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1116 Commits

Author SHA1 Message Date
mimadrid
d91d245f16
bcftools: init at 1.3.1 2016-06-24 21:08:17 +02:00
mimadrid
14feec44e4
samtools: refactoring 2016-06-24 21:08:17 +02:00
Vladimír Čunát
6b27ceb006 Merge 'master' into staging and re-revert merge 
... from staging to master, reverted temporarily in aa9a04883e.
 2016-06-23 12:09:03 +02:00
Vladimír Čunát
aa9a04883e Revert "Merge branch 'staging'" due to glibc 
The main output started to retain dependency on bootstrap-tools; see
https://github.com/NixOS/nixpkgs/pull/15867#issuecomment-227949096

This reverts commit c05d829598, reversing
changes made to f073df60d6.
 2016-06-23 09:25:10 +02:00
Vladimír Čunát
c05d829598 Merge branch 'staging' 2016-06-22 10:49:56 +02:00
Gabriel Ebner
0a8e613cea aspino: init at 2016-01-31 2016-06-21 13:55:28 +02:00
Gabriel Ebner
8f84a5cb08 glucose, glucose-syrup: init at 4.0 2016-06-21 13:26:51 +02:00
Gabriel Ebner
9c5588e99f spass: 3.7 -> 3.9 2016-06-21 08:18:20 +02:00
Michael Raskin
ca495a53a5 tptp: fix hash 2016-06-20 18:38:08 +02:00
Bjørn Forsman
bd01fad0ed Captialize meta.description of all packages 
In line with the Nixpkgs manual.

A mechanical change, done with this command:

  find pkgs -name "*.nix" | \
      while read f; do \
          sed -e 's/description\s*=\s*"\([a-z]\)/description = "\u\1/' -i "$f"; \
      done

I manually skipped some:

* Descriptions starting with an abbreviation, a user name or package name
* Frequently generated expressions (haskell-packages.nix)
 2016-06-20 13:55:52 +02:00
Gabriel Ebner
727716cd82 speedcrunch: 0.11-alpha -> 0.11 2016-06-19 18:45:04 +02:00
Gabriel Ebner
e5b3b685f4 libqalculate, qalculate-gtk: 0.9.7 -> 0.9.8 2016-06-19 17:33:45 +02:00
Gabriel Ebner
cc0b3bbcc2 minisat: support clang 2016-06-19 15:19:25 +02:00
Vladimír Čunát
e757404555 Merge branch 'master' into staging 
Hydra nixpkgs: ?compare=1279790
 2016-06-19 12:33:04 +02:00
Vladimír Čunát
97c484a10f treewide: fix #include errors after gcc-5.4 
They were mostly missing <cmath> or <math.h>.
 2016-06-19 10:18:30 +02:00
mimadrid
aa8eba9d95
weka: 3.6.12 -> 3.8.0 
Closes #16055
 2016-06-16 15:47:48 +02:00
mimadrid
9b7a53d9cb
cytoscape: init at 3.4.0 
Closes #16197
 2016-06-16 15:47:21 +02:00
Robin Gloster
8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
Christopher Lübbemeier
ac4903284c gmsh: init at 2.12.0 2016-06-09 18:54:26 +02:00
Vincent Laporte
a577b3666e why3: 0.87.0 -> 0.87.1 2016-06-09 09:51:38 +02:00
Luis Pedro Coelho
bd617cb185 init bwa at 0.7.15 
Closes #16064
 2016-06-08 17:25:20 +01:00
Tuomas Tynkkynen
f1d83444a5 openmodelica: Use makeLibraryPath 2016-06-07 21:18:02 +03:00
Joachim Fasting
e65698db0b Merge pull request #15939 from ChrisJefferson/fix-gap 
gap : 4.4.12 -> 4.8.3
 2016-06-04 01:14:09 +02:00
Chris Jefferson
75f793bbb2 gap : 4.4.12 -> 4.8.3 2016-06-03 19:01:12 +01:00
Tuomas Tynkkynen
bac26e08db Fix lots of fetchgit hashes (fallout from #15469) 2016-06-03 17:17:08 +03:00
Robin Gloster
2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Nikolay Amiantov
51f479465c qgroundcontrol: fix build 2016-05-29 19:51:22 +03:00
Moritz Ulrich
7b2fab05f3 Merge pull request #15606 from dvc94ch/fpga-toolchain-updates 
FPGA toolchain updates
 2016-05-28 15:41:10 +02:00
Vladimír Čunát
e4832c7541 Merge branch 'staging' 
Includes a security update of libxml2.
 2016-05-27 15:58:40 +02:00
Vladimír Čunát
81039713fa Merge branch 'master' into staging 
... to get the systemd update (rebuilding ~7k jobs).
 2016-05-26 16:50:22 +02:00
Vladimír Čunát
ee1a10ee6b Revert "root: enable parallel building" 
This reverts commit 2991fdca52.
Hydra builds often report missing various files.
 2016-05-26 16:27:59 +02:00
Tobias Geerinckx-Rice
dce1edf946
samtools: 1.3 -> 1.3.1 2016-05-25 02:06:47 +02:00
Nicolò Balzarotti
c1c0c99af3 yarp: 2.3.64 -> 2.3.65 (#15662) 2016-05-24 13:30:52 +02:00
David Craven
509ce20ded verilog: 0.97 -> 2016.05.21 2016-05-22 07:38:57 +02:00
David Craven
ce3d510d90 verilator: 3.874 -> 3.884 2016-05-22 07:38:57 +02:00
Tuomas Tynkkynen
8d473f107c treewide: Make explicit that 'dev' output of readline is used 2016-05-19 10:03:35 +02:00
Tuomas Tynkkynen
47c45e2041 treewide: Make explicit that 'dev' output of gmp is used 2016-05-19 10:00:36 +02:00
Tuomas Tynkkynen
85a51074dc treewide: Make explicit that 'dev' output of atk is used 2016-05-19 10:00:25 +02:00
Franz Pletz
f8d481754c
Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-05-18 17:10:02 +02:00
Peter Simons
8e462995ba Bring my stdenv.lib.maintainers user name in line with my github nick. 2016-05-16 22:49:55 +02:00
Vladimír Čunát
6c2fbfbd77 Merge branch 'master' into staging 2016-05-12 04:53:38 +02:00
Bjørn Forsman
300e495101 sigrok: update whole suite to latest (2016-01) 
Release announcement, 2016-01-30:
https://www.sigrok.org/blog/major-sigrok-releases-libsigrok-libsigrokdecode-sigrok-cli-pulseview

