00
Justin Bedo
c1eb0dddea
delly: 0.8.7 -> 0.9.1 2021-11-25 21:19:48 +11:00
Florent C
b5d3526bab tlaplus: 1.7.0 -> 1.7.1 
This updates tlaplus to the most recent stable version and directly
fetches the tlatools jar file from the official Github release page
instead of building from the sources. In the previous tlaplus nix
package, there was an issue with the tools when passing some command
line arguments such as `-workers 4` for TLC. A java string method was
not found and the program would not proceed correctly. This solves this
issue.
 2021-11-25 10:56:11 +01:00
voidless
a34736a38f geogebra6 6-0-644-0 -> 6-0-676-0 2021-11-24 23:15:54 +01:00
Alexander Krimm
e248ab379a picoscope: set LANG=C in wrapper 
The picoscope application seems to crash for non-english locales. This
overrides the LANG environment variable to C. This does not affect the
language selected in the mono gtk GUI.
 2021-11-23 11:26:40 +01:00
Alexander Krimm
d56073935d picoscope: 7.0.83 -> 7.0.86 
Update performed via update.py, other affected versions:
libps*: 2.1.75 -> 2.1.76
libpicoipp: 1.3.0-4r121 -> 1.3.0-4r130
 2021-11-23 11:21:26 +01:00
evils
decac5a0d2
kicad-unstable: 2021-07-12 -> 6.0.0-rc1 (#142261) 
* kicad-unstable: 2021-07-12 -> 2021-11-10

with changes to library paths

Plugin and Content Manager seems to work
  (not related to the library paths changes)

* kicad-unstable: 2021-11-10 -> 6.0.0-rc1
 2021-11-23 00:05:57 -05:00
evils
d2c4e0a3ba
kicad: 5.1.11 -> 5.1.12 (#145403) 
very minor change
5.1.11 was never officially released
  due to a re-tag
 2021-11-23 00:05:27 -05:00
github-actions[bot]
18ad263272
Merge master into staging-next 2021-11-21 18:01:07 +00:00
Artturi
8d6a02b049
Merge pull request #146787 from risicle/ris-hmmer-x86_64 2021-11-21 17:46:47 +02:00
Sandro
07f29d2db2
Merge pull request #146829 from r-burns/isx86 2021-11-21 14:20:12 +01:00
github-actions[bot]
c68c4b3db8
Merge master into staging-next 2021-11-21 12:01:20 +00:00
7c6f434c
b56d7a70a7
Merge pull request #146792 from SuperSandro2000/R 
R: manually fix things after patches got applied
 2021-11-21 08:57:26 +00:00
github-actions[bot]
6ad93ecdbb
Merge master into staging-next 2021-11-21 06:01:18 +00:00
Ryan Burns
2175b157ac treewide: refactor isi686 && isx86_64 -> isx86 2021-11-20 17:50:41 -08:00
Mauricio Collares
1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures (#4) 2021-11-20 20:13:07 -03:00
Sandro
00a52ef677
R: manually fix things after patches got applied 
This prevents conflicts in case a patch changes the same line
 2021-11-20 21:10:28 +01:00
Robert Scott
ec24bab90e hmmer: restrict platforms to x86_64 
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
 2021-11-20 19:17:57 +00:00
AndersonTorres
dc2cad8150 gp2c: cosmetical changes 2021-11-19 20:35:16 -03:00
AndersonTorres
3845245d71 pari: 2.13.1 -> 2.13.3 2021-11-19 20:35:16 -03:00
Jonathan Ringer
fadaef5aed
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/applications/networking/browsers/chromium/common.nix
 2021-11-19 14:31:57 -08:00
Sandro
ab9aa0dfeb
Merge pull request #146668 from rittelle/remove-rittelle 2021-11-19 21:56:17 +01:00
rittelle
4d8d035c6c
Removed rittelle from the maintainer list 2021-11-19 21:29:09 +01:00
Yurii Matsiuk
29ed2bbe02
fricas: fix build 2021-11-19 21:06:44 +01:00
github-actions[bot]
9d44a614de
Merge master into staging-next 2021-11-19 12:01:09 +00:00
Doron Behar
4d28812ef4 qalculate-gtk: 3.20.1 -> 3.21.0 
Add @doronbehar as maintainer to qalculate-gtk and libqalculate.
 2021-11-19 09:15:32 +02:00
github-actions[bot]
cf671bd5e9
Merge master into staging-next 2021-11-17 12:01:23 +00:00
Sébastien Maret
7a5f0ec2d1 R: fix build on Darwin 
Closes #146131.
 2021-11-17 11:08:50 +01:00
Sébastien Maret
7eea330318
gildas: 20200901_a -> 20211101_a (#146224) 2021-11-17 01:03:57 -05:00
github-actions[bot]
f8cf67790e
Merge master into staging-next 2021-11-17 06:01:28 +00:00
figsoda
6ad04bcb7d
Merge pull request #146243 from figsoda/treewide-rust-feature 
treewide: use buildFeatures and checkFeatures for rust packages
 2021-11-16 21:00:48 -05:00
github-actions[bot]
ca7a3ad2e8
Merge master into staging-next 2021-11-16 18:01:14 +00:00