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5739 Commits

Author SHA1 Message Date
Maximilian Bosch
5f2eacccf6 pythonPackages.mahotas: skip test_moments.test_normalize and test_texture.test_haralick3d testcase (#46793) 
As stated in #46368, this package seems to have issues with impure tests
(reported in https://github.com/luispedro/mahotas/issues/97).

Unfortunately the `release-18.09` job on Hydra fails at the attempt to
build this package since `test_moments.test_normalize1` and
`test_texture.test_haralick3d` breaks. Until
the root cause is identified, we skip the disabled tests to ensure that
the resulting package is not entirely broken (which can't be confirmed
with `doCheck = false`).

See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python27Packages.mahotas.x86_64-linux
See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python36Packages.mahotas.x86_64-linux
See https://logs.nix.ci/?key=nixos/nixpkgs.46793&attempt_id=b85a638d-dcb0-41d3-ab2a-9616a3bb0175

/cc @xeji @luispedro
 2018-09-17 21:33:47 +02:00
Matthieu Coudron
676ceb81b7 python3Packages.mypy: 0.620 -> 0.630 
Now requires mypy_extensions so added it as well.
 2018-09-18 00:31:41 +09:00
Uli Baum
a66c00d780 pythonPackages.dendropy: fix build 
Build failed after update to 4.4.0 because the tests are incorrectly
packages in the pypi version.
Switch to upstream github repo, fix tests, disable failing test cases
 2018-09-16 17:37:28 +02:00
Jörg Thalheim
f03e9545eb
Merge pull request #46732 from worldofpeace/asyncssh/1.14.0 
python.pkgs.asyncssh: 1.13.3 -> 1.14.0
 2018-09-16 11:22:16 +01:00
worldofpeace
710b3d678b python.pkgs.asyncssh: 1.13.3 -> 1.14.0 2018-09-16 04:48:14 -04:00
Vincent Laporte
5b8b9a08e7
pythonPackages.libnacl: fix build on darwin 2018-09-16 06:24:49 +00:00
xeji
13c500ae16
pythonPackages.pyodbc: fix build (#46703) 
Build with unixODBC instead of libiodbc, see discussion in
https://github.com/mkleehammer/pyodbc/issues/444
 2018-09-15 23:13:51 +02:00
Maximilian Bode
2438ceb5b4 salt: fix darwin build by specifying dependency on tornado 4 
/cc ZHF #45961
 2018-09-15 10:09:36 +02:00
Symphorien Gibol
46cd67e6a1 pythonPackages.{pyocr,pypillowfight}: fix homepage 2018-09-14 14:32:32 +02:00
Symphorien Gibol
cd599c8fa6 pythonPackages.pypillowfight: 0.2 -> 0.2.4 2018-09-14 14:32:32 +02:00
Symphorien Gibol
5314a74ee6 pythonPackages.pyocr: 0.4.7 -> 0.5.3 2018-09-14 14:32:31 +02:00
xeji
f1f8ce80c4
Merge pull request #46608 from xeji/p/python-fixes-2 
pythonPackages: fix some broken builds
 2018-09-14 10:56:59 +02:00
Chris Ostrouchov
bd6873774e
pythonPackages.dask-xgboost: init at 0.1.5 2018-09-13 16:42:25 -04:00
Chris Ostrouchov
72bd196b89
pythonPackages.dask-image: init at 0.1.1 2018-09-13 16:41:58 -04:00
Chris Ostrouchov
ce4b7154ac
pythonPackages.slicerator: init at 0.9.8 2018-09-13 16:41:34 -04:00
Chris Ostrouchov
1a67a15c6f
pythonPackages.pims: init at 0.4.1 2018-09-13 16:41:13 -04:00
Chris Ostrouchov
41cd200b64
pythonPackages.dask-jobqueue: init at 0.4.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
32cb956fea
pythonPackages.dask-glm: init at 0.1.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
93cdaaa3d4
pythonPackages.dask-ml: init at 0.10.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
e5cd420e73
pythonPackages.distributed: refactor move to fetchPypi 
There is a bug when using git repo in that the package does not get a
version (shows up as `0+unknown`). Using pypi fixes this issue allows
allows for auto upgrades.
 2018-09-13 15:10:40 -04:00
Uli Baum
d9bdd64f04 pythonPackages.nilearn: fix tests 
disable failing tests
 2018-09-13 19:40:29 +02:00
Uli Baum
be12bb81aa pythonPackages.wordfreq: 2.0 -> 2.2.0, fix build 
Previous version didn't build (test failure).
Update to latest, tests use pytest now, disable failing tests.
 2018-09-13 18:16:34 +02:00
Uli Baum
0bda601ee5 pythonPackages.pytest-rerunfailures: fix build 
some tests fail since pytest 3.7.2 -> 3.7.4 update, disable them
 2018-09-13 17:48:38 +02:00
Uli Baum
781eaa1377 pythonPackages.flask-pymongo: fix build 
add missing dependency: vcversioner
 2018-09-13 17:25:38 +02:00
Uli Baum
9e4b0b795c pythonPackages.eve: fix build, drop incorrect dependencies 
Build failed because of dependency Flask-PyMongo, which actually
isn't a dependency of eve as they have their own flask_pymongo code.

