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675 Commits

Author SHA1 Message Date
Sandro
78a06ae6be
Merge pull request #104305 from r-ryantm/auto-update/petsc 
petsc: 3.14.0 -> 3.14.1
 2020-11-23 14:07:11 +01:00
R. RyanTM
69dfe8d67a openlibm: 0.7.2 -> 0.7.3 2020-11-22 06:23:37 +00:00
freezeboy
ed7a64c4ee qcsxcad: migrate to Qt511 + additional cleanup 
* Split into multiple outputs
 * Rewrite the derivation without stdenv
 2020-11-20 22:24:18 +01:00
Daniël de Kok
af6dbe82b4
Merge pull request #104265 from danieldk/sync-cudnn-with-toolkit 
cudnn_cudatoolkit_10: 10.1 -> 10.2
 2020-11-20 13:34:18 +01:00
R. RyanTM
a1d06b98ce petsc: 3.14.0 -> 3.14.1 2020-11-19 19:49:01 +00:00
Daniël de Kok
1bdeea7fc8 cudnn_cudatoolkit_10: 10.1 -> 10.2 
cudatoolkit_10 is currently CUDA 10.2, whereas cudnn_cudatoolkit_10
was using CuDNN with CUDA 10.1. This change rectifies that
discrepancy.
 2020-11-19 10:19:54 +01:00
Timo Kaufmann
ff8338343b maintainers: create sage team 
Maintaining all the packages whose updates might break some aspect of
sage.

For reference:
https://github.com/NixOS/nixpkgs/pull/103810#issuecomment-727536510
 2020-11-18 21:27:37 +01:00
Daniël de Kok
da115b4c56
Merge pull request #103120 from danieldk/libtorch-bin-cmake-fix-lib-paths 
libtorch-bin: fix CMake library paths for split outputs
 2020-11-10 12:10:38 +01:00
Frederik Rietdijk
20f001c01e Merge master into staging-next 2020-11-09 14:33:52 +01:00
Daniël de Kok
2802a021e3 libtorch-bin: modify passthru test to capture CMake misconfiguration 2020-11-09 07:49:54 +01:00
Daniël de Kok
e8721af065 libtorch-bin: fix CMake library paths for split outputs 
The libtorch CMake files are in the `dev` output and used relative
paths to locate the shared libraries. This fails, because the
libraries are in the `out` output. This change patches the CMake files
to use library paths from `out`.

See #102146.
 2020-11-09 07:49:54 +01:00
Daniël de Kok
d36077239c
Merge pull request #103078 from danieldk/cleanup-libtorch-bin-test 
libtorch-bin: cleanup passthru test
 2020-11-09 07:49:03 +01:00
Daniël de Kok
a71f07694c libtorch-bin: cleanup passthru test 
- Make passthru.tests an attrset.
- Remove CMake VERBOSE option.
- Remove spurious `cat CMakeLists.txt`.
- Run the test as well.
- Actually test some functionality.
 2020-11-07 13:50:23 +01:00
Frederik Rietdijk
99fb79ae84 Merge master into staging-next 2020-11-06 12:51:56 +01:00
Daniël de Kok
b5d27eb87c mkl: Add a small test program 
The MKL pkg-config files often change and are then incorrect for our
paths. pkg-config validation finds some issues, but not incorrect
paths. So, add a small test program to test whether the generated
pkg-config files can actually be used to build a functioning
binary. Hopefully this catches future regressions.
 2020-11-06 12:18:56 +01:00
Daniël de Kok
702b626570 mkl: Fix pkg-config file 
There was a spurious `intel64` in some library paths.
 2020-11-06 09:55:12 +01:00
R. RyanTM
4d507f9002 petsc: 3.13.4 -> 3.14.0 2020-11-04 07:59:18 +00:00
TredwellGit
d1d536cc07 openblas: 0.3.10 -> 0.3.12 
https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11
https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12
 2020-11-01 10:58:02 +01:00
Renato Alves
019fa5f608
htslib: 1.10.2 -> 1.11 (#100812) 2020-10-29 11:18:29 +01:00
eyjhb
4ce6364e29 ns-3: 3.30 -> 3.32 2020-10-28 20:22:15 +01:00
Daniël de Kok
442ba6668f libtorch-bin: 1.6.0 -> 1.7.0 
Changelog:

https://github.com/pytorch/pytorch/releases/tag/v1.7.0
 2020-10-28 13:23:35 +01:00
Ben Siraphob
db74029e3e treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
R. RyanTM
1007e8140a openlibm: 0.7.1 -> 0.7.2 2020-10-26 00:47:50 +00:00
Robert Scott
c873f13eac
Merge pull request #101031 from r-burns/spooles 
spooles: fix build on darwin
 2020-10-19 19:07:03 +01:00
Ryan Burns
c04219a9d5 spooles: fix build on darwin 2020-10-18 13:32:45 -07:00
Timo Kaufmann
e9f8c385c0
Merge pull request #100870 from r-ryantm/auto-update/brial 
brial: 1.2.8 -> 1.2.10
 2020-10-18 10:37:47 +02:00
R. RyanTM
57738e9b6f brial: 1.2.8 -> 1.2.10 2020-10-17 19:37:17 +00:00
Ben Darwin
e20652da9b elastix: 5.0.0 -> 5.0.1; unbreak OS X build 2020-10-17 11:36:31 -07:00
Ben Siraphob
683a87dbeb treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
Vladimír Čunát
338b25697c
Merge branch 'master' into staging-next 
Quite many rebuilds from master:
> Estimating rebuild amount by counting changed Hydra jobs.
>    3926 x86_64-darwin
>    4645 x86_64-linux
 2020-10-10 11:32:10 +02:00
Frederik Rietdijk
ec28e32c9e Merge master into staging-next 2020-10-08 21:47:26 +02:00
Lassulus
f849b13978
Merge pull request #98571 from bcdarwin/gifticlib 
gifticlib: init at unstable-2020-07-07
 2020-10-08 21:48:31 +02:00
Ben Darwin
44d854af30 bicgl: update LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:19 -04:00
Ben Darwin
85946918ac oobicpl: update LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:17 -04:00
Ben Darwin
2c33e9d1a4 bicpl: fix LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:15 -04:00
Ben Darwin
da69e470f2 EBTKS: update LIBMINC_DIR due to libminc update 2020-10-06 15:31:15 -04:00
Frederik Rietdijk
692d219a93 Merge staging-next into staging 2020-10-06 10:25:58 +02:00
Jonathan Ringer
7902256cfd openblas: enable multiple outputs 2020-10-05 16:15:14 -07:00
Timo Kaufmann
27f084d817
Merge pull request #98779 from r-ryantm/auto-update/libbraiding 
libbraiding: 1.0 -> 1.1
 2020-09-28 11:11:06 +02:00
R. RyanTM
f175cb4478 libbraiding: 1.0 -> 1.1 2020-09-25 18:52:32 +00:00
R. RyanTM
ced2c4a0ec cliquer: 1.21 -> 1.22 2020-09-25 02:29:32 +00:00
Ben Darwin
8a3c9812cc gifticlib: init at unstable-2020-07-07 2020-09-23 12:07:37 -04:00
Matthew Bauer
c85fc341b0 pytorch: update to use passthru's for checks 
This makes the checks a little easier to understand - we can just
check it in the passthru. Also increase major check for cuda 11.
 2020-09-10 14:23:15 -05:00
Ben Darwin
98512f3eaa nifticlib: 2.0.0 -> 3.0.1 2020-09-09 15:26:04 -04:00
Daniël de Kok
466522c919
Merge pull request #97137 from danieldk/blis-0.7.0 
blis: init at 0.7.0
 2020-09-08 14:55:39 +02:00
Benjamin Hipple
3c4335723c
Merge pull request #97019 from danieldk/mkl-2020.2 
mkl: 2020.2.254 -> 2020.3.279
 2020-09-07 13:28:27 -04:00
Jan Tojnar
87ec0fb5f3
Merge pull request #96982 from graham33/fix/96981_suitesparse_dylib_names 
suitesparse: rename fixDarwinDylibNames override
 2020-09-07 16:51:07 +02:00
Graham Bennett
e10228defa suitesparse: remove custom fixDarwinDylibNames postInstall 
This shadows the regular fixDarwinDylibNames function, which is a
nativeBuildInput, and prevents it from converting some relative paths to
absolute.  According to the comment this can be removed as of 5.7.2.
 2020-09-06 19:57:21 +01:00
R. RyanTM
bd9c787dfd openlibm: 0.7.0 -> 0.7.1 2020-09-05 09:19:39 +00:00
Daniël de Kok
863724b3f3 blis: init at 0.7.0 2020-09-04 18:44:01 +02:00