Frederik Rietdijk
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7aa2b0215b
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Merge master into staging-next
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2020-01-03 10:25:14 +01:00 |
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Ryan Mulligan
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ec29bb50bf
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Merge pull request #76208 from r-ryantm/auto-update/bcftools
bcftools: 1.9 -> 1.10.2
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2020-01-02 16:42:27 -08:00 |
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Frederik Rietdijk
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6d059becd3
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Merge gcc-9 into staging (#68029)
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2019-12-30 16:38:38 +01:00 |
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Merijn Broeren
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133103d709
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treewide: replace make/build/configure/patchFlags with nix lists
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2019-12-30 12:58:11 +01:00 |
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Franz Pletz
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a88fc6be6d
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strelka: fix build w/ gcc9
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2019-12-30 03:18:19 +01:00 |
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Frederik Rietdijk
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eda01862c4
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Merge pull request #75900 from jbedo/tebreak
Tebreak, minia, last, bx-python, python-lzo
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2019-12-29 10:24:31 +01:00 |
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Justin Bedo
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11460d4cac
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tebreak: init at 1.0
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2019-12-29 17:16:10 +11:00 |
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Franz Pletz
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77b6c3cd06
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Merge remote-tracking branch 'origin/master' into gcc-9
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2019-12-26 14:17:36 +01:00 |
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R. RyanTM
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c905a6da5a
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bcftools: 1.9 -> 1.10.2
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2019-12-22 20:00:29 -08:00 |
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Justin Bedo
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2191912274
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minia: init at 3.2.1
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2019-12-20 11:27:04 +11:00 |
|
Justin Bedo
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6741cff527
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last: init at 1042
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2019-12-20 11:27:02 +11:00 |
|
Justin Bedo
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28a057a56b
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bedtools: 2.29.1 -> 2.29.2
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2019-12-18 10:39:25 +11:00 |
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Mario Rodas
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5e5ce79db4
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Merge pull request #75807 from jbedo/strelka
strelka: fix broken build
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2019-12-16 23:52:35 -05:00 |
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Justin Bedo
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c3f09c33eb
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strelka: fix broken build
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2019-12-17 11:20:32 +11:00 |
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Justin Bedo
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50fbca4bfc
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bedtools: fix clang builds
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2019-12-11 09:27:57 +11:00 |
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Justin Bedo
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592d288aa2
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bedtools: 2.29.0 -> 2.29.1
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2019-12-10 13:24:27 +11:00 |
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Renato Alves
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e18fb092f1
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kssd: init at 1.0
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2019-12-08 16:48:59 +01:00 |
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scalavision
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3dfabd6eff
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svaba: init at 1.1.0
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2019-12-08 14:51:05 +01:00 |
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Mario Rodas
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835705d11b
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Merge pull request #75095 from tbenst/bftools
bftools: 5.9.2 -> 6.3.0
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2019-12-07 03:06:00 -05:00 |
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Tyler Benster
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2700559bdc
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bftools: 5.9.2 -> 6.3.0
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2019-12-06 02:11:00 -08:00 |
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R. RyanTM
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605e88517b
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paml: 4.9i -> 4.9j
