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5758 Commits

Author SHA1 Message Date
Philipp Middendorf
d2608d29a2 black: 18.6b4 -> 18.9b0 (#47914) 2018-10-06 15:19:38 +02:00
Jörg Thalheim
a363ed1071
Merge pull request #47832 from veprbl/pr/arrow_0.10.0 
arrow-cpp: 0.9.0 -> 0.10.0
 2018-10-04 23:34:17 +01:00
Philipp Middendorf
98238e58c8 yapf: 0.22.0 -> 0.24.0 2018-10-04 10:34:55 +02:00
Dmitry Kalinkin
3942226053 arrow-cpp: 0.9.0 -> 0.10.0 
pythonPackages.pyarrow: 0.9.0 -> 0.10.0
parquet: 1.4.0 -> 1.5.0
 2018-10-03 21:43:48 -04:00
Frederik Rietdijk
4d1abc4419
Merge pull request #47604 from NixOS/staging-next 
Staging next
 2018-10-02 18:22:18 +02:00
catern
9ac7893042 pythonPackages.trio: 0.6.0 -> 0.7.0 (#47638) 2018-10-02 12:52:58 +02:00
Roman Volosatovs
2ada8f78d0 simple-websocket-server: Init at 20180414 (#47567) 2018-10-02 00:40:10 +02:00
Paul TREHIOU
483e2a1a6b btchip: init at 0.1.28 
electrum and electron-cash: add support for btchip library (#40816)
 2018-10-01 18:13:03 -04:00
Lancelot SIX
5aa66991a6 pythonPackages.django-raster: Improve django version support (#47484) 2018-10-01 22:02:11 +02:00
Daiderd Jordan
1383c08f2c
Merge branch 'master' into staging-next 2018-10-01 19:42:07 +02:00
Josef Kemetmüller
49dcf7be62 pythonPackages.py-cpuinfo: Fix darwin build (#47558) 2018-09-30 21:19:05 +02:00
volth
0a784c094f libvirt: 4.5.0 -> 4.7.0 (#46502) 2018-09-29 22:33:38 +02:00
Florian Klink
2be514d5c3 pythonPackages.pystemd: init at 0.5.0 (#47517) 2018-09-29 21:25:08 +02:00
Michael Weiss
2df4b3e6eb pythonPackages.glances: Enable the tests (skip the failing ones) 2018-09-29 20:47:05 +02:00
Matthew Bauer
228d6f5068
Merge pull request #46007 from markuskowa/openmpi-up 
openmpi: 3.1.0->3.1.2
 2018-09-29 13:24:46 -05:00
Michael Weiss
a108b8617b pythonPackages.glances: 3.0.1 -> 3.0.2 2018-09-29 11:38:12 +02:00
Lancelot SIX
a006e2fd7c pythonPackages.django_2_1: 2.1 -> 2.1.1 (#47481) 
See https://docs.djangoproject.com/en/2.1/releases/2.1.1/ for release
notes
 2018-09-28 20:13:29 +02:00
Lancelot SIX
eabaf4e30a
Merge pull request #47460 from Gerschtli/add/flask-jwt-extended 
pythonPackages.flask-jwt-extended: init at 3.13.1
 2018-09-28 16:19:05 +02:00
Tobias Happ
f14d4ba112 pythonPackages.flask_sqlalchemy: 2.1 -> 2.3.2 2018-09-28 11:55:36 +02:00
Tobias Happ
50636fda52 pythonPackages.flask-jwt-extended: init at 3.13.1 2018-09-28 11:54:06 +02:00
Samuel Leathers
2d15180ea2
Merge pull request #47420 from va1entin/pynacl-130 
pythonPackages.pynacl: 1.2.1 -> 1.3.0
 2018-09-27 13:42:34 -04:00
Valentin Heidelberger
d0199179ba pythonPackages.pynacl: 1.2.1 -> 1.3.0 2018-09-27 13:26:26 +02:00
Markus Kowalewski
676825f6fe
mpi4py: Add patch to skip broken tests. 
Fixes compilation with openmpi-3.1.2
 2018-09-26 23:39:18 +02:00
Markus Kowalewski
be02ab2f30
openmpi: 3.1.0 -> 3.1.2 2018-09-26 23:38:55 +02:00
aszlig
65d0b082f3
Merge Paperwork update to version 1.2.4 (#46487) 
Thanks to @symphorien for this work, which apart from the update itself
includes a few more fixes and cleanups.

I've tested building and running the upgraded Paperwork and while I
haven't done extensive testing on every little feature it seems to work
so far.

The changes also include an addition to fetchFromGitLab, which allows to
specify a group.

