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568 Commits

Author SHA1 Message Date
Matthew Bauer
2c1d3a9a82 Merge remote-tracking branch 'upstream/master' into staging 2018-11-18 19:02:09 -06:00
Orivej Desh
e66d263f6b eigen3_3: move version overrides to all-packages.nix 2018-11-18 10:53:25 +00:00
Frederik Rietdijk
63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Renaud
cde945a165
Merge pull request #48044 from schneefux/pkg/fetchfromgithub 
treewide: Use fetchFromGitHub instead of fetchurl
 2018-11-14 09:48:22 +01:00
Matthew Bauer
f2a20b6e52 treewide: use wafHook 
Replace "waf" phases with wafHook that manages everything
automatically. Should make things more modular.

Packages affected here are:

- a2jmidid
- ams-lv2
- ardour
- fomp
- guitarix
- ingen
- jalv
- mda-lv2
- non
- patchage
- hamster-time-tracker
- kupfer
- xiphos
- xfce4-dockbarx-plugin
- xfce4-namebar-plugin
- dropbox
- clasp
- aubio
- liliv
- lv2
- lvtk
- ntk
- raul
- sratom
- suil
- ganv
- ndn-cxx
- ns3
- serd
- sord
- termbox
- wxmupen64plus
- jackaudio
- pflask
- blockhash
- glmark2
- weighttp
 2018-11-13 19:13:48 -06:00
Daiderd Jordan
5b8c4b0646
suitesparse: fixup darwin libraries 
The build created libraries with an install_name that points to the
build directory instead of the installation prefix.  Causing errors like
this when other packages try to link against it's libraries.

    Library not loaded: /private/tmp/nix-build-suitesparse-5.3.0.drv-0/SuiteSparse/lib/libcholmod.3.0.12.dylib
 2018-11-13 00:25:32 +01:00
markuskowa
45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski
06f3676770
scalapack: set platform to linux 2018-11-11 02:17:20 +01:00
markuskowa
bf8c031074
Merge pull request #49199 from markuskowa/fet-scalapack 
scalapack: switch to openblas and add test
 2018-11-05 21:12:01 +01:00
Matthew Bauer
95373d3634 atlas: remove 
atlas is broken and can apparently be removed.

Fixes #49594
 2018-11-04 20:23:12 -06:00
Patrick Hilhorst
4cfeb9da53
cudatoolkit, cudnn: many updates 
cudatoolkit_9_1: 9.1.85.1 -> 9.1.85.3
cudatoolkit_9_2: init at 9.2.148.1
cudatoolkit_9: 9.1.85.1 -> 9.2.148.1
cudatoolkit_10, cudatoolkit_10_0: init at 10.0.130

cudnn_cudatoolkit_9_0: 7.0.5 -> 7.3.0
cudnn_cudatoolkit_9_1: init at 7.1.3
cudnn_cudatoolkit_9_2: init at 7.2.1
cudnn_cudatoolkit_9: 7.0.5 (9.1) -> 7.3.1 (9.2)
cudnn_cudatoolkit_10, cudnn_cudatoolkit_10_0: init at 7.3.1
 2018-10-30 19:09:20 +01:00
Markus Kowalewski
41a579aa68
scalapack: switch to openblas + add test 
* change from blas,lapack to openblas
* add check phase
* enable parallel building
* fix license
 2018-10-27 01:06:07 +02:00
Mateusz Kowalczyk
02fb26136c or-tools: new package (v6.9.1) 2018-10-25 14:15:13 +09:00
Mateusz Kowalczyk
b41f8936b9 QuadProgpp: Add new package. 
Necessary for #48895.
 2018-10-24 09:19:26 +09:00
Michael Raskin
acb7d85993 lrs: init at 7.0 2018-10-23 11:41:29 +03:00
Renaud
0cc07aeee6
Merge pull request #48172 from jluttine/cholmod-extra-1.2.0 
cholmod-extra: init at 1.2.0
 2018-10-21 17:28:30 +02:00
Thomas Tuegel
2e4397f631
Merge pull request #35213 from jluttine/suitesparse-5.1.2 
suitesparse: 4.4.4 -> 5.3.0
 2018-10-20 08:07:27 -05:00
Jörg Thalheim
351319e557
Merge pull request #48419 from r-ryantm/auto-update/ipopt 
ipopt: 3.12.10 -> 3.12.11
 2018-10-15 21:36:42 +01:00
Matthew Bauer
0b298d516a
Merge pull request #47182 from bhipple/add/mkl 
mkl: init at 2019.0.117
 2018-10-15 15:17:57 -05:00
R. RyanTM
ab050719ba ipopt: 3.12.10 -> 3.12.11 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
 2018-10-14 08:11:02 -07:00
Jaakko Luttinen
f065de344d
cholmod-extra: init at 1.2.0 2018-10-10 22:08:25 +03:00
Jaakko Luttinen
8fb27604fb
suitesparse: 4.4.4 -> 5.3.0 2018-10-10 07:36:00 +03:00
schneefux
d81a96e601 mirtk: use fetchFromGitHub instead of fetchgit 2018-10-08 14:33:55 +02:00
Timo Kaufmann
65589faa2f zn_poly: 0.9 -> 0.9.1 
Sage has taken over maintenance since the original author no longer
maintains the project.
 2018-10-05 15:50:30 +02:00
Benjamin Hipple
0b82df8dbe Convert entire mkl package to a fixed-output derivation 2018-10-04 13:16:20 +00:00
Benjamin Hipple
ba02a2c371 Add Darwin as a supported platform 2018-10-02 22:53:48 -04:00
Daiderd Jordan
1383c08f2c
Merge branch 'master' into staging-next 2018-10-01 19:42:07 +02:00
R. RyanTM
0e5e4aed06 arpack: 3.5.0 -> 3.6.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/arpack/versions
 2018-09-26 11:28:59 +02:00
John Ericson
c701d6cb21 Merge remote-tracking branch 'upstream/master' into staging 2018-09-25 14:20:27 -04:00
Will Dietz
8a0a34f766 openblas: try leaving openmp enabled w/musl 2018-09-25 00:08:17 -05:00
Dmitry Vyal
81caec3568 openblas-0.3.1 -> 0.3.3 2018-09-23 09:35:29 +02:00
Frederik Rietdijk
14673d61ed Merge master into staging 2018-09-23 09:33:09 +02:00
Benjamin Hipple
d7c1d04af4 mkl: init at 2019.0.117 
This packags the Intel Math Kernel library on x86-64 platforms, which is a
dependency for many data science and machine learning packages.