- Drop incorrect dependency flask-pymongo
- Drop redunant dependencies already propageted by flask:
  itsdangerous, werkzeug, jinja2
- Drop dependency markupsafe, not required any more
 2018-09-13 17:09:51 +02:00
Uli Baum
abe97e9446 pythonPackages.daphne: 2.1.0 -> 2.2.2 
Update, re-enable all tests on linux, disable tests on darwin.
This fixes the build of pythonPackages.channels
 2018-09-13 16:45:27 +02:00
Uli Baum
b54677969b pythonPackages.zodb: fix tests 
Tests failed after `persistent` was updated to 4.4.
Apply an upstream patch to fix them.
 2018-09-13 13:35:34 +02:00
xeji
2bc08ce0f5
Merge pull request #46488 from xeji/p/python-fixes 
pythonPackages.{pydub,readme_renderer,pyfakefs,us,restview}: fix build
 2018-09-13 11:38:20 +02:00
Uli Baum
6dc57134da pythonPackages.restview: fix tests 
Failed after readme_renderer was updated. Apply an upstream patch.
 2018-09-13 11:21:19 +02:00
xeji
68b7de9e2e
pythonPackages.BTrees: fix build (#46588) 
a test case failed since the update to 4.5.1, disable it
 2018-09-13 02:32:37 +02:00
xeji
decd819911
Merge pull request #46556 from rnhmjoj/lastpass 
qutebrowser: patch all python scripts
 2018-09-12 23:51:40 +02:00
Robert Schütz
c15a94b6d1
Merge pull request #45644 from jluttine/update-rlp-1.0.2 
pythonPackages.rlp: 1.0.1 -> 1.0.2 (with some new deps)
 2018-09-12 12:55:29 +02:00
Jörg Thalheim
63668d33b2 python-language-server: 0.19.0 -> 0.21.2 2018-09-12 09:03:08 +01:00
Jörg Thalheim
e4393102e6 python-jsonrpc-server: init at 0.0.1 2018-09-12 09:03:08 +01:00
Jörg Thalheim
8d4afa5f2e
pythonPackage.backports-shutil-which: enable tests 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
d0ce8834ae
pythonPackages.libagent: fix propagatedBuildInputs 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
80b64a2e04
pythonPackage.backports-shutil-which: init at 3.5.1 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
c9bf7f67b9
pythonPackage.pymsgbox: init at 1.0.6 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
5c9db2f02f
pythonPackages.ledgerblue: fix build inputs 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
38e86a8f1e
pythonPackages.python-u2flib-host: init at 3.0.3 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
f053daf36c
pythonPackages.rlp: fix build 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
9f8e6148c5
pythonPackages.eth-utils: init at 1.2.0 2018-09-12 08:44:18 +03:00
Jaakko Luttinen
541a13ca0a
pythonPackages.eth-typing: init at 1.1.0 2018-09-12 08:44:18 +03:00
rnhmjoj
d117e3ccd8
python.pkgs.construct: 2.8.16 -> 2.9.45 2018-09-12 03:35:26 +02:00
rnhmjoj
dca577a36c
python.pkgs.pykeepass: init at 3.0.2 2018-09-12 03:35:25 +02:00
rnhmjoj
75b2058aff
python.pkgs.pyreadability: init at 0.4.0 2018-09-12 03:23:04 +02:00
rnhmjoj
e281f0e686
python.pkgs.tldextract: init at 2.2.0 2018-09-12 03:23:04 +02:00
rnhmjoj
99dad9d7f0
python.pkgs.requests-file: init at 1.4.3 2018-09-12 03:23:04 +02:00
Maximilian Bosch
a25dcb6607 python3Packages.pyowm: fix python3 build (#46549) 
See https://hydra.nixos.org/build/80714323

Version 2.9 requires `geojson==2.x'. To allow 2.4, the constraint
required some patching using `substituteInPlace'.