Merges: #46487
 2018-09-25 23:13:08 +02:00
Igor Tarasov
292bb74552 python.pkgs.grpcio: 1.14.1 -> 1.15.0 2018-09-25 19:06:07 +00:00
John Ericson
8cbf56058a
Merge pull request #47355 from obsidiansystems/numpy-fortran 
numpy, scipy: Fix some nativeBuildInputs
 2018-09-25 14:45:40 -04:00
Dylan Simon
c77e8096ee python.pkgs.cheroot: fix setup patch URL (#47320) (#47354) 
Fix to specific patch revision rather than latest
 2018-09-25 20:20:57 +02:00
John Ericson
c701d6cb21 Merge remote-tracking branch 'upstream/master' into staging 2018-09-25 14:20:27 -04:00
John Ericson
84fc814982 scipy: gfortran should be in nativeBuildInputs 2018-09-25 14:08:41 -04:00
John Ericson
cfbfb9440c numpy: gfortran and pytest should be nativeBuildInputs 2018-09-25 14:03:30 -04:00
Jörg Thalheim
725b57ba11
Merge pull request #47283 from flokli/elasticsearch-dsl-6.2.1 
pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1
 2018-09-24 20:40:21 +01:00
Vladimír Čunát
3a09a4b579
Merge branch 'master' into staging 
Hydra: ?compare=1480463
 2018-09-24 21:18:23 +02:00
Florian Klink
18c7fbd78d pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1 2018-09-24 21:08:31 +02:00
Edward Tjörnhammar
491a580716
pythonPackages.sharedmem: init at 0.3.5 2018-09-24 17:00:55 +02:00
Jörg Thalheim
db05dd8b6d
Merge pull request #47268 from Ma27/fix-py3exiv2 
python3Packages.py3exiv2: fix build
 2018-09-24 13:52:43 +01:00
Maximilian Bosch
50f23da8e6
python3Packages.py3exiv2: fix build 
Recent boost versions name their `python3` shared objects
`boost_python3x` rather than `boost_python3`.

See https://hydra.nixos.org/build/80712295
Addresses #45960
 2018-09-24 14:32:50 +02:00
Jörg Thalheim
3e270ff919
Merge pull request #46668 from mbode/doitlive_4 
doitlive: 3.0.3 -> 4.0.1
 2018-09-24 13:26:27 +01:00
Maximilian Bosch
fbeb94dd46
Revert "python: ldappool: 2.2.0 -> 2.3.0" 
This reverts commit 29acc8339f.
 2018-09-24 13:35:05 +02:00
Dmitry Kalinkin
cd1b9d93e6 pyjet: init at 1.3.0 (#47243) 2018-09-23 22:40:29 +02:00
Maximilian Bosch
5ad7aedf63 pythonPackages.pyftgl: fix build (#47232) 
See https://hydra.nixos.org/build/80705583

Recent `boost` versions with `python` enabled have changed their naming
scheme for `boost_python` shared objects which causes issues with the
proper linking when building `pyftgl`.

Previously the library was named `boost_python3`, no it's named
`boost_python36` for current python (3.6.x).

The same issue applies for the `python2`.

