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4077 Commits

Author SHA1 Message Date
Matt Huszagh
93e5e9e22d appcsxcad: init at unstable-2020-01-04 2020-08-10 23:45:59 -07:00
Matt Huszagh
dad6b637c2 qcsxcad: init at unstable-2020-01-04 2020-08-10 21:39:57 -07:00
Henry
eeea325e64 aliza: 1.48.10 -> 1.98.32 2020-08-10 11:16:16 +02:00
Ryan Mulligan
ea39525ae7
Merge pull request #94779 from r-ryantm/auto-update/marvin 
marvin: 20.15.0 -> 20.16.0
 2020-08-09 12:45:42 -07:00
Jonathan Ringer
23d6cd325f root: don't propagated python interpreter 2020-08-09 10:44:15 -07:00
Vincent Laporte
b8dfca143c coq_8_12: 8.12+β1 → 8.12.0 
coqPackages.equations: 1.2.2 → 1.2.3
 2020-08-08 06:33:08 +02:00
Markus Kowalewski
6c2f1e7f6b
octopus: 9.2 -> 10.0 2020-08-07 12:53:54 +02:00
Brandon Black
bceadafba3
fritzing: use Qt's mkDerivation (#89117) 2020-08-06 23:24:25 +02:00
Matt Huszagh
4390d9b9f1 hyp2mat: init at 0.0.17 2020-08-06 10:22:06 -07:00
R. RyanTM
4e6f70eaf8 marvin: 20.15.0 -> 20.16.0 2020-08-06 10:10:49 +00:00
Matt Huszagh
e74a6bcc20 csxcad: init at unstable-2020-02-08 2020-08-05 19:27:28 -07:00
volth
cf7b63df5b gcc.arch: refactor, move tables under lib/ 2020-08-05 11:18:26 +00:00
Daniël de Kok
d65ff81450
Merge pull request #93954 from danieldk/finalfusion-utils 
finalfusion-utils: init at 0.11.2
 2020-08-05 13:03:18 +02:00
Vincent Laporte
390769312d coq_8_5: fix build (use gnumake 4.2) 2020-08-03 07:46:20 +02:00
Ryan Mulligan
393d3338f9
Merge pull request #94545 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.23.1 -> 2.23.3
 2020-08-02 15:23:56 -07:00
R. RyanTM
44181da7b7 picard-tools: 2.23.1 -> 2.23.3 2020-08-02 10:04:36 +00:00
R. RyanTM
7fc1e676ea lean: 3.16.5 -> 3.18.4 2020-08-02 04:55:59 +00:00
Gabriel Ebner
aa37dc8aeb
Merge pull request #94389 from r-ryantm/auto-update/eprover 
eprover: 2.4 -> 2.5
 2020-08-01 11:12:37 +02:00
John Ericson
ef81828143
Merge pull request #94047 from kmicklas/fix-gplates 
gplates: 2.0.0 -> 2.2.0, unbreak
 2020-07-31 19:57:01 -04:00
R. RyanTM
202ce2d867 eprover: 2.4 -> 2.5 2020-07-31 23:35:12 +00:00
Yurii Rashkovskii
cc8369c461 why3: 1.2.1 -> 1.3.1 
Important: keeping why3 at 1.2.1 precludes framac 21.+ from having WP
plugin enabled, which is arguably a very important plugin.
 2020-07-30 23:05:08 +02:00
Herman Fries
956d35b990 openhantek6022: init at 3.1.1 2020-07-29 22:04:07 +02:00
Dmitry Kudriavtsev
345949594f maintainers: update name to anna 2020-07-28 19:48:16 -07:00
Mario Rodas
703b8ef3f3
Merge pull request #94091 from r-ryantm/auto-update/hmmer 
hmmer: 3.3 -> 3.3.1
 2020-07-28 14:04:04 -05:00
Mario Rodas
552a1f9278
itsx: enable on darwin 2020-07-28 13:48:55 -05:00
Mario Rodas
b7c9ca336f
hmmer: enable on darwin 2020-07-28 13:47:34 -05:00
R. RyanTM
58e7ed9d56 hmmer: 3.3 -> 3.3.1 2020-07-28 16:39:23 +00:00
Ken Micklas
7ae6e51bd4 gplates: 2.0.0 -> 2.2.0, unbreak 2020-07-27 20:54:18 -04:00
Daniël de Kok
655d902909 finalfrontier: 0.9.3 -> 0.9.4 
Changelog:
https://github.com/finalfusion/finalfrontier/releases/tag/0.9.4
 2020-07-27 11:02:09 +02:00
Daniël de Kok
2e97f552fd finalfusion-utils: init at 0.11.2 2020-07-27 10:00:47 +02:00
Vladyslav M
77d6eebc66
Merge pull request #90424 from kini/drat-trim/bump 
drat-trim: 2017-08-31 -> 2020-06-05
 2020-07-26 22:50:14 +03:00
Daniël de Kok
0f9afb2716
Merge pull request #92253 from danieldk/finalfrontier 
finalfrontier: init at 0.9.3
 2020-07-26 08:34:49 +02:00
Peter Simons
b4dd96b206 sad: mark package as broken because if depends on dropped ghc-8.4.4 
Ping @schmitthenner.
 2020-07-24 13:06:29 +02:00
Maximilian Bosch
a83e2e3662
Merge pull request #93742 from Xitian9/geogebra 
geogebra: 5-0-574-0 -> 5-0-593-0
 2020-07-24 11:34:38 +02:00
Evils
b6863cbfe7 kicad: fix build 
disable scripting support as 92261 broke wxPython_4_0
  and i haven't managed to get wxPython 4.1 to work

something caused makeWrapper to have to be added on its own
  not sure where it came from before...

and some cleanup
 2020-07-24 03:26:00 -04:00
Evils
e842233678 kicad-unstable: 2020-05-14 -> 2020-07-21 2020-07-24 03:26:00 -04:00
Stephen Morgan
d9e6338fec geogebra: 5-0-574-0 -> 5-0-593-0 2020-07-24 15:11:42 +10:00
Daniël de Kok
4dd9423b05 finalfrontier: init at 0.9.3 2020-07-23 10:05:33 +02:00
Robert Scott
fd5c0b94b2
Merge pull request #76960 from risicle/ris-hal-hardware-analyzer 
hal-hardware-analyzer: init at 2.0.0
 2020-07-21 22:08:05 +01:00
Daniël de Kok
622150e873
Merge pull request #93429 from danieldk/sortmerna-4.2.0 
sortmerna: 3.0.3 -> 4.2.0
 2020-07-21 09:34:01 +02:00
Robert Scott
d2d921b763 hal-hardware-analyzer: init at 2.0.0 2020-07-20 22:35:00 +01:00
Daniël de Kok
5bb161af08
Merge pull request #93351 from alyssais/gfan 
gfan: fix clang build on non-Darwin
 2020-07-19 10:23:13 +02:00
Daniël de Kok
dee4befc78
Merge pull request #93406 from lsix/add-gnu-gama 
gama: init at 2.09
 2020-07-19 08:49:37 +02:00
Lancelot SIX
9eccd6417a
gama: init at 2.09 2020-07-18 18:58:22 +01:00
Gabriel Ebner
3ffc16a834
Merge pull request #93375 from MrChico/cvc4_1.8 
cvc4: 1.6 -> 1.8
 2020-07-18 18:48:12 +02:00
Daniël de Kok
56c841393a sortmerna: 3.0.3 -> 4.2.0 
- Fixes build against rocksdb 6.10.2
- Use dynamic rocksdb and zlib libraries
- Build a dynamic binary
 2020-07-18 18:06:23 +02:00
Martin Lundfall
424936ed33 cvc4: 1.6 -> 1.8 
Co-authored-by: Gabriel Ebner <gebner@gebner.org>

