Orivej Desh
1f99fd6965
libminc: fix build after hdf5 upgrade by using hdf5_1_8
2017-12-01 00:37:29 +00:00
rybern
ef0486b1f9
vcftools: init at 0.1.15 ( #31339 )
2017-11-16 09:52:56 +02:00
Ryan Bernstein
941014ffff
bowtie2: init at 2.3.3.1
2017-10-22 00:11:49 +02:00
Orivej Desh
047c576353
Merge pull request #29963 from mimadrid/update/samtools-1.6.0
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samtools: 1.5.0 -> 1.6.0
2017-10-02 01:07:11 +00:00
Orivej Desh
d73bd7f50a
bcftools: fix up
2017-10-01 07:45:19 +00:00
Orivej Desh
09a5396982
samtools: fix up
2017-10-01 07:36:30 +00:00
mimadrid
bebccf176e
bcftools: 1.5.0 -> 1.6.0
2017-09-30 22:22:25 +02:00
mimadrid
ee2c76693e
samtools: 1.5.0 -> 1.6.0
2017-09-30 22:20:02 +02:00
Robin Gloster
7cbf3a27de
freebayes: clean up build
2017-09-28 00:54:01 +02:00
Samuel Leathers
a3e2ecd7f7
freebayes: 1.1.0 -> 2017-08-23
2017-09-28 00:54:01 +02:00
Tuomas Tynkkynen
4b4bfbf3e5
darwin: Disable another bunch of packages never having built successfully
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tecoc: https://hydra.nixos.org/build/61141995
shallot: https://hydra.nixos.org/build/61145497
plink-ng: https://hydra.nixos.org/build/61130149
tshark: https://hydra.nixos.org/build/61479600
2017-09-22 19:49:57 +03:00
Ben Darwin
c7bbe471b0
ants: bump version and fix sandboxed build
2017-09-20 18:42:34 -04:00
Robin Gloster
a0967948d9
bwa: 0.7.15 -> 0.7.16a
2017-09-05 14:42:45 +02:00
Samuel Leathers
d9cd226a6d
neuron: 7.4 -> 7.5
2017-09-02 16:58:14 -04:00
Ryan Bernstein
749e702a46
poretools: version number to commit date
2017-08-18 09:59:26 -04:00
Ryan Bernstein
a13e4ad1f5
poretools: init at 0.6.0
2017-08-17 11:17:30 -04:00
mimadrid
15a99ae367
bcftools: 1.4.0 -> 1.5.0
2017-08-13 00:17:48 +02:00
mimadrid
ca45a26ec3
samtools: 1.4.0 -> 1.5.0
2017-08-13 00:17:25 +02:00
Silvan Mosberger
f5fa5fa4d6
pkgs: refactor needless quoting of homepage meta attribute ( #27809 )
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* pkgs: refactor needless quoting of homepage meta attribute
A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.
* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit
* Fixed some instances
2017-08-01 22:03:30 +02:00
mimadrid
20fb18bdbc
igv: 2.3.89 -> 2.3.98
2017-08-01 20:46:31 +02:00
Shea Levy
24c59a4452
neuron: enable GUI
2017-06-28 11:59:54 -04:00
Justin Bedo
94ec54598c
snpeff: 4.3i -> 4.3p
2017-06-13 15:31:52 +10:00
Jörg Thalheim
be19ad150c
Merge pull request #25594 from mimadrid/update/htslib-1.4
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Update/htslib 1.4
2017-05-11 07:08:56 +01:00
mimadrid
8d1bebf83c
bcftools: 1.3.1 -> 1.4
2017-05-11 07:04:33 +01:00
mimadrid
9073e67568
samtools: 1.3.1 -> 1.4
2017-05-07 23:15:48 +02:00
Aneesh Agrawal
bd9246b009
treewide: Always use integers for meta.priority
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Meta attributes types are now enforce as of commit
90b9719f4f
2017-05-02 01:43:22 -04:00
Michael Raskin
7ef99bf054
Merge pull request #24085 from bcdarwin/ants
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ants: set $ANTSPATH variable in shell scripts
2017-04-30 23:03:06 +02:00
Matthias Beyer
6239da6ade
diamond: init at 0.8.36
2017-04-12 13:05:57 +02:00
Justin Bedő
c5015b77af
platypus: fix platforms metadata ( #24666 )
2017-04-06 10:10:54 +01:00
Robin Gloster
b9948fedc6
ncbi_tools: mark as broken and remove -fPIC
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PIC is used by default since 16.09
2017-03-30 16:23:34 +02:00
Ben Darwin
fbc9a4d7dc
ants: set $ANTSPATH variable in shell scripts
2017-03-22 16:01:05 -04:00
Franz Pletz
bfb7890fa0
Merge pull request #24191 from jbedo/bedtools
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bedtools: fix clang build
2017-03-22 15:30:19 +01:00
Justin Bedo
56aeb271c9
bedtools: fix clang build
2017-03-22 12:00:24 +11:00
Dan Peebles
7ad3fd7ca7
neuron: fix on clang 3.8 and above
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This is in preparation for upgrading Darwin stdenv to LLVM 4
2017-03-21 01:00:18 -04:00
Michael Raskin
4d5f33deff
Merge pull request #23376 from bcdarwin/ants
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ANTs: init at 2.1.0 (0gyys1lf) and update ITK accordingly
2017-03-18 18:42:24 +01:00
Robin Gloster
e2a13af49c
emboss: fix build
2017-03-13 13:15:51 +01:00
Justin Bedo
1ac797861b
SnpEff: init at 4.3i
2017-03-08 22:43:50 +01:00
Justin Bedo
076e513b94
varscan: init at 2.4.2
2017-03-08 22:43:49 +01:00
Justin Bedo
4bb50fd08c
picard-tools: init at 2.7.1
2017-03-08 22:43:45 +01:00
Justin Bedo
7f214e6410
bedtools: init at 2.26.0
2017-03-08 22:36:29 +01:00
Justin Bedo
661048c803
platypus: init at 2017-03-07
2017-03-08 22:36:03 +01:00
Ben Darwin
05359c327b
ANTs: init at 2.1.0 (0gyys1lf)
2017-03-01 21:06:30 -05:00
Celine Mercier
78c052e91a
ecopcr: init at 0.8.0
2017-02-06 16:01:08 +01:00
Ian Lancaster
5f67b7b30a
emboss: 6.0.1 -> 6.6.0
2017-02-04 19:05:48 -05:00
mimadrid
29cb10c021
igv: 2.3.77 -> 2.3.89
2016-12-23 19:37:10 -05:00
Jason Daniel Augustine Gilliland
59ca5d213f
freebayes: init at 1.1.0
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Signed-off-by: zimbatm <zimbatm@zimbatm.com>
2016-12-22 14:10:37 +00:00
Justin Bedo
a6d6a3972f
plink-ng: init at 1.90b3
2016-11-14 20:28:39 +11:00
Justin Bedo
ec31e2cc27
Fix bcftools installation prefix
2016-11-09 08:03:04 +11:00
Tim Steinbach
6d11e8ed4c
Remove pal2nal
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No longer build/exists
2016-11-03 21:58:47 -04:00
Tim Steinbach
c36a1d6502
paml: 4.2a -> 4.9c
2016-11-03 21:33:19 -04:00