Upstream, Intel provides proprietary binary RPMs with a permissive
redistribution license. These have been repackaged in both Debian and Anaconda,
so we are not the first distribution to redistribute.
 2018-09-22 15:28:39 -04:00
Orivej Desh
f0c0e2acc6 htslib: 1.7 -> 1.9 2018-09-21 22:42:28 +00:00
John Ericson
7319013ea1 Merge remote-tracking branch 'upstream/master' into staging 2018-09-18 16:55:42 -04:00
Christopher Ostrouchov
9ef31b2f96 papi: init at 5.6.0 (#46619) 
papi is a high resolution performance counter.
 2018-09-13 23:35:06 +02:00
Christopher Ostrouchov
e34a9fff1f scalapack: init at 2.0.2 (#46610) 
Added scalapack with flexibility to choose blas, lapack, and mpi
implementation.
 2018-09-13 21:27:47 +02:00
Uli Baum
79d9145469 parmetis: set license to unfree 
generic unfree license fits best
 2018-09-13 21:10:40 +02:00
Christopher Ostrouchov
3c2a74719a parmetis: init at 4.0.3 (#46615) 2018-09-13 21:02:17 +02:00
Daiderd Jordan
89e52157c8
Merge pull request #46584 from LnL7/darwin-broken-a 
broken darwin packages (a)
 2018-09-13 00:05:42 +02:00
Josef Kemetmüller
d726c0ff1d scs: Fix darwin build 
Additionally we make the unit-test deterministic by specifying a seed
instead of using something random.
 2018-09-12 20:58:26 +02:00
Daiderd Jordan
f1542f612b
atlas: mark broken on darwin 
Started to fail since 3.10.3.

    /private/tmp/nix-build-atlas-3.10.3.drv-0/ATLAS/build/bin/ATLrun.sh: line 4: 31119 Segmentation fault: 11  $atldir/$*
    make[3]: *** [Makefile:1695: ssanity_test] Error 139