Addresses #45960
 2018-09-23 22:39:21 +02:00
Andrew Dunham
e141f7cd2f pythonPackages.flask_assets: fix tests (#47203) 2018-09-23 10:02:51 +02:00
Dmitry Vyal
f7f8b60ace pytorch-0.4 rpath fix, some tests reenabled 2018-09-23 09:36:32 +02:00
Frederik Rietdijk
14673d61ed Merge master into staging 2018-09-23 09:33:09 +02:00
Frederik Rietdijk
56853dc6d8
Merge pull request #45941 from NixOS/staging-next 
Staging next
 2018-09-23 09:31:28 +02:00
Frederik Rietdijk
343ac4d2fc
Merge pull request #42619 from nyanloutre/pythonPackages.block-io 
pythonPackages.block-io: init at 1.1.8
 2018-09-23 09:27:51 +02:00
Maximilian Bode
ff2dddac7d pythonPackages.click-completion: init at 0.4.1 2018-09-22 09:52:49 +02:00
Maximilian Bode
af7adc206d pythonPackages.shellingham: init at 1.2.6 2018-09-22 09:52:48 +02:00
Maximilian Bode
be1f39244f pythonPackages.click-didyoumean: init at 0.0.3 2018-09-22 09:52:48 +02:00
Orivej Desh
e78cf6ecba python.pkgs.pysam: 0.13.0 -> 0.15.1 2018-09-21 22:48:56 +00:00
Tobias Happ
d7b8f68c05 pythonPackages.dependency-injector: 3.13.1 -> 3.13.2 (#47139) 2018-09-21 20:08:02 +02:00
Matthew Bauer
92158a4b2c
Merge pull request #45776 from bkchr/gst_1_14_2 
Gstreamer: 1.14.0 -> 1.14.2
 2018-09-20 18:02:58 -05:00
xeji
9c02914b42
pythonPackages.circus: fix build, add meta (#47066) 2018-09-21 00:18:13 +02:00
xeji
f3a0c8a3aa
pythonPackages.nilearn: disable still failing tests (#46918) 
A previous attempt to fix tests failing on some machines (#46850)
was unsuccessful, they still failed on Hydra sometimes while
succeeding locally. Revert #46850 and disable these tests instead.
 2018-09-19 23:50:22 +02:00
Assassinkin
aaa3e3f0b4 pythonPackages.osmnx: init at 0.8.2 2018-09-19 16:14:37 +01:00
xeji
970393c34a
pythonPackages.nilearn: fix test_signal tests (#46850) 
These tests failed on some machines, probably due to lower arithmetic
presicion. Reduce required precision from 13 to 8 decimal digits.
 2018-09-19 16:15:02 +02:00
Jörg Thalheim
b224eef108 python3.pkgs.typeguard: fix builds by applying utf-8 locales 
ZHF #45960
 2018-09-19 15:11:31 +01:00
Benjamin Hipple
426c2856d7 pythonPackages.python-binance: init at 0.7.0 
Library for communicating with the Binance REST API.
 2018-09-18 21:44:27 -04:00
John Ericson
7319013ea1 Merge remote-tracking branch 'upstream/master' into staging 2018-09-18 16:55:42 -04:00
Frederik Rietdijk
3126be4308
Merge pull request #46627 from costrouc/costrouc/dask-extensions 
pythonPackages.dask-*: init
 2018-09-18 19:24:49 +02:00
Assassinkin
de9fb389f4 pythonPackages.fuse: 0.2.1 -> 0.3.1 | refactor | python3 support 2018-09-18 19:05:34 +02:00
Roger Qiu
31554915a4 pythonPackages.bjoern: init at 2.2.2 2018-09-18 18:51:51 +02:00
Jörg Thalheim
ad11711387
Merge pull request #46829 from adamtulinius/patch-3 
pythonPackages.gmpy: update homepage
 2018-09-18 13:55:02 +01:00
Adam Finn Tulinius
c7e35b256c
pythonPackages.gmpy2: update homepage 2018-09-18 14:29:48 +02:00
Adam Finn Tulinius
74d1f4c20b
pythonPackages.gmpy: update homepage 2018-09-18 14:25:28 +02:00
Vladyslav Mykhailichenko
336a913f42 pythonPackages.pgspecial: 1.8.0 -> 1.11.2 2018-09-18 14:00:59 +03:00
Jörg Thalheim
7d39e99a1e
Merge pull request #46316 from erosennin/psycopg-2.7.5 
pythonPackages.psycopg2: 2.7.1 -> 2.7.5
 2018-09-18 11:33:06 +01:00
Jörg Thalheim
080b3ef0b5 python2.pkgs.mypy_extensions: also enable python2 2018-09-18 08:05:02 +01:00
Jörg Thalheim
bab28c26f1
Merge pull request #46788 from teto/mypy630 
python3Packages.mypy: 0.620 -> 0.630
 2018-09-18 08:01:53 +01:00
Maximilian Bosch
5f2eacccf6 pythonPackages.mahotas: skip test_moments.test_normalize and test_texture.test_haralick3d testcase (#46793) 
As stated in #46368, this package seems to have issues with impure tests
(reported in https://github.com/luispedro/mahotas/issues/97).

Unfortunately the `release-18.09` job on Hydra fails at the attempt to
build this package since `test_moments.test_normalize1` and
`test_texture.test_haralick3d` breaks. Until
the root cause is identified, we skip the disabled tests to ensure that
the resulting package is not entirely broken (which can't be confirmed
with `doCheck = false`).

See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python27Packages.mahotas.x86_64-linux
See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python36Packages.mahotas.x86_64-linux
See https://logs.nix.ci/?key=nixos/nixpkgs.46793&attempt_id=b85a638d-dcb0-41d3-ab2a-9616a3bb0175

