R. RyanTM
9e52523747
verilator: 4.020 -> 4.022
2019-11-30 18:27:06 -05:00
R. RyanTM
c41deafba3
gtkwave: 3.3.102 -> 3.3.103
2019-12-01 00:21:13 +01:00
R. RyanTM
da09e1e772
kallisto: 0.46.0 -> 0.46.1 ( #74430 )
2019-11-30 21:12:54 +01:00
Jan Tojnar
a69ad18da9
Merge branch 'master' into staging-next
2019-11-30 19:44:51 +01:00
R. RyanTM
98e0ead3ba
picard-tools: 2.21.1 -> 2.21.3 ( #74528 )
2019-11-30 16:24:44 +01:00
Frederik Rietdijk
d14baf7747
Merge master into staging-next
2019-11-30 08:57:28 +01:00
Ryan Mulligan
bc6b377a86
Merge pull request #74412 from r-ryantm/auto-update/hmmer
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hmmer: 3.2.1 -> 3.3
2019-11-28 06:14:56 -08:00
Jonathan Ringer
0c1c18ca44
Merge branch 'master' into staging-next
2019-11-27 22:57:50 -08:00
R. RyanTM
6563dd3351
hmmer: 3.2.1 -> 3.3
2019-11-27 18:40:23 -08:00
Matthew Bauer
e010c1b031
Merge pull request #74092 from veprbl/pr/applgrid_fix
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applgrid: fix build
2019-11-25 22:22:48 -06:00
John Ericson
d60532bc71
coq: Fix setup hook
2019-11-25 14:20:10 +00:00
Dmitry Kalinkin
bd0c4dd6ab
root: fix setupHook to work with "set -u"
2019-11-24 17:51:46 -05:00
Frederik Rietdijk
1d18c5a0fe
Merge staging-next into staging
2019-11-24 10:13:31 +01:00
Michael Raskin
c5e3aec122
golly: fix build
2019-11-22 17:41:46 +01:00
Kai Wohlfahrt
6b2504f9f2
freebayes: 2017-08-23 -> 1.3.1 (2019-06-03)
2019-11-20 09:10:31 -08:00
Frederik Rietdijk
5f8b0d7d99
Merge staging-next into staging
2019-11-19 14:53:29 +01:00
adisbladis
c9d8624ccd
treewide: Get rid of libGLU_combined
2019-11-18 20:10:43 +00:00
Mario Rodas
9f9720a567
Merge pull request #73447 from yrashk/streamlit-0.50.2
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streamlit: 0.49.0 -> 0.50.2
2019-11-16 14:51:06 -05:00
c0bw3b
9367367dfd
Treewide: fix URL permanent redirects
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Permanent redirects on homepages and/or source URLs
as reported by Repology
2019-11-16 01:41:23 +01:00
Jörg Thalheim
d729fdcd6e
nifticlib and niftseg: change platform from linux to unix sinc… ( #73442 )
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nifticlib and niftseg: change platform from linux to unix since these…
2019-11-15 11:57:17 +00:00
Yurii Rashkovskii
a1a2d8d4c0
streamlit: 0.49.0 -> 0.50.2
2019-11-15 08:35:43 +01:00
Ben Darwin
736860d34b
nifticlib and niftseg: change platform from linux to unix since these build on OSX
2019-11-14 21:25:10 -05:00
Guanpeng Xu
66d5277375
mathematica: fix version issue with zlib ( #73425 )
2019-11-14 17:19:30 -05:00
Dmitry Kalinkin
93ee8095b0
snakemake: 5.4.4 -> 5.7.4 ( #72929 )
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(#72929 )
2019-11-13 00:46:56 +01:00
Renaud
630380651d
Merge pull request #73215 from vbgl/why3-1.2.1
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why3: 1.2.0 → 1.2.1
2019-11-13 00:12:05 +01:00
Dmitry Kalinkin
a84607a0e9
eagle: use mkDerivation provided by qt5
2019-11-12 11:21:06 -05:00
Vincent Laporte
a61354f262
why3: 1.2.0 → 1.2.1
2019-11-11 11:30:52 +00:00
Matthew Bauer
5ebd36403e
Merge pull request #70641 from maggesi/rename-z77z-into-maggesi
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Rename z77z into maggesi
2019-11-07 17:18:20 -05:00
Matthew Bauer
551d9f632d
Merge pull request #72954 from nkpart/nkpart/R-darwin-enable-tcltk
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R: enable tcltk on darwin
2019-11-07 16:49:46 -05:00
Yurii Rashkovskii
2e52f98ddb
streamlit: init at 0.49.0
2019-11-06 11:01:06 -08:00
Timo Kaufmann
afb9887dbd
sage: backport fix for threejs r109
2019-11-06 14:40:16 +01:00
Timo Kaufmann
f64885b9ca
sage: fix pkgconfig errors in tests
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python.pkgs.pkgconfig raises an exception on missing packages since
version 1.5.0. Previously those errors were just silently ignored. That
worked fine, since the packages are only missing at runtime (when they
are not really needed) but present at buildtime.
