JakeHillion/nixpkgs
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6216f5da04
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2020 Commits

Author SHA1 Message Date
xeji
6216f5da04
Merge pull request #45263 from r-ryantm/auto-update/bowtie2 
bowtie2: 2.3.4.1 -> 2.3.4.2
 2018-08-21 19:51:36 +02:00
Uli Baum
c47aafde87 bowtie2: broken on aarch64 
never built as far back as hydra logs go.
 2018-08-21 19:11:37 +02:00
Vladimír Čunát
765d695b89
Merge branch 'staging-next' 
Security fixes for a few packages are included.
 2018-08-21 15:36:02 +02:00
Vladimír Čunát
d0888d1503
treewide: fixup breakage due to absolute compiler path 
Some packages just can't handle them #44767.  It was tempting to try
to abstract this in some way, but I didn't do that ATM.
 2018-08-21 12:34:33 +02:00
xeji
54ff14b6f3
Merge pull request #45399 from markuskowa/license-8 
Add licenses
 2018-08-21 12:05:10 +02:00
Jörg Thalheim
736db8db10
Merge pull request #44951 from rittelle/eagle 
eagle: 7.7 -> 9.1.2
 2018-08-21 10:51:13 +01:00
Markus Kowalewski
a1129ef9cb
glsurf: add license 2018-08-20 21:15:16 +02:00
Markus Kowalewski
3c1819fcce
ginac: add license 2018-08-20 21:02:45 +02:00
Joachim F
6755ab8b34
Merge pull request #44250 from jbedo/strelka 
strelka: init 2.9.5
 2018-08-20 06:24:15 +00:00
Justin Bedo
27960b6acf
strelka: init 2.9.5 2018-08-20 08:58:22 +10:00
rittelle
9e4d2d723a
eagle: 7.7 -> 9.1.2 
Updated eagle to version to 9.1.2 while keeping version 7.7 as eagle7.
 2018-08-19 15:36:08 +02:00
Jörg Thalheim
4609e3abf2
Merge pull request #45303 from markuskowa/molden-up 
molden: 5.7 -> 5.8.2
 2018-08-19 13:32:28 +01:00
Markus Kowalewski
04d283ecda
molden: patch to deactivate extension installer script 2018-08-19 11:29:31 +02:00
Orivej Desh
65663f883c msgpack: rename from libmsgpack 
The project does not use the name "libmsgpack". It variously uses "msgpack" and
"msgpack-c", and "msgpackc" for the name of the library.
 2018-08-18 23:19:54 +00:00
Markus Kowalewski
79bf57ca23
molden: 5.7 -> 5.8.2 2018-08-18 14:24:39 +02:00
Vladimír Čunát
209730208a
Merge branch 'staging-next' 2018-08-17 20:51:31 +02:00
Jörg Thalheim
5cb9703a8f
Merge pull request #45173 from r-ryantm/auto-update/octopus 
octopus: 8.1 -> 8.2
 2018-08-17 16:10:43 +01:00
R. RyanTM
73f1448a1f bowtie2: 2.3.4.1 -> 2.3.4.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions.
 2018-08-17 06:50:10 -07:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next 
Hydra: ?compare=1473892
 2018-08-17 13:45:21 +02:00
Jörg Thalheim
3dd311bde9
Merge pull request #45220 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.92 -> 3.3.93
 2018-08-17 11:58:27 +01:00
Jörg Thalheim
0359c5eb65
Merge pull request #45217 from r-ryantm/auto-update/igv 
igv: 2.4.13 -> 2.4.14
 2018-08-17 11:56:26 +01:00
Peter Simons
a721bc4bf3
Merge pull request #45134 from r-ryantm/auto-update/stellarium 
stellarium: 0.18.1 -> 0.18.2
 2018-08-17 11:55:31 +02:00
R. RyanTM
190bd05de2 gtkwave: 3.3.92 -> 3.3.93 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions.
 2018-08-17 02:05:58 -07:00
R. RyanTM
33ebfbfcf8 igv: 2.4.13 -> 2.4.14 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions.
 2018-08-17 01:23:03 -07:00
R. RyanTM
ae846c0c03 octopus: 8.1 -> 8.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/octopus/versions.
 2018-08-16 20:04:53 -07:00
Jörg Thalheim
4e9b4a9ca7
Merge pull request #45158 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.18.10 -> 2.18.11
 2018-08-17 00:36:56 +02:00
R. RyanTM
ff7d82d405 picard-tools: 2.18.10 -> 2.18.11 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions.
 2018-08-16 14:33:38 -07:00
R. RyanTM
c274490146 stellarium: 0.18.1 -> 0.18.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/stellarium/versions.
 2018-08-16 12:03:22 -07:00
zimbatm
b7e50d52f0
caffe: add darwin support (#44616) 2018-08-16 12:46:51 +01:00
Gabriel Ebner
f207998d79 qalculate-gtk: 2.6.1 -> 2.6.2 2018-08-16 11:56:27 +02:00
Austin Seipp
d5e496a2bb boolector: 2.4.1 -> 3.0.0, relicensed to MIT 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2018-08-15 20:44:05 -05:00
Austin Seipp
9b64100add btor2tools: init at pre55_8c150b39 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2018-08-15 20:44:05 -05:00
Austin Seipp
68cc845295 lingeling: init at pre1_03b4860d 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2018-08-15 20:44:05 -05:00
Austin Seipp
6e910b2b3d aiger: clean up configurePhase, install multi-output objects/headers 
The library and header files are useful for other tools, such as
the upcoming 'lingeling'.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2018-08-15 20:44:05 -05:00
Michael Mercier
b8566965df Update simgrid 3.19.1 -> 3.20 + parallel tests + enable darwin (#42721) 
* simgrid: 3.19.1 -> 3.20