/cc @xeji @luispedro
 2018-09-17 21:33:47 +02:00
Matthieu Coudron
676ceb81b7 python3Packages.mypy: 0.620 -> 0.630 
Now requires mypy_extensions so added it as well.
 2018-09-18 00:31:41 +09:00
Uli Baum
a66c00d780 pythonPackages.dendropy: fix build 
Build failed after update to 4.4.0 because the tests are incorrectly
packages in the pypi version.
Switch to upstream github repo, fix tests, disable failing test cases
 2018-09-16 17:37:28 +02:00
Jörg Thalheim
f03e9545eb
Merge pull request #46732 from worldofpeace/asyncssh/1.14.0 
python.pkgs.asyncssh: 1.13.3 -> 1.14.0
 2018-09-16 11:22:16 +01:00
worldofpeace
710b3d678b python.pkgs.asyncssh: 1.13.3 -> 1.14.0 2018-09-16 04:48:14 -04:00
Vincent Laporte
5b8b9a08e7
pythonPackages.libnacl: fix build on darwin 2018-09-16 06:24:49 +00:00
xeji
13c500ae16
pythonPackages.pyodbc: fix build (#46703) 
Build with unixODBC instead of libiodbc, see discussion in
https://github.com/mkleehammer/pyodbc/issues/444
 2018-09-15 23:13:51 +02:00
Maximilian Bode
2438ceb5b4 salt: fix darwin build by specifying dependency on tornado 4 
/cc ZHF #45961
 2018-09-15 10:09:36 +02:00
Symphorien Gibol
46cd67e6a1 pythonPackages.{pyocr,pypillowfight}: fix homepage 2018-09-14 14:32:32 +02:00
Symphorien Gibol
cd599c8fa6 pythonPackages.pypillowfight: 0.2 -> 0.2.4 2018-09-14 14:32:32 +02:00
Symphorien Gibol
5314a74ee6 pythonPackages.pyocr: 0.4.7 -> 0.5.3 2018-09-14 14:32:31 +02:00
xeji
f1f8ce80c4
Merge pull request #46608 from xeji/p/python-fixes-2 
pythonPackages: fix some broken builds
 2018-09-14 10:56:59 +02:00
Chris Ostrouchov
bd6873774e
pythonPackages.dask-xgboost: init at 0.1.5 2018-09-13 16:42:25 -04:00
Chris Ostrouchov
72bd196b89
pythonPackages.dask-image: init at 0.1.1 2018-09-13 16:41:58 -04:00
Chris Ostrouchov
ce4b7154ac
pythonPackages.slicerator: init at 0.9.8 2018-09-13 16:41:34 -04:00
Chris Ostrouchov
1a67a15c6f
pythonPackages.pims: init at 0.4.1 2018-09-13 16:41:13 -04:00
Chris Ostrouchov
41cd200b64
pythonPackages.dask-jobqueue: init at 0.4.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
32cb956fea
pythonPackages.dask-glm: init at 0.1.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
93cdaaa3d4
pythonPackages.dask-ml: init at 0.10.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
e5cd420e73
pythonPackages.distributed: refactor move to fetchPypi 
There is a bug when using git repo in that the package does not get a
version (shows up as `0+unknown`). Using pypi fixes this issue allows
allows for auto upgrades.
 2018-09-13 15:10:40 -04:00
Uli Baum
d9bdd64f04 pythonPackages.nilearn: fix tests 
disable failing tests
 2018-09-13 19:40:29 +02:00
Uli Baum
be12bb81aa pythonPackages.wordfreq: 2.0 -> 2.2.0, fix build 
Previous version didn't build (test failure).
Update to latest, tests use pytest now, disable failing tests.
 2018-09-13 18:16:34 +02:00
Uli Baum
0bda601ee5 pythonPackages.pytest-rerunfailures: fix build 
some tests fail since pytest 3.7.2 -> 3.7.4 update, disable them
 2018-09-13 17:48:38 +02:00
Uli Baum
781eaa1377 pythonPackages.flask-pymongo: fix build 
add missing dependency: vcversioner
 2018-09-13 17:25:38 +02:00
Uli Baum
9e4b0b795c pythonPackages.eve: fix build, drop incorrect dependencies 
Build failed because of dependency Flask-PyMongo, which actually
isn't a dependency of eve as they have their own flask_pymongo code.