Update pkgs/applications/science/logic/cvc4/default.nix

Co-authored-by: Gabriel Ebner <gebner@gebner.org>
 2020-07-18 17:48:10 +02:00
Vladyslav M
2076487221
rink: 0.4.5 -> 0.5.0 2020-07-18 13:30:05 +03:00
Keshav Kini
b28d329c62 drat-trim: 2017-08-31 -> 2020-06-05 2020-07-17 21:38:31 -07:00
Alyssa Ross
8f5eaa6deb
gfan: fix clang build on non-Darwin 
-fno-guess-branch-probability isn't a Darwin-specific thing, it's a
clang-specific thing.
 2020-07-17 15:30:24 +00:00
Ryan Mulligan
891e3cb973
Merge pull request #92575 from r-ryantm/auto-update/seaview 
seaview: 5.0.2 -> 5.0.4
 2020-07-15 21:23:13 -07:00
markuskowa
7204d9aa36
Merge pull request #93042 from r-ryantm/auto-update/gromacs 
gromacs: 2020.2 -> 2020.3
 2020-07-13 13:52:28 +02:00
R. RyanTM
215011c44d gromacs: 2020.2 -> 2020.3 2020-07-13 07:11:49 +00:00
Daniël de Kok
a36e044be2
Merge pull request #92957 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.0.8 -> 4.0.9
 2020-07-12 07:37:29 +02:00
Ben Wolsieffer
060c1ef6a5 qgroundcontrol: 4.0.8 -> 4.0.9 2020-07-11 15:27:23 -04:00
Florian Klink
785b558e66
Merge pull request #92781 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.104 -> 3.3.105
 2020-07-11 13:57:57 +02:00
Timo Kaufmann
9aab32b51c
Merge pull request #92796 from r-ryantm/auto-update/jmol 
jmol: 14.31.0 -> 14.31.2
 2020-07-09 18:43:50 +02:00
Austin Seipp
44f8640ae4
mcy: 2020.03.21 -> 2020.07.06 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-07-09 10:33:09 -05:00
R. RyanTM
46e8ec7927 jmol: 14.31.0 -> 14.31.2 2020-07-09 14:44:34 +00:00
Austin Seipp
a8e8e99458
symbiyosys: 2020.05.18 -> 2020.07.03 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-07-09 09:12:41 -05:00
Austin Seipp
63e55fae00
yosys: 2020.06.19 -> 2020.07.07 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-07-09 09:12:41 -05:00
R. RyanTM
6e3fd6892c gtkwave: 3.3.104 -> 3.3.105 2020-07-09 10:06:28 +00:00
Jörg Thalheim
141f9ce807
cryptominisat: 5.7.1 -> 5.8.0 (#92681) 
Co-authored-by: Jörg Thalheim <joerg@thalheim.io>
 2020-07-09 08:24:55 +01:00
Jörg Thalheim
223c91d032 cryptominisat: use fetchpatch 2020-07-09 08:21:21 +01:00
Jörg Thalheim
e3d703bb92 cryptominisat: fix build on darwin 2020-07-09 08:11:28 +01:00
Daniël de Kok
26d250d4b3
Merge pull request #92738 from r-ryantm/auto-update/yacas 
yacas: 1.8.0 -> 1.9.1
 2020-07-09 09:02:26 +02:00
R. RyanTM
d27df249ee yacas: 1.8.0 -> 1.9.1 2020-07-08 18:25:49 +00:00
R. RyanTM
3628d0d893 cryptominisat: 5.7.1 -> 5.8.0 2020-07-08 04:51:18 +00:00
R. RyanTM
887f1978f6 tlaplusToolbox: 1.6.0 -> 1.7.0 2020-07-07 21:21:49 +00:00
R. RyanTM
02fe1ec6ec gwyddion: 2.55 -> 2.56 2020-07-07 10:11:50 -07:00
R. RyanTM
e6113be804 seaview: 5.0.2 -> 5.0.4 2020-07-07 13:30:35 +00:00
Benjamin Hipple
0f94e2413d
Merge pull request #91071 from bcdarwin/minc-tools-build-nifti-tools 
minc-tools: actually build Nifti support
 2020-07-06 17:45:48 -04:00
Ben Darwin
28becad9be minc-tools: actually build Nifti support 2020-07-06 11:09:33 -04:00
Justin Bedo
3139597277
whisper: init at 2.0.1 2020-07-06 18:59:45 +10:00
Benjamin Hipple
4f4e0477b7
Merge pull request #90320 from wucke13/apmplanner-2 
apmplanner2: 2.0.27-rc1 -> 2.0.28-rc1
 2020-07-05 20:23:52 -04:00
Benjamin Hipple
b82bdcd3c3
Merge pull request #90311 from wucke13/betaflight-configurator 
betaflight-configurator: 10.6.0 -> 10.7.0
 2020-07-05 19:52:10 -04:00
Ryan Mulligan
9dcf134813
Merge pull request #92317 from r-ryantm/auto-update/last 
last: 1061 -> 1066
 2020-07-05 16:09:42 -07:00
R. RyanTM
c0ebe721a9 marvin: 20.13.0 -> 20.15.0 2020-07-05 15:06:16 +00:00
R. RyanTM
12b36a950b ltl2ba: 1.2 -> 1.3 2020-07-05 14:25:04 +00:00
R. RyanTM
aca998de5e last: 1061 -> 1066 2020-07-05 08:43:25 +00:00
Justin Bedo
a3d6e7b4b4
lumpy: init 0.3.0 2020-07-05 09:19:11 +10:00
Justin Bedo
617483d27a
sambamba: init 0.7.1 2020-07-05 09:10:21 +10:00
Justin Bedo
2ada3b5d3e
samblaster: init 0.1.24 2020-07-05 09:10:21 +10:00
Mario Rodas
c70f0c6548
Merge pull request #92257 from r-ryantm/auto-update/tebreak 
tebreak: 1.0 -> 1.1
 2020-07-04 12:45:00 -05:00
R. RyanTM
d8956ba50e tebreak: 1.0 -> 1.1 2020-07-04 10:45:49 +00:00
Dmitry Kalinkin
b234812a38
Merge pull request #92127 from veprbl/pr/snakemake_5_19_3 
snakemake: 5.17.0 -> 5.19.3
 2020-07-03 14:03:37 -04:00
Mario Rodas
212b0d32ca
Merge pull request #92169 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.6 -> 4.6.0
 2020-07-03 07:59:10 -05:00
R. RyanTM
97c089f2f7 gmsh: 4.5.6 -> 4.6.0 2020-07-03 11:56:48 +00:00
Dmitry Kalinkin
eb121e0901
snakemake: 5.17.0 -> 5.19.3 2020-07-02 23:36:20 -04:00
R. RyanTM
6630edb1bd picard-tools: 2.23.0 -> 2.23.1 2020-07-02 18:09:49 -07:00
R. RyanTM
a07fe7164b workcraft: 3.2.6 -> 3.3.0 2020-07-02 10:07:55 -07:00
Gabriel Ebner
ab4bc959e7
Merge pull request #92044 from r-ryantm/auto-update/lean 
lean: 3.16.2 -> 3.16.5
 2020-07-02 15:27:58 +02:00
R. RyanTM
39ee2ab9c0 lean: 3.16.2 -> 3.16.5 2020-07-02 13:12:58 +00:00
Vincent Laporte
d34bde6ac7 why3: compatibility with JSoO 3.6.0 2020-06-28 09:59:04 +02:00
Markus Kowalewski
187b4a2e04
root: add license 2020-06-27 00:43:21 +02:00
Markus Kowalewski
52f9aebe64
qalculate-gtk: add license 2020-06-27 00:37:44 +02:00
Markus Kowalewski
c317091b5a
mrbayes: fix license 2020-06-26 11:06:35 +02:00
Markus Kowalewski
83dda57082
emboss: fix license 2020-06-26 11:05:24 +02:00
zowoq
c7e61112df treewide: remove deprecated value Application from makeDesktopItem 2020-06-25 12:18:37 +10:00
Daniël de Kok
5f0cf22c59 cadical: enable tests 2020-06-24 15:10:53 -07:00
Maximilian Bosch
44b3530cf1
Merge pull request #90491 from shnarazk/cadical-1.3.0-PR 
cadical: 1.2.1 -> 1.3.0
 2020-06-23 23:33:10 +02:00
Maximilian Bosch
3c3840ecd6
stellarium: 0.20.1 -> 0.20.2 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.2
 2020-06-22 20:30:42 +02:00
Sébastien Maret
b307674e02
gildas: 20200201_a -> 20200601_b (#91096) 2020-06-19 10:40:38 -04:00
Vincent Laporte
a8bb61222f coq_8_12: init at 8.12+β1 2020-06-19 12:28:42 +02:00
Dmitry Kalinkin
df3a188b46
root5: 5.34.36 -> 5.34.38 
Fixes: https://nvd.nist.gov/vuln/detail/CVE-2017-1000203
 2020-06-18 16:42:02 -04:00
R. RyanTM
7b104edf89 eagle: 9.6.1 -> 9.6.2 2020-06-17 11:04:13 -07:00
evils
b8a03a66b3
fahclient: 7.6.9 -> 7.6.13 (#99595) 2020-10-05 14:40:10 +02:00
Gabriel Ebner
9fadca2bcc qalculate-gtk: 3.12.1 -> 3.13.0 2020-10-04 14:53:10 +02:00
Mario Rodas
c89c819abd
Merge pull request #98672 from r-ryantm/auto-update/bcftools 
bcftools: 1.10.2 -> 1.11
 2020-10-02 23:57:06 -05:00
Ryan Mulligan
6aadae67de
Merge pull request #81550 from scalavision/add-kent-utils-to-bioinf 
kent: init at 394
 2020-10-02 09:05:51 -07:00
Patrick Hilhorst
f7e390e6d4 treewide: fix redirected urls (run 3) 
Related:
 - 9fc5e7e473
 - 593e11fd94
 - 508ae42a0f

Since the last time I ran this script, the Repology API changed, so I had to
adapt the script used in the previous PR. The new API should be more robust, so
overall this is a positive (no more grepping the error messages for our relevant
data but just a nice json structure).