/cc ZHF #45961
 2018-09-12 20:50:54 +02:00
Timo Kaufmann
408eacbc89 openblas: fix pkg-config alias name 
Turns out the filename is important. It should be `cblas`, not
`openblas-cblas`.
 2018-09-03 23:57:45 +02:00
Robert Schütz
93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
John Ericson
2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system 
It is deprecated and will be removed after 18.09.
 2018-08-30 17:20:32 -04:00
Robert Schütz
a9780a095b Merge branch 'master' into staging-next 2018-08-30 21:56:13 +02:00
Jan Tojnar
c1e53166ad
Revert "sympow: don't use placeholder" 
This reverts commit bae15c811f.
 2018-08-30 18:18:30 +02:00
Timo Kaufmann
c614c15f93
Merge pull request #45257 from timokau/openblas-pc 
openblas: add pkg-config aliases
 2018-08-26 20:13:19 +02:00
Benjamin Hipple
291de70ed6 scs: init at 2.0.2 (#45294) 2018-08-23 23:26:41 +02:00
Timo Kaufmann
26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Vladimír Čunát
153a19df05
Merge branch 'master' into staging-next 
Hydra: ?compare=1474536
 2018-08-20 09:15:33 +02:00
Timo Kaufmann
8014c7f186
Merge pull request #45013 from jbaum98/fflas-ffpack_darwin 
fflas-ffpack: Add darwin support
 2018-08-19 16:24:52 +02:00
Jake Waksbaum
8374400cec fflas-ffpack: Add darwin support 2018-08-18 20:28:06 +00:00
Benjamin Hipple
65bb0b23b9 Add platforms.all 2018-08-18 12:11:06 -04:00
Benjamin Hipple
460029cf94 ecos: init at 2.0.6 2018-08-18 03:38:50 +00:00
Vladimír Čunát
14aa936ec5
Merge branch 'staging-next' into staging 2018-08-17 20:53:27 +02:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next 
Hydra: ?compare=1473892
 2018-08-17 13:45:21 +02:00
Sarah Brofeldt
692c02ff4b
Merge pull request #44993 from bcdarwin/MIRTK 
mirtk: init at 2.0.0
 2018-08-16 10:51:12 +02:00
Jake Waksbaum
c0c854da95 zn_poly: Add darwin support 2018-08-14 00:49:42 -04:00
Ben Darwin
0adc6f4d8f mirtk: init at 2.0.0 2018-08-13 15:55:04 -04:00
Vladimír Čunát
ded9a4b1aa
Merge branch 'staging-next' into staging 
Commits from master, conflict resolutions, etc.
 2018-08-13 20:57:50 +02:00
Vladimír Čunát
00df25ee57
Merge branch 'master' into staging-next 
Hydra: ?compare=1472947
 2018-08-12 10:33:41 +02:00
Jan Malakhovski
b2563a55b7 nifticlib: disable tests 2018-08-11 09:35:38 +00:00
Jake Waksbaum
6385e5ffda lcalc: Add darwin support (#44850) 2018-08-10 09:53:52 +02:00
Frederik Rietdijk
d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann
aabc55e154 libhomfly: init at 1.02r5 
libhomfly is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
 2018-08-05 16:50:33 +02:00
Timo Kaufmann
34c2f4150b libbraiding: init at 1.0 
libbraiding is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
 2018-08-05 16:50:32 +02:00
Timo Kaufmann
e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
John Ericson
db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
Frederik Rietdijk
ad47d658d1 Merge master into staging-next 2018-07-21 19:43:53 +02:00
Jörg Thalheim
218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth
6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk
8213ff161c Merge master into staging-next 2018-07-19 18:24:24 +02:00
Luke Adams
eba8679bc5 cudnn*_cudatoolkit*: use public NVIDIA mirror (#31551) 
* cudnn*_cudatoolkit*: use NVIDIA mirror instead of requireFile

* cudnn_cudatoolkit7: update hash since public mirror is different
 2018-07-18 03:21:57 +00:00
Will Dietz
1b3d8eefe3 openblas: backport another patch, fix crash w/Go and Octave 
Also fixes numpy crashing during tests w/musl.
 2018-07-12 12:03:26 -05:00
Timo Kaufmann
d2f0fc1f41 openblas: backport fix 
https://github.com/xianyi/OpenBLAS/issues/1666

Causing test failures in cvxopt and (according to an openblas issue) numpy.
 2018-07-11 22:06:32 +02:00
aszlig
c8ed322b04
openblas: 0.3.0 -> 0.3.1 
Since the exposure of the version attribute done in
892a0e8ff4, the OpenBLAS build fails for
i686-linux:

https://nix-cache.s3.amazonaws.com/log/wi79zyfmwdpwx7bm29dzqh4vglx3x550-openblas-0.3.0.drv

According to @edolstra the build slaves of Hydra updated to a new
kernel, which seems to be the real cause for this issue. The latter is
already tracked upstream[1] and a fix[2] is already included in version
0.3.1.

This very update cases 4795 rebuilds across all architectures we
support, so it's still not significant enough to go through staging. In
addition the number of rebuilds doesn't include the amount of builds
that are currently failing.

My original idea was to add a patch just for fixing this on i686-linux
and do the real update via staging, but the amount of rebuilds still is
in an acceptable range IMO and @edolstra agreed on that on IRC.

[1]: https://github.com/xianyi/OpenBLAS/issues/1575
[2]: https://github.com/xianyi/OpenBLAS/pull/1583