- Drop incorrect dependency flask-pymongo
- Drop redunant dependencies already propageted by flask:
  itsdangerous, werkzeug, jinja2
- Drop dependency markupsafe, not required any more
 2018-09-13 17:09:51 +02:00
Uli Baum
abe97e9446 pythonPackages.daphne: 2.1.0 -> 2.2.2 
Update, re-enable all tests on linux, disable tests on darwin.
This fixes the build of pythonPackages.channels
 2018-09-13 16:45:27 +02:00
Uli Baum
b54677969b pythonPackages.zodb: fix tests 
Tests failed after `persistent` was updated to 4.4.
Apply an upstream patch to fix them.
 2018-09-13 13:35:34 +02:00
xeji
2bc08ce0f5
Merge pull request #46488 from xeji/p/python-fixes 
pythonPackages.{pydub,readme_renderer,pyfakefs,us,restview}: fix build
 2018-09-13 11:38:20 +02:00
Uli Baum
6dc57134da pythonPackages.restview: fix tests 
Failed after readme_renderer was updated. Apply an upstream patch.
 2018-09-13 11:21:19 +02:00
xeji
68b7de9e2e
pythonPackages.BTrees: fix build (#46588) 
a test case failed since the update to 4.5.1, disable it
 2018-09-13 02:32:37 +02:00
xeji
decd819911
Merge pull request #46556 from rnhmjoj/lastpass 
qutebrowser: patch all python scripts
 2018-09-12 23:51:40 +02:00
Robert Schütz
c15a94b6d1
Merge pull request #45644 from jluttine/update-rlp-1.0.2 
pythonPackages.rlp: 1.0.1 -> 1.0.2 (with some new deps)
 2018-09-12 12:55:29 +02:00
Jörg Thalheim
63668d33b2 python-language-server: 0.19.0 -> 0.21.2 2018-09-12 09:03:08 +01:00
Jörg Thalheim
e4393102e6 python-jsonrpc-server: init at 0.0.1 2018-09-12 09:03:08 +01:00
Jörg Thalheim
8d4afa5f2e
pythonPackage.backports-shutil-which: enable tests 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
d0ce8834ae
pythonPackages.libagent: fix propagatedBuildInputs 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
80b64a2e04
pythonPackage.backports-shutil-which: init at 3.5.1 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
c9bf7f67b9
pythonPackage.pymsgbox: init at 1.0.6 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
5c9db2f02f
pythonPackages.ledgerblue: fix build inputs 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
38e86a8f1e
pythonPackages.python-u2flib-host: init at 3.0.3 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
f053daf36c
pythonPackages.rlp: fix build 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
9f8e6148c5
pythonPackages.eth-utils: init at 1.2.0 2018-09-12 08:44:18 +03:00
Jaakko Luttinen
541a13ca0a
pythonPackages.eth-typing: init at 1.1.0 2018-09-12 08:44:18 +03:00
rnhmjoj
d117e3ccd8
python.pkgs.construct: 2.8.16 -> 2.9.45 2018-09-12 03:35:26 +02:00
rnhmjoj
dca577a36c
python.pkgs.pykeepass: init at 3.0.2 2018-09-12 03:35:25 +02:00
rnhmjoj
75b2058aff
python.pkgs.pyreadability: init at 0.4.0 2018-09-12 03:23:04 +02:00
rnhmjoj
e281f0e686
python.pkgs.tldextract: init at 2.2.0 2018-09-12 03:23:04 +02:00
rnhmjoj
99dad9d7f0
python.pkgs.requests-file: init at 1.4.3 2018-09-12 03:23:04 +02:00
Maximilian Bosch
a25dcb6607 python3Packages.pyowm: fix python3 build (#46549) 
See https://hydra.nixos.org/build/80714323

Version 2.9 requires `geojson==2.x'. To allow 2.4, the constraint
required some patching using `substituteInPlace'.

Addresses #45960
 2018-09-12 01:23:36 +02:00
Ryan Mulligan
8d4248a4cb
Merge pull request #44657 from costrouc/costrouc/dask-distributed 
pythonPackages.distributed: 1.15.1 -> 1.22.1
 2018-09-11 16:05:58 -07:00
Chris Ostrouchov
027b9beb58 fixup! merge: fixing changes with nixpkgs since pull-request 2018-09-11 17:14:12 -04:00
Christopher Ostrouchov
dac171dd5d
merge: fixing changes with nixpkgs since pull-request 
- pytest-timeout: no longer requires patch
 - joblib: was improperly merged with the github merge tool (never
   using again)
 2018-09-11 14:24:59 -04:00
Jaakko Luttinen
c44504410b
pythonPackages.eth-hash: init at 0.1.14 2018-09-11 17:49:48 +03:00
nyanloutre
71a8aafbb8 pythonPackages.block-io: init at 1.1.8 2018-09-11 15:16:51 +02:00
nyanloutre
3ffca639a4 pythonPackages.base58: init at 1.0.0 2018-09-11 15:16:51 +02:00
xeji
f201f8c3fd
pythonPackages.pytestflakes: fix build (#46500) 
- disable a failing test case that looks broken
- remove pytestcache depencency that was dropped upstream
 2018-09-11 11:15:03 +02:00
Uli Baum
bd02a1931a pythonPackages.pyfakefs: fix darwin build 
One test failed on darwin due to case-insensitive file system,
disable it.
 2018-09-10 22:42:23 +02:00
Uli Baum
bc036397a3 pythonPackages.pydub: fix aarch64 build 
one test failed due to rounding errors, disable it
 2018-09-10 22:36:14 +02:00
Uli Baum
40c469e56b pythonPackages.pydub: remove obsolete patch 2018-09-10 18:19:01 +02:00
Uli Baum
80ecef8e4b pythonPackages.pydub: fix build and tests 
- remove obsolete patch that caused build failure
- no tests were run because required data files were missing in pypi
  version; use github version instead
 2018-09-10 18:05:40 +02:00
Uli Baum
d2a885a3b5 pythonPackages.pyfakefs: 3.4.1 -> 3.4.3, fix build 
Update and disable some failing test cases
 2018-09-10 17:43:18 +02:00
Uli Baum
bb1f3422e0 pythonPackages.readme_renderer: fix build 
Disable one test case that has failed since last bleach update.
 2018-09-10 17:19:05 +02:00
Uli Baum
a7166cdc35 pythonPackages.us: fix build 
Required jellyfish==0.5.6 but we have 0.6.1. Loosen requirements.
 2018-09-10 17:06:54 +02:00
Timo Kaufmann
2b6144d1ad
Merge pull request #46368 from Ma27/fix-mahotas 
pythonPackages.mahotas: fix build, move expression
 2018-09-10 11:56:50 +02:00
Maximilian Bosch
ee897b64ff
pythonPackages.mahotas: fix build, move expression 
See https://hydra.nixos.org/build/80828287

