Justin Bedo
71eeb7ee56
Merge remote-tracking branch 'origin/master' into r-updates
2021-10-17 21:41:51 +11:00
Justin Bedo
b1d8a801a0
rPackages.mzR: fix aarch64-linux build
2021-10-16 07:44:35 +11:00
Justin Bedo
e26f35b8ce
rPackages.h2o: disable JAR fetching while in nix build
2021-10-15 11:22:46 +11:00
Justin Bedo
4c96ee566d
rPackages.CNEr: fix build
2021-10-13 07:02:08 +11:00
Justin Bedo
db5b03ba89
rPackages.EMCluster: fix build
2021-10-13 06:59:10 +11:00
Justin Bedo
0e6a38a1b0
rPackages.DiffBind: fix build
2021-10-13 06:56:35 +11:00
Justin Bedo
a644e88ab4
rPackages.DirichletMultinomial: fix build
2021-10-13 06:51:43 +11:00
Justin Bedo
7af2111792
rPackages.proj4: mark as broken
2021-10-12 09:05:10 +11:00
Justin Bedo
09730dc399
rPackages.av: mark as broken
2021-10-12 08:37:18 +11:00
Justin Bedo
403bcccbb3
rPackages.R_cache: shift override to requiring home framework
2021-10-12 08:18:04 +11:00
Justin Bedo
83ada1edee
rPackages: mark R.cache depenencies as requiring home
2021-10-12 08:15:26 +11:00
Justin Bedo
6dbe815676
rPackages.keyring: fix build
2021-10-12 08:14:36 +11:00
Justin Bedo
95c7c9555a
rPackages.mzR: fix build
2021-10-12 08:14:36 +11:00
Justin Bedo
07bf8a26b7
rPackages.x13binary: mark broken
2021-10-11 22:26:11 +11:00
Justin Bedo
a50b96d990
rPackages.ggiraph: fix build
2021-10-11 22:21:25 +11:00
Justin Bedo
e6bf94c615
rPackages.OmnipathR: fix build
2021-10-11 22:11:22 +11:00
Justin Bedo
7f9e8c1d42
rPackages.NetLogoR: mark as broken
2021-10-11 22:10:41 +11:00
Justin Bedo
2ab8998641
rPackages.MatchIt: backport build patch
2021-10-11 22:10:41 +11:00
Justin Bedo
22e4ee209e
rPackages: unpin all GSL 1 dependencies
...
All packages now successfully build against current GSL.
2021-10-11 22:10:41 +11:00
Justin Bedo
5e49d8461a
rPackages.rgl: mark as broken
2021-10-11 22:10:40 +11:00
Thomas Churchman
c417b44d83
rPackages: introduce packagesRequiringHome override
...
Some R packages require access to a home directory to pass install tests. Extend
r-modules to allow creating a temporary home directory for packages with
such requirements.
2021-10-11 18:23:42 +11:00
Justin Bedő
68f25d5a86
Merge pull request #140170 from marsam/r-hydra
...
R: don't restrict hydraPlatforms
2021-10-07 08:54:26 +11:00
Peter Simons
d8e6e07af0
r-httpuv: add missing zlib.dev dependency to fix the build
2021-10-04 08:04:02 +02:00
Mario Rodas
4662abd3b4
R: don't restrict hydraPlatforms
...
The restriction of hydraPlatforms was added in [1: ef05fad51aef05fad51a
2021-10-01 04:20:00 +00:00
Justin Bedo
831fa2f7b9
rPackages.csaw: fix build
2021-09-27 18:17:57 +10:00
Justin Bedo
5ed5a62cae
rPackages.Rhtslib: passthrough libcurl to dependents correctly
2021-09-27 18:17:52 +10:00
Justin Bedo
a0802ef5a5
rPackages.gaston: fix build
2021-09-27 18:17:45 +10:00
Justin Bedo
ff0b840c6c
rPackages.Rbowtie: fix build
2021-09-27 18:17:40 +10:00
Justin Bedo
c60aa79a64
rPackages.spp: fix build
2021-09-27 18:17:35 +10:00
Justin Bedo
2bed59ab86
rPackages.loon: fix build
2021-09-27 18:17:30 +10:00
Justin Bedo
17ffaf2a07
rPackages.arrangements: fix build
2021-09-27 18:17:24 +10:00
Justin Bedo
1af3c32897
rPackages.sodium: fix build
2021-09-27 18:17:19 +10:00
Justin Bedo
e1c796341a
rPackages.bio3d: fix build
2021-09-27 18:17:12 +10:00
Justin Bedo
ff6652c17c
rPackages.vcfR: fix build
2021-09-27 18:17:07 +10:00
Justin Bedo
d17b097899
rPackages.ggbio: fix build
2021-09-27 18:17:00 +10:00
Justin Bedo
fcd7af4a53
rPackages.qpdf: fix build
2021-09-27 18:16:54 +10:00
Justin Bedo
6df27f3109
rPackages.writexl: add zlib dependency
2021-09-27 18:16:48 +10:00
Justin Bedo
353fea8792
rPackages.bbl: add missing gsl dependency
2021-09-27 18:16:39 +10:00
Justin Bedo
3f72620275
rPackages.ArrayExpressHTS: add missing buildInputs
2021-09-27 18:16:32 +10:00
Justin Bedo
85f963caca
rPackages.s2: add missing buildInput
2021-09-27 18:16:25 +10:00
Justin Bedő
6f333e8723
Merge pull request #136964 from jbedo/rPackages-RclusTool
...
rPackages.RclusTool: add to packges requiring X
2021-09-25 22:33:42 +10:00
Justin Bedő
29595eba18
Merge pull request #127790 from PhDyellow/r_bioc_updater_revised
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r-modules: R bioc updater revised
2021-09-16 09:36:18 +00:00
Phil Dyer
96eb04ef7a
rPackages: improve formatting in default.nix
2021-09-15 11:17:41 +10:00
Maciej Krüger
a286dc9ef2
rPackages.RMySQL: fix package
2021-09-13 13:50:35 +02:00
Justin Bedo
006c32f161
rPackages.RclusTool: add to packges requiring X
2021-09-07 16:34:43 +10:00
Justin Bedo
6af74c9ff8
rPackages.ssh: include missing libssh buildInput
2021-09-07 11:32:15 +10:00
Phil Dyer
174c5e166e
r-modules: revert changes to lwgeom
2021-08-24 21:16:51 +10:00
Phil Dyer
d7ac07cdbb
r-modules: fix r package build failures
...
r-modules: fix r package system dependencies
r-modules: fix terra package dependencies
r-modules: fix edge case for R package import
The R package "import" has a name that clashes
with the nix function "import". The package
name in nixpkgs is correctly modified to
avoid the clash, but the name of the
R package was also being changed in
cran-packages.nix, which broke downloading
of the package.
cran-packages.nix has been manually patched,
and genreate-r-packages.R has been fixed so
future automatic updates will succeed.
r-modules: fix repeated `pkgs.` and svglite
2021-08-24 09:11:14 +10:00
Josh Moller-Mara
f787c0b130
rPackages.rsvg: fix build
...
rsvg needs pkg-config and development headers from librsvg to build
2021-08-17 22:59:19 -07:00
Artturi
1f8e01479b
Merge pull request #125556 from ivan-tkatchev/rhdf5
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rhdf5: fix build (#125101 )
2021-08-07 02:29:52 +03:00
