R. RyanTM
9974067129
gmsh: 4.5.2 -> 4.5.4
2020-03-05 00:20:08 +00:00
Mario Rodas
5760e001ca
Merge pull request #81706 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.21.8 -> 2.22.0
2020-03-04 07:26:05 -05:00
R. RyanTM
343ec80712
picard-tools: 2.21.8 -> 2.22.0
2020-03-04 09:58:40 +00:00
Gabriel Ebner
0d470dc5ea
Merge pull request #81692 from r-ryantm/auto-update/lean
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lean: 3.6.0 -> 3.6.1
2020-03-04 10:32:38 +01:00
R. RyanTM
5b833c08ef
lean: 3.6.0 -> 3.6.1
2020-03-04 06:26:01 +00:00
Aiken Cairncross
3db82f6fc3
python3Packages.monosat: Fix hash
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PR #81562 inadvertently broke these builds
2020-03-03 11:02:23 -08:00
markuskowa
dbb9fab27f
Merge pull request #81604 from markuskowa/upd-octopus
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octopus: 9.1 -> 9.2
2020-03-03 12:45:16 +01:00
markuskowa
4822d61252
Merge pull request #80977 from r-ryantm/auto-update/quantum-espresso
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quantum-espresso: 6.4.1 -> 6.5
2020-03-03 11:09:30 +01:00
Markus Kowalewski
eebd6fe75a
octopus: 9.1 -> 9.2
2020-03-03 10:54:23 +01:00
Aiken Cairncross
2148a154c6
python3Packages.monosat: Fix Python 3.8 build
2020-03-03 07:40:57 +01:00
Brenton Horne
b07eb54048
marvin: 20.4.0 -> 20.6.0
2020-03-02 21:50:25 +01:00
Jan Tojnar
f27031f48f
Merge pull request #81063 from NixOS/netpbm
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netpbm: 10.82.01 → 10.89.1
2020-03-02 19:26:25 +01:00
scalavision
dbb4826457
truvari:1.3.2->1.3.4
2020-03-02 09:15:58 +01:00
Jan Tojnar
9555834399
netpbm: split into multiple outputs
2020-03-01 15:13:03 +01:00
Matthieu Coudron
05b6836816
torchPackages, torch-repl: remove
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See https://github.com/NixOS/nixpkgs/issues/71888
and https://github.com/NixOS/nixpkgs/issues/56398
To sump up, development has moved on to other technologies than lua:
https://github.com/torch/torch7#development-status
and the current packages are broken anyway.
2020-02-28 20:56:42 +01:00
Austin Seipp
7e66ce29bf
mcy: init at 2020.02.05
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Austin Seipp
3d8efecda1
symbiyosys: fix calls to external programs
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48085826f
broke symbiyosys when it needed to call `yosys-abc`: when
`ABCEXTERNAL` is set in the Makefile, then `yosys-abc` is not built.
But in general `sby` was just calling programs out of the ambient
environment. Fix that for most programs it can invoke: it now has a
direct dependency on boolector, aiger, abc, yosys, etc.
This also does some other minor clean up.
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Mario Rodas
79f057e2eb
lean: 3.5.1 -> 3.6.0
2020-02-26 18:00:00 -05:00
Dmitry Kalinkin
b9ee6cd85c
Merge pull request #80640 from smaret/gildas-20200201a
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gildas: 20200101_a -> 20200201_a
2020-02-25 10:26:18 -05:00
R. RyanTM
56d58ecb24
quantum-espresso: 6.4.1 -> 6.5
2020-02-24 19:40:14 +00:00
R. RyanTM
4080e7976e
gtkwave: 3.3.103 -> 3.3.104
2020-02-24 11:43:54 -06:00
Linus Heckemann
0cc83f884a
Merge pull request #80292 from bcdarwin/mrtrix
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mrtrix: init at 3.0_RC3_latest
2020-02-24 13:52:38 +01:00
Timo Kaufmann
f4dbf4402b
Merge pull request #80759 from Thra11/fix-r
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Fix R
2020-02-23 23:48:21 +00:00
Tom Hall
ae9e09a2e1
R: fix build on aarch64 by removing a failing test
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I believe this test is currently incorrect on aarch64 and expects a
warning about loss of precision with much smaller numbers than the
platform's long doubles can handle.
2020-02-22 13:17:40 +00:00
Edward Tjörnhammar
9b6faedb18
shogun: 6.0.0 -> 6.1.4
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Also migrate to opencv3 to address #72739 , the PR didn't build for me.