Moves `mahotas` out of `python-packages.nix` into its own file and fixes
broken test cases by skipping them using nosetest's `@nottest`
annotation.

These tests broke from time to time in a sandbox and are therefore
considered impure.

Addresses #45960
 2018-09-10 11:32:58 +02:00
Josef Kemetmüller
6f891ff66e pythonPackages.joblib: Disable flaky test (#46439) 
The test `test_nested_parallelism_limit` fails on darwin.
 2018-09-09 22:42:17 +02:00
Josef Kemetmüller
5e0c468737 pythonPackages.fiona: Fix darwin build (#46435) 2018-09-09 22:40:49 +02:00
xeji
12fae6e5c7
Merge pull request #46440 from knedlsepp/fix-pythonPackages.libusb1 
pythonPackages.libusb1: Fix darwin build
 2018-09-09 22:25:06 +02:00
Josef Kemetmüller
b633fc4fb4 pythonPackages.libusb1: Disable flaky test 2018-09-09 22:09:34 +02:00
xeji
d18aaceda6
Merge pull request #46438 from knedlsepp/fix-pythonPackages.flask_ldap_login 
pythonPackages.flask_ldap_login: Fix build
 2018-09-09 22:00:59 +02:00
Josef Kemetmüller
b667a76eac pythonPackages.flask_ldap_login: Disable on python3 2018-09-09 21:48:54 +02:00
Josef Kemetmüller
a4b040e69f pythonPackages.cozy: Disable on python2 (#46436) 
Cozy does not support python2.
 2018-09-09 21:33:45 +02:00
Josef Kemetmüller
063aa389df pythonPackages.libusb1: Fix darwin build 2018-09-09 20:56:34 +02:00
Josef Kemetmüller
25f8753bf4 pythonPackages.flask_ldap_login: 0.3.0 -> 0.3.4 2018-09-09 20:39:46 +02:00
Josef Kemetmüller
d4e89680d2 pythonPackages.flask_ldap_login: Fix build 2018-09-09 20:39:15 +02:00
Jörg Thalheim
201ee19758
Merge pull request #46377 from dasJ/nonhttp 
treewide: Use http/https for homepages
 2018-09-09 15:50:25 +01:00
xeji
17c51ef436
Merge pull request #45925 from markuskowa/ompi-up 
slurm: 17.11.9-2 -> 18.08.0-1
 2018-09-09 14:20:00 +02:00
Maximilian Bode
c020a59ccd pythonPackages.tifffile: fix python 2 build (#46415) 2018-09-09 12:13:36 +02:00
Maximilian Bode
dfcf07d9d3 pythonPackages.django-raster: fix build (#46413) 2018-09-09 11:34:18 +02:00
Jan Malakhovski
b7bd0561be Merge branch 'master' into staging 2018-09-08 22:08:32 +00:00
Markus Kowalewski
7dd2f4ec9c
pyslurm: 20180811 -> 20180908 2018-09-08 23:16:37 +02:00
xeji
113f4d7b44
pythonPackages.persistent: fix build (#46364) 
Documentation-related tests failed, the docs didn't build correctly
because of missing dependencies sphinx and manuel. Add them.
 2018-09-08 21:35:33 +02:00
Maximilian Bode
73e75a7d16 pythonPackages.confluent-kafka: fix build (#46380) 
cc #45960
 2018-09-08 21:32:04 +02:00
Janne Heß
9ef77854f7 treewide: Use http/https for homepages 2018-09-08 18:30:00 +02:00
Maximilian Bosch
a02002deba pythonPackages.pycaption: fix build (#46356) 
The `beaitufulsoup4` package distributed by `nixpkgs` is now at `4.6.3`.

Additionally it fixes `gnomecaption` which depends on the broken
`pycaption` package.

