Profpatsch
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4a7f99d55d
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treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938
meta = with stdenv.lib;
is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.
This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.
The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
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2021-01-11 10:38:22 +01:00 |
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Jan Tojnar
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e6c0c98940
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Merge branch 'master' into staging-next
zynaddsubfx conflict has been updated to 3.0.1, which conflicted with rewrite after 3.0.5 update on a different branch.
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2021-01-08 02:07:34 +01:00 |
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Sandro
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7ae17783a7
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Merge pull request #108432 from jbedo/fastp
fastp: init 0.20.1
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2021-01-07 21:44:33 +01:00 |
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Jan Tojnar
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f19eb635b4
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Merge branch 'master' into staging-next
b04fc593e7 seems to have accidentally changed mkDerivation function for dfilemanager and solarus-quest-editor so I have reverted that here.
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2021-01-07 13:04:31 +01:00 |
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Justin Bedo
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bdf3d727ca
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fastp: init 0.20.1
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2021-01-07 18:24:19 +11:00 |
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Sandro
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0af4d59732
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Merge pull request #108437 from jbedo/varscan
varscan: 2.4.2 -> 2.4.4
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2021-01-06 00:19:30 +01:00 |
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Sandro
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31d6b1cd06
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Merge pull request #108435 from jbedo/last
last: 1145 -> 1170
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2021-01-06 00:18:41 +01:00 |
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Justin Bedo
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56dd3fa172
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varscan: 2.4.2 -> 2.4.4
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2021-01-05 10:55:28 +11:00 |
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Justin Bedo
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62432c855f
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last: 1145 -> 1170
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2021-01-05 10:29:31 +11:00 |
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Sandro Jäckel
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a8d360eca3
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raxml: cleanup
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2021-01-04 11:02:16 +01:00 |
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github-actions[bot]
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07165c7226
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Merge staging-next into staging
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2021-01-03 18:38:32 +00:00 |
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John Ericson
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b03fdcc7f9
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Merge pull request #108300 from siraben/parallel-cmake
treewide: remove enableParallelBuilding = true if using cmake
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2021-01-03 13:22:09 -05:00 |
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Pavol Rusnak
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77364ac7c0
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Merge pull request #108251 from prusnak/bowtie2
bowtie2: 2.3.5.1 -> 2.4.2
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2021-01-03 13:47:45 +01:00 |
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github-actions[bot]
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0649757570
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Merge staging-next into staging
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2021-01-03 12:24:59 +00:00 |
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Ben Siraphob
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3ae5e6ce03
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treewide: remove enableParallelBuilding = true if using cmake
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2021-01-03 18:37:40 +07:00 |
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Pavol Rusnak
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9139eb5aee
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bowtie2: 2.3.5.1 -> 2.4.2
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2021-01-02 22:18:32 +01:00 |
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Pavol Rusnak
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03b99f0721
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bowtie: init at at 1.3.0
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2021-01-02 19:46:59 +01:00 |
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Ben Siraphob
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b04fc593e7
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treewide: cmake buildInputs to nativeBuildInputs, minor cleanups
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2021-01-01 11:52:33 +07:00 |
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Justin Bedo
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3a65e29d4b
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SPAdes: add python dependency
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2020-12-21 08:29:57 +11:00 |
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Mario Rodas
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7666fb25d0
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Merge pull request #106856 from jbedo/delly
delly: 0.8.5 -> 0.8.6
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2020-12-14 08:10:03 -05:00 |
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Justin Bedo
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6ce06dccfc
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delly: 0.8.5 -> 0.8.6
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2020-12-14 09:55:57 +11:00 |
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R. RyanTM
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aa2148eb1f
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picard-tools: 2.23.8 -> 2.23.9
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2020-12-10 23:06:36 +00:00 |
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Ryan Mulligan
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4ce30eb63a
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Merge pull request #105672 from r-ryantm/auto-update/hmmer
hmmer: 3.3.1 -> 3.3.2
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2020-12-02 05:45:57 -08:00 |
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R. RyanTM