Disable testing and ccache since they were broken.
Co-authored-by: Robert Scott <code@humanleg.org.uk>
2020-02-21 11:05:09 +01:00
Sébastien Maret
7667207f3d
gildas: 20200101_a -> 20200201_a
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- Upgrade gildas to the latest version
- Remove a patch that has been included upstream
- Re-enable parallel building (fixed upstream)
2020-02-20 15:28:57 +01:00
Gabriel Ebner
f098b0dd2c
Merge pull request #80576 from bhipple/u/rust-cargo-elan
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elan: upgrade cargo fetcher and cargoSha256
2020-02-20 09:53:49 +01:00
Maximilian Bosch
7bdc103ac8
geogebra: 5-0-570-0 -> 5-0-573-0
2020-02-20 03:09:06 +01:00
Benjamin Hipple
ed85c9981a
elan: upgrade cargo fetcher and cargoSha256
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Infra upgrade as part of #79975 ; ran `nixpkgs-review wip` successfully.
2020-02-19 18:17:27 -05:00
Tom Hall
4e5aeca90b
R: Enable java support on all platforms
2020-02-19 22:57:41 +00:00
Ben Darwin
9a2cd20478
mrtrix: init at 3.0_RC3_latest
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This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169 ), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.
Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
2020-02-16 22:25:25 -05:00
Daniel Schaefer
1e613230d2
Merge pull request #80122 from r-ryantm/auto-update/kallisto
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kallisto: 0.46.1 -> 0.46.2
2020-02-15 22:41:15 +01:00
R. RyanTM
4c6c40d96a
kallisto: 0.46.1 -> 0.46.2
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Co-authored-by: Daniel Schaefer <git@danielschaefer.me>
2020-02-15 22:39:58 +01:00
Junyoung Clare Jang
b71c03e483
lean: 3.4.2 -> 3.5.1
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3.4.2 is not compilable with GCC >= 9.1
2020-02-15 02:29:12 -05:00
R. RyanTM
d54a58a2cd
verilator: 4.026 -> 4.028
2020-02-14 12:13:04 -06:00
Benjamin Hipple
eb11feaa0b
treewide: change fetchCargoTarball default to opt-out
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Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.
This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.
See #79975 for details.
2020-02-13 22:41:37 -08:00
Dmitry Kalinkin
5f2a3bef33
Merge pull request #79778 from jbedo/delly
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delly: 0.8.1 -> 0.8.2
2020-02-11 03:54:02 -05:00
Justin Bedo
a8fe9e7aff
delly: 0.8.1 -> 0.8.2
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Backported patch required for htslib 1.10.2
2020-02-11 19:21:59 +11:00
Ryan Mulligan
b99e12f4fe
Merge pull request #79534 from r-ryantm/auto-update/last
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last: 1045 -> 1047
2020-02-10 18:10:08 -08:00
Brenton Horne
567be48707
marvin: 20.3.0 -> 20.4.0
2020-02-10 19:55:13 +01:00
Evils
d3a9e634bf
kicad-unstable: update update.sh && update
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use /tmp instead of XDG_RUNTIME_DIR
which is /run/user/1000, which defaults to 10% of RAM
and kicad-packages3d needs ~6gb
2020-02-10 19:54:38 +01:00
Evils
a9942b0226
kicad: simplify component names
2020-02-10 19:54:38 +01:00
Ben Darwin
39f0e3b32b
minc_tools: enable building conversion tools
2020-02-10 19:53:25 +01:00
Ben Darwin
bcad453bcf
minc_tools: 2017-09-11 -> unstable-2019-12-04
2020-02-10 19:53:25 +01:00
R. RyanTM
e988c072be
clp: 1.17.3 -> 1.17.5
2020-02-10 13:24:22 +01:00
R. RyanTM
1d4fd7f5f2
verifast: 18.02 -> 19.12
2020-02-09 14:29:31 -06:00
R. RyanTM
3a1098e3e2
pcb: 4.2.1 -> 4.2.2
2020-02-09 16:49:13 +01:00
Frederik Rietdijk
3846896084
Merge pull request #79293 from NixOS/staging-next
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Staging next (with glibc 2.30)
2020-02-09 16:40:16 +01:00
Ryan Mulligan
c9cf351871
Merge pull request #79479 from r-ryantm/auto-update/workcraft
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workcraft: 3.1.9 -> 3.2.5
2020-02-09 06:37:47 -08:00
Frederik Rietdijk
531a48ebdb
Merge master into staging-next
2020-02-09 11:00:29 +01:00