I first tried updating the projects in separate commits. But later I
found cyclic dependencies, that would break git bisect, so I ended up
squashing the commits:

* libsigrok: 0.3.0 -> 0.4.0
  Enable building libsigrokcxx.so, the C++ bindings for libsigrok, by
  adding doxygen, glibmm and python as build deps. This is needed for
  Pulseview >= 0.3.0. Also update the firmware (sigrok-firmware-fx2lafw)
  while at it.

* libsigrokdecode: 0.3.0 -> 0.4.0

* sigrok-cli: 0.5.0 -> 0.6.0

* pulseview: 0.2.0 -> 0.3.0
  New dependency: glibmm (due to libsigrokcxx.pc from libsigrok).

Note that collectd is incompatible with the new libsigrok release, so
I let it use the old one (0.3.0).
 2016-05-11 22:23:29 +02:00
Eelco Dolstra
7ce5d43c63 Fix some URLs that lacked a URI scheme 2016-05-09 19:35:05 +02:00
Vladimír Čunát
65a9fa8cdc Merge branch 'master' into staging 2016-05-08 21:24:48 +02:00
Gabriel Ebner
516f331227 minisat: migrate from builderDefsPackage to mkDerivation 2016-05-08 15:32:58 +02:00
Gabriel Ebner
3f19d757cb veriT: disable broken static linking 2016-05-08 15:11:29 +02:00
Vladimír Čunát
1dc36904d8 Merge #14920: windows improvements, mainly mingw 2016-05-05 08:30:19 +02:00
Joachim Fasting
35efc53274 Merge pull request #15214 from taku0/lp_solve_isnan 
lp_solve: fixed build error due to defining isnan
 2016-05-04 20:55:51 +02:00
taku0
f2bab58b3e lp_solve: change source URL to mirror 2016-05-04 22:17:56 +09:00
taku0
3fa49d5ac4 lp_solve: updated description 2016-05-04 22:03:22 +09:00
taku0
725c85c720 lp_solve: fixed build error due to defining isnan 2016-05-04 19:58:05 +09:00
Tuomas Tynkkynen
aadaa91379 Merge remote-tracking branch 'upstream/master' into staging 
Conflicts:
	pkgs/applications/networking/browsers/vivaldi/default.nix
	pkgs/misc/emulators/wine/base.nix
 2016-05-03 23:12:48 +03:00
Robin Gloster
c92bca56f8 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-02 22:58:02 +00:00
Vincent Laporte
60a7c607d1 hol-light: fix build with camlp5-6.16 2016-05-01 16:10:09 +02:00
Nikolay Amiantov
87ebab128a replace ${stdenv.cc.cc}/lib occurences 2016-05-01 00:13:23 +03:00
Tuomas Tynkkynen
4ff8f377af Merge remote-tracking branch 'upstream/master' into staging 2016-04-28 00:13:53 +03:00
Tuomas Tynkkynen
ca0e724266 otter: Mark broken 
Build hangs an hits the hydra time limit:
http://hydra.nixos.org/build/34897110
 2016-04-27 03:24:04 +03:00
Edward Tjörnhammar
f027aa2059
jonprl: corrected sha change 2016-04-26 22:23:37 +02:00
Frederik Rietdijk
d5e6a4494a Python: use PyPI mirror (#15001) 
* mirrors: add pypi

