This makes those files a bit easier to read. Also, for what it's worth,
it brings us one baby step closer to handling spaces in store paths.
Also, I optimized handling of many transitive deps with read. Probably,
not very beneficial, but nice to enforce the pkg-per-line structure.
Doing so let me find much dubious code and fix it.
Two misc notes:
- `propagated-user-env-packages` also needed to be adjusted as
sometimes it is copied to/from the propagated input files.
- `local fd` should ensure that file descriptors aren't clobbered
during recursion.