Here's the new script I used:

```sh
curl https://repology.org/api/v1/repository/nix_unstable/problems \
   | jq -r '.[] | select(.type == "homepage_permanent_https_redirect") | .data | "s@\(.url)@\(.target)@"' \
   | sort | uniq | tee script.sed
find -name '*.nix' | xargs -P4 -- sed -f script.sed -i
```

I will also add this script to `maintainers/scripts`.
 2020-10-02 09:01:35 -07:00
Scalavision
a6f124f57b kent: init at 404 2020-10-01 19:50:37 +02:00
R. RyanTM
f4d3204486 bcftools: 1.10.2 -> 1.11 2020-09-24 18:53:07 +00:00
Austin Seipp
9954d5a583
verilator: 4.034 -> 4.036 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-06-16 11:19:57 -05:00
Narazaki, Shuji
d6c90aea17 cadical: 1.2.1 -> 1.3.0 2020-06-15 22:56:41 +09:00
Ryan Mulligan
c2df0fb59a
Merge pull request #90419 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.9 -> 2.23.0
 2020-06-15 05:48:36 -07:00
R. RyanTM
57a49ce3a4 picard-tools: 2.22.9 -> 2.23.0 2020-06-15 00:57:30 +00:00
Steve Purcell
af76ba6c57 fastdownward: 2019-05-13 -> 19.12 
- Use supplied build.py mechanism instead of working around it
- Freeze release location into resulting Python so fast-downward script actually works
 2020-06-15 10:40:53 +12:00
R. RyanTM
e63bfcef96 lean: 3.15.0 -> 3.16.2 2020-06-14 19:32:20 +00:00
wucke13
6bd79857e9 apmplanner2: 2.0.27-rc1 -> 2.0.28-rc1 2020-06-14 13:27:38 +02:00
wucke13
e4183aaa76 betaflight-configurator: 10.6.0 -> 10.7.0 2020-06-14 12:32:59 +02:00
Steve Purcell
1058f8f8cf fast-downward: also build on darwin 2020-06-14 17:55:14 +12:00
Austin Seipp
23c9c3779d
symbiyosys: 2020.03.24 -> 2020.05.18 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-06-11 23:14:07 -05:00
Austin Seipp
13e52db31e
yosys: 2020.03.24 -> 2020.06.11 
Also includes a bump to `abc-verifier`.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-06-11 23:14:07 -05:00
Vladimír Čunát
a5f5d020c6
Merge branch 'staging-next' 2020-06-10 16:13:48 +02:00
Ryan Mulligan
d456800b17
Merge pull request #90045 from r-ryantm/auto-update/marvin 
marvin: 20.12.0 -> 20.13.0
 2020-06-10 06:01:10 -07:00
markuskowa
86d193c305
Merge pull request #90013 from r-ryantm/auto-update/jmol 
jmol: 14.30.2 -> 14.31.0
 2020-06-10 14:41:33 +02:00
R. RyanTM
0f890be404 marvin: 20.12.0 -> 20.13.0 2020-06-10 12:01:26 +00:00
R. RyanTM
c04e2c41ca jmol: 14.30.2 -> 14.31.0 2020-06-10 03:50:47 +00:00
Jan Tojnar
c637cbe992
Merge branch 'master' into staging-next 2020-06-10 04:10:34 +02:00
R. RyanTM
b1049a61f1 star: 2.7.3a -> 2.7.4a 2020-06-09 02:32:13 +00:00
Symphorien Gibol
0a488516be boolector: 3.0.0 -> 3.2.1 
enable tests
optionnally enable gmp
 2020-06-08 17:32:07 -05:00
Symphorien Gibol
90b75531a5 btor2tools: pre55 -> 1.0.0-pre 
version comes from the VERSION file in the repo
 2020-06-08 17:32:07 -05:00
Frederik Rietdijk
dc33419285 Merge master into staging-next 2020-06-08 12:06:12 +02:00
1000101
277bbb8efe formatting: fix missing leading whitespace 2020-06-08 09:37:17 +02:00
Ryan Mulligan
38b720e653
Merge pull request #89667 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.8 -> 2.22.9
 2020-06-07 15:38:23 -07:00
Frederik Rietdijk
155382cae3
Merge pull request #89515 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 3.5.5 -> 4.0.8
 2020-06-07 15:57:35 +02:00
Frederik Rietdijk
6b8223e634 Merge master into staging-next 2020-06-07 09:25:12 +02:00
Markus Kowalewski
5dbe275aac
molden: 6.2 -> 6.3 2020-06-06 23:41:01 +02:00
R. RyanTM
170ea57065 picard-tools: 2.22.8 -> 2.22.9 2020-06-06 15:43:25 +00:00
R. RyanTM
25300419fd lean: 3.14.0 -> 3.15.0 2020-06-06 10:55:48 +00:00
Sohalt
877af72161
Fixup 
Co-authored-by: puzzlewolf <23097564+puzzlewolf@users.noreply.github.com>
 2020-06-05 12:44:13 +02:00
Ben Wolsieffer
5d3c56822a qgroundcontrol: 3.5.5 -> 4.0.8 2020-06-04 19:06:45 -04:00
Frederik Rietdijk
08900c0554 Merge master into staging-next 2020-06-04 15:25:54 +02:00
Lassulus
a15262665a
Merge pull request #88466 from puzzlewolf/gazebo_remove 
gazebo: remove
 2020-06-04 12:47:42 +02:00
Daiderd Jordan
7b3a2963d1
treewide: replace base64 encoded hashes 2020-06-03 18:35:19 +02:00
zimbatm
9f15e95ff2
Merge pull request #89308 from LnL7/remove-sri-hashes 
Remove sri hashes
 2020-06-02 16:24:01 +02:00
Timo Kaufmann
374016fb1c
Merge pull request #89111 from timokau/gap-cleanup 
gap: cleanup
 2020-06-02 10:55:46 +02:00
Daiderd Jordan
b7ddbd52bd
treewide: replace SRI hashes 2020-06-01 15:24:19 +02:00
puzzlewolf
3b26ba8b91 maintainers: remove pxc 2020-05-30 18:38:37 +02:00
puzzlewolf
c906c45fec gazebo, sdformat: remove 2020-05-30 18:38:28 +02:00
Jonathan Ringer
3a4fec8232 mxnet: use blas.provider, fix build 2020-05-28 15:08:47 -07:00
Timo Kaufmann
6579f814cf gap: remove explicit configreFlags 
System gmp is now the default.
 2020-05-28 16:07:38 +02:00
Timo Kaufmann
d689f3fe72 gap: add readline support 
Technically optional but strongly recommended from upstream. Replaces
their own implementation for input parsing.
 2020-05-28 16:06:34 +02:00
Timo Kaufmann
f15c816584 gap: use https for the homepage 2020-05-28 15:58:41 +02:00
Timo Kaufmann
9e245a0878 gap: fix comment typo 2020-05-28 15:57:50 +02:00
Timo Kaufmann
e2e45e163c gap: remove m4 dependency 
No longer necessary, since the build system was significantly overhauled
/ replaced by Max Horn.
 2020-05-28 15:55:07 +02:00
Timo Kaufmann
c269b51c38 gap: move to new source URL 
GAP downloads moved to a new subdomain. The old one still redirects, but
the new one is the "source of truth" so we should switch to that.
 2020-05-28 15:53:56 +02:00
Timo Kaufmann
a4c76b970c gap: use the check target for install checks 
As suggested by Max Horn.

This exists since gap 4.10 and will only run the install checks once
while also exiting with an appropriate exit code. This new check has
uncovered some test failures, which are harmless and actually disabled
in a future gap release. The error-detection code for the previous test
target was probably broken.
 2020-05-28 15:50:46 +02:00
Timo Kaufmann
d34fa6ed44
Merge pull request #89058 from timokau/palp-2.11-hash-fixup-2 
palp: fix hash
 2020-05-27 22:34:12 +00:00
Timo Kaufmann
b74991703a palp: fix hash 
The file was modified for the second time now. I'll try to contact
upstream about this. Maybe 2.11 is not actually a finished product yet.
 2020-05-28 00:20:30 +02:00
R. RyanTM
8295aa6d8b cryptominisat: 5.7.0 -> 5.7.1 2020-05-27 13:51:14 -07:00
R. RyanTM
f4e01832ed marvin: 20.10.0 -> 20.12.0 2020-05-27 12:11:37 -07:00
R. RyanTM
5841bc46f8 proverif: 2.00 -> 2.01 2020-05-27 12:07:52 -07:00
Jörg Thalheim
660854a266
Merge pull request #88916 from zowoq/patches 2020-05-27 06:54:01 +01:00
Benjamin Hipple
f04a5af0cc
Merge pull request #82180 from bcdarwin/bppcore 
bppsuite: init at 2.4.1
 2020-05-26 21:07:25 -04:00
Lassulus
ed25a12070
Merge pull request #70487 from esclear/xflr5 
xflr5: init at 6.47
 2020-05-27 00:00:05 +02:00
zowoq
cb4cc7a480 sad: use patch file extension 2020-05-26 14:50:50 +10:00
Benjamin Hipple
d3082a31cd
Merge pull request #87544 from bcdarwin/vtk-8 
vtk: 7.1.1 -> 8.2.0
 2020-05-26 00:24:28 -04:00
Ben Darwin
45cd7beeb2 bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
Ryan Mulligan
85898181b0
Merge pull request #88844 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.7 -> 2.22.8
 2020-05-25 06:09:11 -07:00
Mario Rodas
bc4469005e
Merge pull request #88824 from r-ryantm/auto-update/lean 
lean: 3.13.1 -> 3.14.0
 2020-05-24 22:49:35 -05:00
R. RyanTM
a60a040236 picard-tools: 2.22.7 -> 2.22.8 2020-05-25 01:25:17 +00:00
R. RyanTM
7573e99a60 lean: 3.13.1 -> 3.14.0 2020-05-24 22:22:11 +00:00
R. RyanTM
c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 (#88766) 2020-05-24 13:32:14 -04:00
Dmitry Kalinkin
9eb3f39bca
Merge pull request #88713 from veprbl/pr/sherpa_2_2_10 
sherpa: 2.2.9 -> 2.2.10
 2020-05-23 21:56:57 -04:00
Dmitry Kalinkin
e6282f9f6c
sherpa: 2.2.9 -> 2.2.10 2020-05-23 16:22:08 -04:00
Ryan Mulligan
5505be7840
Merge pull request #88568 from r-ryantm/auto-update/last 
last: 1060 -> 1061
 2020-05-23 11:42:47 -07:00
Frederik Rietdijk
bc3c3b4a59 pythonPackages.kicad: bindings to kicad 
Add the Python bindings for kicad.