* Python: Use pypi mirror for all PyPI packages
 2016-04-26 13:38:03 +01:00
Dmitry Kalinkin
088601cb51 root: fix chrooted build, workaround 491f7f017c (cmake: set LIBDIR and INCLUDEDIR for multiple outputs) 2016-04-25 17:38:19 -04:00
Nikolay Amiantov
ab0a0c004e makeSearchPathOutputs: refactor to makeSearchPathOutput 2016-04-25 13:24:39 +03:00
Vladimír Čunát
e9379f7416 Merge branch 'staging' 
This includes a fix to closure-size regression that moved
share/doc/*/ to share/doc/
 2016-04-22 16:49:09 +02:00
Vincent Laporte
71e0ce571b csdp: fix build on Darwin 
When the `INSTALL` file is present, `make` claims that the `install`
target is up-to-date.
 2016-04-22 11:53:43 +02:00
Nikolay Amiantov
fb2c651647 qgroundcontrol: move to qmakeHook 
This reverts commit 11294eaf16.
 2016-04-20 18:55:48 +03:00
Nikolay Amiantov
0b88755d37 fritzing: move to qmakeHook 
This reverts commit 81fc546df3.
 2016-04-20 18:55:47 +03:00
Dmitry Kalinkin
f2200369e5 root: fix NixOS build, build with lzma from nix, update homepage url 2016-04-20 01:41:46 -04:00
Robin Gloster
d020caa5b2 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-18 13:49:22 +00:00
Dmitry Kalinkin
baded4ea96 root: 5.34.15 -> 6.04.16 2016-04-17 22:59:31 -04:00
aszlig
11294eaf16
qgroundcontrol: Fix running of {pre,post}Configure 
Commit 0055c6a introduced a new preConfigure hook that sets the right
qmake path. Unfortunately the mkDerivation attributes of qgroundcontrol
override the whole configurePhase, so this hook isn't run at all.

Instead of using pushd/popd, I'm making it a bit more readable by just
spawning a subshell with the right working directory.

This fixes the build of qgroundcontrol and it now successfully compiles
on my machine.

Signed-off-by: aszlig <aszlig@redmoonstudios.org>
 2016-04-15 05:26:02 +02:00
aszlig
01900ac06e
qgroundcontrol: Drop unused preConfigure phase 
The configurePhase is overridden here and the preConfigure hook isn't
referenced otherwise in the package, so it's basically dead code.

Signed-off-by: aszlig <aszlig@redmoonstudios.org>
 2016-04-15 05:26:02 +02:00
aszlig
81fc546df3
fritzing: Fix running of {pre,post}Configure 
Commit 0055c6a introduced a new preConfigure hook that sets the right
qmake path. Unfortunately the mkDerivation attributes of fritzing
override the whole configurePhase, so this hook isn't run at all.

This fixes the build of fritzing and it now successfully compiles on my
machine.

