Vladimír Čunát
5effa4e0f9
Merge branch 'master' into staging-next
...
Comments on conflicts:
- llvm: d6f401e1469ecc70
2019-02-01 09:22:29 +01:00
Markus Kowalewski
57c37456db
openblas: make the optimazation target overridable
2019-01-29 14:34:02 +01:00
Will Dietz
1f0467005d
openblas: 0.3.4 -> 0.3.5, rework a bit ( #53972 )
...
* openblas: simplify a bit, fix doCheck so tests are enabled non-cross.
* doCheck should be 'true' in (at least) the non-cross case,
this looks like an inverted check that's largely benign
* doCheck will be set to 'false' in the cross case anyway,
makeDerivation does this IIRC
* targetPrefix can be used without checking, probably by design
Derivation hash does change but no "real" functionality change intended.
* openblas: nix types for config attrs (hash-preserving)
* openblas: more nix-ification, merge in cross attrs, prefer to always set
(but set appropriately for cross and non-cross cases both)
* I'm not sure what NO_BINARY_MODE does,
this change now sets explicitly false in the non-cross scenario
(previously unset unless cross).
* Drop musl NO_AFFINITY case, will be removed in upgrade shortly
* openblas: 0.3.4 -> 0.3.5
2019-01-15 16:36:07 +01:00
Frederik Rietdijk
05ee1015bb
openblas: fix cross-compilation
2019-01-15 10:11:33 +01:00
Timo Kaufmann
04ba895ecd
suitesparse: 5.3.0 -> 5.4.0 ( #53128 )
2019-01-01 15:47:55 +01:00
Silvan Mosberger
eb864397a0
Merge pull request #52508 from tkonolige/fix_suitesparse_darwin
...
suitesparse: Fix darwin support
2018-12-31 03:24:48 +01:00
agracie
a3fc481b76
mkl: fix hash on Darwin
2018-12-26 20:57:08 -05:00
Bas van Dijk
72eae72223
openblas: fix build on x86_64-darwin
...
See: https://github.com/xianyi/OpenBLAS/issues/1926
2018-12-20 13:25:44 +01:00
Benjamin Hipple
6206a342e0
mkl: include Intel's libiomp.so in the MKL RPM unpack
...
Since Intel's default openmp implementation is available in the same src
tarball, we can just include it in the package. This means that `mkl` now "just
works" without any environment variables, fragile setup-hooks, or forced
propagation.
Since the openmp implementation is only needed at runtime (and for test cases),
users can substitute a different one if they prefer by exporting it with
`LD_PRELOAD`, which is how Intel recommends handling this. If they do not do so,
`libiomp.so` lives next to `libmkl_rt.so` and thus will be in the RPATH as a
sane default.
Since this still comes from the same src tarball, we can ship it without losing
the fixed-output derivation; likewise, since Hydra is not building or caching
these, shipping these proprietary packages costs no bandwidth for the nix
community.
2018-12-19 22:05:22 +01:00
Tristan Konolige
00005ce0bd
suitesparse: Fix darwin support
...
Suitesparse libraries would end up containing references to the build
directory. fixDarwinDylibNames appears to not fix this problem. We
manually use intall_name_tool to set the library paths correctly.
2018-12-18 18:08:17 -07:00
Frederik Rietdijk
4deb04a97a
openblas: 0.3.3 -> 0.3.4
2018-12-07 15:21:25 +01:00
Frederik Rietdijk
a510aa2672
Merge master into staging-next
2018-12-03 12:18:43 +01:00
Will Dietz
cd14ad53c3
or-tools: appease warning re:python3, try testing
2018-12-01 13:38:16 -06:00
Will Dietz
046e7980f9
or-tools: parallel
2018-12-01 13:38:16 -06:00
Will Dietz
70c2e88c96
or-tools: touchup
2018-12-01 13:38:16 -06:00
Will Dietz
c4feda8b01
or-tools: v6.9.1 -> v6.10
...