Addresses #45960
 2018-09-12 01:23:36 +02:00
Ryan Mulligan
8d4248a4cb
Merge pull request #44657 from costrouc/costrouc/dask-distributed 
pythonPackages.distributed: 1.15.1 -> 1.22.1
 2018-09-11 16:05:58 -07:00
Chris Ostrouchov
027b9beb58 fixup! merge: fixing changes with nixpkgs since pull-request 2018-09-11 17:14:12 -04:00
Christopher Ostrouchov
dac171dd5d
merge: fixing changes with nixpkgs since pull-request 
- pytest-timeout: no longer requires patch
 - joblib: was improperly merged with the github merge tool (never
   using again)
 2018-09-11 14:24:59 -04:00
Jaakko Luttinen
c44504410b
pythonPackages.eth-hash: init at 0.1.14 2018-09-11 17:49:48 +03:00
nyanloutre
71a8aafbb8 pythonPackages.block-io: init at 1.1.8 2018-09-11 15:16:51 +02:00
nyanloutre
3ffca639a4 pythonPackages.base58: init at 1.0.0 2018-09-11 15:16:51 +02:00
xeji
f201f8c3fd
pythonPackages.pytestflakes: fix build (#46500) 
- disable a failing test case that looks broken
- remove pytestcache depencency that was dropped upstream
 2018-09-11 11:15:03 +02:00
Uli Baum
bd02a1931a pythonPackages.pyfakefs: fix darwin build 
One test failed on darwin due to case-insensitive file system,
disable it.
 2018-09-10 22:42:23 +02:00
Uli Baum
bc036397a3 pythonPackages.pydub: fix aarch64 build 
one test failed due to rounding errors, disable it
 2018-09-10 22:36:14 +02:00
Uli Baum
40c469e56b pythonPackages.pydub: remove obsolete patch 2018-09-10 18:19:01 +02:00
Uli Baum
80ecef8e4b pythonPackages.pydub: fix build and tests 
- remove obsolete patch that caused build failure
- no tests were run because required data files were missing in pypi
  version; use github version instead
 2018-09-10 18:05:40 +02:00
Uli Baum
d2a885a3b5 pythonPackages.pyfakefs: 3.4.1 -> 3.4.3, fix build 
Update and disable some failing test cases
 2018-09-10 17:43:18 +02:00
Uli Baum
bb1f3422e0 pythonPackages.readme_renderer: fix build 
Disable one test case that has failed since last bleach update.
 2018-09-10 17:19:05 +02:00
Uli Baum
a7166cdc35 pythonPackages.us: fix build 
Required jellyfish==0.5.6 but we have 0.6.1. Loosen requirements.
 2018-09-10 17:06:54 +02:00
Timo Kaufmann
2b6144d1ad
Merge pull request #46368 from Ma27/fix-mahotas 
pythonPackages.mahotas: fix build, move expression
 2018-09-10 11:56:50 +02:00
Maximilian Bosch
ee897b64ff
pythonPackages.mahotas: fix build, move expression 
See https://hydra.nixos.org/build/80828287

Moves `mahotas` out of `python-packages.nix` into its own file and fixes
broken test cases by skipping them using nosetest's `@nottest`
annotation.

These tests broke from time to time in a sandbox and are therefore
considered impure.

Addresses #45960
 2018-09-10 11:32:58 +02:00
Josef Kemetmüller
6f891ff66e pythonPackages.joblib: Disable flaky test (#46439) 
The test `test_nested_parallelism_limit` fails on darwin.
 2018-09-09 22:42:17 +02:00
Josef Kemetmüller
5e0c468737 pythonPackages.fiona: Fix darwin build (#46435) 2018-09-09 22:40:49 +02:00
xeji
12fae6e5c7
Merge pull request #46440 from knedlsepp/fix-pythonPackages.libusb1 
pythonPackages.libusb1: Fix darwin build
 2018-09-09 22:25:06 +02:00
Josef Kemetmüller
b633fc4fb4 pythonPackages.libusb1: Disable flaky test 2018-09-09 22:09:34 +02:00
xeji
d18aaceda6
Merge pull request #46438 from knedlsepp/fix-pythonPackages.flask_ldap_login 
pythonPackages.flask_ldap_login: Fix build
 2018-09-09 22:00:59 +02:00
Josef Kemetmüller
b667a76eac pythonPackages.flask_ldap_login: Disable on python3 2018-09-09 21:48:54 +02:00
Josef Kemetmüller
a4b040e69f pythonPackages.cozy: Disable on python2 (#46436) 
Cozy does not support python2.
 2018-09-09 21:33:45 +02:00
Josef Kemetmüller
063aa389df pythonPackages.libusb1: Fix darwin build 2018-09-09 20:56:34 +02:00
Josef Kemetmüller
25f8753bf4 pythonPackages.flask_ldap_login: 0.3.0 -> 0.3.4 2018-09-09 20:39:46 +02:00
Josef Kemetmüller
d4e89680d2 pythonPackages.flask_ldap_login: Fix build 2018-09-09 20:39:15 +02:00
Jörg Thalheim
201ee19758
Merge pull request #46377 from dasJ/nonhttp 
treewide: Use http/https for homepages
 2018-09-09 15:50:25 +01:00
xeji
17c51ef436
Merge pull request #45925 from markuskowa/ompi-up 
slurm: 17.11.9-2 -> 18.08.0-1
 2018-09-09 14:20:00 +02:00
Maximilian Bode
c020a59ccd pythonPackages.tifffile: fix python 2 build (#46415) 2018-09-09 12:13:36 +02:00
Maximilian Bode
dfcf07d9d3 pythonPackages.django-raster: fix build (#46413) 2018-09-09 11:34:18 +02:00
Jan Malakhovski
b7bd0561be Merge branch 'master' into staging 2018-09-08 22:08:32 +00:00
Markus Kowalewski
7dd2f4ec9c
pyslurm: 20180811 -> 20180908 2018-09-08 23:16:37 +02:00
xeji
113f4d7b44
pythonPackages.persistent: fix build (#46364) 
Documentation-related tests failed, the docs didn't build correctly
because of missing dependencies sphinx and manuel. Add them.
 2018-09-08 21:35:33 +02:00
Maximilian Bode
73e75a7d16 pythonPackages.confluent-kafka: fix build (#46380) 
cc #45960
 2018-09-08 21:32:04 +02:00
Janne Heß
9ef77854f7 treewide: Use http/https for homepages 2018-09-08 18:30:00 +02:00
Maximilian Bosch
a02002deba pythonPackages.pycaption: fix build (#46356) 
The `beaitufulsoup4` package distributed by `nixpkgs` is now at `4.6.3`.