Signed-off-by: aszlig <aszlig@redmoonstudios.org>
 2016-04-15 05:26:02 +02:00
Nikolay Amiantov
6f3e72eef6 Merge pull request #14658 from abbradar/search-path-fixes 
Search path fixes
 2016-04-14 03:08:41 +04:00
Arseniy Seroka
0420a532e9 Merge pull request #14649 from vbgl/coq_8.5.1 
Coq 8.5pl1
 2016-04-13 22:16:48 +03:00
Nikolay Amiantov
8b7ebaffeb replace makeSearchPath tree-wise to take care of possible multiple outputs 2016-04-13 22:09:41 +03:00
Vladimír Čunát
39ebb01d6e Merge branch 'staging', containing closure-size #7701 2016-04-13 09:25:28 +02:00
joachifm
860aa01782 Merge pull request #14618 from moretea/update_mcrl2 
Update mcrl2
 2016-04-12 23:42:45 +02:00
Maarten Hoogendoorn
ec098aad41 mcrl2: 2009.01 -> 2014.09 2016-04-12 22:16:30 +02:00
Tuomas Tynkkynen
d7de8bc911 Merge pull request #14636 from kragniz/samtools 
samtools: init at 1.3
 2016-04-12 22:24:34 +03:00
Louis Taylor
70c1b2b1c0 samtools: init at 1.3 2016-04-12 20:13:40 +01:00
Vincent Laporte
a036fda544 coq: 8.5 -> 8.5pl1 2016-04-12 19:43:11 +02:00
Vladimír Čunát
30f14243c3 Merge branch 'master' into closure-size 
Comparison to master evaluations on Hydra:
  - 1255515 for nixos
  - 1255502 for nixpkgs
 2016-04-10 11:17:52 +02:00
Robin Gloster
3e68106afd Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-07 21:52:26 +00:00
Vladimír Čunát
d1df28f8e5 Merge 'staging' into closure-size 
This is mainly to get the update of bootstrap tools.
Otherwise there were mysterious segfaults:
https://github.com/NixOS/nixpkgs/pull/7701#issuecomment-203389817
 2016-04-07 14:40:51 +02:00
Damien Cassou
8f7d11e39c Merge pull request #14468 from vbgl/why3-0.87 
why3: 0.86.3 -> 0.87.0
 2016-04-05 19:15:52 +02:00
Vincent Laporte
9dfa26d2ce why3: 0.86.3 -> 0.87.0 2016-04-05 08:09:00 +02:00
Robin Gloster
bbbaccfa68 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-04 15:24:52 +00:00
Robin Gloster
025cedc606 singular.i686-linux: turn off stackprotector hardening 2016-04-03 12:25:05 +00:00
Robin Gloster
696d85a62d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-03 11:01:57 +00:00
Gabriel Ebner
e336cd003a picosat: enable proof output and install various utils 2016-04-02 18:45:47 +02:00
Gabriel Ebner
659c240be8 picosat: 960 -> 965 2016-04-02 18:43:32 +02:00
Chris Ostrouchov
a32d5d3755 lammps: init at 2016-02-16 2016-04-01 18:37:52 -04:00
Vladimír Čunát
ab15a62c68 Merge branch 'master' into closure-size 
Beware that stdenv doesn't build. It seems something more will be needed
than just resolution of merge conflicts.
 2016-04-01 10:06:01 +02:00
joachifm
0660ff5625 Merge pull request #14334 from ne0phyte/kicad-4.0.2 
kicad: 2013 stable -> 4.0.2
 2016-03-31 21:01:22 +00:00
Michael Raskin
011f69992a satallax: 1.4 -> 2.7 2016-03-31 16:23:08 +02:00
ne0phyte
cce37d2164 kicad: 2013 stable -> 4.0.2 2016-03-31 15:29:39 +02:00
Franz Pletz
2e08d8234e Merge remote-tracking branch 'origin/master' 2016-03-31 10:06:30 +02:00
Michael Raskin
016d523d82 cvc4: fix the build by skipping line markers in cpp expansions during configure, helps the configure script to find Boost version 2016-03-31 01:52:33 +02:00
joachifm
532beaa2a3 Merge pull request #13913 from grwlf/torch 
torch: add expression for Torch7 the machine-learning framework
 2016-03-30 14:29:32 +00:00
Robin Gloster
a4e65c3639 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-30 09:01:20 +00:00
Patrick Callahan
66b5055b95 gazebo: init at 6.5.1 and 7.0.0 2016-03-28 11:44:37 -07:00
Robin Gloster
f60c9df0ba Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-28 15:16:29 +00:00
Patrick Callahan
f30e40df69 qgroundcontrol: init at 2.9.4 2016-03-24 20:06:31 -07:00
Sergey Mironov
de4f541b0e torch: add unsup package 2016-03-22 22:20:45 +03:00
Sergey Mironov
56b34be001 torch: read user PATH and LD_LIBRARY_PATH 2016-03-22 00:57:30 +03:00
Sergey Mironov
6bb8f45182 torch: image, enable JPEG and PNG support 2016-03-22 00:38:52 +03:00
Sergey Mironov
4a36a0c504 torch: unhardcode references to luajit 2016-03-21 12:53:34 +03:00
Joachim Fasting
649c2cd027 lp_solve: mark as broken 
See https://hydra.nixos.org/build/32393768/log/raw
 2016-03-19 12:46:22 +01:00
Sergey Mironov
a56b9ab5be torch: use default luajit 2016-03-19 12:37:06 +03:00
Arseniy Seroka
1fb354d1ab Merge pull request #14008 from bzizou/scotch 
scotch: init at 6.0.4
 2016-03-18 22:50:20 +03:00
Bruno Bzeznik Bruno.Bzeznik@imag.fr
75af59f8eb scotch: init at 6.0.4 2016-03-18 10:54:41 +01:00
Sergey Mironov
1b05139414 torch: Read LUA_PATH and LUA_CPATH set by users 2016-03-16 23:53:46 +03:00
Sergey Mironov
f499f61c85 torch: don't use default value for src 2016-03-16 23:53:40 +03:00
Robin Gloster
3f45f0948d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-15 01:44:24 +00:00
Sergey Mironov
7f3b083610 torch: init at torch-git-2016-03-08 
Torch is a machine-learning framework written in Lua
 2016-03-14 16:05:55 +03:00
Nicolas B. Pierron
72c6f8a140 Ensure that we can evaluate the platform attribute of ocaml packages. 2016-03-13 19:08:26 +00:00
Thomas Tuegel
3ef7671cea ncurses: combine $lib and $out outputs 
The $lib output refers to the terminfo database in $out, which is about
10x larger than the ncurses shared library. Splitting these outputs
saves a small amount of space for any derivations that use the terminfo
database but not the ncurses library, but we do not have evidence that
any such exist.
 2016-03-08 11:35:24 -06:00
Vladimír Čunát
09af15654f Merge master into closure-size 
The kde-5 stuff still didn't merge well.
I hand-fixed what I saw, but there may be more problems.
 2016-03-08 09:58:19 +01:00
Franz Pletz
cb3d27df93 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-03-05 18:55:30 +01:00
Franz Pletz
aff1f4ab94 Use general hardening flag toggle lists 
The following parameters are now available:

  * hardeningDisable
    To disable specific hardening flags
  * hardeningEnable
    To enable specific hardening flags

Only the cc-wrapper supports this right now, but these may be reused by
other wrappers, builders or setup hooks.

cc-wrapper supports the following flags:

  * fortify
  * stackprotector
  * pie (disabled by default)
  * pic
  * strictoverflow
  * format
  * relro
  * bindnow
 2016-03-05 18:55:26 +01:00
Peter Simons
288d01fe2b stellarium: update to 0.14.2 
This patch also fixes https://github.com/NixOS/nixpkgs/issues/13582.
 2016-03-04 23:05:48 +01:00
Vincent Laporte
014a30da93 why3: 0.86.2 -> 0.86.3 
And merge with ocamlPackages.why3
(the OCaml library would not work correctly if packaged separately).
 2016-03-04 09:29:10 +01:00
Arseniy Seroka
0aac2960fc Merge pull request #13639 from bzizou/gromacs 
gromacs: 4.6.5 -> 4.6.7 + MPI support
 2016-03-03 23:29:32 +03:00
Robin Gloster
fed49425c5 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-03 16:11:55 +00:00
Vincent Laporte
c2a2c2ecd4 ltl2ba: fix build on darwin 2016-03-03 10:24:13 +01:00
Frederik Rietdijk
1d1b0a8ab8 Merge pull request #13510 from lancelotsix/relocate_motu_client 
pkgs.motuclient: move application away from pythonPackages
 2016-03-02 08:02:53 -05:00
Lluís Batlle i Rossell
a95e65b1eb gtkwave: update to 3.3.70 2016-03-02 12:42:20 +01:00
Lancelot SIX
8f4a7d6c4c pkgs.motuclient: move application away from pythonPackages 2016-03-02 09:41:02 +01:00
Robin Gloster
9ba6bd4dea caneda: disable format hardening 2016-03-01 22:09:15 +00:00
Robin Gloster
d47857c3d9 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-01 21:09:17 +00:00
Vincent Laporte
694a5ba291 eprover: fix build on Darwin 2016-02-29 15:35:40 +01:00
Robin Gloster
4f0608abdb perseus: disable stackprotector hardening 2016-02-29 12:51:28 +00:00
Robin Gloster
3b4765c9e5 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-02-28 16:32:57 +00:00
zimbatm
17348dc094 Remove all dots at end of descriptions 
Specially crafted for @JagaJaga