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/simgrid/versions.

These checks were done:

- built on NixOS
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicc passed the binary check.
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpicxx passed the binary check.
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpirun passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/tesh had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid-colorizer passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_update_xml had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/simgrid_convert_TI_traces passed the binary check.
- Warning: no invocation of /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/smpimain had a zero exit code or showed the expected version
- /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20/bin/graphicator passed the binary check.
- 6 of 9 passed binary check by having a zero exit code.
- 4 of 9 passed binary check by having the new version present in output.
- found 3.20 with grep in /nix/store/cvyi6hvgc9rvgrnp7c028xrlzbl7jzb9-simgrid-3.20
- directory tree listing: https://gist.github.com/edefc2f1a2e81412484edc2e45986e03
- du listing: https://gist.github.com/a44f7d57537e93152a8e6c569f8ed1ae

* simgrid: 3.19.1 -> 3.20 + add darwin

- Fix dependencies to enable build on darwin
- Add ctest flag to enable parallel testing

* Use simpler parallel testing logic

because it is already done in nixpkgs/pkgs/stdenv/generic/setup.sh
 2018-08-15 19:54:41 -05:00
Bernard Fortz
22c15abe20 cplex: init at 12.8 (#44029) 
* cplex: init at 12.8

* Removed bundled java from bin directory

* Refactored

* More refactoring

* Added config option for releasePath

* Minor cleanup
 2018-08-15 19:46:09 -05:00
adisbladis
2937e7367f
Merge pull request #45009 from jbaum98/ratpoints-darwin 
ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support
 2018-08-15 15:28:39 +08:00
Jörg Thalheim
0ee6d7e3ab
Merge pull request #45011 from jbaum98/symmetrica-darwin 
symmetrica: Add darwin support
 2018-08-15 07:54:56 +02:00
Jake Waksbaum
47aa6abe96 ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support 2018-08-14 11:27:59 -04:00
Jake Waksbaum
8ae47fa81a symmetrica: Add darwin support 2018-08-14 11:23:21 -04:00
Jake Waksbaum
be81e1e29c gfan: Add darwin support 2018-08-14 00:16:46 -04:00
Vladimír Čunát
5b0398dc36
Merge branch 'master' into staging-next 
Conflicts: gobby and libinfinity - I took the hand-edited versions
instead of those resuting from the mass-replacement.

Hydra: ?compare=1473190
 2018-08-13 20:43:59 +02:00
Sebastien Maret
b4599987e3 gildas: 20180701_a -> 20180801_a 2018-08-13 15:17:15 +02:00
Gabriel Ebner
7478da5e84
Merge pull request #42885 from smaret/gildas 
gildas: 20180601_a -> 20180701_a
 2018-08-13 10:55:18 +02:00
Samuel Dionne-Riel
c9035c6e12
Merge pull request #44681 from r-ryantm/auto-update/vcftools 
vcftools: 0.1.15 -> 0.1.16
 2018-08-12 19:26:38 -04:00
Vladimír Čunát
00df25ee57
Merge branch 'master' into staging-next 
Hydra: ?compare=1472947
 2018-08-12 10:33:41 +02:00
Sebastien Maret
e3b42396c6 gildas: update source url 2018-08-10 10:13:31 +02:00
Sebastien Maret
170426510e gildas: patch perl interpreter path 2018-08-10 10:04:27 +02:00
Silvan Mosberger
68d3350433
Merge pull request #44837 from Infinisil/fix/sad 
sad: fix build
 2018-08-09 22:36:14 +02:00
Jake Waksbaum
3babbaaa47 palp: Add darwin support (#44829) 2018-08-09 22:28:27 +02:00