Additionally it fixes `gnomecaption` which depends on the broken
`pycaption` package.

See https://hydra.nixos.org/build/81000247
See https://hydra.nixos.org/build/80723223

Addresses #45960
 2018-09-08 11:20:47 +02:00
Maximilian Bosch
218ac50fd4 pythonPackages.trio: fix build (#46342) 
Fixes the build for `python3Packages.trio' for the next ZHF iteration.
Please refer to the Hydra build for further reference: https://hydra.nixos.org/build/80617356

`python3Packages.sniffio` is needed for the build, otherwise the build
aborts with an error like this:

```
  Could not find a version that satisfies the requirement sniffio (from trio==0.6.0) (from versions: )
No matching distribution found for sniffio (from trio==0.6.0)
```

See #45960
 2018-09-08 01:02:55 +02:00
Alexey Shmalko
e5e4fd8ede
Merge pull request #46327 from costrouc/costrouc/markerlib 
pythonPackages.markerlib: init at 0.6.0
 2018-09-07 23:38:16 +03:00
Chris Ostrouchov
2895560f4f
pythonPackages.markerlib: init at 0.6.0 2018-09-07 14:08:35 -04:00
xeji
6f3ff5acc7
Merge pull request #46186 from costrouc/costrouc/python-ncclient 
pythonPackages.ncclient: refactor + init pythonPackages.selectors2
 2018-09-07 17:33:58 +02:00
Chris Ostrouchov
a726956b42
pythonPackages.ncclient: refactor 
adding selectors2 as dependency of ncclient. Added recently 20 days
ago in August. 8ef20f2828
 2018-09-07 10:22:22 -04:00
Chris Ostrouchov
11c3fe2258
pythonPackages.selectors2: init at 2.0.1 
Added package becuase now dependency of ncclient.
 2018-09-07 10:22:22 -04:00
Andrey Golovizin
2bec98ae06 pythonPackages.psycopg2: 2.7.1 -> 2.7.5 2018-09-07 15:40:34 +02:00
Daniël de Kok
d261df5fc1 python2Packages.spacy_models: update all models to version 2.0.0 (#46182) 
Update the model list to those models that are compatibly with the
latest spaCy version:

https://github.com/explosion/spacy-models/blob/master/compatibility.json

The updated model file evaluates to the following packages:

python2Packages.spacy_models.de_core_news_sm
python2Packages.spacy_models.en_core_web_lg
python2Packages.spacy_models.en_core_web_md
python2Packages.spacy_models.en_core_web_sm
python2Packages.spacy_models.en_vectors_web_lg
python2Packages.spacy_models.es_core_news_md
python2Packages.spacy_models.es_core_news_sm
python2Packages.spacy_models.fr_core_news_md
python2Packages.spacy_models.fr_core_news_sm
python2Packages.spacy_models.it_core_news_sm
python2Packages.spacy_models.nl_core_news_sm
python2Packages.spacy_models.pt_core_news_sm
python2Packages.spacy_models.xx_ent_wiki_sm
python3Packages.spacy_models.de_core_news_sm
python3Packages.spacy_models.en_core_web_lg
python3Packages.spacy_models.en_core_web_md
python3Packages.spacy_models.en_core_web_sm
python3Packages.spacy_models.en_vectors_web_lg
python3Packages.spacy_models.es_core_news_md
python3Packages.spacy_models.es_core_news_sm
python3Packages.spacy_models.fr_core_news_md
python3Packages.spacy_models.fr_core_news_sm
python3Packages.spacy_models.it_core_news_sm
python3Packages.spacy_models.nl_core_news_sm
python3Packages.spacy_models.pt_core_news_sm
python3Packages.spacy_models.xx_ent_wiki_sm
 2018-09-07 12:58:53 +02:00
Christopher Ostrouchov
66e1288962 pythonPackages.kubernetes: add missing dependency (#46179) 
fix build issue from missing dependency `adal`. This is due to `adal`
being added as a dependency in July
23rd. 9afec55f4a (diff-b4ef698db8ca845e5845c4618278f29a)
 2018-09-07 11:25:53 +02:00
Christopher Ostrouchov
427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June c0b9308988.
 2018-09-07 09:26:07 +02:00
Christopher Ostrouchov
6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov
b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov
b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
Christopher Ostrouchov
7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
Chris Ostrouchov
1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Matthieu Coudron
13050ccc0b python3Packages.genanki: init at 0.6.0 
Library to generate anki flashcards.
 2018-09-06 18:31:57 +02:00
Jörg Thalheim
89571b255e
Merge pull request #45996 from teto/alot_completion 
[rdy] pythonPackages.alot: install zsh completion
 2018-09-06 11:28:09 +01:00
qolii
9f0efc084c pyopenssl: Disable some tests, for libressl support. (#46072) 2018-09-06 11:02:48 +01:00
Jörg Thalheim
9a585658e2
Merge pull request #46132 from costrouc/costrouc/pymatgen-networkx-dependency 
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1
 2018-09-06 09:55:18 +01:00
Sarah Brofeldt
a59f244b2c
Merge pull request #46126 from flokli/gmpy-phe 
pythonPackages: cleanup gmpy[2], add phe
 2018-09-06 10:31:56 +02:00
Sarah Brofeldt
574f893507
Merge pull request #46124 from erosennin/pymetar-1.0 
pythonPackages.pymetar: 0.21 -> 1.0
 2018-09-06 10:26:32 +02:00
Jörg Thalheim
df2cc4121b
Merge pull request #46125 from ashgillman/nipype-futures-py2-only 
python.pkgs.nipype: Futures is python 2 only. Also fix building.
 2018-09-06 08:25:33 +01:00
Chris Ostrouchov
63cf879d6c
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Christopher Ostrouchov
ed130935c8
Merge branch 'master' into costrouc/dask-distributed 2018-09-05 23:53:23 -04:00
Chris Ostrouchov
4f70170f8a
pythonPackages.distributed: 1.15.1 -> 1.22.1 
The github repository was downloaded instead of the pypi repository
for testing (needed `conftest.py`). Major work was done on the
underlying dependencies to make distributed work on python 2.7,
3+. Note that the test **do** take a significant amount of time (10-15
minutes).

