Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
{
mpi = super.mpich;
}
All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
We can use use `stdenv.hostPlatform.isStatic` instead, and move the
logic per package. The least opionated benefit of this is that it makes
it much easier to replace packages with modified ones, as there is no
longer any issue of overlay order.
CC @FRidh @matthewbauer
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/hdf5-threadsafe/versions.
These checks were done:
- built on NixOS
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -h’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -V’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --version’ and found version 1.10.2
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5perf_serial help’ got 0 exit code
- ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5cc --help’ got 0 exit code
- found 1.10.2 with grep in /nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2
- directory tree listing: https://gist.github.com/aedb29e367d0b709b77bbdc794b96dd6
The build provides as text a summary of the build, including the
absolute path of the compiler used for compilation. Unfortunately, this
pulls in stdenv.cc as a transitive closure.
So this change just calls remove-references-to as a postInstall step for
the one stdenv.cc dependency.
See #29889 for details.
The old forms presumably predates, or were made in ignorance of,
`let inherit`. This way is better style as the scoping as more lexical,
something which Nix can (or might already!) take advantage of.
This adds additional compression modes to hdf5.
Note: The szip license may not be compatible with everyone's use case. Hence,
it is an optional dependency.
