Eelco Dolstra
ab3eeabfed
Rename buildNativeInputs -> nativeBuildInputs
...
Likewise for propagatedBuildNativeInputs, etc. "buildNativeInputs"
sounds like an imperative rather than a noun phrase.
2012-12-28 19:20:09 +01:00
Eelco Dolstra
5553546c21
Remove a bunch of unreferenced files
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Plus a small number of obsolete packages (like old versions of qemu).
2012-11-29 13:43:37 +01:00
Ludovic Courtès
bf08f68ccb
blas: really fix installation on FreeBSD
2012-10-18 17:35:00 +02:00
Ludovic Courtès
dc3fafe06d
blas: `install -d' on FreeBSD
2012-10-18 10:21:24 +02:00
Michael Raskin
901574fe8a
Julia language: update to a fresh version
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Update julia and some of its dependencies
Split PCRE because a lot of packages depend on it and I am not sure we
want to test them in a hurry (and Julia specifies exact version).
2012-08-02 17:48:36 +04:00
Lluís Batlle i Rossell
8f50680a05
I hope now I guess fine how to tell ATLAS not to accept any simd for i686.
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svn path=/nixpkgs/trunk/; revision=33793
2012-04-15 12:44:48 +00:00
Lluís Batlle i Rossell
2e753bc4cf
Typo again in atlas.
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svn path=/nixpkgs/trunk/; revision=33791
2012-04-15 08:11:12 +00:00
Lluís Batlle i Rossell
023cd3b7bd
Oh, I removed -fPIC in my last atlas commit. I didn't mean to.
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svn path=/nixpkgs/trunk/; revision=33790
2012-04-15 07:58:58 +00:00
Lluís Batlle i Rossell
30d7a7fbe1
I think we better disable SIMD for i686. Or it can detect whatever the machine has.
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svn path=/nixpkgs/trunk/; revision=33789
2012-04-14 22:00:12 +00:00
Lluís Batlle i Rossell
60ecc500f9
Trying to fix atlas i686. I set Pentium II and having sse/sse2 at the same time for i686...
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I think Pentium II does not have sse.
svn path=/nixpkgs/trunk/; revision=33787
2012-04-14 18:58:30 +00:00
Lluís Batlle i Rossell
4250dd8104
I made atlas build for fixed architectures.
...
We saw a crash in many computers, in the octave check phase, where octave crashed.
It was due to atlas being built for AMD Family 10h, which has a special SSE
trick that others computer don't have.
For x86_64, atlas is for K7. And for i686, PII.
svn path=/nixpkgs/trunk/; revision=33780
2012-04-13 18:46:24 +00:00
Michael Raskin
3c69bcf348
Support shared library build; tests do not currently work for shared build.
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svn path=/nixpkgs/trunk/; revision=33613
2012-04-05 12:18:56 +00:00
Michael Raskin
2f97078c96
Support shared library build
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svn path=/nixpkgs/trunk/; revision=33612
2012-04-05 12:18:08 +00:00
Peter Simons
e321903ff1
Atlas aborts the build some kind of CPU frequency scaling is detected on the
...
build machine because that feature offsets the performance timings. We ignore
that check, however, because with binaries being pre-built on Hydra those
timings aren't accurate for the local machine in the first place. The build log
might show something such as the following:
| It appears you have cpu throttling enabled, which makes timings
| unreliable and an ATLAS install nonsensical. Aborting.
| See ATLAS/INSTALL.txt for further information
| Ignoring CPU throttling by user override!
svn path=/nixpkgs/trunk/; revision=32506
2012-02-23 11:33:26 +00:00
Lluís Batlle i Rossell
4d4d324776
Making liblapack do the check phase
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svn path=/nixpkgs/trunk/; revision=32494
2012-02-22 22:41:27 +00:00
Lluís Batlle i Rossell
8f7485d784
Making atlas do the check phase.
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svn path=/nixpkgs/trunk/; revision=32493
2012-02-22 22:40:35 +00:00
Lluís Batlle i Rossell
e4c4ab35e5
I think I fixed atlas for i686. It wants '-b 32'. Why, I don't know.
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svn path=/nixpkgs/trunk/; revision=32471
2012-02-22 11:37:10 +00:00
Lluís Batlle i Rossell
5e2de19cc1
Fixing octave, so plot(1) works.
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Linking octave with clapack did not work.
I updated lapack, and additionally I build it with atlas, instead of blas. That should give
better performance. I don't know if atlas builds everywhere though.