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6f50c5b18e
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hmmer: 3.3.1 -> 3.3.2
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2020-12-02 09:00:15 +00:00 |
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Ben Darwin
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ee7d83e648
|
ants: unbreak on Darwin
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2020-12-01 14:17:54 -05:00 |
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Justin Bedo
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5fc6258043
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bwa: expand supported platforms
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2020-11-30 09:46:51 +11:00 |
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R. RyanTM
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212ba486d6
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igv: 2.8.12 -> 2.8.13
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2020-11-28 02:18:00 +00:00 |
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Sandro
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c2d728f195
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Merge pull request #102140 from SuperSandro2000/patch-2
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2020-11-26 01:00:22 +01:00 |
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Sandro
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d8b570e6c8
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Merge pull request #98363 from jbedo/mosdepth
mosdepth: 0.2.9 -> 0.3.1
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2020-11-25 23:55:47 +01:00 |
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Sandro
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e166f22759
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tebreak: Fix tests
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2020-11-25 21:36:38 +01:00 |
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Sandro
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5f2997686c
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deeptools: Fix tests
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2020-11-25 21:36:37 +01:00 |
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R. RyanTM
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3b17793827
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star: 2.7.5c -> 2.7.6a
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2020-11-23 20:40:05 +01:00 |
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Ryan Mulligan
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80b6df2a17
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Merge pull request #103525 from r-ryantm/auto-update/samblaster
samblaster: 0.1.24 -> 0.1.26
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2020-11-16 19:03:03 -08:00 |
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Ryan Mulligan
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47fe890182
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Merge pull request #103751 from r-ryantm/auto-update/last
last: 1133 -> 1145
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2020-11-14 15:08:46 -08:00 |
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R. RyanTM
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a698dfa0a2
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last: 1133 -> 1145
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2020-11-13 23:30:53 +00:00 |
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R. RyanTM
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82d1113013
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igv: 2.8.11 -> 2.8.12
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2020-11-13 18:25:51 +00:00 |
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R. RyanTM
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d1baaef83d
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samblaster: 0.1.24 -> 0.1.26
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2020-11-12 01:43:02 +00:00 |
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Ryan Mulligan
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ba3fc8bf47
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Merge pull request #102707 from r-ryantm/auto-update/picard-tools
picard-tools: 2.23.4 -> 2.23.8
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2020-11-04 06:11:08 -08:00 |
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R. RyanTM
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6391d3c1b5
|
picard-tools: 2.23.4 -> 2.23.8
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2020-11-04 04:53:50 +00:00 |
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Kevin Cox
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d7a0daf2a1
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Merge pull request #102420 from freezeboy/remove-plink
plink: remove (broken since 2014)
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2020-11-03 07:49:09 -05:00 |
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R. RyanTM
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8ef46be2a4
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igv: 2.8.9 -> 2.8.11
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2020-11-02 10:16:32 +00:00 |
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freezeboy
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1f7e201e9e
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plink: remove (broken since 2014)
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2020-11-02 03:24:16 +01:00 |
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Justin Bedo
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32573f4b6e
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last: 1066 -> 1133
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2020-10-31 10:59:02 +11:00 |
|
Renato Alves
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6e19ed0a52
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lumpy: 0.3.0 -> 0.3.1
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2020-10-30 01:28:00 +01:00 |
|
Renato Alves
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a28e5b0a4f
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samtools: 1.10 -> 1.11
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2020-10-29 18:27:22 +01:00 |
|
Ben Siraphob
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db74029e3e
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treewide: remove package names from prefix of descriptions
|
2020-10-27 09:15:07 -07:00 |
|
Ben Siraphob
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683a87dbeb
|
treewide: remove periods from end of package descriptions
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2020-10-17 08:22:31 -07:00 |
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Ryan Mulligan
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f9728adae7
|
Merge pull request #99128 from jbedo/delly
delly: 0.8.2 -> 0.8.5
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2020-10-16 06:30:11 -07:00 |
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R. RyanTM
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a3dca9576b
|
deeptools: 3.4.1 -> 3.5.0
|
2020-10-16 00:42:47 -07:00 |
|
Doron Behar
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1db3202722
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Merge pull request #75843 from jbedo/lumpy
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2020-10-15 19:46:13 +03:00 |
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