    find pkgs -name "*.nix" -exec \
      sed -e 's|\(description.*\)\.";|\1";|g' -i {} \;
 2016-02-27 17:30:29 +00:00
Robin Gloster
3477e662e6 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-02-27 00:08:08 +00:00
Franz Pletz
ef0325e940 Merge pull request #13435 from tg-x/calc 
calc: init at 2.12.5.3
 2016-02-26 11:16:11 +01:00
Franz Pletz
db2b0c8406 Merge pull request #13430 from nico202/yarp 
yarp (+ libace): init at 2.3.64
 2016-02-26 09:29:21 +01:00
tg(x)
1fb998f6c6 calc: init at 2.12.5.3 2016-02-24 22:47:55 +01:00
=
a5ed58445f yarp (+ libace): init at 2.3.64 2016-02-24 22:08:29 +01:00
Bruno Bzeznik Bruno.Bzeznik@imag.fr
14f3b8e6cc gromacs: 4.6.5 -> 4.6.7 + MPI support 2016-02-24 10:34:22 +01:00
Ben Darwin
69c628e1ff minc-tools: init at 2.3.00 2016-02-23 14:03:56 -05:00
Frederik Rietdijk
40ca841c5c Merge pull request #13124 from FRidh/buildPythonApplication 
buildPythonApplication: use new function for Python applications
 2016-02-23 16:02:10 +01:00
Gabriel Ebner
87b0a41ac5 isabelle: 2015 -> 2016 2016-02-23 14:19:13 +01:00
Robin Gloster
bb2639aafc Merge branch 'curl-7.15-fixup' of https://github.com/zimbatm/nixpkgs into hardened-stdenv 2016-02-22 01:14:22 +00:00
devresse
4046d3ce8d neuron: init at 7.4 2016-02-21 15:02:47 +00:00
Frederik Rietdijk
4d06bf70f4 buildPythonApplication: use new function for Python applications 2016-02-19 13:16:41 +01:00
Vladimír Čunát
d039c87984 Merge branch 'master' into closure-size 2016-02-14 08:33:51 +01:00
Robin Gloster
c572cc5159 qalculate-gtk: turn off format hardening 2016-02-12 16:16:52 +00:00
Robin Gloster
0ea02595f7 otter: turn off format hardening 2016-02-12 13:51:05 +00:00
Robin Gloster
0afc644cfd cbc: turn off format hardening 2016-02-09 01:35:33 +00:00
Robin Gloster
457f340785 prover9: turn off format hardening 2016-02-08 00:44:00 +00:00
Robin Gloster
5808bfb977 yacas: no format hardening 2016-02-07 22:51:21 +00:00
Robin Gloster
d117254822 drgeo: turn off format hardening 2016-02-07 20:54:52 +00:00
Robin Gloster
321c57d69e ltl2ba: turn off format hardening 2016-02-07 16:34:05 +00:00
Vladimír Čunát
ae74c356d9 Merge recent 'staging' into closure-size 
Let's get rid of those merge conflicts.
 2016-02-03 16:57:19 +01:00
Sven Keidel
ca21ae0eda isabelle: 2014 -> 2015 
Picked from #8510. /cc maintainer @jwiegley.
 2016-02-03 13:51:35 +01:00
Robin Gloster
8c91610cb2 content: remove 
Doesn't build and have been abandoned for years
 2016-01-30 20:31:05 +00:00
Gabriel Ebner
73468cf4d4 tptp: replace use of builderDefsPackage 2016-01-29 10:33:35 +01:00
Gabriel Ebner
462958b3b7 tptp: 6.1.0 -> 6.3.0 2016-01-29 09:37:11 +01:00
John Wiegley
5009b4a8cf coq_8_5: 8.5rc1 -> 8.5 2016-01-25 12:33:31 -08:00
Tobias Geerinckx-Rice
32d40f0f98 Remove no longer (or never) referenced patches 
55 files changed, 6041 deletions. Tested with `nix-build -A tarball`.
 2016-01-24 02:02:21 +01:00
Vladimír Čunát
0957359568 Merge branch 'staging' 2016-01-22 13:48:35 +01:00
Arseniy Seroka
f63db297d6 Merge pull request #12519 from gebner/metis-20160102 
metis-prover: 2.3.20160101 -> 2.3.20160102
 2016-01-21 18:39:57 +03:00
Ricardo M. Correia
194168b722 z3: 4.4.0 -> 4.4.1 2016-01-21 13:27:12 +01:00
Gabriel Ebner
d714963d1b metis-prover: 2.3.20160101 -> 2.3.20160102 2016-01-21 11:26:10 +01:00
Vladimír Čunát
716aac2519 Merge branch 'staging' into closure-size 2016-01-19 09:55:31 +01:00
Robin Gloster
53b389327e refactor to use autoreconfHook where possible 
Close #12446.
 2016-01-18 10:45:31 +01:00
Pascal Wittmann
ff837f9288 Merge pull request #12443 from gebner/lean-ninja 
lean: update and add wrapper for linja
 2016-01-17 20:00:16 +01:00
Mathieu Boespflug
545444cd19 R: add a new enableStrictBarrier package option. 
This option compiles R with --enable-strict-barrier. Doing so is
enables extra memory diagnostics in R that very useful for debugging
memory leak or memory protections issues in extensions to R written in
C, or for any apps embedding R (e.g. Haskell aps embedding R via
HaskellR).
 2016-01-17 11:09:05 +01:00
Gabriel Ebner
8a26d9b84f lean: add wrapper for linja 2016-01-17 09:29:18 +01:00
Gabriel Ebner
36c430de12 lean: 20150821 -> 20160117 2016-01-17 09:29:05 +01:00
Tobias Geerinckx-Rice
d1232049fb tkgate 2.x: remove dead package 
Broken since April 2014. Homepage leads to an expired domain.
 2016-01-14 23:55:47 +01:00
Vladimír Čunát
4858f3307e R: fix build after splitting gfortran.lib 
The extra flag was causing static libraries to be found (and used)
before dynamic ones. /cc #12085
 2016-01-12 23:57:48 +01:00
Asko Soukka
a225a650bf R: fix Darwin build 
Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.
 2016-01-06 22:20:40 +01:00
Vincent Laporte
fde89b6762 alt-ergo: also supported on Darwin 2016-01-04 17:17:44 +01:00
Gabriel Ebner
711e9e20de metis-prover: 2.3 -> 2.3.20160101 2016-01-02 16:04:03 +01:00
Michael Raskin
51f8932c8e pari (PARI/GP): 2.7.4 -> 2.7.5 2016-01-01 12:30:17 +03:00
Vladimír Čunát
f9f6f41bff Merge branch 'master' into closure-size 
TODO: there was more significant refactoring of qtbase and plasma 5.5
on master, and I'm deferring pointing to correct outputs to later.
 2015-12-31 09:53:02 +01:00
John Wiegley
d80aa87b13 coqPackages_8_5.coq: 8.5b2 -> 8.5rc1 2015-12-21 16:12:43 -08:00
Thomas Tuegel
541b2f20de fritzing: Qt 5 infrastructure update 2015-12-20 07:56:50 -06:00
Arseniy Seroka
330afe9f4e Merge pull request #11075 from mogorman/pcb 
pcb: new package
 2015-12-17 09:13:54 +03:00
Matthew O'Gorman
09aff6c104
pcb: init at 20140316 2015-12-16 19:29:17 -05:00
Pascal Wittmann
f45b8176c0 Merge pull request #11074 from mogorman/gerbv 
gerbv: new package
 2015-12-16 18:13:20 +01:00
Matthew O'Gorman
a76241c6cb
gerbv: init at git-2015-10-07 2015-12-15 21:11:54 -05:00
Pascal Wittmann
84c3b5f71f Merge pull request #11073 from mogorman/geda_fix 
geda: refdes_renum called /usr/bin/perl
 2015-12-14 07:56:41 +01:00
Matthew O'Gorman
f076a0867f
geda: refdes_renum called /usr/bin/perl 2015-12-14 00:04:12 -05:00
Luca Bruno
5b0352a6a4 Merge branch 'master' into closure-size 2015-12-11 18:31:00 +01:00
Michel Kuhlmann
cebbb18e9e R: 3.2.2 -> 3.2.3 2015-12-11 11:36:30 +01:00
Bjørn Forsman
c27de52d39 eagle: 6.6.0 -> 7.5.0 
* It grew a couple of extra (hard) dependencies:
  libxcb, cups, xkeyboardconfig
* It is also available in native 64-bit version (yay!)
 2015-12-08 22:30:10 +01:00
Frederik Rietdijk
4ff3787adb python spyder: 2.3.7 -> 2.3.8 2015-12-01 20:23:42 +01:00
Vincent Laporte
38eb17c2e2 why3: 0.86.1 -> 0.86.2 2015-12-01 11:04:08 +01:00
Aristid Breitkreuz
158e4ffd9c mathematica package patchPhase does not like set -e 2015-11-30 21:08:30 +01:00
Luca Bruno
920b1d3591 Merge branch 'master' into closure-size 2015-11-29 16:50:26 +01:00
Arseniy Seroka
c6932509b8 Merge pull request #11302 from fkz/sad 
add package: system for automated deduction
 2015-11-27 22:25:44 +03:00
Fabian Schmitthenner
dc164dc2ee system for automated deduction: init at 2.3-25 2015-11-27 15:12:09 +00:00
Domen Kožar
67e03d0c50 Merge branch 'buildPythonPackage+wheels' 2015-11-26 17:38:35 +01:00
John Wiegley
2b8ef119c5 Revert "coq: 8.5b2 -> 8.5b3" 
This reverts commit c111b0cd4d.