On the other hand, maybe some programs linking with liblapack will fail. We'll have to check
the hydra reports.
I plan to remove clapack; liblapack provides a C interface too.
svn path=/nixpkgs/trunk/; revision=32464
2012-02-21 21:43:44 +00:00
Lluís Batlle i Rossell
2847a37fa9
Updating atlas to 3.9.67, the latest development version
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svn path=/nixpkgs/trunk/; revision=32458
2012-02-21 14:49:36 +00:00
Eelco Dolstra
6609710409
* Get rid of many instances of "args: with args;", and other coding
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guidelines violations.
* Updated libsamplerate to 0.1.7.
svn path=/nixpkgs/trunk/; revision=22782
2010-07-28 11:55:54 +00:00
David Guibert
3563194637
compile static libraries for blas and lapack
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svn path=/nixpkgs/trunk/; revision=22549
2010-07-09 13:15:56 +00:00
Eelco Dolstra
0a882d423b
* Fix stdenv evaluation - use ${stdenv.shell} instead of
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${stdenv.bash}/bin/bash.
svn path=/nixpkgs/trunk/; revision=19723
2010-01-29 00:17:59 +00:00
Peter Simons
30bbff2b68
pkgs/development/libraries/science/math/liblapack: fixed license tag
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Thanks to Ludovic Courtès for pointing that out.
svn path=/nixpkgs/trunk/; revision=19687
2010-01-26 19:28:09 +00:00
Peter Simons
6a61d675bb
pkgs/development/libraries/science/math/blas: set license to "public domain"
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It's not entirely clear whether BLAS is in the public domain, but according to
<87636orixx.fsf@gnu.org> Debian did classify it that way, and the license text
sure feels like the authors intend the package to be in the public domain. So
here we are.
svn path=/nixpkgs/trunk/; revision=19686
2010-01-26 19:28:03 +00:00
Peter Simons
8cb6ced793
pkgs/development/libraries/science/math/liblapack: fixed build and updated to version 3.2.1
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svn path=/nixpkgs/trunk/; revision=19672
2010-01-26 14:53:13 +00:00
Peter Simons
a5030f06df
pkgs/development/libraries/science/math/blas: added BLAS version 20070405
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svn path=/nixpkgs/trunk/; revision=19671
2010-01-26 14:53:08 +00:00
Marc Weber
94ba737704
fix atlas by Tobias Neumann
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svn path=/nixpkgs/trunk/; revision=15685
2009-05-21 17:39:17 +00:00
Lluís Batlle i Rossell
645279d544
Updating atlas
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svn path=/nixpkgs/trunk/; revision=14957
2009-04-08 22:08:05 +00:00
Marc Weber
d97a7e08bc
make atlas build again (tested on amd64)
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svn path=/nixpkgs/trunk/; revision=13560
2008-12-02 22:55:33 +00:00
Pjotr Prins
3ce5cba9c7
Added pkgMaintainer info to these 'biology' section packages.
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svn path=/nixpkgs/trunk/; revision=12987
2008-10-07 15:12:06 +00:00
Pjotr Prins
b3aa5d6bfc
Added meta.pkgMaintainer to biology packages - a claim to fame, or
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you know who to blame!
svn path=/nixpkgs/trunk/; revision=12986
2008-10-07 15:12:01 +00:00
Pjotr Prins
2391d84867
Two math packages
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svn path=/nixpkgs/trunk/; revision=12955
2008-10-05 09:01:59 +00:00
Pjotr Prins
73d2e4f49d
- Some Ruby interpreter bumped version
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- Kernel headers 2.6.18 added (XEN virtual images)
- unifdef package added for kernel headers 2.6.18
- Python Zope and 4suite added
- Trying bioconductor packages with R-lang (still failing)
- Bumped gmp version
- Added rq cluster runner - still requires extra gems (installs, but does not run)
svn path=/nixpkgs/trunk/; revision=12766
2008-08-29 13:53:28 +00:00
Pjotr Prins
07595b0397
Introduced biolib package
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svn path=/nixpkgs/trunk/; revision=12535
2008-08-07 15:01:21 +00:00
Pjotr Prins
289da88ccc
Moved NCBI-tools to applications
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svn path=/nixpkgs/trunk/; revision=12004
2008-06-07 06:34:02 +00:00
Pjotr Prins
d78d018ad8
Added ncbi-tools
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svn path=/nixpkgs/trunk/; revision=12003
2008-06-06 19:42:00 +00:00