https://github.com/google/or-tools/releases/tag/v6.10
2018-12-01 13:38:16 -06:00
Frederik Rietdijk
fed881e510
Merge staging-next into staging
2018-11-21 12:39:46 +01:00
Matthew Bauer
d492f53faf
Merge pull request #50527 from matthewbauer/ninja-check-phase
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Add check phase to ninja setup hook
2018-11-20 16:55:12 -06:00
Timo Kaufmann
6059bf842a
Merge pull request #49994 from r-ryantm/auto-update/python3.6-cvxopt
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python36Packages.cvxopt: 1.2.1 -> 1.2.2
2018-11-20 14:25:43 +01:00
Matthew Bauer
285eb9a894
cmake: set CTEST_OUTPUT_ON_FAILURE globally
...
We should always use this.
2018-11-19 16:16:16 -06:00
Frederik Rietdijk
e343a85cfb
Merge master into staging-next
2018-11-19 09:55:32 +01:00
Matthew Bauer
2c47a4229f
treewide: remove ctest usages
...
These are already in the generated makefiles!
2018-11-18 19:31:02 -06:00
Matthew Bauer
2c1d3a9a82
Merge remote-tracking branch 'upstream/master' into staging
2018-11-18 19:02:09 -06:00
Orivej Desh
e66d263f6b
eigen3_3: move version overrides to all-packages.nix
2018-11-18 10:53:25 +00:00
Frederik Rietdijk
63c6875f26
Merge master into staging-next
2018-11-18 10:32:12 +01:00
Renaud
cde945a165
Merge pull request #48044 from schneefux/pkg/fetchfromgithub
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treewide: Use fetchFromGitHub instead of fetchurl
2018-11-14 09:48:22 +01:00
Matthew Bauer
f2a20b6e52
treewide: use wafHook
...
Replace "waf" phases with wafHook that manages everything
automatically. Should make things more modular.
Packages affected here are:
- a2jmidid
- ams-lv2
- ardour
- fomp
- guitarix
- ingen
- jalv
- mda-lv2
- non
- patchage
- hamster-time-tracker
- kupfer
- xiphos
- xfce4-dockbarx-plugin
- xfce4-namebar-plugin
- dropbox
- clasp
- aubio
- liliv
- lv2
- lvtk
- ntk
- raul
- sratom
- suil
- ganv
- ndn-cxx
- ns3
- serd
- sord
- termbox
- wxmupen64plus
- jackaudio
- pflask
- blockhash
- glmark2
- weighttp
2018-11-13 19:13:48 -06:00
Daiderd Jordan
5b8c4b0646
suitesparse: fixup darwin libraries
...
The build created libraries with an install_name that points to the
build directory instead of the installation prefix. Causing errors like
this when other packages try to link against it's libraries.
Library not loaded: /private/tmp/nix-build-suitesparse-5.3.0.drv-0/SuiteSparse/lib/libcholmod.3.0.12.dylib
2018-11-13 00:25:32 +01:00
markuskowa
45a4adb1b3
Merge branch 'master' into atlas-remove
2018-11-11 02:22:04 +01:00
Markus Kowalewski
06f3676770
scalapack: set platform to linux
2018-11-11 02:17:20 +01:00
markuskowa
bf8c031074
Merge pull request #49199 from markuskowa/fet-scalapack
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scalapack: switch to openblas and add test
2018-11-05 21:12:01 +01:00
Matthew Bauer
95373d3634
atlas: remove
...
atlas is broken and can apparently be removed.
