JakeHillion/nixpkgs
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615 Commits

Author SHA1 Message Date
Benjamin Hipple
d41c129198
Merge pull request #95727 from obsidiansystems/cuda11 
cudatoolkit: init v11.0.3
 2020-08-26 15:09:08 -04:00
Frederik Rietdijk
0a874ff2a6 Merge master into staging-next 2020-08-24 11:50:58 +02:00
Daniël de Kok
bebe5c963f
Merge pull request #95739 from danieldk/magma-2.5.3 
magma: 2.5.0 -> 2.5.3
 2020-08-23 10:58:21 +02:00
Jan Tojnar
91104b5417
Merge branch 'master' into staging-next 2020-08-23 02:00:50 +02:00
Silvan Mosberger
23962528ce
Merge pull request #93703 from taktoa/master 
osqp: init at 0.6.0
 2020-08-20 02:03:08 +02:00
Matthew Bauer
abba9a2154 nccl: 2.4.8-1 -> 2.7.8-1 2020-08-19 13:34:56 -05:00
Matthew Bauer
164f8024e9 cudatoolkit: init v11.0.3 2020-08-19 13:34:52 -05:00
Daniël de Kok
147e24dcd6 magma: 2.5.0 -> 2.5.3 
Other changes:

- Move gfortran and cmake to nativeBuildInputs.
- Magma now (only) generates dynamic libraries by default.
- Use ninja for faster builds.
 2020-08-18 11:18:08 +02:00
Frederik Rietdijk
d59c57f8a6
Merge pull request #92412 from matthewbauer/blas-cross 
Blas/Lapack cross fixes
 2020-08-15 08:55:57 +02:00
Daniël de Kok
a49a59bc6c amd-libflame: init at 2.2 
libflame is a protable library for dense matrix computations,
providing a complete LAPACK implementation. The AMD fork of libflame
is optimized for AMD CPUs.
 2020-08-09 08:29:08 +02:00
Remy Goldschmidt
c473490524
osqp: init at 0.6.0 2020-08-08 13:32:51 -07:00
Daniël de Kok
57d4c67fb8
Merge pull request #93052 from danieldk/amd-blis-zen-only 
amd-blis: init at 2.2
 2020-08-08 20:01:24 +02:00
R. RyanTM
ca9c2e3548 petsc: 3.13.2 -> 3.13.3 2020-08-07 12:44:29 +10:00
Daniël de Kok
1474bfe27d
Merge pull request #93653 from danieldk/mkl-2020.2.254 
mkl: 2020.1.217 -> 2020.2.254
 2020-08-05 08:08:08 +02:00
Pavol Rusnak
7839270bb0
or-tools: 7.6 -> 7.7 2020-07-26 15:34:17 +02:00
Daniël de Kok
6a236f5410 mkl: 2020.1.217 -> 2020.2.254 2020-07-22 17:38:07 +02:00
markuskowa
533720caa9
Merge pull request #93031 from andrew-d/andrew/dsd 
dsd: init at 2018-07-01
 2020-07-18 23:18:23 +02:00
Jack Coughlin
8a65fe8da6 petsc: Fix install_name_tool patch 
The PETSc library's config/install.py script checks whether
/usr/bin/install_name_tool is an existing file:

https://gitlab.com/petsc/petsc/-/blob/master/config/install.py#L368

Therefore, it is not enough to replace it with something that we expect
to be on the PATH, as this will cause the linked if statement to be
silently skipped. The consequence is that applications linked against
this version of petsc will fail at runtime on MacOS with a dynamic
loading error.

Instead, we should replace install_name_tool with the absolute path of a
binary we know will be present at build time.

Note that this should be fixed upstream as well, but this is sufficient
to fix the runtime error.
 2020-07-18 08:47:24 -07:00
Andrew Dunham
f856cb8a9e it++: init at 4.3.1 2020-07-16 17:59:24 -07:00
Daniël de Kok
4fbe92df09 amd-blis: init at 2.2 
We compile specifically for Zen:

- Zen/Zen2 are not included in the x86_64 or amd64 configurations.
- Including them breaks AMD BLIS in other places, since some functions
  have Zen-specific definitions that fail on other platforms.