Signed-off-by: aszlig <aszlig@nix.build>
Cc: @ttuegel
 2018-07-01 18:46:36 +02:00
Timo Kaufmann
5d78baa37a sympow: actually install datafiles 2018-06-30 01:20:46 +02:00
Timo Kaufmann
082169ab02 fetchurl: add sageupstream mirror 2018-06-30 01:20:44 +02:00
Timo Kaufmann
892a0e8ff4 openblas: expose version attribute 2018-06-30 01:20:44 +02:00
Matthew Bauer
753544ab52
Merge pull request #42471 from r-ryantm/auto-update/openlibm 
openlibm: 0.5.5 -> 0.6.0
 2018-06-28 22:06:11 -04:00
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676) 
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
 2018-06-28 20:43:35 +02:00
R. RyanTM
b9137d6bce openlibm: 0.5.5 -> 0.6.0 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/openlibm/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.6.0 with grep in /nix/store/crnh2jiksr0b3sq5v6fc9x7zrrsjgirg-openlibm-0.6.0
- directory tree listing: https://gist.github.com/c287196625881e2d6c72af761704718e
- du listing: https://gist.github.com/ac9a45900fb2ba4ff48120c343677dec
 2018-06-23 18:48:17 -07:00
R. RyanTM
12a554dc31 brial: 1.2.3 -> 1.2.4 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/brial/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.2.4 with grep in /nix/store/d80z046q8l3rhi7zwbcxzaydfrqxvzq9-brial-1.2.4
- directory tree listing: https://gist.github.com/73a4fe4d778faacdf1c17f40a83e3884
- du listing: https://gist.github.com/23202c35b020ea0976f7c4ff9e23ca2c
 2018-06-19 16:52:22 -07:00
Vladimír Čunát
31530c185e
Merge a subset of staging (security) 
In particular, this contains Firefox-related and libgcrypt updates.
Other larger rebuilds would apparently need lots of time to catch up
on Hydra, due to nontrivial rebuilds in other branches than staging.
 2018-06-15 08:48:02 +02:00
R. RyanTM
cc9fc2bdcd ipopt: 3.12.9 -> 3.12.10 (#41555) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ipopt/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 3.12.10 with grep in /nix/store/6748l35g9dz7z77wqwal99ylrhn87liv-ipopt-3.12.10
- directory tree listing: https://gist.github.com/5da4bb4853af0913caca26e8cbc87666
- du listing: https://gist.github.com/c4d8373c7d9a61f39479151fdffa99cb
 2018-06-09 23:33:17 +02:00
Will Dietz
912b58a2c1 openblas: workaround mass-rebuilds 
Thanks for the suggestion:
https://github.com/NixOS/nixpkgs/pull/41639#issuecomment-395509669
 2018-06-07 13:38:08 -05:00
Will Dietz
b1d54822e4 openblas: remove patch that's no longer needed (PR merged) 2018-06-07 12:20:08 -05:00
Frederik Rietdijk
4dc7cc8cc7
Merge pull request #41259 from jyp/tf-1.7.1-bin 
python.pkgs.tensorflow: wheel version
 2018-06-07 11:27:39 +02:00
R. RyanTM
9d1d274928 openblas: 0.2.20 -> 0.3.0 (#41054) 2018-06-03 13:23:38 +00:00
Jean-Philippe Bernardy
397c4b7748 cudatoolkit: add 9.0 
This version is a dependency of tensorflow binaries
 2018-05-31 22:21:54 +02:00
Jean-Philippe Bernardy
9e730ee254 renaming cudatoolkit version numbers 2018-05-31 22:21:53 +02:00
Orivej Desh
0159beb89c ns-3: fix build after #28029 2018-05-30 02:37:40 +00:00
Ben Darwin
7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Robert Schütz
6e6005c2af
Merge pull request #38794 from timokau/brial-init 
brial: init at 1.2.3
 2018-05-08 08:08:15 +02:00
Timo Kaufmann
8b5ecf9141 brial: init at 1.2.3 2018-05-08 01:27:35 +02:00
Timo Kaufmann
ca9ea31ae1 liblapack: 3.4.1 -> 3.8.0 2018-05-06 21:12:01 +02:00
Matthew Justin Bauer
8e6684ca32
Merge pull request #39795 from r-ryantm/auto-update/atlas 
atlas: 3.10.2 -> 3.10.3
 2018-05-04 17:18:23 -05:00
R. RyanTM
24761ef5d4 atlas: 3.10.2 -> 3.10.3 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/atlas/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/bgqampvgm3zdncg3206n7qnvyvl0jipj-atlas-3.10.3
- directory tree listing: https://gist.github.com/a7dd287df10b13796423e3c2df0850eb
 2018-04-30 23:08:21 -07:00
Timo Kaufmann
a0076a4fb6 rubiks: fix build 2018-04-27 17:53:58 +02:00
Daiderd Jordan
bae15c811f
sympow: don't use placeholder 2018-04-26 22:50:36 +02:00
Matthew Justin Bauer
7ebb6212a2
Merge pull request #38805 from timokau/zn_poly-init 
zn_poly: init at 0.9
 2018-04-24 09:28:27 -05:00
Timo Kaufmann
28c023e246 zn_poly: init at 0.9 2018-04-22 20:44:06 +02:00
Timo Kaufmann
0c9aaf0814 rankwidth: init at 0.7 2018-04-22 20:11:49 +02:00
Timo Kaufmann
b74e884aab flintqs: init at 1.0 2018-04-21 20:43:56 -05:00
Timo Kaufmann
d0d7894f75 rubiks: init at 20070917 2018-04-21 20:42:58 -05:00
Timo Kaufmann
10124a4743 lcalc: init at 1.23 (#38796) 2018-04-21 20:38:40 -05:00
Jörg Thalheim
f7785dd61c
Merge branch 'master' into minc_ecosystem 2018-04-21 20:18:27 +01:00
Jörg Thalheim
38d6decac3
Merge pull request #38804 from timokau/sympow-init 
sympow: init at 1.018.1
 2018-04-21 19:46:59 +01:00
Timo Kaufmann
f8fbe0f157 sympow: init at 1.018.1 2018-04-20 10:28:44 +02:00
Timo Kaufmann
d8e5160b23 planarity: init at 3.0.0.5 (#38800) 2018-04-19 08:43:44 +02:00
Jörg Thalheim
be5ad658df
Merge pull request #38971 from knedlsepp/fix-darwin-gpu-stuff 
Fix clblas and libgpuarray on darwin
 2018-04-17 13:58:54 +01:00
Josef Kemetmüller
357d8f600c clblas: Enable darwin build 2018-04-15 12:12:25 +02:00
Robert Schütz
089eefe724
Merge pull request #38795 from timokau/cliquer-init 
cliquer: init at 1.21
 2018-04-14 17:41:11 +02:00
Timo Kaufmann
2c23faa3d8 cliquer: init at 1.21 2018-04-14 10:33:54 +02:00
Timo Kaufmann
7d625f6c08 m4rie: init at 20150908 2018-04-12 13:40:27 +02:00
Robert Schütz
077bf8de4c
Merge pull request #38762 from timokau/m4ri-init 
m4ri: init at 20140914
 2018-04-12 13:26:52 +02:00
Timo Kaufmann
280b421cbb m4ri: init at 20140914 2018-04-12 13:24:20 +02:00
Ben Darwin
1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin
efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00
Ben Darwin
12fa2f9fd3 metadata fixes: EBTKS, MNI::Perllib, Text::Format 2018-04-10 00:53:55 -04:00
Ben Darwin
c1488921a0 oobicpl: init at 2016-03-02 2018-04-09 18:07:52 -04:00
Ben Darwin
d094f52112 fix EBTKS version naming 2018-04-09 18:07:15 -04:00
Ben Darwin
c9db4cabc8 bicpl: init at 2017-09-10 2018-04-09 18:07:15 -04:00
Ben Darwin
cf2aac6a04 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
Ben Darwin
e7d447ce2c EBTKS: init at 1.6.50 (develop branch) 2018-04-09 18:06:33 -04:00
Frederik Rietdijk
595a72589f Merge master into staging 2018-04-08 10:54:17 +02:00
Matthieu Coudron
863c2908f2 ns-3: init at 28.0 
ns-3 is a discrete event C++ network simulator developed at www.nsnam.org .