Fixes #49594
2018-11-04 20:23:12 -06:00
Patrick Hilhorst
4cfeb9da53
cudatoolkit, cudnn: many updates
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cudatoolkit_9_1: 9.1.85.1 -> 9.1.85.3
cudatoolkit_9_2: init at 9.2.148.1
cudatoolkit_9: 9.1.85.1 -> 9.2.148.1
cudatoolkit_10, cudatoolkit_10_0: init at 10.0.130
cudnn_cudatoolkit_9_0: 7.0.5 -> 7.3.0
cudnn_cudatoolkit_9_1: init at 7.1.3
cudnn_cudatoolkit_9_2: init at 7.2.1
cudnn_cudatoolkit_9: 7.0.5 (9.1) -> 7.3.1 (9.2)
cudnn_cudatoolkit_10, cudnn_cudatoolkit_10_0: init at 7.3.1
2018-10-30 19:09:20 +01:00
Markus Kowalewski
41a579aa68
scalapack: switch to openblas + add test
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* change from blas,lapack to openblas
* add check phase
* enable parallel building
* fix license
2018-10-27 01:06:07 +02:00
Mateusz Kowalczyk
02fb26136c
or-tools: new package (v6.9.1)
2018-10-25 14:15:13 +09:00
Mateusz Kowalczyk
b41f8936b9
QuadProgpp: Add new package.
...
Necessary for #48895 .
2018-10-24 09:19:26 +09:00
Michael Raskin
acb7d85993
lrs: init at 7.0
2018-10-23 11:41:29 +03:00
Renaud
0cc07aeee6
Merge pull request #48172 from jluttine/cholmod-extra-1.2.0
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cholmod-extra: init at 1.2.0
2018-10-21 17:28:30 +02:00
Thomas Tuegel
2e4397f631
Merge pull request #35213 from jluttine/suitesparse-5.1.2
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suitesparse: 4.4.4 -> 5.3.0
2018-10-20 08:07:27 -05:00
Jörg Thalheim
351319e557
Merge pull request #48419 from r-ryantm/auto-update/ipopt
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ipopt: 3.12.10 -> 3.12.11
2018-10-15 21:36:42 +01:00
Matthew Bauer
0b298d516a
Merge pull request #47182 from bhipple/add/mkl
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mkl: init at 2019.0.117
2018-10-15 15:17:57 -05:00
R. RyanTM
ab050719ba
ipopt: 3.12.10 -> 3.12.11
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
2018-10-14 08:11:02 -07:00
Jaakko Luttinen
f065de344d
cholmod-extra: init at 1.2.0
2018-10-10 22:08:25 +03:00
Jaakko Luttinen
8fb27604fb
suitesparse: 4.4.4 -> 5.3.0
2018-10-10 07:36:00 +03:00
schneefux
d81a96e601
mirtk: use fetchFromGitHub instead of fetchgit
2018-10-08 14:33:55 +02:00
Timo Kaufmann
65589faa2f
zn_poly: 0.9 -> 0.9.1
...
Sage has taken over maintenance since the original author no longer
maintains the project.
2018-10-05 15:50:30 +02:00
Benjamin Hipple
0b82df8dbe
Convert entire mkl package to a fixed-output derivation
2018-10-04 13:16:20 +00:00
Benjamin Hipple
ba02a2c371
Add Darwin as a supported platform
2018-10-02 22:53:48 -04:00
Daiderd Jordan
1383c08f2c
Merge branch 'master' into staging-next
2018-10-01 19:42:07 +02:00
R. RyanTM
0e5e4aed06
arpack: 3.5.0 -> 3.6.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/arpack/versions
2018-09-26 11:28:59 +02:00
John Ericson
c701d6cb21
Merge remote-tracking branch 'upstream/master' into staging
2018-09-25 14:20:27 -04:00
Will Dietz
8a0a34f766
openblas: try leaving openmp enabled w/musl
2018-09-25 00:08:17 -05:00
Dmitry Vyal
81caec3568
openblas-0.3.1 -> 0.3.3
2018-09-23 09:35:29 +02:00
Frederik Rietdijk
14673d61ed
Merge master into staging
2018-09-23 09:33:09 +02:00
Benjamin Hipple
d7c1d04af4
mkl: init at 2019.0.117
...
This packags the Intel Math Kernel library on x86-64 platforms, which is a
dependency for many data science and machine learning packages.
Upstream, Intel provides proprietary binary RPMs with a permissive
redistribution license. These have been repackaged in both Debian and Anaconda,
so we are not the first distribution to redistribute.