See https://hydra.nixos.org/build/81000247
See https://hydra.nixos.org/build/80723223

Addresses #45960
 2018-09-08 11:20:47 +02:00
Maximilian Bosch
218ac50fd4 pythonPackages.trio: fix build (#46342) 
Fixes the build for `python3Packages.trio' for the next ZHF iteration.
Please refer to the Hydra build for further reference: https://hydra.nixos.org/build/80617356

`python3Packages.sniffio` is needed for the build, otherwise the build
aborts with an error like this:

```
  Could not find a version that satisfies the requirement sniffio (from trio==0.6.0) (from versions: )
No matching distribution found for sniffio (from trio==0.6.0)
```

See #45960
 2018-09-08 01:02:55 +02:00
Alexey Shmalko
e5e4fd8ede
Merge pull request #46327 from costrouc/costrouc/markerlib 
pythonPackages.markerlib: init at 0.6.0
 2018-09-07 23:38:16 +03:00
Chris Ostrouchov
2895560f4f
pythonPackages.markerlib: init at 0.6.0 2018-09-07 14:08:35 -04:00
xeji
6f3ff5acc7
Merge pull request #46186 from costrouc/costrouc/python-ncclient 
pythonPackages.ncclient: refactor + init pythonPackages.selectors2
 2018-09-07 17:33:58 +02:00
Chris Ostrouchov
a726956b42
pythonPackages.ncclient: refactor 
adding selectors2 as dependency of ncclient. Added recently 20 days
ago in August. 8ef20f2828
 2018-09-07 10:22:22 -04:00
Chris Ostrouchov
11c3fe2258
pythonPackages.selectors2: init at 2.0.1 
Added package becuase now dependency of ncclient.
 2018-09-07 10:22:22 -04:00
Andrey Golovizin
2bec98ae06 pythonPackages.psycopg2: 2.7.1 -> 2.7.5 2018-09-07 15:40:34 +02:00
Daniël de Kok
d261df5fc1 python2Packages.spacy_models: update all models to version 2.0.0 (#46182) 
Update the model list to those models that are compatibly with the
latest spaCy version:

https://github.com/explosion/spacy-models/blob/master/compatibility.json

The updated model file evaluates to the following packages:

python2Packages.spacy_models.de_core_news_sm
python2Packages.spacy_models.en_core_web_lg
python2Packages.spacy_models.en_core_web_md
python2Packages.spacy_models.en_core_web_sm
python2Packages.spacy_models.en_vectors_web_lg
python2Packages.spacy_models.es_core_news_md
python2Packages.spacy_models.es_core_news_sm
python2Packages.spacy_models.fr_core_news_md
python2Packages.spacy_models.fr_core_news_sm
python2Packages.spacy_models.it_core_news_sm
python2Packages.spacy_models.nl_core_news_sm
python2Packages.spacy_models.pt_core_news_sm
python2Packages.spacy_models.xx_ent_wiki_sm
python3Packages.spacy_models.de_core_news_sm
python3Packages.spacy_models.en_core_web_lg
python3Packages.spacy_models.en_core_web_md
python3Packages.spacy_models.en_core_web_sm
python3Packages.spacy_models.en_vectors_web_lg
python3Packages.spacy_models.es_core_news_md
python3Packages.spacy_models.es_core_news_sm
python3Packages.spacy_models.fr_core_news_md
python3Packages.spacy_models.fr_core_news_sm
python3Packages.spacy_models.it_core_news_sm
python3Packages.spacy_models.nl_core_news_sm
python3Packages.spacy_models.pt_core_news_sm
python3Packages.spacy_models.xx_ent_wiki_sm
 2018-09-07 12:58:53 +02:00
Christopher Ostrouchov
66e1288962 pythonPackages.kubernetes: add missing dependency (#46179) 
fix build issue from missing dependency `adal`. This is due to `adal`
being added as a dependency in July
23rd. 9afec55f4a (diff-b4ef698db8ca845e5845c4618278f29a)
 2018-09-07 11:25:53 +02:00
Christopher Ostrouchov
427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June c0b9308988.
 2018-09-07 09:26:07 +02:00
Christopher Ostrouchov
6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov
b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov
b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
Christopher Ostrouchov
7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
Chris Ostrouchov
1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Matthieu Coudron
13050ccc0b python3Packages.genanki: init at 0.6.0 
Library to generate anki flashcards.
 2018-09-06 18:31:57 +02:00
Jörg Thalheim
89571b255e
Merge pull request #45996 from teto/alot_completion 
[rdy] pythonPackages.alot: install zsh completion
 2018-09-06 11:28:09 +01:00
qolii
9f0efc084c pyopenssl: Disable some tests, for libressl support. (#46072) 2018-09-06 11:02:48 +01:00
Jörg Thalheim
9a585658e2
Merge pull request #46132 from costrouc/costrouc/pymatgen-networkx-dependency 
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1
 2018-09-06 09:55:18 +01:00
Sarah Brofeldt
a59f244b2c
Merge pull request #46126 from flokli/gmpy-phe 
pythonPackages: cleanup gmpy[2], add phe
 2018-09-06 10:31:56 +02:00
Sarah Brofeldt
574f893507
Merge pull request #46124 from erosennin/pymetar-1.0 
pythonPackages.pymetar: 0.21 -> 1.0
 2018-09-06 10:26:32 +02:00
Jörg Thalheim
df2cc4121b
Merge pull request #46125 from ashgillman/nipype-futures-py2-only 
python.pkgs.nipype: Futures is python 2 only. Also fix building.
 2018-09-06 08:25:33 +01:00
Chris Ostrouchov
63cf879d6c
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Christopher Ostrouchov
ed130935c8
Merge branch 'master' into costrouc/dask-distributed 2018-09-05 23:53:23 -04:00
Chris Ostrouchov
4f70170f8a
pythonPackages.distributed: 1.15.1 -> 1.22.1 
The github repository was downloaded instead of the pypi repository
for testing (needed `conftest.py`). Major work was done on the
underlying dependencies to make distributed work on python 2.7,
3+. Note that the test **do** take a significant amount of time (10-15
minutes).