Python bindings & manual building are disabled by default but you can
override it.
 2018-04-06 13:54:20 +09:00
Daiderd Jordan
a378141684
caffe2: mark linux only 2018-04-05 20:05:18 +02:00
Tuomas Tynkkynen
747ebe3f66 Merge remote-tracking branch 'upstream/master' into staging 
Conflicts:
	pkgs/top-level/all-packages.nix
 2018-04-03 02:22:54 +03:00
Ryan Mulligan
85afb4e1e6 petsc: 3.8.3 -> 3.8.4 
Semi-automatic update generated by https://github.com/ryantm/nix-update tools.

This update was made based on information from https://repology.org/metapackage/petsc/versions.

These checks were done:

- built on NixOS
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff -h` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff --help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -V` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -v` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --version` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py version` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -h` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/sendToJenkins -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/sendToJenkins --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py help` got 0 exit code
- found 3.8.4 with grep in /nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4
- found 3.8.4 in filename of file in /nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4
- directory tree listing: https://gist.github.com/da90b8c44c7ed274deb2e1a2c7de8dad
 2018-03-28 00:48:35 -07:00
Shea Levy
d0a8866622
Merge branch 'binutils-2.30' into staging 2018-03-22 07:28:10 -04:00
Shea Levy
5ce31aa6b7
Revert "atlas: 3.10.2 -> 3.10.3" 
3.10.3 segfaults with glibc 2.27, and since it was fairly recently
added via autoupdate hopefully it's not too strongly needed yet.

This reverts commit 4c28d80be2.
 2018-03-20 17:21:20 -04:00
Will Dietz
161253f0e0
Merge pull request #37047 from dtzWill/fix/openblas-numpy-musl 
openblas, numpy: fix w/musl
 2018-03-19 13:39:24 -05:00
Ryan Mulligan
4c28d80be2 atlas: 3.10.2 -> 3.10.3 
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/79z1zd6ydm6b7x6xbf8b908iirah8hqn-atlas-3.10.3
 2018-03-16 01:31:41 -07:00
Will Dietz
837538da43 openblas: don't build w/openmp on musl 2018-03-15 18:27:22 -05:00
Joachim F
6ae3aa1560
Merge pull request #36640 from ryantm/auto-update/openlibm 
openlibm: 0.5.4 -> 0.5.5
 2018-03-14 21:13:44 +00:00
Josef Kemetmüller
edef344458 petsc: fix darwin build 2018-03-12 00:20:18 +01:00
Yuri Aisaka
e559fa19f3 fix compilation on gcc7 2018-03-09 22:34:25 +09:00
Ryan Mulligan
724667fa3f openlibm: 0.5.4 -> 0.5.5 
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 0.5.5 with grep in /nix/store/im5hsldagl6la2yf5s8rsnv2w57mb76m-openlibm-0.5.5
- found 0.5.5 in filename of file in /nix/store/im5hsldagl6la2yf5s8rsnv2w57mb76m-openlibm-0.5.5
 2018-03-09 05:10:28 -08:00
Ryan Mulligan
1aa5bb44ca blas: 3.7.1 -> 3.8.0 
Semi-automatic update. These checks were performed:

- built on NixOS
- found 3.8.0 in filename of file in /nix/store/6j28cb5b114fxj7x7wpwv8mdbiqxq1fj-blas-3.8.0
 2018-03-04 18:51:48 +00:00
Anders Kaseorg
6f073154da Give working advice for running nix-prefetch-url 
nix-prefetch-url file://… requires a full path.  Suggest an invocation
that will provide one.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2018-03-04 17:28:36 +00:00
Ryan Mulligan
6eecefbfbe petsc: 3.7.6 -> 3.8.3 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -V` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -v` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --version` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py version` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins --help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff --help` and found version 3.8.3
- found 3.8.3 with grep in /nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3
 2018-03-03 11:03:57 +00:00
Ryan Mulligan
d3a20a674c openspecfun: 0.4 -> 0.5.3 
Semi-automatic update. These checks were performed:

- built on NixOS
- found 0.5.3 in filename of file in /nix/store/yqsgs9hw8c3rdia75rswgk98lz3c52ih-openspecfun-0.5.3

cc "@ttuegel"
 2018-02-27 09:02:15 -08:00
Nikolay Amiantov
41abde91ce nccl: 1.2.4-1 -> 2.1.4 
It's closed source now.
 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
e77d2106bf ipopt: 3.12.8 -> 3.12.9 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
efe836160f cudatoolkit: 9.0.176 -> 9.1.85.1 2018-02-25 22:24:09 +03:00
Yuri Aisaka
f8c48908f7 caffe2: init at 0.8.1 (#34956) 2018-02-16 15:09:40 +00:00
Will Dietz
8dfe068f86 openblas: patch to fix on non-glibc 2018-02-13 09:44:48 -06:00
Will Dietz
c8081971f4 openblas: NO_AFFINITY=1 fix for musl 2018-02-13 09:44:48 -06:00
Renato Alves
b2284e0454
htslib: 1.6 -> 1.7 2018-02-06 15:37:50 +01:00
Markus Kowalewski
a16880533f arpack: remove FFLAGS 2018-01-22 15:52:57 -08:00
Markus Kowalewski
eb30d65de6 arpack: 3.3.0 -> 3.5.0 2018-01-22 15:36:43 -08:00
Tuomas Tynkkynen
722295fc15 openblas: Support ARMv6 2017-12-30 00:19:57 +02:00
hyphon81
05573d3e06
nccl: init at 1.3.4-1 2017-12-28 17:46:52 +01:00
Orivej Desh
4de81540df
Merge pull request #32427 from TravisWhitaker/cudnn 
cuDNN 7.0.3 -> 7.0.5
 2017-12-17 04:25:42 +00:00
georgewhewell
73b65551f4 openblas: add aarch64 platform config 2017-12-11 19:22:07 +02:00
Travis Whitaker
777c9bfdae cuDNN 7.0.3 -> 7.0.5 2017-12-07 15:13:07 -08:00
Orivej Desh
45cf0b0da4 fenics: restrict to Darwin 
It has never been building on Linux.
 2017-12-01 07:17:15 +00:00
Orivej Desh
4d50d79bc8 atlas: disable parallel building 2017-11-22 06:49:21 +00:00
Orivej Desh
d5e3935a6a atlas: enable parallel building 2017-11-21 19:29:10 +00:00
Nikolay Amiantov
77046bed8a cudnn7: 7.0 -> 7.0.3 2017-10-28 17:39:59 +03:00
Nikolay Amiantov
50a223b144 clblas: 20160505 -> 2.12 2017-10-19 12:47:30 +03:00
Nikolay Amiantov
6309e5fa01 cudnn: refactor to use shared derivation 
Also return 8.0-6.0 version for TensorFlow.
 2017-10-19 12:47:30 +03:00
Nikolay Amiantov
ce9059a120 cudnn_cudatoolkit9: init at 7.0 
Make it the default.
 2017-10-19 12:47:30 +03:00
Orivej Desh
047c576353 Merge pull request #29963 from mimadrid/update/samtools-1.6.0 
samtools: 1.5.0 -> 1.6.0
 2017-10-02 01:07:11 +00:00
Orivej Desh
0acf94bb9f htslib: fix up 2017-10-01 07:12:52 +00:00
mimadrid
25b17ae1d7
htslib: 1.5.0 -> 1.6.0 2017-09-30 22:14:49 +02:00
Nikolay Amiantov
098c6825e0 blas: 3.5.0 -> 3.7.1 2017-09-25 22:46:44 +03:00
Jörg Thalheim
aab8f8df4b nifticlib: use mirror for sourceforge 2017-09-21 09:10:12 +01:00
Ben Darwin
0d981c5761 nifticlib: init at 2.0.0 2017-09-20 19:04:22 -04:00
John Ericson
8fccaa284d Merge pull request #29282 from obsidiansystems/soext 
lib, treewide: Add `*Platform.extensions` and use it where possible
 2017-09-13 11:20:06 -04:00
John Ericson
5aec3f96a2 treewide: Use *Platform.extensions 2017-09-13 11:16:10 -04:00
Jean-Philippe Bernardy
1ba197f225 make my maintainer handle match my github username 2017-09-12 15:17:18 +02:00
Jean-Philippe Bernardy
d51bd36646 cudnn: add 6.0 2017-09-07 09:28:03 +02:00
jamtrott
c8c0cd4d6c petsc: init at 3.7.6 (#28368) 
* petsc: init at 3.7.6