Non-Zen CI runners will succeed when they are Haswell or later, since
a Haswell kernel is compiled as a dependency.
 2020-07-13 13:16:37 +02:00
Benjamin Hipple
2ec5479689
Merge pull request #89299 from wucke13/petsc 
petsc: add fotran build argument
 2020-07-07 13:50:29 -04:00
wucke13
dc5113fb06 petsc: 3.13.1 -> 3.13.2 
+ add fortran build argument
 2020-07-07 09:34:43 +02:00
Matthew Bauer
8a525d6a2b arpack: add blas, lapack to library path 
Fixes #89215
 2020-07-06 01:30:10 -04:00
R. RyanTM
669b2ab244 suitesparse-graphblas: 3.2.2 -> 3.3.0 2020-06-30 16:21:46 +00:00
R. RyanTM
f79c05b113 openblas: 0.3.9 -> 0.3.10 2020-06-19 10:59:46 +02:00
Benjamin Hipple
4af635feff
Merge pull request #87866 from danieldk/validate-pkgconfig-hook 
validatePkgConfig: init
 2020-06-02 23:27:27 -04:00
Daniël de Kok
127cdd0cab mkl: use validatePkgConfig hook 2020-05-31 20:45:07 +02:00
Benjamin Hipple
f04a5af0cc
Merge pull request #82180 from bcdarwin/bppcore 
bppsuite: init at 2.4.1
 2020-05-26 21:07:25 -04:00
Ben Darwin
7f656f3ef6 bpp-popgen: init at 2.4.1 2020-05-25 21:12:17 -04:00
Ben Darwin
a53b27829c bpp-phyl: init at 2.4.1 2020-05-25 21:10:59 -04:00
Ben Darwin
8d712ccc16 bpp-seq: init at 2.4.1 2020-05-25 21:09:52 -04:00
Ben Darwin
adc7b4c979 bpp-core: init at 2.4.1 2020-05-25 21:08:31 -04:00
Daniël de Kok
e88673aa27 mkl: fix expectation of MKLROOT being set in pkg-config files 
The Intel MKL pkg-config files did not work, because they expect that
the MKLROOT environment variable is set. This change replaces
occurences by the actual path of MKL in the Nix store.

Since the pkg-config files seem to break quite frequently after
upgrades, add a post-install check to validate the pkg-config files.
 2020-05-14 19:40:18 +02:00
Timo Kaufmann
346de1fb8c
Merge pull request #87518 from r-ryantm/auto-update/sympow 
sympow: 2.023.5 -> 2.023.6
 2020-05-11 21:35:40 +00:00
R. RyanTM
f66d997a29 sympow: 2.023.5 -> 2.023.6 2020-05-10 16:42:21 +00:00
Frederik Rietdijk
303adc7697 Merge master into staging-next 2020-05-10 09:43:48 +02:00
Dmitry Kalinkin
e80302dc7d
Merge pull request #86142 from bcdarwin/itk-5.1.0 
Itk: 5.0.1 -> 5.1.0
 2020-05-09 15:03:28 -04:00
Frederik Rietdijk
d7cca0f356 Merge master into staging-next 2020-05-09 11:12:29 +02:00
R. RyanTM
c0e63bc87e petsc: 3.13.0 -> 3.13.1 2020-05-08 15:57:25 +00:00
Benjamin Hipple
706642091e mkl: include symlinks to versioned libblas.so.3 names 
Some build systems look for this specifically.
 2020-05-08 06:52:02 +02:00
Jonathan Ringer
c1e605dd6b openblas: also export unversioned libraries for linux 2020-05-08 06:52:02 +02:00
Mario Rodas
a340a9f4d8
Merge pull request #86755 from andersk/abseil-ortools 
abseil-cpp: 20191119 -> 20200225.2; or-tools: 7.5 -> 7.6
 2020-05-07 06:53:54 -05:00
Ben Darwin
5caa76705b elastix: update for ITK 5.1.0 
- fetch patches to build elastix 5.0 with ITK 5.1
- update 'platforms': builds on Darwin, fails on aarch64
 2020-05-05 00:08:04 -04:00
R. RyanTM
7a17b13b48 or-tools: 7.5 -> 7.6 2020-05-04 03:12:00 -07:00
Frederik Rietdijk
00bbfccecf Merge staging into staging-next 2020-05-01 09:28:45 +02:00
R. RyanTM
51b1533b37 suitesparse-graphblas: 3.2.1 -> 3.2.2 2020-05-01 09:06:34 +02:00
Markus Kowalewski
15cd0bd993 openblas: 0.3.8 -> 0.3.9 2020-05-01 09:02:51 +02:00
Benjamin Hipple
21be830522
Merge pull request #85799 from matthewbauer/blas-lapack-expand-docs 
BLAS/LAPACK fixup and expand docs
 2020-04-22 21:56:20 -04:00
Matthew Bauer
5a500ff0ba blas,lapack: use correct name for library 
To match the soname, we need to use libblas.so.3, liblapack.so.3.
 2020-04-22 12:37:04 -05:00
Frederik Rietdijk
ec21df329a
Merge pull request #85636 from matthewbauer/blas-lapack-fix-fallout-from-83888 
BLAS/LAPACK fix fallout from #83888
 2020-04-21 19:59:16 +02:00