Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/ott/versions.
These checks were done:
- built on NixOS
- ran ‘/nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28/bin/ott --help’ got 0 exit code
- ran ‘/nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28/bin/ott.opt --help’ got 0 exit code
- found 0.28 with grep in /nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28
- directory tree listing: https://gist.github.com/177f63b8c23bae6301ced29fb0e617c4
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/cytoscape/versions.
These checks were done:
- built on NixOS
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
- found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
- directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/samtools/versions.
These checks were done:
- built on NixOS
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/novo2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl help’ got 0 exit code
- found 1.8 with grep in /nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8
- directory tree listing: https://gist.github.com/4673ea3645eb509035dcb386c4ad1da2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/bcftools/versions.
These checks were done:
- built on NixOS
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/plot-vcfstats -h’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/plot-vcfstats --help’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools -h’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools --help’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools help’ got 0 exit code
- found 1.8 with grep in /nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8
- directory tree listing: https://gist.github.com/c9ddd760c0c740dabaabeb604fbb8a5a
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/gtkwave/versions.
These checks were done:
- built on NixOS
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vermin -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vermin -h` and found version 3.3.89
- found 3.3.89 with grep in /nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89
- directory tree listing: https://gist.github.com/69f7a88d0a20c6860e8ee145090b3375