 - moved to `python-modules`
 - compatible with 2.7, 3+
 - all tests pass (previously tests were not run)
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
7b920172db
pythonPackages.pytest-repeat: init at 0.6.0 
- compatible with 2.7, 3+
 - all tests pass and running
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
05890dda3d
pythonPackages.joblib: 0.12.1 -> 0.12.2 
In order to get all the tests passing the Github repository was
downloaded instead of from pypi so that the `conftest.py` is
available.

In addition to updating the version:

  - compatible with 2.7, 3+ now
  - all tests are running and passing
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
3a56e314b8
pythonPackages.python-lz4: init at 2.1.0 
Fetching from github repository instead of pypi so that all tests can
be run.

 - compatible with 2.7, 3+
 - all tests pass
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
5704642a3f
pythonPackages.pytest-faulthandler: init at 1.5.0 
- compatible with 2.7 and 3+
 - all test pass.
 2018-09-05 23:46:28 -04:00
Florian Klink
e053386c92 gmpy2: 2.0.6 -> 2.0.8 
Also move outside python-packages.nix
 2018-09-05 23:56:20 +02:00
Florian Klink
7339a4004c gmpy: move outside python-packages.nix 2018-09-05 23:56:20 +02:00
Florian Klink
f051f66c9a phe: init at 1.4.0 2018-09-05 23:56:20 +02:00
Robert Schütz
041043420f python.pkgs.py3status: fix build 2018-09-05 23:28:31 +02:00
Ashley Gillman
12c0dd5432 python.pkgs.nipype: Futures is python 2 only. Also fix building. 2018-09-05 22:26:34 +01:00
Andrey Golovizin
7de5708e9e pythonPackages.pymetar: enable tests 2018-09-05 23:08:47 +02:00
Andrey Golovizin
ee841c57bf pythonPackages.pymetar: 0.21 -> 1.0 2018-09-05 22:32:57 +02:00
Andrey Golovizin
085cc29323 pythonPackages.pymetar: fix license 2018-09-05 22:32:49 +02:00
Jethro Kuan
a9a380b259 pythonPackages.tflearn: 0.2.1 -> 0.3.2 (#46102) 2018-09-05 17:38:23 +01:00
Daniël de Kok
348a153781 pythonPackages.thinc: fix darwin build (#46092) 
thinc uses Accelerate on macOS as a blas library. Add the necessary
dependencies to allow building on unsandboxed Darwin machines.
 2018-09-05 16:22:52 +02:00
Daniël de Kok
da8475736e spacy: relax dependency versions 2018-09-05 10:39:03 +02:00
Daniël de Kok
ffb094f939 thinc: relax dependency version requirements 2018-09-05 10:29:01 +02:00
Andreas Rammhold
d814c98ec8 python.pkgs.pytest-fixture-config: disable tests (#46021) 
Tests seem to fail on all recent versions even outside of our build
system. The upstream CI tests seem to somehow succeed but I wasn't able
to reproduce that locally. For not it is probably best to disable them.
 2018-09-05 01:02:06 +02:00
Frederik Rietdijk
b75ea627c6 pythonPackages.autobahn: run hooks 2018-09-04 19:18:13 +02:00
Frederik Rietdijk
20a4a4b593 pythonPackages.pytest.setupHook: run in correct phase 
It was reported that the 2nd solution wasn't working as expected because
it was ran in the wrong phase.

This commit creates a new phase, in between the installCheckPhase and distPhase.
 2018-09-04 19:18:13 +02:00
xeji
d22e22e2dd
Merge pull request #45987 from danieldk/fix-vowpalwabbit 
vowpalwabbit: fix build against boost-python.
 2018-09-04 08:54:00 +02:00
Daniël de Kok
69d418aeac vowpalwabbit: mark broken on aarch64. 2018-09-04 07:43:53 +02:00
Michiel Leenaars
9692b7997c pythonPackages.authres: fix broken homepage 2018-09-03 23:52:27 +02:00
Daniël de Kok
e33be2ab56 Keras: fix build by updating expected dependencies. (#45992) 
Keras expects keras_preprocessing 1.0.2 and 1.0.4. 1.0.3 and 1.0.5
are respectively in nixpkgs.