2018-09-22 15:28:39 -04:00
Orivej Desh
f0c0e2acc6
htslib: 1.7 -> 1.9
2018-09-21 22:42:28 +00:00
John Ericson
7319013ea1
Merge remote-tracking branch 'upstream/master' into staging
2018-09-18 16:55:42 -04:00
Christopher Ostrouchov
9ef31b2f96
papi: init at 5.6.0 ( #46619 )
...
papi is a high resolution performance counter.
2018-09-13 23:35:06 +02:00
Christopher Ostrouchov
e34a9fff1f
scalapack: init at 2.0.2 ( #46610 )
...
Added scalapack with flexibility to choose blas, lapack, and mpi
implementation.
2018-09-13 21:27:47 +02:00
Uli Baum
79d9145469
parmetis: set license to unfree
...
generic unfree license fits best
2018-09-13 21:10:40 +02:00
Christopher Ostrouchov
3c2a74719a
parmetis: init at 4.0.3 ( #46615 )
2018-09-13 21:02:17 +02:00
Daiderd Jordan
89e52157c8
Merge pull request #46584 from LnL7/darwin-broken-a
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broken darwin packages (a)
2018-09-13 00:05:42 +02:00
Josef Kemetmüller
d726c0ff1d
scs: Fix darwin build
...
Additionally we make the unit-test deterministic by specifying a seed
instead of using something random.
2018-09-12 20:58:26 +02:00
Daiderd Jordan
f1542f612b
atlas: mark broken on darwin
...
Started to fail since 3.10.3.
/private/tmp/nix-build-atlas-3.10.3.drv-0/ATLAS/build/bin/ATLrun.sh: line 4: 31119 Segmentation fault: 11 $atldir/$*
make[3]: *** [Makefile:1695: ssanity_test] Error 139
/cc ZHF #45961
2018-09-12 20:50:54 +02:00
Timo Kaufmann
408eacbc89
openblas: fix pkg-config alias name
...
Turns out the filename is important. It should be `cblas`, not
`openblas-cblas`.
2018-09-03 23:57:45 +02:00
Robert Schütz
93550cbddf
Merge branch 'master' into staging-next
2018-08-31 17:32:48 +02:00
John Ericson
2c2f1e37d4
reewide: Purge all uses stdenv.system and top-level system
...
It is deprecated and will be removed after 18.09.
2018-08-30 17:20:32 -04:00
Robert Schütz
a9780a095b
Merge branch 'master' into staging-next
2018-08-30 21:56:13 +02:00
Jan Tojnar
c1e53166ad
Revert "sympow: don't use placeholder"
...
This reverts commit bae15c811f
2018-08-30 18:18:30 +02:00
Timo Kaufmann
c614c15f93
Merge pull request #45257 from timokau/openblas-pc
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openblas: add pkg-config aliases
2018-08-26 20:13:19 +02:00
Benjamin Hipple
291de70ed6
scs: init at 2.0.2 ( #45294 )
2018-08-23 23:26:41 +02:00
Timo Kaufmann
26d5d030fe
openblas: add pkg-config aliases
2018-08-21 16:39:57 +02:00
Vladimír Čunát
153a19df05
Merge branch 'master' into staging-next
...
Hydra: ?compare=1474536
2018-08-20 09:15:33 +02:00
Timo Kaufmann
8014c7f186
Merge pull request #45013 from jbaum98/fflas-ffpack_darwin
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fflas-ffpack: Add darwin support
2018-08-19 16:24:52 +02:00
Jake Waksbaum
8374400cec
fflas-ffpack: Add darwin support
2018-08-18 20:28:06 +00:00
Benjamin Hipple
65bb0b23b9
Add platforms.all
2018-08-18 12:11:06 -04:00
Benjamin Hipple
460029cf94
ecos: init at 2.0.6
2018-08-18 03:38:50 +00:00
Vladimír Čunát
14aa936ec5
Merge branch 'staging-next' into staging
2018-08-17 20:53:27 +02:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next
...