Following now functions

    $ nix run "(import ./. {}).python3.withPackages(ps: with ps; [ kicad  ])" -c python3 -c "import pcbnew"

Have not tested this any further.
 2020-05-23 15:44:14 +02:00
Mario Rodas
d30b7592c4
Merge pull request #88363 from r-ryantm/auto-update/clp 
clp: 1.17.5 -> 1.17.6
 2020-05-23 00:31:57 -05:00
R. RyanTM
25841d95c5 last: 1060 -> 1061 2020-05-22 02:21:55 +00:00
zimbatm
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol 
fahcontrol: 7.6.9 -> 7.6.13
 2020-05-21 12:12:37 +02:00
zimbatm
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer 
fahviewer: 7.6.9 -> 7.6.13
 2020-05-21 12:12:01 +02:00
R. RyanTM
f52889cd38 fahviewer: 7.6.9 -> 7.6.13 2020-05-21 08:53:14 +00:00
Evils
d798396684 kicad-unstable: 2020-05-06 -> 2020-05-14 2020-05-21 10:49:18 +02:00
Evils
a791245d51 kicad: 5.1.5 -> 5.1.6 2020-05-21 10:49:18 +02:00
R. RyanTM
0cc843b538 fahcontrol: 7.6.9 -> 7.6.13 2020-05-21 06:24:27 +00:00
Vincent Laporte
48f0d8b3c8 coq_8_11: 8.11.1 → 8.11.2 2020-05-20 19:21:42 +02:00
Timo Kaufmann
b811d52b9c
Merge pull request #88428 from timokau/nauty-27r1 
nauty: 26r12 -> 27r1
 2020-05-20 13:22:15 +00:00
Timo Kaufmann
d0e171395a nauty: 26r12 -> 27r1 
Changes: http://pallini.di.uniroma1.it/changes24-27.txt
 2020-05-20 14:59:46 +02:00
Timo Kaufmann
a276c4485c nauty: add meta.changelog 2020-05-20 14:59:46 +02:00
Ryan Mulligan
aae8733f96
Merge pull request #88210 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.4 -> 2.22.7
 2020-05-20 05:08:01 -07:00
R. RyanTM
d1b7e3f8cc clp: 1.17.5 -> 1.17.6 2020-05-20 10:04:01 +00:00
R. RyanTM
3450729658 picard-tools: 2.22.4 -> 2.22.7 2020-05-19 21:56:38 +00:00
Timo Kaufmann
7447395f9d
Merge pull request #88177 from timokau/palp-2.11-hash-fixup 
palp: fix hash
 2020-05-19 18:43:59 +00:00
Timo Kaufmann
aae9af9632 palp: fix hash 
It looks like the upstream tarball was changed since I updated palp 3
days ago. Hopefully that won't happen again.
 2020-05-19 17:50:43 +02:00
Gabriel Ebner
ade0eba99d
Merge pull request #88131 from r-ryantm/auto-update/elan 2020-05-19 09:38:28 +02:00
Lancelot SIX
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0 
cytoscape: 3.7.2 -> 3.8.0
 2020-05-19 08:32:48 +01:00
R. RyanTM
748e2fcf6c elan: 0.10.0 -> 0.10.2 2020-05-19 05:02:43 +00:00
Timo Kaufmann
91da9ed129
Merge pull request #87944 from timokau/palp-2.11 
palp: 2.1 -> 2.11
 2020-05-18 19:58:59 +00:00
Ryan Mulligan
fdf4439acc
Merge pull request #87494 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.0 -> 3.14.1
 2020-05-18 08:06:19 -07:00
Timo Kaufmann
d65850e975 palp: 2.1 -> 2.11 
According to the homepage[1]:

> Small change in Mori.h for compatibility with gcc_10 (thanks to J.
  Puydt) [May 15, 2020].

Disabling the strictoverflow seems to be no longer necessary (I'm
relying on the check phase here).

[1] http://hep.itp.tuwien.ac.at/~kreuzer/CY/CYpalp.html
 2020-05-16 15:07:57 +02:00
Timo Kaufmann
51de320353 palp: add meta.changelog 2020-05-16 15:05:45 +02:00
Mario Rodas
b022ecbf5d
lean: 3.10.0 -> 3.13.1 2020-05-16 04:20:00 -05:00
Matt Huszagh
e8215cd634 colmap: update boost to 1.72 to fix build 2020-05-15 09:42:36 -07:00
R. RyanTM
d11e5f1a4e verilator: 4.032 -> 4.034 2020-05-12 22:27:21 -07:00
R. RyanTM
e07dfd38f1 wxmaxima: 20.02.4 -> 20.04.0 2020-05-12 22:12:53 -07:00
Ben Darwin
5e716bf469 vtk: 7.1.1 -> 8.2.0 
- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5
 2020-05-11 17:54:29 -04:00
Jörg Thalheim
3a9543b778
Merge pull request #82634 from evils/kicad 2020-05-11 10:27:18 +01:00
R. RyanTM
ae4d9cb9a0 stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00
R. RyanTM
92d970c766
snakemake: 5.15.0 -> 5.16.0 (#87496) 2020-05-10 10:09:53 -04:00
R. RyanTM
85b39960b5 SPAdes: 3.14.0 -> 3.14.1 2020-05-10 13:06:19 +00:00
sohalt
7bf616dd77 Correct license 2020-05-10 00:49:56 +02:00
sohalt
9ec71eb051 use https 2020-05-10 00:46:00 +02:00
Dmitry Kalinkin
e80302dc7d
Merge pull request #86142 from bcdarwin/itk-5.1.0 
Itk: 5.0.1 -> 5.1.0
 2020-05-09 15:03:28 -04:00
Luz
5e40913eac librepcb: 0.1.3 -> 0.1.4 2020-05-09 09:10:20 +02:00
albakham
0c0f353d62 rofi-calc: 1.6 -> 1.7 2020-05-08 22:12:49 -04:00
Gabriel Ebner
115fa1c129 elan: 0.9.0 -> 0.10.0 2020-05-08 17:17:03 +02:00
Pavol Rusnak
6abf4a43ad
treewide: per RFC45, remove more unquoted URLs 2020-05-08 15:20:47 +02:00
sohalt
de81e8b961 isabelle: 2018 -> 2020 2020-05-08 00:33:03 +02:00
Gabriel Ebner
f6f5f6a30f elan: 0.8.0 -> 0.9.0 2020-05-07 15:35:13 +02:00
Mario Rodas
60762e9524
Merge pull request #86216 from bcdarwin/mrtrix-update 
mrtrix: 3.0_RC3_latest -> 3.0.0
 2020-05-07 06:57:44 -05:00
R. RyanTM
bdcefc1053 marvin: 20.9.0 -> 20.10.0 2020-05-06 23:16:23 -07:00
Evils
2d3d8c4d66 kicad-unstable: 2020-04-25 -> 2020-05-06 2020-05-07 02:15:57 +02:00
Evils
1059fdf143 kicad: link utils; clean up wrapper installPhase 2020-05-07 01:54:51 +02:00
Evils
95e4e33bdf kicad-unstable-small: init to make kicad-unstable 
the -small packages depend on all hydra buildable dependencies
the non-small ones depend on packages3d which exceeds hydra's limit

set platforms to all (kicad is cross-platform)
clarify package differences in the description

set maintainers on just the top level derivation

switch -unstable to not save debug symbols

indicate patch in version string

note broken dependencies
 2020-05-07 01:54:50 +02:00
Evils
18a1b153ac kicad: expose base and libraries attributes 2020-05-07 01:54:50 +02:00
Yurii Rashkovskii
c73875ea1e tlaplus: 1.5.6 -> 1.7.0 2020-05-06 12:26:10 -07:00
Jörg Thalheim
3c4096f18b
Merge pull request #86808 from doronbehar/rename-opencv 2020-05-05 20:19:50 +01:00
tim put
33b968049a
kstars: init at 2.9.8 (#86032) 
* kstars: init at 2.9.8