ZHF #45960
 2018-09-03 21:59:36 +02:00
Daniël de Kok
fe7e89ba3b vowpal-wabbit: fix Darwin build. 
- Follow the same logic for finding boost-python as for Linux.
- Set DYLD_LIBRARY_PATH so that ctypes find_library can find
  boost-python.
- Do not use '-mt' suffix when linking against boost-serialization
  and boost-program_options on Darwin.
 2018-09-03 21:48:13 +02:00
Matthieu Coudron
97816bed33 pythonPackages.alot: install zsh completion 2018-09-04 02:22:58 +09:00
Daniël de Kok
875bb6bcb9 vowpalwabbit: fix build against boost-python. 
Patch setup.py to look for libboost_python{Major}{Minor}.
 2018-09-03 15:47:04 +02:00
Jörg Thalheim
d1c6c32230
Merge pull request #45964 from Mic92/irc 
python.pkgs.irc: 14.2.2 -> 16.4
 2018-09-03 01:36:07 +01:00
Jörg Thalheim
35c9408ca4 python.pkgs.irc: 14.2.2 -> 16.4 2018-09-03 01:25:03 +01:00
Jörg Thalheim
9bc1b13983 python.pkgs.jaraco_logging: 1.5 -> 1.5.2 2018-09-03 01:25:03 +01:00
Jörg Thalheim
7cd2bf48f7 python.pkgs.jaraco_text: 1.7 -> 1.10.1 2018-09-03 01:25:02 +01:00
Jörg Thalheim
c4bf056c08 python.pkgs.jaraco.collections: 1.3.2 -> 1.5.3 2018-09-03 01:25:02 +01:00
Jörg Thalheim
6b1b6c84bf python.pkgs.jaraco.itertools: 1.7.1 -> 2.4 2018-09-03 01:25:02 +01:00
Jörg Thalheim
b3e9520a0c python.pkgs.jaraco.classes: 1.4 -> 1.5 2018-09-03 01:25:01 +01:00
Jörg Thalheim
97b73d6a58 python.pkgs.jaraco.stream: 1.1.1 -> 1.2 2018-09-03 01:25:01 +01:00
Jörg Thalheim
8e15622cf3 python.pkgs.inflect: 0.2.5 -> 1.0.0 2018-09-03 01:25:01 +01:00
Ryan Mulligan
7b54a50e97
Merge pull request #45730 from Helkafen/snakemake 
snakemake: init at 5.2.2
 2018-09-02 07:54:13 -07:00
Tobias Happ
e6a3ad775f pythonPackages.dependency-injector: init at 3.13.1 (#45871) 2018-09-01 17:29:47 +02:00
Vladimír Čunát
355f19653c
pythonPackages.more-itertools: avoid doCheck on i686 
I expect noone will want to spend time really fixing these,
but it blocks wine from building...
 2018-09-01 15:08:53 +02:00
Frederik Rietdijk
4134048b6f Merge master into staging-next 2018-09-01 10:41:58 +02:00
Frederik Rietdijk
43f6ceabb8 pythonPackages.pandas: fix build 2018-09-01 10:41:37 +02:00
Robert Schütz
5a9270fe57 python.pkgs.h5py: disable tests 2018-09-01 10:41:37 +02:00
Robert Schütz
de151625f2 python.pkgs.natsort: no pyflakes and pep8 checks 2018-09-01 10:41:37 +02:00
Robert Schütz
6c9f7e2742 python.pkgs.cairocffi: remove superfluous patch 2018-09-01 10:41:37 +02:00
Robert Schütz
5a7e9c8237 python.pkgs.celery: fix tests 2018-09-01 10:41:37 +02:00
Robert Schütz
30970aa039 python.pkgs.keyrings-alt: fix tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0840e427e6 pythonPackages.bottleneck: get rid of warnings during tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
39ca3eb666 pythonPackages.cmd2: fix build 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
1c66e6d76d pythonPackages.moto: fix build 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
32492d9189 Python: fix botocore/boto3/awscli mess 
Revert "pythonPackages.boto3: 1.7.84 -> 1.8.4"

This reverts commit 06b37899300e0800e7a0ea632fcb5bf0f291e003.

Revert "python: botocore: 1.11.1 -> 1.11.4"

This reverts commit 3b0242d4c014a440b8c1c58cae812dc84496cc95.

Revert "python: botocore: 1.10.75 -> 1.11.1"

This reverts commit 996fd79967.

Revert "awscli: 1.16.1 -> 1.16.4"

This reverts commit 4880df9078bf024fd5a98afa8c6f28833e13f3d3.

Revert "awscli: 1.15.66 -> 1.16.1"

This reverts commit 6923bc8d23.

awscli: fix build

pythonPackages.botocore: 1.10.75 -> 1.10.84
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
f823ca5752 pythonPackages.scipy: disable tests 
We should try to get these enabled again asap.
https://github.com/scipy/scipy/pull/8871#issuecomment-417391433
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
ee5bff207f Revert "python.pkgs.python-jose: 2.0.2 -> 3.0.0" 
This breaks moto.