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
Sarah Brofeldt
692c02ff4b
Merge pull request #44993 from bcdarwin/MIRTK
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mirtk: init at 2.0.0
2018-08-16 10:51:12 +02:00
Jake Waksbaum
c0c854da95
zn_poly: Add darwin support
2018-08-14 00:49:42 -04:00
Ben Darwin
0adc6f4d8f
mirtk: init at 2.0.0
2018-08-13 15:55:04 -04:00
Vladimír Čunát
ded9a4b1aa
Merge branch 'staging-next' into staging
...
Commits from master, conflict resolutions, etc.
2018-08-13 20:57:50 +02:00
Vladimír Čunát
00df25ee57
Merge branch 'master' into staging-next
...
Hydra: ?compare=1472947
2018-08-12 10:33:41 +02:00
Jan Malakhovski
b2563a55b7
nifticlib: disable tests
2018-08-11 09:35:38 +00:00
Jake Waksbaum
6385e5ffda
lcalc: Add darwin support ( #44850 )
2018-08-10 09:53:52 +02:00
Frederik Rietdijk
d9fa74ba78
Merge master into staging
2018-08-09 18:28:15 +02:00
Timo Kaufmann
aabc55e154
libhomfly: init at 1.02r5
...
libhomfly is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
2018-08-05 16:50:33 +02:00
Timo Kaufmann
34c2f4150b
libbraiding: init at 1.0
...
libbraiding is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
2018-08-05 16:50:32 +02:00
Timo Kaufmann
e550e5d0c7
lcalc: apply c++11 patch
2018-08-04 14:22:29 +02:00
John Ericson
db965063b3
treewide: Make configureFlags lists
2018-08-03 17:06:03 -04:00
Frederik Rietdijk
ad47d658d1
Merge master into staging-next
2018-07-21 19:43:53 +02:00
Jörg Thalheim
218298b30f
Merge branch 'master' into unused5
2018-07-21 15:41:22 +01:00
volth
52f53c69ce
pkgs/*: remove unreferenced function arguments
2018-07-21 02:48:04 +00:00
volth
6d2857a311
[bot] treewide: remove unused 'inherit' in let blocks
2018-07-20 19:38:19 +00:00
Frederik Rietdijk
8213ff161c
Merge master into staging-next
2018-07-19 18:24:24 +02:00
Luke Adams
eba8679bc5
cudnn*_cudatoolkit*: use public NVIDIA mirror ( #31551 )
...
* cudnn*_cudatoolkit*: use NVIDIA mirror instead of requireFile
* cudnn_cudatoolkit7: update hash since public mirror is different
2018-07-18 03:21:57 +00:00
Will Dietz
1b3d8eefe3
openblas: backport another patch, fix crash w/Go and Octave
...
Also fixes numpy crashing during tests w/musl.
2018-07-12 12:03:26 -05:00
Timo Kaufmann
d2f0fc1f41
openblas: backport fix
...
https://github.com/xianyi/OpenBLAS/issues/1666
Causing test failures in cvxopt and (according to an openblas issue) numpy.
2018-07-11 22:06:32 +02:00
aszlig
c8ed322b04
openblas: 0.3.0 -> 0.3.1
...
Since the exposure of the version attribute done in
892a0e8ff4https://nix-cache.s3.amazonaws.com/log/wi79zyfmwdpwx7bm29dzqh4vglx3x550-openblas-0.3.0.drv
According to @edolstra the build slaves of Hydra updated to a new
kernel, which seems to be the real cause for this issue. The latter is
already tracked upstream[1] and a fix[2] is already included in version
0.3.1.
This very update cases 4795 rebuilds across all architectures we
support, so it's still not significant enough to go through staging. In
addition the number of rebuilds doesn't include the amount of builds
that are currently failing.
My original idea was to add a patch just for fixing this on i686-linux
and do the real update via staging, but the amount of rebuilds still is
in an acceptable range IMO and @edolstra agreed on that on IRC.
[1]: https://github.com/xianyi/OpenBLAS/issues/1575
[2]: https://github.com/xianyi/OpenBLAS/pull/1583
Signed-off-by: aszlig <aszlig@nix.build>
Cc: @ttuegel
2018-07-01 18:46:36 +02:00