@oconnorr I will restore this once there is more ecosystem to support it.
 2015-11-25 12:58:07 -08:00
Luca Bruno
a412927924 Merge remote-tracking branch 'origin/master' into closure-size 2015-11-25 21:37:30 +01:00
Nikolay Amiantov
5ee5b5ba82 R: add curl for https support 2015-11-25 11:39:28 +01:00
Joachim Fasting
6d4ff90207 gap: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting
4229525eac spass: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting
0a4e12c0e2 opensmt: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting
c6d645803a iprover: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting
a228252b69 cvc3: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting
022bbe1c0c singular: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Joachim Fasting
42fc03411f drgeo: reimplement using mkDerivation 2015-11-24 14:45:15 +01:00
Domen Kožar
4b23328e39 buildPythonPackage: fix more wheels failures 2015-11-21 21:44:12 +01:00
Vladimír Čunát
333d69a5f0 Merge staging into closure-size 
The most complex problems were from dealing with switches reverted in
the meantime (gcc5, gmp6, ncurses6).
It's likely that darwin is (still) broken nontrivially.
 2015-11-20 14:32:58 +01:00
Russell O'Connor
c111b0cd4d coq: 8.5b2 -> 8.5b3 2015-11-19 00:10:22 -05:00
Pascal Wittmann
7fd2796e99 Replace 'with plaforms; platform' with 'platforms.platform' 2015-11-17 21:30:43 +01:00
Marco Maggesi
a487b3326b Update HOL Light to version 2015-11-02 2015-11-03 15:24:56 +01:00
Vladimír Čunát
fd1619cf60 yices: use correct static gmp 
It still won't build due to trying to use /sbin/ldconfig,
but gmp-related things do seem OK.
 2015-10-28 11:50:05 +01:00
Vladimír Čunát
148e03b2f1 gmp: split into multiple outputs 2015-10-28 10:15:49 +01:00
Vladimír Čunát
cba6641623 cairo, pango: fix some string references 2015-10-13 20:18:51 +02:00
Vladimír Čunát
91407a8bdf ncurses: split into multiple outputs 
Some programs (e.g. tput) might better be moved somewhere else than
$dev/bin, but that can be improved later if need be.
 2015-10-13 20:18:44 +02:00
Vladimír Čunát
f8c211fd2b fontconfig: split into multiple outputs 
Fixed all 'fontconfig}' references as well, hopefully, ugh!
 2015-10-05 12:23:56 +02:00
Vladimír Čunát
5227fb1dd5 Merge commit staging+systemd into closure-size 
Many non-conflict problems weren't (fully) resolved in this commit yet.
 2015-10-03 13:33:37 +02:00
Karn Kallio
87b75c33ce R: advance to version 3.2.2. 
A test failing without recommended packages has been patched.
 2015-10-02 22:15:14 +02:00
Peter Simons
ccd3e52b60 Merge pull request #9917 from FlorentBecker/sage 
Update sage to 6.8
 2015-09-30 17:28:36 +02:00
Vincent Laporte
9a1245280d hol_light: add support for camlp5 > 6.12 2015-09-23 19:04:51 +02:00
Vladimír Čunát
76ef7a93e3 Merge: xlibs and x11 attribute cleanup 
Frequently using multiple *almost* identical attributes is bad.
 2015-09-23 10:42:34 +02:00
Florent Becker
b860b106c5 sage: 6.1.1 -> 6.8 2015-09-22 09:01:33 +00:00
Gabriel Ebner
5493dccfbb metis-prover: init at 2.3 2015-09-21 21:42:20 +02:00
Erik Rybakken
64c1a9a2e2 perseus: init at 4-beta 2015-09-19 00:56:24 +02:00
William A. Kennington III
773b4deb7c Merge commit 'a6f6c0e' into master.upstream 
This is a partial merge of staging where we have up to date binaries for
all packages.
 2015-09-15 12:16:49 -07:00
Vladimír Čunát
88c9f8b574 xlibs: replace occurrences by xorg 
This seems to have been confusing people, using both xlibs and xorg, etc.
- Avoided renaming local (and different) xlibs binding in gcc*.
- Fixed cases where both xorg and xlibs were used.
Hopefully everything still works as before.
 2015-09-15 12:54:34 +02:00
Vladimír Čunát
21e3ff658a x11: replace its usage by xlibsWrapper directly 
Scilab note: the parameters already had pointed to nonexistent dirs
before this set of refactoring. But that config wasn't even used by
default.
 2015-09-15 12:08:24 +02:00
Mathnerd314
eb7404d97a all-packages: Use callPackage where possible 2015-09-14 22:27:19 -06:00
Marco Maggesi
cb2a05b826 HOL Light: findlib is not necessary (nor actually used). Remove dependency. 2015-09-13 18:08:20 +02:00
Russell O'Connor
4cc5f5dbb6 coq: Add csdp dependency 
The csdp program is invoked for some uses of Micromega tactics.
 2015-09-10 11:50:38 -04:00
Russell O'Connor
772ec9cae3 csdp: init at 6.1.1 2015-09-10 11:50:18 -04:00
Domen Kožar
f2627f9c81 Merge pull request #9752 from FRidh/maintainer 
add myself as maintainer
 2015-09-09 15:27:34 +02:00
Frederik Rietdijk
cd5a9afeac add myself as maintainer 2015-09-09 15:25:49 +02:00
Austin Seipp
d8858e48e2 nixpkgs/jonprl: minor touchups 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2015-09-09 07:48:55 -05:00
Brian McKenna
e9bdf0fc07 JonPRL: init at 0.1.0 2015-09-09 21:23:48 +10:00
Vladimír Čunát
8f33b8cc93 mass rewrite of find parameters to cross-platform style 
Fixes #9044, close #9667. Thanks to @taku0 for suggesting this solution.
Now we have no modes starting with `/` or `+`.