This reverts commit a6d3577d3d.
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7f50451d3c Revert "python: shippai: 0.2.3 -> 0.3.1" 
This broke vdirsyncer.

This reverts commit 0bca28c890.
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
5918fc4601 pythonPackages.cement: disable Python 2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
57f1adc414 pythonPackages.boto3: 1.7.84 -> 1.8.4 2018-09-01 10:41:37 +02:00
Robert Schütz
a8d69de93f python.pkgs.sarge: disable tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
503f808870 pythonPackages.pytestrunner: failed attempt at enabling tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
37afcbf0f5 pythonPackages.folium: add missing numpy runtime dependency 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0666f784ee pythonPackages.boto3: 1.7.57 -> 1.7.84 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
a0d69a5642 python: XlsxWriter: 1.0.7 -> 1.0.9 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
997cb5c3cf python: typing: 3.6.4 -> 3.6.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7560a6f753 python: Sphinx: 1.7.7 -> 1.7.8 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
e8adeef855 python: sockjs-tornado: 1.0.3 -> 1.0.5 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
cdccb7b650 python: regex: 2018.08.17 -> 2018.08.29 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
36cd6f2bd5 python: pytest-timeout: 1.3.1 -> 1.3.2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
8a6b20cbad python: pytest: 3.7.2 -> 3.7.4 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
630fd86bc7 python: phonenumbers: 8.9.11 -> 8.9.12 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
e8ff5774aa python: persistent: 4.4.1 -> 4.4.2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
88800b80f0 python: openpyxl: 2.5.5 -> 2.5.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
92855be2de python: moto: 1.3.4 -> 1.3.5 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0075504e55 python: jupyterlab: 0.34.2 -> 0.34.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
68b99fc377 python: joblib: 0.12.2 -> 0.12.3 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
d126f735f1 python: Faker: 0.8.17 -> 0.8.18 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7677c18e19 python: dftfit: 0.4.11 -> 0.4.22 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
8d67b3f2ee python: deform: 2.0.5 -> 2.0.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
1708c82213 python: botocore: 1.11.1 -> 1.11.4 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
b92d2f6057 python: aws-adfs: 0.12.0 -> 0.12.1 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0abb01085d python: absl-py: 0.4.0 -> 0.4.1 2018-09-01 10:41:37 +02:00
Robert Schütz
dc707e41e4 python.pkgs.pyqrcode: init at 1.2.1 2018-08-31 19:07:35 +02:00
Robert Schütz
09cced6725 python.pkgs.pyotp: init at 2.2.6 2018-08-31 19:07:35 +02:00
Robert Schütz
93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
Robert Schütz
2b5659dc04 python.pkgs.ecpy: 0.9.0 -> 0.9.1 2018-08-31 15:56:52 +02:00
John Ericson
2c4a75e9ef
Merge pull request #45820 from obsidiansystems/dont-use-obsolete-platform-aliases 
treewide: Dont use obsolete platform aliases
 2018-08-31 09:56:10 -04:00
Silvan Mosberger
f7606a82ed
Merge pull request #43437 from MostAwesomeDude/cozy 
Cozy
 2018-08-31 15:29:41 +02:00
Sebastian Meric de Bellefon
c49e507bbc python.pkgs.ratelimiter: init at 1.2.0.post0 2018-08-31 08:57:28 -04:00
Sarah Brofeldt
7590d8b332
Merge pull request #45851 from mpickering/folium-0.6.0 
folium: 0.5.0 -> 0.6.0
 2018-08-31 11:31:56 +02:00
Matthew Pickering
9b375a34e5 folium: 0.5.0 -> 0.6.0 2018-08-31 08:40:13 +00:00
Sarah Brofeldt
582507627f pythonPackages.httpsig: init at 1.2.0 2018-08-30 20:46:54 -07:00
John Ericson
0828e2d8c3 treewide: Remove usage of remaining redundant platform compatability stuff 
Want to get this out of here for 18.09, so it can be deprecated
thereafter.
 2018-08-30 17:20:32 -04:00
Robert Schütz
a9780a095b Merge branch 'master' into staging-next 2018-08-30 21:56:13 +02:00
Bastian Köcher
d87c8f6cad pythonPackages.gst-python: 1.14.0 → 1.14.2 2018-08-30 20:40:07 +02:00
Frederik Rietdijk
ca6442bc33
Merge pull request #45732 from marsam/feature/update-pywatchman 
pythonPackages.pywatchman: 1.3.0 -> 1.4.1
 2018-08-30 17:54:53 +02:00
teh
8c3514609b pytorch: 0.4.0 -> 0.4.1 (#45773) 
Also disable tests that fail in sandbox.
 2018-08-30 17:30:29 +02:00
Robert Schütz
4b4c871401 buttersink: move out of pythonPackages (#45783) 2018-08-30 16:33:53 +02:00
Robert Schütz
74495e4f3a python.pkgs.plotly: fix build 2018-08-30 15:26:18 +02:00
Robert Schütz
523a7c879f python.pkgs.backports_lzma: fix tests 2018-08-30 14:54:48 +02:00
Robert Schütz
ab772d066d python.pkgs.docker_registry: remove 
It has been deprecated for 4 years.
 2018-08-30 14:54:48 +02:00
Frederik Rietdijk
6038628ea5 Merge master into staging-next 2018-08-29 20:54:55 +02:00
Mario Rodas
58db095c86 pythonPackages.pywatchman: move to python-modules 
pywatchman is licensed under BSD-3