Since this fails the tests now, we just add the packages to
PKG_CONFIG_PATH at runtime. This does not add additional runtime
dependencies. Still, it would be nicer if the sage testssuite would not
test the buildsystem at runtime in the first place.
The breakage was originally caused by the pkgconfig update in
1efa71616f
2019-11-06 14:40:13 +01:00
Timo Kaufmann
da7ec1c139
sage: ignore werkzeug immutable dict deprecation
2019-11-06 14:40:13 +01:00
Timo Kaufmann
f85ce834ce
sage: ignore deprecation warnings in rst2sws
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Needs to be fixed upstream (by werkzeug, twisted). Doesn't impact the
functionality and the tests are soon to be removed with the py3 update
anyway.
2019-11-06 14:40:13 +01:00
Timo Kaufmann
af480796c9
sage: ignore cmp deprecation in sagenb
2019-11-06 14:40:13 +01:00
Nick Partridge
22d0ccbd2d
R: enable tcltk on darwin
2019-11-06 13:14:11 +10:00
R. RyanTM
b7f151df70
yacas: 1.6.1 -> 1.8.0
2019-11-04 23:49:42 -08:00
scalavision
d9b40f6397
deeptools: init at 3.3.1
2019-11-04 02:42:36 -08:00
R. RyanTM
28b0a6a9e0
star: 2.7.2b -> 2.7.3a
2019-11-03 10:23:05 +01:00
R. RyanTM
1faee87692
dcmtk: 3.6.4 -> 3.6.5
2019-11-02 11:12:28 -07:00
Gabriel Ebner
ac24901d17
libqalculate: 3.4.0 -> 3.5.0 ( #72550 )
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libqalculate: 3.4.0 -> 3.5.0
2019-11-02 10:59:06 +01:00
Gabriel Ebner
a4f0bfdc87
qalculate-gtk: 3.4.0 -> 3.5.0
2019-11-02 10:54:10 +01:00
Jörg Thalheim
04a079082c
Merge pull request #72539 from r-ryantm/auto-update/jmol
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jmol: 14.29.54 -> 14.29.55
2019-11-02 07:49:50 +00:00
R. RyanTM
b3799c5627
jmol: 14.29.54 -> 14.29.55
2019-11-02 00:16:58 -07:00
R. RyanTM
7f919914bf
eprover: 2.3 -> 2.4
2019-11-01 14:00:31 -07:00
Timo Kaufmann
f7c1e8f274
Merge pull request #72328 from timokau/sage-ignore-cmp-deprecation
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sage: ignore attrs deprecation warning
2019-10-30 23:14:07 +01:00
Timo Kaufmann
32827e35d8
sage: ignore attrs deprecation warning
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cmp is deprecated since attrs 19.2.0:
http://www.attrs.org/en/19.2.0/changelog.html
The deprecation warning breaks the doctests. Fortunately they have a
rather long deprecation window, so we can just wait until upstream(s)
fix this.
2019-10-30 22:27:00 +01:00
Peter Simons
3bc76218a3
Merge pull request #72058 from nh2/r-static-library
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R: Add enableShared/enableStatic arguments
2019-10-30 13:31:52 +01:00
Niklas Hambüchen
edbe2d8145
R: Add static argument.
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R's autoconf does not use the normal configure flags for that.
2019-10-30 11:44:02 +01:00
Ben Darwin
ddc2955ad9
EZminc: 2017-08-29 -> 2019-07-25; mark unbroken
2019-10-26 09:55:30 -07:00