* petsc: use configureFlagsArray

* petsc: Remove unneeded binaries
 2017-09-03 17:11:16 +01:00
James D. Trotter
518fb60797 fenics: init at 2017.1.0 2017-08-15 16:19:45 +02:00
Frederik Rietdijk
b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0 
samtools: 1.4.0 -> 1.5.0
 2017-08-13 22:32:48 +02:00
mimadrid
302e7825fa
htslib: 1.4.0 -> 1.5.0 2017-08-13 00:16:42 +02:00
mimadrid
09e0cc7cc7
Update homepage attributes: http -> https 
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
 2017-08-03 11:56:15 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
Frederik Rietdijk
ec59e3b3f5 openblas: 0.2.19 -> 0.2.20 2017-07-28 18:08:06 +02:00
Nikolay Amiantov
5fdc1e763f ipopt: 3.12.6 -> 2.12.8 2017-07-27 17:07:44 +03:00
Ben Darwin
d1d0824b2f elastix: change platforms to "linux" from "unix" 2017-07-19 17:41:14 -04:00
Ben Darwin
b21805d972 elastix: init at 4.8 2017-05-23 18:25:15 -04:00
Tyson Whitehead
8fdbc828b9
clblas-cuda: requires ocl-icd now for libOpenCL.so.1 #25902 2017-05-18 18:32:09 -04:00
Jörg Thalheim
be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4 
Update/htslib 1.4
 2017-05-11 07:08:56 +01:00
mimadrid
295a23a2db
htslib: 1.3.2 -> 1.4 2017-05-07 23:15:42 +02:00
Daiderd Jordan
f240276000
blas: fix darwin library id 2017-04-27 23:25:07 +02:00
Vladimír Čunát
6617c8bd87
A fixed version of commit eb750f9a7b 
For detailed explanation see:
https://github.com/NixOS/nixpkgs/commit/24444513fb5#commitcomment-21767916
 2017-04-14 18:59:36 +02:00
Joachim Fasting
540a6412e3
suitesparse_4_4: NIX_CFLAGS -> NIX_CFLAGS_COMPILE 
Tested with nix-build -A suitesparse_4_4
 2017-04-12 19:27:03 +02:00
Joachim Fasting
a883581ddb
suitesparse_4_2: remove bogus NIX_CFLAGS 
NIX_CFLAGS should be NIX_CFLAGS_COMPILE; since pic is the default, we
simply remove the bogus declaration.

Tested with nix-build -A suitesparse_4_2
 2017-04-12 19:26:58 +02:00
Frederik Rietdijk
767e459200 Merge pull request #22726 from matthewbauer/openblas-closure-size 
openblas: disable static libs
 2017-04-10 16:11:19 +02:00
Matthew Daiter
d712c04d25 suitesparse: refining CUDA support 2017-04-04 17:23:20 +02:00
Matthew Daiter
6f721ce534 suitesparse: add CUDA support 2017-03-29 15:47:51 +02:00
Matthew Bauer
bd8654f45d openblas: disable static libs 
Disable static on openblas. This should save about 57M from closure sizes.
 2017-02-12 18:45:44 -06:00
Matthew Daiter
82835f7eb3 cudnn51_cudatoolkit80: hash change 2017-02-08 18:40:32 +01:00
Anthony Cowley
084a76ef6f atlas: change platforms to unix 
The build succeeds on darwin and linux.
 2017-01-10 21:02:04 -05:00
Robert Helgesson
2990cd8aea
clblas-cuda: use system gtest library 
Without this the build attempts to download the library.
 2016-12-28 12:21:07 +01:00
mimadrid
25c984f940
htslib: 1.3.1 -> 1.3.2 2016-12-23 19:31:44 -05:00
Thomas Tuegel
bed668c051
openblas: refactor and set TARGET always 2016-12-10 16:49:45 -06:00
Nikolay Amiantov
be95ceaff2 treewide: quote URLs in my packages 2016-11-24 01:17:52 +03:00
Matthew Daiter
3897b344f3 cudnn51_cudatoolkit80: Init at 5.1-8.0 2016-11-21 14:51:39 +01:00
Falco Peijnenburg
5f5f0614b0 Support for ARM in openblas 
Attempting to build openblas on ARM resulted in the error "unsopported system: armv7l_linux". This PR resolves that issue and some other issues that pop up when trying to build openblas for ARM.
 2016-11-18 12:44:49 +01:00
Matthew Daiter
541b3fc7d2 cudnn5_cudatoolkit80: adding to main repo 2016-11-07 12:07:29 +01:00
Daiderd Jordan
3187b01720 Merge pull request #19816 from veprbl/octave_fixes 
octave: darwin fix
 2016-11-05 10:49:33 +01:00
Frederik Rietdijk
7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Dmitry Kalinkin
a8eb57d953
openblas: silence warnings on darwin 
Without this one gets a lot of build time warnings like:

ld: warning: object file (/tmp/strip.2OzFn8) was built for newer OSX
version (10.9) than being linked (10.7)
 2016-10-23 21:19:14 -04:00
Thomas Tuegel
a58ec829e4
openblas: disable some hardening flags 2016-10-22 12:57:40 -05:00
Frederik Rietdijk
9b66b5c2cc liblapack: use python2 2016-10-18 23:16:05 +02:00
Thomas Tuegel
d94abcb157
openblas: 0.2.17 -> 0.2.19 2016-09-09 19:42:54 -05:00
Michael Raskin
6b075ee8b1 openlibm: 0.4.1 -> 0.5.4 2016-09-06 19:31:38 +02:00
obadz
0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen
a18ee4acb7 treewide: Make explicit that 'dev' output of boost is used 
Also fix one incorrect output in geant.
 2016-08-23 04:32:21 +03:00
Tuomas Tynkkynen
d3705faa56 treewide: Use makeLibraryPath in LD_LIBRARY_PATHs 2016-08-23 00:14:00 +03:00
Robin Gloster
33e1c78ae3 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-16 07:54:01 +00:00
Nikolay Amiantov
0464600859 ipopt: 3.12.4 -> 3.12.6 2016-08-14 22:37:08 +03:00
Robin Gloster
1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen
21f17d69f6 treewide: Add lots of meta.platforms 
Build-tested on x86_64 Linux & Mac.
 2016-08-02 21:42:43 +03:00
Robin Gloster
1f04b4a566 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-21 00:56:43 +00:00
Josef Kemetmueller
f3dc4d9ec3 superlu: init at 5.2.1 2016-07-19 12:37:08 +00:00
Franz Pletz
f597e97236 atlas: Fix hardening 2016-07-13 19:30:52 +02:00
Franz Pletz
26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Joachim Fasting
46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1 
bcftools: init at 1.3.1
 2016-06-24 22:15:51 +02:00
mimadrid
d3da5cbf44
htslib: init at 1.3.1 2016-06-24 21:08:16 +02:00
artuuge
465d6a2113 Theano-cuda: init at 0.8.2 2016-06-20 01:06:07 +02:00
Robin Gloster
8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
artuuge
5b51f0bff9 clblas-cuda: init at git-20160505 2016-06-05 14:33:19 +02:00
Ian-Woo Kim
ff8985e7ab cudnn: add cudatoolkit to propagatedBuildInputs 2016-06-02 19:33:03 +02:00
Robin Gloster
2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Arseniy Seroka
c6b3aca4e2 Merge pull request #15654 from wavewave/magma 
magma: init at 2.0.2
 2016-05-26 01:02:14 +03:00
Ian-Woo Kim
e47070ad64 cudnn: init at 4.0 2016-05-25 18:26:57 +00:00
Ian-Woo Kim
fd42fccd4c magma: init at 2.0.2 2016-05-25 18:14:41 +00:00
Franz Pletz
f8d481754c
Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-05-18 17:10:02 +02:00
Peter Simons
8e462995ba Bring my stdenv.lib.maintainers user name in line with my github nick. 2016-05-16 22:49:55 +02:00
Evgeny Egorochkin
4b979eef29 atlas: put the name suffix where it belongs 2016-05-16 10:19:38 +03:00
Robin Gloster
d020caa5b2 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-18 13:49:22 +00:00
=
9ec9da1a24 iSpike: init at 2.1.1 2016-04-12 14:36:20 +02:00
Robin Gloster
696d85a62d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-03 11:01:57 +00:00
Frederik Rietdijk
4bd01c5cbd openblas_2_14: remove 
because we don't need it for numpy anymore.
 2016-03-31 21:51:45 +02:00
Franz Pletz
2e08d8234e Merge remote-tracking branch 'origin/master' 2016-03-31 10:06:30 +02:00
Frederik Rietdijk
c1abb1d404 openblas: 0.2.15 -> 0.2.17 2016-03-28 15:58:10 +02:00
Robin Gloster
3f45f0948d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-15 01:44:24 +00:00
Anthony Cowley
f3a6f3e2f3 suitesparse: build dylibs on darwin 
Makes the shared libraries usable on darwin so that, e.g., the Julia
compiler may be built.
 2016-03-13 04:13:26 -04:00
Anthony Cowley
9d1053dc6d suitesparse: darwin compatibility 
There is no librt on darwin, so it must be disabled.
 2016-03-12 21:17:15 -05:00
Robin Gloster
5969a59052 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-02-09 16:28:44 +00:00
Frederik Rietdijk
3e476a73ef openblas_2_14: init at 0.2.14 2016-02-08 20:33:31 +01:00
Robin Gloster
acb408646e remove local pic flags, now set by hardened stdenv 2016-01-30 16:36:57 +00:00
Thomas Tuegel
36a08ce5a0 arpack: 3.2.0 -> 3.3.0 2015-12-28 11:44:03 -06:00