Rewrite the `-perm` parameters of find:
 - completely safe: rewrite `/0100` and `+100` to `-0100`,
 - slightly semantics-changing: rewrite `+111` to `-0100`.
I cross-verified the `find` manual pages for Linux, Darwin, FreeBSD.
 2015-09-06 10:26:30 +02:00
Marco Maggesi
97b27e69c0 Update HOL Light to svn r244. 2015-09-01 16:30:27 +02:00
Eelco Dolstra
8fc039188e Mark some packages with undownloadable source as broken 2015-09-01 12:00:04 +02:00
Vladimír Čunát
a839a48b0a root: fix build by -lX11 
The pkgconfig change didn't help, but I'd leave it in.
 2015-09-01 08:23:00 +02:00
Arseniy Seroka
a3fab58287 Merge pull request #9583 from pjones/pkg/geda 
geda: init at 1.8.2-20130925
 2015-09-01 04:42:34 +03:00
Peter Jones
1d4135eab9 geda: init at 1.8.2-20130925 2015-08-31 15:09:58 -06:00
Gabriel Ebner
6b42cd852a qalculate-gtk: init at 0.9.7 2015-08-31 19:20:29 +02:00
Austin Seipp
16b47aff4b nixpkgs: saw-tools 0.1-20150609 -> 0.1.1-20150731 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2015-08-30 02:58:47 -05:00
Frederik Rietdijk
dbc7e0fea5 spyder: 2.2.5 -> 2.3.6 
Set environment variable to use setuptools (fixes build issue).

[Bjørn: split enabling spyder for python3 into separate commit.]
 2015-08-29 17:41:35 +02:00
Peter Simons
69b648ea95 Revert "Added K Framework package." 
This reverts commit de02110903. The package doesn't
compile: https://github.com/NixOS/nixpkgs/pull/7419#issuecomment-135972366.
 2015-08-29 15:38:33 +02:00
Gabriel Ebner
0349b05695 veriT: 201410 -> 201506 2015-08-26 09:31:39 +02:00
Austin Seipp
1239465314 nixpkgs: lean 20150328 -> 20150821 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2015-08-21 13:57:16 -05:00
Eelco Dolstra
f423ba3863 cbc: Enable on Darwin 2015-08-19 11:53:10 +02:00
Eelco Dolstra
80c137c7a2 Add cbc, a mixed ILP solver 2015-08-12 18:39:28 +02:00
Bjørn Forsman
6542c344bc ngspice: rename pkgname (s/ng-spice-rework/ngspice/) 
I think the previous name comes from the fact that some older versions
were distributed in tarballs named ng-spice-rework-<version>. But now
the "rework" name seems odd; most references I found on the internet
calls the package "ngspice". Fix it.
 2015-08-08 20:02:30 +02:00
Michael Raskin
6863fde515 E prover: 1.8 -> 1.9 2015-08-08 21:01:31 +03:00