 - moved to `python-modules`
 - compatible with 2.7, 3+
 - all tests pass (previously tests were not run)
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
7b920172db
pythonPackages.pytest-repeat: init at 0.6.0 
- compatible with 2.7, 3+
 - all tests pass and running
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
05890dda3d
pythonPackages.joblib: 0.12.1 -> 0.12.2 
In order to get all the tests passing the Github repository was
downloaded instead of from pypi so that the `conftest.py` is
available.

In addition to updating the version:

  - compatible with 2.7, 3+ now
  - all tests are running and passing
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
3a56e314b8
pythonPackages.python-lz4: init at 2.1.0 
Fetching from github repository instead of pypi so that all tests can
be run.

 - compatible with 2.7, 3+
 - all tests pass
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
5704642a3f
pythonPackages.pytest-faulthandler: init at 1.5.0 
- compatible with 2.7 and 3+
 - all test pass.
 2018-09-05 23:46:28 -04:00
Florian Klink
e053386c92 gmpy2: 2.0.6 -> 2.0.8 
Also move outside python-packages.nix
 2018-09-05 23:56:20 +02:00
Florian Klink
7339a4004c gmpy: move outside python-packages.nix 2018-09-05 23:56:20 +02:00
Florian Klink
f051f66c9a phe: init at 1.4.0 2018-09-05 23:56:20 +02:00
Robert Schütz
041043420f python.pkgs.py3status: fix build 2018-09-05 23:28:31 +02:00
Ashley Gillman
12c0dd5432 python.pkgs.nipype: Futures is python 2 only. Also fix building. 2018-09-05 22:26:34 +01:00
Andrey Golovizin
7de5708e9e pythonPackages.pymetar: enable tests 2018-09-05 23:08:47 +02:00
Andrey Golovizin
ee841c57bf pythonPackages.pymetar: 0.21 -> 1.0 2018-09-05 22:32:57 +02:00
Andrey Golovizin
085cc29323 pythonPackages.pymetar: fix license 2018-09-05 22:32:49 +02:00
Jethro Kuan
a9a380b259 pythonPackages.tflearn: 0.2.1 -> 0.3.2 (#46102) 2018-09-05 17:38:23 +01:00
Daniël de Kok
348a153781 pythonPackages.thinc: fix darwin build (#46092) 
thinc uses Accelerate on macOS as a blas library. Add the necessary
dependencies to allow building on unsandboxed Darwin machines.
 2018-09-05 16:22:52 +02:00
Daniël de Kok
da8475736e spacy: relax dependency versions 2018-09-05 10:39:03 +02:00
Daniël de Kok
ffb094f939 thinc: relax dependency version requirements 2018-09-05 10:29:01 +02:00
Andreas Rammhold
d814c98ec8 python.pkgs.pytest-fixture-config: disable tests (#46021) 
Tests seem to fail on all recent versions even outside of our build
system. The upstream CI tests seem to somehow succeed but I wasn't able
to reproduce that locally. For not it is probably best to disable them.
 2018-09-05 01:02:06 +02:00
Frederik Rietdijk
b75ea627c6 pythonPackages.autobahn: run hooks 2018-09-04 19:18:13 +02:00
Frederik Rietdijk
20a4a4b593 pythonPackages.pytest.setupHook: run in correct phase 
It was reported that the 2nd solution wasn't working as expected because
it was ran in the wrong phase.

This commit creates a new phase, in between the installCheckPhase and distPhase.
 2018-09-04 19:18:13 +02:00
xeji
d22e22e2dd
Merge pull request #45987 from danieldk/fix-vowpalwabbit 
vowpalwabbit: fix build against boost-python.
 2018-09-04 08:54:00 +02:00
Daniël de Kok
69d418aeac vowpalwabbit: mark broken on aarch64. 2018-09-04 07:43:53 +02:00