|
2019-12-01 18:43:58 +01:00 |
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R. RyanTM
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da09e1e772
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kallisto: 0.46.0 -> 0.46.1 (#74430)
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2019-11-30 21:12:54 +01:00 |
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R. RyanTM
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98e0ead3ba
|
picard-tools: 2.21.1 -> 2.21.3 (#74528)
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2019-11-30 16:24:44 +01:00 |
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R. RyanTM
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6563dd3351
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hmmer: 3.2.1 -> 3.3
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2019-11-27 18:40:23 -08:00 |
|
Kai Wohlfahrt
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6b2504f9f2
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freebayes: 2017-08-23 -> 1.3.1 (2019-06-03)
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2019-11-20 09:10:31 -08:00 |
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Ben Darwin
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736860d34b
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nifticlib and niftseg: change platform from linux to unix since these build on OSX
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2019-11-14 21:25:10 -05:00 |
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Franz Pletz
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8dca8b9ccb
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Merge remote-tracking branch 'origin/master' into gcc-9
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2019-11-05 01:07:22 +01:00 |
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scalavision
|
d9b40f6397
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deeptools: init at 3.3.1
|
2019-11-04 02:42:36 -08:00 |
|
Franz Pletz
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6b10b78872
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Merge remote-tracking branch 'origin/master' into gcc-9
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2019-11-03 14:44:12 +01:00 |
|
Franz Pletz
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8e63a6cd13
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niftyreg: fix build with gcc9
|
2019-11-03 14:43:37 +01:00 |
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R. RyanTM
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28b0a6a9e0
|
star: 2.7.2b -> 2.7.3a
|
2019-11-03 10:23:05 +01:00 |
|
Franz Pletz
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e39773fe5b
|
megahit: 1.1.4 -> 1.2.9
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2019-11-02 15:53:57 +01:00 |
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Ben Darwin
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ddc2955ad9
|
EZminc: 2017-08-29 -> 2019-07-25; mark unbroken
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2019-10-26 09:55:30 -07:00 |
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scalavision
|
535a7006ea
|
truvari: init at 1.3.2 (#70877)
pythonPackages.pyvcf: init at 0.6.8
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2019-10-24 17:06:42 -04:00 |
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R. RyanTM
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b8acb48b24
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picard-tools: 2.20.8 -> 2.21.1 (#71748)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
|
2019-10-23 09:34:40 +02:00 |
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R. RyanTM
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a9551de99a
|
dcm2niix: 1.0.20190410 -> 1.0.20190902
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/dcm2niix/versions
|
2019-10-22 16:31:19 -07:00 |
|
Renaud
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e6f99fa3b1
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Merge pull request #69961 from r-ryantm/auto-update/star
star: 2.7.1a -> 2.7.2b
|
2019-10-13 17:10:23 +02:00 |
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scalavision
|
3d860972ee
|
delly: init at 0.8.1 (#70871)
|
2019-10-10 22:08:45 -04:00 |
|
Linus Heckemann
|
5aa4b19946
|
treewide: mark some broken packages as broken
Refs:
e6754980264fe927320d5ff2dbd24ca4fac9a160
1e9cc5b9844ef603fe160e9f671178f96200774f
793a2fe1e8bb886ca2096c5904e1193dc3268b6d
c19cf65261639f749012454932a532aa7c681e4b
f6544d618f30fae0bc4798c4387a8c7c9c047a7c
|
2019-10-08 17:14:26 +02:00 |
|
Bruno Bzeznik
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1ba3f3f00f
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SPAdes: init at 3.13.1 (#63082)
|
2019-10-03 09:18:48 +00:00 |
|
Ryan Mulligan
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8519cd1aa0
|
Merge pull request #69735 from r-ryantm/auto-update/picard-tools
picard-tools: 2.20.5 -> 2.20.8
|
2019-09-29 15:44:33 -07:00 |
|
R. RyanTM
|
de95a92384
|
star: 2.7.1a -> 2.7.2b
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
|
2019-09-28 21:09:40 -07:00 |
|
R. RyanTM
|
8c397c2bc2
|
picard-tools: 2.20.5 -> 2.20.8
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
|
2019-09-27 18:25:22 -07:00 |
|
Aaron Andersen
|
af5176b430
|
Merge pull request #63117 from bzizou/macse
macse: init at 2.03
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2019-09-27 17:26:07 -04:00 |
|
Bruno Bzeznik
|
e4108becbe
|
macse: init at 2.03
|
2019-09-24 08:24:07 +02:00 |
|
Miguel Madrid Mencía
|
148c82e07e
|
maintainer: mimadrid: update github username and personal data
|
2019-09-14 12:15:46 +02:00 |
|
Linus Heckemann
|
f6182da2c6
|
ants: use itk 4.x
|
2019-09-13 11:54:21 +02:00 |
|
volth
|
7b8fb5c06c
|
treewide: remove redundant quotes
|
2019-09-08 23:38:31 +00:00 |
|
Frederik Rietdijk
|
5f4734b1dd
|
Merge remote-tracking branch 'upstream/gcc-8' into staging-next
Earlier the gcc8 branch was merged instead of the gcc-8 branch (note the dash)...
|
2019-09-08 20:44:26 +02:00 |
|
Frederik Rietdijk
|
66bc7fc1b3
|
Merge master into staging-next
|
2019-09-06 22:46:05 +02:00 |
|