* Update pkgs/applications/science/astronomy/kstars/default.nix

Co-authored-by: Manuel Bärenz <programming@manuelbaerenz.de>

Co-authored-by: Manuel Bärenz <programming@manuelbaerenz.de>
 2020-05-05 20:38:28 +02:00
markuskowa
73dc3fc400
Merge pull request #86887 from r-ryantm/auto-update/gromacs 
gromacs: 2020.1 -> 2020.2
 2020-05-05 19:19:04 +02:00
Doron Behar
53effac040 mathematica: explicitly use opencv2 2020-05-05 13:48:55 +03:00
Lancelot SIX
b9d13090a8
cytoscape: 3.7.2 -> 3.8.0 
See https://cytoscape.org/release_notes_3_8_0.html for release
information
 2020-05-05 09:52:27 +01:00
R. RyanTM
ed5575071f gromacs: 2020.1 -> 2020.2 2020-05-05 05:59:23 +00:00
Ben Darwin
6f1430a802 ezminc: switch from itk5 to itk4 branch 
- itk5 branch currently lacks support for itk 5.1
 2020-05-05 00:08:04 -04:00
Mario Rodas
3b6c399fc3
Merge pull request #86720 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.2 -> 2.22.4
 2020-05-04 06:01:31 -05:00
R. RyanTM
0a115f8087 cryptominisat: 5.6.8 -> 5.7.0 2020-05-04 01:41:26 -07:00
R. RyanTM
877b1cdad7 picard-tools: 2.22.2 -> 2.22.4 2020-05-04 04:07:44 +00:00
Mario Rodas
3253c03d2e
lean: 3.9.0 -> 3.10.0 2020-05-02 04:20:00 -05:00
Benjamin Hipple
6b21541772
Merge pull request #86101 from dkudriavtsev/magic-vlsi 
magic-vlsi: init at 8.3.5
 2020-05-02 13:51:41 -04:00
R. RyanTM
a930faab93 mxnet: 1.4.1 -> 1.6.0 2020-05-02 10:17:38 +02:00
R. RyanTM
d0afae4298 dcm2niix: 1.0.20190902 -> 1.0.20200331 2020-05-02 10:16:22 +02:00
Wulfsta
5dbc4f7fda elmerfem: init at release-8.4 2020-05-01 18:35:57 -07:00
Timo Kaufmann
7866440f12
Merge pull request #86274 from samlich/sage-matrix-double-dense 
sage: fix doctest matrix_double_dense is_unitary
 2020-05-01 22:12:10 +00:00
Peter Simons
205e4dffd5
Merge pull request #86081 from jabranham/update-r 
R: 3.6.3 --> 4.0.0 & update packages
 2020-05-01 20:25:14 +02:00
samlich
c0bd938e5c
sage: fix doctest matrix_double_dense is_unitary 2020-05-01 16:04:23 +00:00
R. RyanTM
7333b8cd6d eagle: 9.6.0 -> 9.6.1 2020-05-01 09:09:10 +02:00
Dmitry Kalinkin
babf5477f5
Merge pull request #86251 from veprbl/pr/sherpa_2_2_9 
sherpa: 2.2.8 -> 2.2.9
 2020-04-29 19:10:43 -04:00
Jan Tojnar
2b5e2ffe0a
Merge pull request #86165 from jtojnar/libusb-compat-rename 2020-04-29 08:26:08 +02:00
Dmitry Kalinkin
ae0685129b
sherpa: 2.2.8 -> 2.2.9 2020-04-28 16:46:02 -04:00
evils
e257a92472
foldingathome: 7.5.1 -> 7.6.9 (#86171) 2020-04-28 17:20:43 +00:00
Ben Darwin
70171d321e mrtrix: 3.0_RC3_latest -> 3.0.0 2020-04-28 10:37:06 -04:00
Daniël de Kok
3ba5bc7130 fasttext: 0.9.1 -> 0.9.2 
Changelog:

https://github.com/facebookresearch/fastText/releases/tag/v0.9.2
 2020-04-28 12:14:54 +02:00
Jan Tojnar
e89e2edc73
libusb-compat-0_1: rename from libusb 2020-04-28 05:33:41 +02:00
Dmitry Kudriavtsev
69f54c1e19 magic-vlsi: init at 8.3.5 2020-04-27 00:13:59 -07:00
Alex Branham
8ce6552d64
R: 3.6.3 -> 4.0.0 2020-04-26 17:06:07 -04:00
Evils
b80bd001e2
kicad-unstable: 2020-02-10 -> 2020-04-25 
cc #82634
 2020-04-26 13:38:37 -04:00
Evils
75963b9160
kicad: update.sh: set -e 
and some more suggestions from veprbl

warn if an empty item gets through anyway

and use UTC time

cc #82634
 2020-04-26 13:38:13 -04:00
Renato Garcia
22133c6bf3
snakemake: 5.13.0 -> 5.15.0 (#85913) 2020-04-25 09:19:54 -04:00
Konrad Borowski
f527f9db3a snakemake: update homepage link to use HTTPS 2020-04-24 19:44:59 -07:00
Konrad Borowski
40dd2c27c6 rink: update homepage link to use HTTPS 2020-04-24 19:44:59 -07:00
Ben Wolsieffer
bc93f123ea mavproxy: 1.8.18 -> 1.8.19 2020-04-24 18:03:57 -07:00
Lassulus
d0b1de5491
Merge pull request #70401 from bzizou/quast 
Quast: init at 5.0.2
 2020-04-24 20:26:04 +02:00
Bruno Bzeznik
db48393552 init at 3.0.0-beta14 2020-04-24 11:20:14 +02:00
Bruno Bzeznik
eb51b462aa Quast: init at 5.0.2 2020-04-24 10:11:54 +02:00
Pavol Rusnak
461a252bee
verifast: change license to MIT 
It seems verifast was relicensed to MIT in 2016:
b3c1bce76a

As this was the only package using lib.licenses.msrla I dropped it.
 2020-04-23 09:59:33 +00:00
worldofpeace
b4d5dd861b
Merge pull request #84673 from mmilata/qt5-mkDerivation-stdenv 
Use qt5's mkDerivation in packages that otherwise crash
 2020-04-22 13:39:46 -04:00
Martin Milata
7d1c2c05c5 caneda: use qt5's mkDerivation 2020-04-22 15:21:49 +02:00
Frederik Rietdijk
ec21df329a
Merge pull request #85636 from matthewbauer/blas-lapack-fix-fallout-from-83888 
BLAS/LAPACK fix fallout from #83888
 2020-04-21 19:59:16 +02:00
Justin Bedo
d8d6ecc418 mosdepth: 0.2.6 -> 0.2.9 2020-04-21 19:42:05 +02:00
Maximilian Bosch
68684b6376
stellarium: 0.20.0 -> 0.20.1 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.1
 2020-04-21 18:05:15 +02:00
Matthew Bauer
ff2f2644f8 blas,lapack: use isILP64 instead of is64bit 
This is a better name since we have multiple 64-bit things that could
be referred to.

LP64  : integer=32, long=64, pointer=64
ILP64 : integer=64, long=64, pointer=64
 2020-04-20 16:02:43 -05:00
markuskowa
d9af81af16
Merge pull request #85006 from r-ryantm/auto-update/verilator 
verilator: 4.030 -> 4.032
 2020-04-20 16:51:31 +02:00
Benjamin Hipple
e4db75f46d
Merge pull request #84535 from bcdarwin/update-beluga 
beluga: 20180403 -> unstable-2020-03-11
 2020-04-19 22:53:50 -04:00
Ben Darwin
ad7b7367b6 beluga: 20180403 -> unstable-2020-03-11 2020-04-19 21:54:06 -04:00
Mario Rodas
f37c9226fc
lean: 3.8.0 -> 3.9.0 2020-04-18 04:20:00 -05:00
Matthew Bauer
97fc083fd4 giac: broken on 64-bit blas 2020-04-17 16:24:31 -05:00
Matthew Bauer
1c8aba8334 treewide: use blas and lapack 
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.

treewide: cleanup from blas/lapack changes

A few issues in the original treewide:

- can’t assume blas64 is a bool
- unused commented code
 2020-04-17 16:24:09 -05:00
worldofpeace
433ea74af1 nasc: fix build 2020-04-15 17:19:47 -04:00
AndersonTorres
3b91c3de8f gp2c: 0.0.11pl2 -> 0.0.11pl3 2020-04-15 00:45:28 -03:00
Benjamin Hipple
17a1bf5dbd
Merge pull request #85069 from r-ryantm/auto-update/ginac 
ginac: 1.7.8 -> 1.7.9
 2020-04-12 11:18:43 -04:00
R. RyanTM
9b5aad0644 ginac: 1.7.8 -> 1.7.9 2020-04-12 12:04:38 +00:00
R. RyanTM
3fcbc7545c verilator: 4.030 -> 4.032 2020-04-11 15:46:52 +00:00
Michael Reilly
84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
Mario Rodas
8e537ad391
lean: 3.7.2 -> 3.8.0 2020-04-09 10:40:00 -05:00
Matt Huszagh
fc66192b37 fparser: init at 4.5.1 2020-04-09 11:28:21 -07:00
Jonathan Ringer
3238302827 libpoly: fix src 2020-04-09 11:22:53 -07:00
R. RyanTM
f4a9fe36fa libpoly: 0.1.7 -> 0.1.8 2020-04-09 10:29:28 -07:00
Timo Kaufmann
b72fd98789
Merge pull request #84666 from jonringer/repofy-palp 
palp: correct metadata for repology
 2020-04-08 11:44:33 +00:00
Gabriel Ebner
e71c0d80a1
Merge pull request #84583 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.8.0 -> 3.8.0a
 2020-04-08 11:01:33 +02:00
Vincent Laporte
f4ff33cce6 alt-ergo: 2.3.1 → 2.3.2 2020-04-08 10:23:48 +02:00
Jonathan Ringer
f89b76d9db
palp: correct metadata for repology 2020-04-07 14:08:03 -07:00
R. RyanTM
67ea5a0081 qalculate-gtk: 3.8.0 -> 3.8.0a 2020-04-07 10:29:32 +00:00
Mario Rodas
c9ce292597
Merge pull request #84383 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.4 -> 4.5.6
 2020-04-05 20:03:05 -05:00
R. RyanTM
b43965986f gmsh: 4.5.4 -> 4.5.6 2020-04-05 19:28:16 +00:00
Vincent Laporte
d6a8d0ca5b coq_8_11: 8.11.0 → 8.11.1 2020-04-05 15:32:32 +02:00
Frederik Rietdijk
866c5aa090 Merge master into staging-next 2020-04-05 08:33:39 +02:00
Jan Tojnar
418628e162
dsview: fix build 
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
 2020-04-05 01:13:14 +02:00
Timo Kaufmann
02b1f2a2de
Merge pull request #83224 from shnarazk/cadical-pr 
cadical: init at 1.2.1
 2020-04-04 15:44:04 +00:00
Narazaki, Shuji
c5a12e33d2 cadical: init at 1.2.1 2020-04-05 00:22:36 +09:00
Jan Tojnar
08cf27e5d9
libsigrok4dsl: fix build 
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
 2020-04-04 10:50:34 +02:00
Dmitry Kalinkin
99a236b477
Merge pull request #83914 from cgevans/gwyddion-darwin 
gwyddion: support darwin
 2020-04-01 21:44:21 -04:00
Constantine Glen Evans
cacbbe92bf
gwyddion: add darwin support 
Gwyddion will build on Darwin, but gnome2.gtkglext is broken there,
and so I am disabling it as an optional dependency here when building
on Darwin.
 2020-04-01 17:50:36 -07:00
R. RyanTM
92c8881358 picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
Timo Kaufmann
83fd89945d
Merge pull request #79661 from luc65r/pkg/cemu 
cemu: init at 1.3
 2020-03-31 15:17:33 +00:00
R. RyanTM
3017e6989f deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
R. RyanTM
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 (#83839) 2020-03-31 00:39:00 -04:00
R. RyanTM
bd245a755f stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
Ryan Mulligan
d8c21cb4bc
Merge pull request #83746 from r-ryantm/auto-update/marvin 
marvin: 20.6.0 -> 20.9.0
 2020-03-30 06:14:11 -07:00
R. RyanTM
1d349b8512 marvin: 20.6.0 -> 20.9.0 2020-03-30 04:02:45 +00:00
luc65r
8edd400bfb
rofi-calc: init at 1.6 (#83136) 
Also:
* maintainers: add albakhamj
* maintainers: add luc65r
* rofi: add plugins argument to wrapper

Co-authored-by: Maciej Krüger <mkg20001@gmail.com>
 2020-03-30 01:18:56 +02:00
Maximilian Bosch
9e7c54325e
stellarium: 0.19.3 -> 0.20.0 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.0
 2020-03-29 17:56:35 +02:00
Jörg Thalheim
d04396da8b
Merge pull request #82852 from Mic92/cross-build-rust-package 
[WIP] buildRustPackage: enable strictDeps
 2020-03-29 14:07:07 +01:00
Guanpeng Xu
d2702c915f mathematica: 12.0.0 -> 12.1.0 2020-03-29 14:38:33 +02:00
Jörg Thalheim
e841dce44a
rink: fix strict deps build 2020-03-29 12:37:25 +01:00
Constantine Glen Evans
59fbc7acba gwyddion: 2.48 -> 2.55 (and add options) 
Gwyddion has a large number of optional dependencies. In this update,
those dependencies have been added with options set mostly to true,
and an option (default false) for working Python 2.7 support in the
program and in Python has been added. I have also added myself as a
maintainer as no maintainer is currently set.
 2020-03-27 10:56:00 -07:00
Ryan Mulligan
c669d2991b
Merge pull request #83464 from r-ryantm/auto-update/last 
last: 1047 -> 1060
 2020-03-27 07:34:18 -07:00
R. RyanTM
bd3fbef804 last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
Ryan Mulligan
8c5f9d0200
Merge pull request #83390 from r-ryantm/auto-update/seaview 
seaview: 5.0 -> 5.0.2
 2020-03-26 03:10:56 -07:00
R. RyanTM
4a3ea14b5b seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
Austin Seipp
517fd073fc
xcircuit: 3.9.73 -> 3.10.12, maintain 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 17:46:15 -05:00
Austin Seipp
765b2fd866
mcy: 2020.03.16 -> 2020.03.21 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 06:46:01 -05:00
Austin Seipp
4808bef486
symbiyosys: 2020.02.11 -> 2020.03.24 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 06:46:01 -05:00
Vincent Laporte
618bca7054 alt-ergo: 2.3.0 → 2.3.1 2020-03-24 20:43:06 -04:00
Mario Rodas
b2df6d541d
lean: 3.7.0 -> 3.7.2 2020-03-22 04:20:00 -05:00
Mario Rodas
baeb670ce2
Merge pull request #82610 from r-ryantm/auto-update/eagle 
eagle: 9.5.2 -> 9.6.0
 2020-03-20 06:21:30 -05:00
Vincent Laporte
8dddd8a07f ocamlPackages.camlp5: 7.10 → 7.11 2020-03-19 18:04:14 -07:00
Claudio Bley
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer (#82925) 
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
 2020-03-19 13:05:54 +00:00
Austin Seipp
2ef42e07fd
mcy: 2020.02.05 -> 2020.03.16 
Now with working web UI dashboard -- but no working GUI (yet!)

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:40 -05:00
Austin Seipp
5cd4fd5bc5
symbiyosys: 2020.02.08 -> 2020.02.11 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:40 -05:00
Austin Seipp
9b43cf3a00
yosys: 2020.02.25 -> 2020.03.16 
- Bump `abc-verifier` (2020.03.05)
  - Install `yosys-abc` symlink for tool compatbility
  - Various `yosys` expression cleanups

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:37 -05:00
Dmitry Kalinkin
ebe5f10794
kicad: don't build versions with 3d on Hydra 
The hydraPlatforms have to be set on the kicad package itself, that can be
checked using:

  echo ":p { inherit kicad kicad-small kicad-unstable; }" | nix repl ./pkgs/top-level/release.nix

This commit disables build of all kicad variants that require downloading
packages3d, which currently fail on hydra with the "Output limit exceeded"
status. This leaves Hydra with only building the kicad-small, which will allow
us to cache the build of kicad-base as well as all libraries except of
packages3d.
 2020-03-16 19:45:04 -04:00
Dmitry Kalinkin
68db99ad97 snakemake: 5.9.1 -> 5.10.0 2020-03-14 15:58:24 -07:00
R. RyanTM
bafbfc5a06 eagle: 9.5.2 -> 9.6.0 2020-03-14 20:19:26 +00:00
zimbatm
001be890f7 folding@home: 6.02 -> 7.5.1 
The v7 series is very different.

This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
 2020-03-14 13:01:26 -07:00
Frederik Rietdijk
5175c35a99
Merge pull request #81611 from r-ryantm/auto-update/R 
R: 3.6.2 -> 3.6.3
 2020-03-14 14:29:05 +01:00
Josef Kemetmüller
3a8d05747b qgroundcontrol: Fix build 
This silences some warnings to not run into "Log limit exceeded" on
hydra.
 2020-03-14 03:18:39 +00:00
Mario Rodas
c935567de6 lean: 3.6.1 -> 3.7.0 2020-03-14 01:32:58 +00:00
wucke13
c24b9a57c4 getdp: 3.0.4 -> 3.3.0 2020-03-13 04:10:20 +00:00
R. RyanTM
a58d091d8d verilator: 4.028 -> 4.030 2020-03-12 20:57:34 -05:00
Maximilian Bosch
76821e6f43
geogebra: 5-0-573-0 -> 5-0-574-0 2020-03-12 18:12:57 +01:00
Timo Kaufmann
ba589e24c9 sage: patch for pari 2.11.3 2020-03-12 12:24:41 +01:00
Timo Kaufmann
c4ab541443 pari: backport bug fix 
https://trac.sagemath.org/ticket/29313#comment:4
 2020-03-12 12:24:35 +01:00
xaverdh
5ac085c3cc
wxmaxima: 18.02.0 -> 20.02.4 (#82323) 
The commit description is 18.02.0 -> 20.02.4, because in the last version bump (1c6a193b3e), the version string was changed, but the hash was not.

