R. RyanTM
b26ba90c34
jmol: 14.29.28 -> 14.29.29 ( #52275 )
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Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2018-12-16 09:22:07 +01:00
Michael Raskin
2f0cbb34cf
Merge pull request #52171 from r-ryantm/auto-update/pari
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pari: 2.11.0 -> 2.11.1
2018-12-15 12:08:50 +00:00
markuskowa
feb0aba969
Merge pull request #52153 from r-ryantm/auto-update/octopus
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octopus: 8.2 -> 8.3
2018-12-15 11:46:44 +01:00
R. RyanTM
943e6fa283
pari: 2.11.0 -> 2.11.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pari/versions
2018-12-14 22:17:15 -08:00
R. RyanTM
b8e09ad0b5
octopus: 8.2 -> 8.3
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Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/octopus/versions
2018-12-14 19:45:56 -08:00
luz.paz
ab9532b1fe
gmsh: 4.0.5 -> 4.0.7
2018-12-14 08:01:20 -05:00
Timo Kaufmann
f0ea741a9a
Merge pull request #51786 from symphorien/giac-1.5
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giac: 1.4.9 -> 1.5.0
2018-12-10 13:40:03 +01:00
Maximilian Bosch
de02111a51
Merge pull request #51534 from jbedo/bowtie2
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bowtie2: fix missing dependencies
2018-12-10 00:58:51 +01:00
Symphorien Gibol
29242e472e
giac: build with nauty support
2018-12-09 23:18:58 +01:00
Symphorien Gibol
2253b3e760
nauty: also install libs
2018-12-09 23:18:53 +01:00
Symphorien Gibol
8b4f885264
giac: add missing optional dependencies
2018-12-09 23:18:53 +01:00
Symphorien Gibol
e7801461e0
giac: don't split in multiple outputs for when gui enabled
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This breaks the Phys and Turtle menu, among other things.
2018-12-09 23:18:53 +01:00
Symphorien Gibol
b5435d0551
giac: 1.4.9 -> 1.5.0
2018-12-09 23:18:46 +01:00
Frederik Rietdijk
e0950ae9ad
Merge master into staging-next
2018-12-08 12:40:13 +01:00
Sebastien Maret
da314a44ea
gildas: 20181101_a -> 20181201_a
2018-12-06 12:02:05 +01:00
Justin Bedo
8c5251e3c0
bowtie2: fix missing dependencies
2018-12-05 10:51:30 +11:00
Frederik Rietdijk
a510aa2672
Merge master into staging-next
2018-12-03 12:18:43 +01:00
Timo Kaufmann
5f2b8de75c
Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 ( #49446 )" ( #51414 )
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This reverts commit d9b650f4cc
.
The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442 .
2018-12-03 00:44:33 +01:00
markuskowa
506d4c7e44
Merge pull request #51329 from c0bw3b/cleanup/gnu-https
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Favor HTTPS URLs - the GNU edition
2018-12-02 16:52:33 +01:00
c0bw3b
0498ccd076
Treewide: use HTTPS on GNU domains
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HTTP -> HTTPS for :
- http://gnu.org/
- http://www.gnu.org/
- http://elpa.gnu.org/
- http://lists.gnu.org/
- http://gcc.gnu.org/
- http://ftp.gnu.org/ (except in fetchurl mirrors)
- http://bugs.gnu.org/
2018-12-02 15:51:59 +01:00
c0bw3b
0f868d8116
Treewide: use HTTPS on SourceForge
2018-12-02 15:33:08 +01:00
Jan Tojnar
a51a99c690
gobject-introspection: rename package
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camelCase package name was a huge inconsistency in GNOME package set.
2018-12-02 12:42:29 +01:00
Brenton Horne
10f40f3ac6
scilab-bin: adding application launchers
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Moving the desktop configuration files from
opt/scilab-$ver/share/applications to share/applications, making the
required changes, and moving the icons in opt/scilab-$ver/share/icons to
share/icons. Moving locales, appdata and mime out of there
opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and
scilab-${majorVer} symlinks from bin/.
2018-12-02 17:53:40 +10:00
Brenton Horne
7041972128
scilab-bin: adding bin/scilab symlink ( #51346 )
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Should fix #51343 , merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.