    150f1fb4ef
 2018-08-29 10:06:02 -05:00
José Romildo Malaquias
4637166ead pythonefl: uses python.interpreter 2018-08-28 21:42:30 -03:00
José Romildo Malaquias
4f82d135f7 pythonefl: move out of python-packages.nix 
- Move out of pkgs/top-level/python-packages.nix into
pkgs/development/python-modules/python-efl/default.nix.

- Add dependency on dbus-python.

- Remove hardeningDisable.

- Update some meta attributes.
 2018-08-28 19:34:20 -03:00
Frederik Rietdijk
7945295410 Merge master into staging 2018-08-27 08:21:50 +02:00
Timo Kaufmann
0e4160a3a1 pythonPackages.sympy: 1.1.1 -> 1.2 2018-08-26 19:56:44 +02:00
Frederik Rietdijk
b61b993b75 Merge master into staging 2018-08-26 12:10:05 +02:00
Bas van Dijk
954eb34a53 elasticsearch-curator: explain why we disable the test-suite 2018-08-26 01:20:15 +02:00
Bas van Dijk
d5e7d48f5e requests-aws4auth: only disable tests on python >= 3 2018-08-26 01:12:16 +02:00
Frederik Rietdijk
c71942eb7e
Merge pull request #44752 from costrouc/costrouc/lammps-update 
material science packages (init and update): lammps, python - ase, pymatgen-lammps, lammps-cython, dftfit
 2018-08-25 19:03:36 +02:00
Bas van Dijk
8aa3318741 elasticsearch-curator: disable test-suite because it hangs 2018-08-25 18:53:10 +02:00
Bas van Dijk
61b646741c pythonPackages.requests-aws4auth: init at 0.9 
Needed by elasticsearch-curator.
 2018-08-25 18:53:10 +02:00
Bas van Dijk
16ce3c8f74 elasticsearch-curator: include missing boto3 dependency 
TODO: we're still missing the requests-aws4auth>=0.9 dependency
 2018-08-25 18:53:10 +02:00
Frederik Rietdijk
99696fb9a0 python: numexpr: 2.6.7 -> 2.6.8 2018-08-25 18:48:05 +02:00
Frederik Rietdijk
f68a5ec9b5 pythonPackages.bootstrapped-pip: setuptools: 40.0.0 -> 40.2.0 2018-08-25 18:07:19 +02:00
Frederik Rietdijk
c8d0c5fdec pythonPackages.pytest-asyncio: fix build 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
167c0d347b python: XlsxWriter: 1.0.5 -> 1.0.7 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
0ae1f52282 python: websocket_client: 0.48.0 -> 0.51.0 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
7f22dae41c python: vega: 1.3.0 -> 1.4.0 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
793c455b98 python: typeguard: 2.2.1 -> 2.2.2 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
de92954d5d python: trio: 0.5.0 -> 0.6.0 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
e671f6bb61 python: tqdm: 4.24.0 -> 4.25.0 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
587f70cbfe python: svg.path: 2.2 -> 3.0 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
b99101d9cc python: stripe: 2.4.0 -> 2.6.0 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
e5e1408c78 python: SQLAlchemy: 1.2.10 -> 1.2.11 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
c0b4ff3902 python: Sphinx: 1.7.6 -> 1.7.7 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
594d2c7ee9 python: soco: 0.15 -> 0.16 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
d9cb046ac8 python: setuptools: 40.0.0 -> 40.2.0 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
c65f6a473e python: s3fs: 0.1.5 -> 0.1.6 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
5c0ebe6446 python: reportlab: 3.5.2 -> 3.5.6 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
9fd849c3b9 python: reikna: 0.7.0 -> 0.7.1 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
b834f91ce5 python: regex: 2018.07.11 -> 2018.08.17 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
8ae4298972 python: qtconsole: 4.3.1 -> 4.4.1 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
db3c5b485a python: python-docx: 0.8.6 -> 0.8.7 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
319d15e044 python: python-daemon: 2.1.2 -> 2.2.0 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
2f9a3664a4 python: pytest-xdist: 1.22.5 -> 1.23.0 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
617c8ee925 python: pytest: 3.7.1 -> 3.7.2 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
6a2f30ab54 python: Pyphen: 0.9.4 -> 0.9.5 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
467df25af5 python: pyodbc: 4.0.23 -> 4.0.24 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
04bf203b9a python: pyhomematic: 0.1.46 -> 0.1.47 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
5544e3bfc1 python: pycryptodomex: 3.6.5 -> 3.6.6 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
45c173e487 python: pycryptodome: 3.6.5 -> 3.6.6 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
ecb7d5c7b3 python: psutil: 5.4.6 -> 5.4.7 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
31ee6d82dc python: pkgconfig: 1.3.1 -> 1.4.0 2018-08-25 18:07:14 +02:00