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2020-03-11 12:07:53 -04:00
Timo Kaufmann
1a6b1fb32a symmetrica: add timokau to maintainers 2020-03-10 18:10:28 +01:00
Timo Kaufmann
0c875c28c6 symmetrica: 2.0 -> 3.0.1 
This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:

https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061

Regarding the licensing change:

7cf91b3800
 2020-03-10 18:10:25 +01:00
Timo Kaufmann
e05e219b31
Merge pull request #82240 from timokau/sage-docutils-0.15-fix 
sage: fix test suite with docutils 0.15
 2020-03-10 15:25:22 +00:00
Timo Kaufmann
7133577405 sage: fix test suite with docutils 0.15 
The better way to fix this would be to backport the upstream sphinx
patch:

faedcc48cc

Unfortunately it doesn't apply cleanly and isn't worth the effort
of backporting. Let's hope we can switch to python3 sage and the recent
sphinx version that comes with it before this becomes a problem.
 2020-03-10 13:15:41 +01:00
Timo Kaufmann
63ed2bf3c3
Merge pull request #81950 from r-ryantm/auto-update/pari 
pari: 2.11.2 -> 2.11.3
 2020-03-09 17:31:14 +00:00
Michael Raskin
bbab73266d
Merge pull request #80719 from mucaho/feature/clingcon_init 
clingcon: init at 3.3.0
 2020-03-09 07:42:38 +00:00
mucaho
202c2a8eff clingcon: init at 3.3.0 2020-03-08 19:21:55 +01:00
Maximilian Bosch
84f862ed91
Merge pull request #81796 from JohnAZoidberg/satallax-gcc9 
satallax: Fix build with GCC9
 2020-03-08 16:12:40 +01:00
Gabriel Ebner
d7a68e9bce
Merge pull request #82028 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.7.0 -> 3.8.0
 2020-03-08 13:31:00 +01:00
Frederik Rietdijk
0eb0ddc4db Merge staging-next into master 2020-03-08 08:11:01 +01:00
R. RyanTM
e6f5bb8dc4 qalculate-gtk: 3.7.0 -> 3.8.0 2020-03-08 00:14:22 +00:00
Vincent Laporte
dcfccdfc33
acgtk: 1.5.0 → 1.5.1 (#81539) 
Co-authored-by: Jon <jonringer@users.noreply.github.com>
 2020-03-07 09:56:18 +01:00
R. RyanTM
6528554396 pari: 2.11.2 -> 2.11.3 2020-03-07 02:43:40 +00:00
Gabriel Ebner
8428f5bb4a elan: v0.8.0 tag was force-pushed by upstream 2020-03-06 15:35:37 +01:00
Gabriel Ebner
70e5428d66 elan: 0.7.5 -> 0.8.0 2020-03-06 14:28:36 +01:00
Joachim Breitner
2d2a5a9b63
js_of_ocaml: 3.4.0 -> 3.5.2 (#75766) 
drive-by contributions, as I was playing around with this (it has better
support for the `num` library, it seems.)

js_of_ocaml: 3.4.0 -> 3.5.2
ocamlPackages.js_of_ocaml-ppx_deriving_json: use ppxlib-0.12.0
ocamlPackages.eliom: 6.8.0 → 6.10.1
ocamlPackages.ocsigen-toolkit: 2.2.0 → 2.5.0
ocamlPackages.ocsigen-start: 2.7.0 → 2.16.1

Co-authored-by: Vincent Laporte <Vincent.Laporte@gmail.com>
 2020-03-06 07:42:04 +01:00
Frederik Rietdijk
188c3a4d03 Merge staging-next into staging 2020-03-06 07:09:30 +01:00
Mario Rodas
7597bdd59b
Merge pull request #81783 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.2 -> 4.5.4
 2020-03-05 08:31:38 -05:00
Mario Rodas
1196a5c7a7
Merge pull request #81722 from r-ryantm/auto-update/workcraft 
workcraft: 3.2.5 -> 3.2.6
 2020-03-05 07:42:25 -05:00
Daniel Schaefer
bc56175034 satallax: Fix build with GCC9 2020-03-05 05:16:49 +01:00
R. RyanTM
9974067129 gmsh: 4.5.2 -> 4.5.4 2020-03-05 00:20:08 +00:00
R. RyanTM
adcdd7b0a7 gromacs: 2020 -> 2020.1 2020-03-04 23:10:39 +00:00
Jan Tojnar
1a44e325d2
Merge branch 'staging-next' into staging 2020-03-04 21:24:05 +01:00
R. RyanTM
86e6080daf workcraft: 3.2.5 -> 3.2.6 2020-03-04 13:41:09 +00:00
Mario Rodas
5760e001ca
Merge pull request #81706 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.21.8 -> 2.22.0
 2020-03-04 07:26:05 -05:00
R. RyanTM
343ec80712 picard-tools: 2.21.8 -> 2.22.0 2020-03-04 09:58:40 +00:00
Gabriel Ebner
0d470dc5ea
Merge pull request #81692 from r-ryantm/auto-update/lean 
lean: 3.6.0 -> 3.6.1
 2020-03-04 10:32:38 +01:00
R. RyanTM
5b833c08ef lean: 3.6.0 -> 3.6.1 2020-03-04 06:26:01 +00:00
Aiken Cairncross
3db82f6fc3 python3Packages.monosat: Fix hash 
PR #81562 inadvertently broke these builds
 2020-03-03 11:02:23 -08:00
markuskowa
dbb9fab27f
Merge pull request #81604 from markuskowa/upd-octopus 
octopus: 9.1 -> 9.2
 2020-03-03 12:45:16 +01:00
R. RyanTM
faa5c3bde3 R: 3.6.2 -> 3.6.3 2020-03-03 11:34:22 +00:00
markuskowa
4822d61252
Merge pull request #80977 from r-ryantm/auto-update/quantum-espresso 
quantum-espresso: 6.4.1 -> 6.5
 2020-03-03 11:09:30 +01:00
Markus Kowalewski
eebd6fe75a
octopus: 9.1 -> 9.2 2020-03-03 10:54:23 +01:00
Aiken Cairncross
2148a154c6 python3Packages.monosat: Fix Python 3.8 build 2020-03-03 07:40:57 +01:00
Brenton Horne
b07eb54048 marvin: 20.4.0 -> 20.6.0 2020-03-02 21:50:25 +01:00
Jan Tojnar
f27031f48f
Merge pull request #81063 from NixOS/netpbm 
netpbm: 10.82.01 → 10.89.1
 2020-03-02 19:26:25 +01:00
scalavision
dbb4826457 truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
Jan Tojnar
9555834399
netpbm: split into multiple outputs 2020-03-01 15:13:03 +01:00
Frederik Rietdijk
21b808cd76 Merge staging-next into staging 2020-02-29 15:29:45 +01:00
Benjamin Hipple
ad30a30488 rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation 
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.

This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
 2020-02-28 18:54:23 -08:00
Matthieu Coudron
05b6836816 torchPackages, torch-repl: remove 
See https://github.com/NixOS/nixpkgs/issues/71888
and https://github.com/NixOS/nixpkgs/issues/56398

To sump up, development has moved on to other technologies than lua:
https://github.com/torch/torch7#development-status
and the current packages are broken anyway.
 2020-02-28 20:56:42 +01:00
Austin Seipp
7e66ce29bf
mcy: init at 2020.02.05 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-02-27 21:52:15 -06:00
Austin Seipp
3d8efecda1
symbiyosys: fix calls to external programs 
48085826f broke symbiyosys when it needed to call `yosys-abc`: when
`ABCEXTERNAL` is set in the Makefile, then `yosys-abc` is not built.

But in general `sby` was just calling programs out of the ambient
environment. Fix that for most programs it can invoke: it now has a
direct dependency on boolector, aiger, abc, yosys, etc.

This also does some other minor clean up.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-02-27 21:52:15 -06:00
Mario Rodas
79f057e2eb
lean: 3.5.1 -> 3.6.0 2020-02-26 18:00:00 -05:00
Dmitry Kalinkin
b9ee6cd85c
Merge pull request #80640 from smaret/gildas-20200201a 
gildas: 20200101_a -> 20200201_a
 2020-02-25 10:26:18 -05:00
R. RyanTM
56d58ecb24 quantum-espresso: 6.4.1 -> 6.5 2020-02-24 19:40:14 +00:00
R. RyanTM
4080e7976e gtkwave: 3.3.103 -> 3.3.104 2020-02-24 11:43:54 -06:00
Linus Heckemann
0cc83f884a
Merge pull request #80292 from bcdarwin/mrtrix 
mrtrix: init at 3.0_RC3_latest
 2020-02-24 13:52:38 +01:00
Timo Kaufmann
f4dbf4402b
Merge pull request #80759 from Thra11/fix-r 
Fix R
 2020-02-23 23:48:21 +00:00
Tom Hall
ae9e09a2e1 R: fix build on aarch64 by removing a failing test 
I believe this test is currently incorrect on aarch64 and expects a
warning about loss of precision with much smaller numbers than the
platform's long doubles can handle.
 2020-02-22 13:17:40 +00:00
Edward Tjörnhammar
9b6faedb18
shogun: 6.0.0 -> 6.1.4 
Also migrate to opencv3 to address #72739, the PR didn't build for me.
Disable testing and ccache since they were broken.