2018-12-01 23:25:40 +01:00
Timo Kaufmann
88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix
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sage: misc fixes
2018-12-01 22:04:48 +01:00
Timo Kaufmann
0e570199de
sage: fix jmol integration
2018-12-01 21:31:29 +01:00
Timo Kaufmann
cb73495f02
sagenb: fix matplotlib path
2018-12-01 20:41:40 +01:00
Timo Kaufmann
d9b650f4cc
pythonPackages.cypari2: 1.3.1 -> 2.0.1 ( #49446 )
2018-12-01 12:57:55 +01:00
Jan Tojnar
c5881ec2c9
Merge remote-tracking branch 'upstream/master' into staging
2018-11-30 20:09:45 +01:00
Frederik Rietdijk
1828a5c5ba
Merge master into staging-next
2018-11-30 17:46:21 +01:00
Matthew Bauer
76c7a8bac0
Merge pull request #51205 from matthewbauer/more-setup-hooks
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Add premake & imake setup hook
2018-11-29 19:36:25 -06:00
Frederik Rietdijk
9b81c7e455
Merge staging-next into staging
2018-11-29 09:18:35 +01:00
Frederik Rietdijk
9db2421d1f
Merge master into staging-next
2018-11-29 08:12:56 +01:00
Matthew Bauer
c0a804c747
treewide: add dontUseImakeConfigure where needed
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We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:
- Xaw3d
- R
- tkgate
- ssvnc
2018-11-28 20:14:45 -06:00
Matthew Bauer
8a4da41849
xearth: use imake setup hook
2018-11-28 20:14:36 -06:00
Will Dietz
d7a0e03cfa
Merge pull request #51162 from dtzWill/update/z3-4.8.3
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z3: 4.8.1 -> 4.8.3
2018-11-28 18:15:31 -06:00
Timo Kaufmann
aa053197de
Merge pull request #51191 from timokau/sage-fixes
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sage: fix test timeout and downgraded R tests
2018-11-28 23:10:32 +01:00
Timo Kaufmann
d6376bca6d
sage: don't test the downgraded R
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Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249 . The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
2018-11-28 22:52:15 +01:00
Timo Kaufmann
359bf7f1e3
sage: disable test timeout
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Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
2018-11-28 22:37:24 +01:00
Renaud
d209180c78
Merge pull request #51087 from Luz/librepcb
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librepcb: 20181031 -> 0.1.0
2018-11-28 08:19:13 +01:00
Will Dietz
a034d90e3b
z3: 4.8.1 -> 4.8.3
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https://github.com/Z3Prover/z3/releases/tag/z3-4.8.3
2018-11-27 22:00:19 -06:00
R. RyanTM
36a0335d02
picard-tools: 2.18.14 -> 2.18.17 ( #50647 )
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* picard-tools: 2.18.14 -> 2.18.16
Changelog: https://github.com/broadinstitute/picard/releases/tag/2.18.16
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
* picard-tools: 2.18.16 -> 2.18.17
Changelog: https://github.com/broadinstitute/picard/releases/tag/2.18.17
2018-11-27 14:31:09 +01:00
Nick Hu
583911a0b2
quantomatic: init at 0.7
2018-11-26 21:51:58 +00:00
Luz
021b6e86fa
librepcb: 20181031 -> 0.1.0
2018-11-26 22:33:39 +01:00
Vladimír Čunát
a5de78b7d7
Merge branch 'master' into staging-next
2018-11-26 10:28:00 +01:00
Timo Kaufmann
2fbde72556
sage: add tkinter as matplotlib backend ( #51032 )
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Fixes #50959 .
2018-11-25 17:38:45 +01:00
Timo Kaufmann
98c94d3d7d
sage: add jupyter notebook support
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Fixes #48544 .
2018-11-25 15:54:31 +01:00
Timo Kaufmann
0c23fa9aaf
Merge pull request #50998 from timokau/sage-refactor
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Sage refactor
2018-11-24 23:59:28 +01:00
Timo Kaufmann
a0723f1285
sage: don't fix node version
2018-11-24 23:14:38 +01:00
Timo Kaufmann
e28a8ed287
sage: add some flexibility to the test runner
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Make it possible to run individual tests. This is very useful while
git-bisecting.
2018-11-24 23:14:38 +01:00