Co-authored-by: Robert Scott <code@humanleg.org.uk>
 2020-02-21 11:05:09 +01:00
Sébastien Maret
7667207f3d
gildas: 20200101_a -> 20200201_a 
- Upgrade gildas to the latest version

 - Remove a patch that has been included upstream

 - Re-enable parallel building (fixed upstream)
 2020-02-20 15:28:57 +01:00
Gabriel Ebner
f098b0dd2c
Merge pull request #80576 from bhipple/u/rust-cargo-elan 
elan: upgrade cargo fetcher and cargoSha256
 2020-02-20 09:53:49 +01:00
Maximilian Bosch
7bdc103ac8
geogebra: 5-0-570-0 -> 5-0-573-0 2020-02-20 03:09:06 +01:00
Benjamin Hipple
ed85c9981a elan: upgrade cargo fetcher and cargoSha256 
Infra upgrade as part of #79975; ran `nixpkgs-review wip` successfully.
 2020-02-19 18:17:27 -05:00
Tom Hall
4e5aeca90b R: Enable java support on all platforms 2020-02-19 22:57:41 +00:00
Ben Darwin
9a2cd20478 mrtrix: init at 3.0_RC3_latest 
This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.

Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
 2020-02-16 22:25:25 -05:00
Daniel Schaefer
1e613230d2
Merge pull request #80122 from r-ryantm/auto-update/kallisto 
kallisto: 0.46.1 -> 0.46.2
 2020-02-15 22:41:15 +01:00
R. RyanTM
4c6c40d96a kallisto: 0.46.1 -> 0.46.2 
Co-authored-by: Daniel Schaefer <git@danielschaefer.me>
 2020-02-15 22:39:58 +01:00
Junyoung Clare Jang
b71c03e483
lean: 3.4.2 -> 3.5.1 
3.4.2 is not compilable with GCC >= 9.1
 2020-02-15 02:29:12 -05:00
R. RyanTM
d54a58a2cd verilator: 4.026 -> 4.028 2020-02-14 12:13:04 -06:00
Benjamin Hipple
eb11feaa0b treewide: change fetchCargoTarball default to opt-out 
Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.

This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.

See #79975 for details.
 2020-02-13 22:41:37 -08:00
Dmitry Kalinkin
5f2a3bef33
Merge pull request #79778 from jbedo/delly 
delly: 0.8.1 -> 0.8.2
 2020-02-11 03:54:02 -05:00
Justin Bedo
a8fe9e7aff
delly: 0.8.1 -> 0.8.2 
Backported patch required for htslib 1.10.2
 2020-02-11 19:21:59 +11:00
Ryan Mulligan
b99e12f4fe
Merge pull request #79534 from r-ryantm/auto-update/last 
last: 1045 -> 1047
 2020-02-10 18:10:08 -08:00
Brenton Horne
567be48707 marvin: 20.3.0 -> 20.4.0 2020-02-10 19:55:13 +01:00
Evils
d3a9e634bf kicad-unstable: update update.sh && update 
use /tmp instead of XDG_RUNTIME_DIR
  which is /run/user/1000, which defaults to 10% of RAM
  and kicad-packages3d needs ~6gb
 2020-02-10 19:54:38 +01:00
Evils
a9942b0226 kicad: simplify component names 2020-02-10 19:54:38 +01:00
Ben Darwin
39f0e3b32b minc_tools: enable building conversion tools 2020-02-10 19:53:25 +01:00
Ben Darwin
bcad453bcf minc_tools: 2017-09-11 -> unstable-2019-12-04 2020-02-10 19:53:25 +01:00
luc65r
94c60990fc cemu: init at 1.3 2020-02-10 19:26:25 +01:00
R. RyanTM
e988c072be clp: 1.17.3 -> 1.17.5 2020-02-10 13:24:22 +01:00
R. RyanTM
1d4fd7f5f2 verifast: 18.02 -> 19.12 2020-02-09 14:29:31 -06:00
R. RyanTM
3a1098e3e2 pcb: 4.2.1 -> 4.2.2 2020-02-09 16:49:13 +01:00
Frederik Rietdijk
3846896084 Merge pull request #79293 from NixOS/staging-next 
Staging next (with glibc 2.30)
 2020-02-09 16:40:16 +01:00
Ryan Mulligan
c9cf351871 Merge pull request #79479 from r-ryantm/auto-update/workcraft 
workcraft: 3.1.9 -> 3.2.5
 2020-02-09 06:37:47 -08:00
Frederik Rietdijk
531a48ebdb Merge master into staging-next 2020-02-09 11:00:29 +01:00
Jannik Vierling
6ea5cd21ab iprover: 2018_Jul_24_11h -> 3.1 2020-02-09 09:38:57 +01:00
Frederik Rietdijk
03755ed59a Merge master into staging-next 2020-02-09 09:17:51 +01:00
Luz
0522b3347e librepcb: 0.1.2 -> 0.1.3 (#74786) 2020-02-09 01:07:31 -05:00
Dmitry Kalinkin
1872e69450
Merge pull request #79301 from Abdillah/patch-2 
librepcb: Fix platform plugin xcb not found
 2020-02-09 00:28:49 -05:00
Emily
a14a32fd75 symbiyosys: 2019.10.11 -> 2020.02.08 2020-02-08 23:00:07 -06:00
Ryan Mulligan
537f07555f Merge pull request #79557 from r-ryantm/auto-update/marvin 
marvin: 19.27.0 -> 20.3.0
 2020-02-08 12:42:18 -08:00
R. RyanTM
20f22f681f marvin: 19.27.0 -> 20.3.0 2020-02-08 19:34:35 +00:00
markuskowa
8261fc4980
Merge pull request #79511 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.1 -> 4.5.2
 2020-02-08 14:21:27 +01:00
R. RyanTM
dae266aa66 last: 1045 -> 1047 2020-02-08 13:04:53 +00:00
R. RyanTM
7c58b6437b gmsh: 4.5.1 -> 4.5.2 2020-02-08 07:25:27 +00:00
Ryan Mulligan
555ca166ec
Merge pull request #79467 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.21.6 -> 2.21.8
 2020-02-07 18:10:16 -08:00
R. RyanTM
5bf0de57ad workcraft: 3.1.9 -> 3.2.5 2020-02-07 21:09:41 +00:00
Frederik Rietdijk
30f0909e3a Merge master into staging-next 2020-02-07 19:27:52 +01:00
R. RyanTM
d5404eebe9 picard-tools: 2.21.6 -> 2.21.8 2020-02-07 17:20:58 +00:00
R. RyanTM
78d6e74427 eagle: 9.5.1 -> 9.5.2 2020-02-06 20:17:53 +01:00
R. RyanTM
ce5b0406db labelImg: 1.6.0 -> 1.8.1 2020-02-06 20:11:53 +01:00
Hernawan Faïz Abdillah
2d4ee40176
librepcb: Fix platform plugin xcb not found 2020-02-06 08:44:16 +07:00
Frederik Rietdijk
292fd97f67 Merge staging-next into staging 2020-02-05 20:48:28 +01:00
Frederik Rietdijk
419bc0a4cd Revert "Revert "Merge master into staging-next"" 
In 87a19e9048 I merged staging-next into master using the GitHub gui as intended.
In ac241fb7a5 I merged master into staging-next for the next staging cycle, however, I accidentally pushed it to master.
Thinking this may cause trouble, I reverted it in 0be87c7979. This was however wrong, as it "removed" master.

This reverts commit 0be87c7979.
 2020-02-05 19:41:25 +01:00
Frederik Rietdijk
0be87c7979 Revert "Merge master into staging-next" 
I merged master into staging-next but accidentally pushed it to master.
This should get us back to 87a19e9048.

This reverts commit ac241fb7a5, reversing
changes made to 76a439239e.
 2020-02-05 19:18:35 +01:00
Ryan Mulligan
67143ec938
Merge pull request #79231 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.13.1 -> 3.14.0
 2020-02-05 06:54:45 -08:00
Vladimír Čunát
48a997cd76
Merge #66528: glibc: 2.27 -> 2.30 (into staging) 
Includes update of stdenv bootstap tools (for three main platforms)
and many package fixes with new glibc.
 2020-02-05 13:41:09 +01:00
R. RyanTM
3c54ae5679 SPAdes: 3.13.1 -> 3.14.0 2020-02-04 16:40:50 +00:00
Millian Poquet
150f4a967c simgrid: 3.24 -> 3.25 2020-02-03 10:37:03 -08:00
Maximilian Bosch
ea8ae88f04
Merge branch 'staging' into glibc230 2020-02-01 17:42:03 +01:00
Florian Klink
570afbcb5b abc-verifier: passthru rev 
Some consumers of abc-verifier require certain abc versions.
For that reason, expose the exact rev via a passtrhru.
 2020-02-01 12:49:45 +01:00
Florian Klink
351f47da57 abc-verifier: 2018-07-08 -> 2020-01-11 2020-02-01 12:49:45 +01:00
markuskowa
d9209250e5
Merge pull request #78981 from r-ryantm/auto-update/jmol 
jmol: 14.30.1 -> 14.30.2
 2020-02-01 11:07:38 +01:00
Mario Rodas
c8af1bef6e
Merge pull request #78833 from r-ryantm/auto-update/snakemake 
snakemake: 5.8.1 -> 5.9.1
 2020-02-01 04:11:11 -05:00