Commit Graph

1591 Commits

Author SHA1 Message Date
Michael Raskin
2093d4781d sage: set platforms to the set where I can build it; Hydra ARM builds seem to fail 2018-03-10 13:50:11 +01:00
Graham Christensen
05db7ca765
Merge pull request #36553 from ryantm/auto-update/gmsh
gmsh: 3.0.5 -> 3.0.6
2018-03-09 17:25:29 -05:00
Graham Christensen
d2429e0045
Merge pull request #36537 from ryantm/auto-update/ginac
ginac: 1.7.2 -> 1.7.4
2018-03-09 17:20:53 -05:00
Daiderd Jordan
43be4ebfb1
Merge pull request #36581 from matthewbauer/darwin-fixes
darwin: fixes
2018-03-09 19:32:54 +01:00
Austin Seipp
de1cb85b20 symbiyosys: 2018.02.04 -> 2018.03.07
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-08 21:23:20 -06:00
Matthew Bauer
54e2c28b09 darwin: disable broken packages 2018-03-08 17:21:17 -06:00
wchresta
c6d3f0d3c6 tamarin-prover: 1.3.0 -> 1.3.1 2018-03-08 21:03:18 +01:00
Ryan Mulligan
365a2e5acc gmsh: 3.0.5 -> 3.0.6
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.0.6 with grep in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
- found 3.0.6 in filename of file in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
2018-03-08 11:29:17 -08:00
Ryan Mulligan
e729cebdc9 ginac: 1.7.2 -> 1.7.4
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar -h` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar --help` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar help` got 0 exit code
- found 1.7.4 with grep in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
- found 1.7.4 in filename of file in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
2018-03-08 08:40:52 -08:00
Ryan Mulligan
89fca29099 gfan: 0.6 -> 0.6.2
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2/bin/gfan --help` got 0 exit code
- found 0.6.2 with grep in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
- found 0.6.2 in filename of file in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
2018-03-08 07:52:17 -08:00
Robin Gloster
50cdd5f02b
shogun: add patch for json-c 0.13 2018-03-05 22:00:03 +01:00
Vladimír Čunát
565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Roger Qiu
30ba063dc3 gpredict: Added hamlib to buildInputs to control radios, and wrapped with wrapGAppsHook to fix gnome errors 2018-03-04 16:30:21 +11:00
Timo Kaufmann
4f239f9d49 sage: Make build more platform independant 2018-03-04 01:36:31 +01:00
Austin Seipp
7270f2139a tlaplus: init at 1.5.6
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-02 21:20:54 -06:00
Ryan Mulligan
a4809a57e1 root: 6.10.08 -> 6.12.06
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/pq2 -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -V` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -v` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` and found version 6.12.06
- found 6.12.06 with grep in /nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06

cc "@veprbl"
2018-03-01 15:39:08 +01:00
Ryan Mulligan
75072efb4b tulip: 4.9.0 -> 5.1.0
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config -h` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --version` and found version 5.1.0
- found 5.1.0 with grep in /nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0

cc ""
2018-02-28 20:33:39 +00:00
Ryan Mulligan
0c69b50356 picard-tools: 2.17.4 -> 2.17.10
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.17.10 with grep in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10
- found 2.17.10 in filename of file in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10

cc "@jbedo"
2018-02-28 15:02:46 +00:00
Ryan Mulligan
2fe9ca05e4 pari: 2.9.3 -> 2.9.4
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/tex2mail help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -V` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -v` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --version` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` and found version 2.9.4
- found 2.9.4 with grep in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4
- found 2.9.4 in filename of file in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4

cc "@ertes @raskin @AndersonTorres"
2018-02-28 14:27:07 +00:00
Peter Simons
09f18d3baf
Merge pull request #36094 from ryantm/auto-update/wxmaxima-17.10.1-to-18.02.0
wxmaxima: 17.10.1 -> 18.02.0
2018-02-28 13:40:02 +01:00
Ryan Mulligan
9394e70b0d verilator: 3.900 -> 3.920
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_profcfunc help` got 0 exit code
- found 3.920 with grep in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920
- found 3.920 in filename of file in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920

cc "@thoughtpolice"
2018-02-28 12:36:17 +01:00
Ryan Mulligan
84091451ec wxmaxima: 17.10.1 -> 18.02.0
Semi-automatic update. These checks were performed:

- built on NixOS
- found 18.02.0 with grep in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0
- found 18.02.0 in filename of file in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0

cc "@peti"
2018-02-27 19:05:41 -08:00
Frederik Rietdijk
b45845f228
Merge pull request #35713 from ryantm/auto-update/fricas-1.3.1-to-1.3.2
fricas: 1.3.1 -> 1.3.2
2018-02-27 08:12:42 +00:00
Frederik Rietdijk
671e405332
Merge pull request #35720 from ryantm/auto-update/igv-2.4.6-to-2.4.8
igv: 2.4.6 -> 2.4.8
2018-02-27 08:09:50 +00:00
Ryan Mulligan
be7cd20d3c lp_solve: 5.5.2.0 -> 5.5.2.5
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` got 0 exit code
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` and found version 5.5.2.5
- found 5.5.2.5 with grep in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5
- found 5.5.2.5 in filename of file in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5

cc "@smironov"
2018-02-26 21:57:53 -08:00
Ryan Mulligan
d1dc4cae54 igv: 2.4.6 -> 2.4.8
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
- found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

cc "@mimadrid"
2018-02-26 19:11:52 -08:00
Ryan Mulligan
4440d28fbd fricas: 1.3.1 -> 1.3.2
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` got 0 exit code
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` and found version 1.3.2
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/efricas --help` got 0 exit code
- found 1.3.2 with grep in /nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2

cc "@sprock"
2018-02-26 06:28:48 -08:00
adisbladis
e046d8bc08
Merge pull request #35555 from ryantm/auto-update/bcftools-1.6-to-1.7
bcftools: 1.6 -> 1.7
2018-02-26 17:39:46 +08:00
Ryan Mulligan
72a22296dd cryptoverif: 1.22 -> 1.28
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28/bin/cryptoverif --help` got 0 exit code
- found 1.28 with grep in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
- found 1.28 in filename of file in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
2018-02-26 08:32:20 +01:00
Jan Tojnar
c65cd765f6
gpredict: 1.3 → 2.2.1 2018-02-26 05:26:41 +01:00
adisbladis
e8d0563638
Merge pull request #35566 from ryantm/auto-update/bowtie2-2.3.4-to-2.3.4.1
bowtie2: 2.3.4 -> 2.3.4.1
2018-02-26 09:47:03 +08:00
adisbladis
780e1a34e1
Merge pull request #35583 from ryantm/auto-update/cbc-2.9.5-to-2.9.9
cbc: 2.9.5 -> 2.9.9
2018-02-26 09:33:53 +08:00
Ryan Mulligan
79795b44f9 cbc: 2.9.5 -> 2.9.9
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` and found version 2.9.9
- found 2.9.9 with grep in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
- found 2.9.9 in filename of file in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
2018-02-25 14:03:37 -08:00
Nikolay Amiantov
7f1b8d744f cntk: fix build without CUDA 2018-02-25 22:50:20 +03:00
Nikolay Amiantov
3179002f61 mxnet: 0.11.0 -> 1.1.0 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
6f96122d5b caffe: add nccl support 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
25079ad238 caffe: depend on opencv3
openblas is used since it's propagated from OpenCV and ATLAS compiled without
architecture-specific optimizations is generally slower than OpenBLAS as I
heard.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov
1bfca90bf7 cntk: 2.2 -> 2.4
Comment for `broken` indicates that it never worked at all, which is strange
since on my machine it did. Anyway it works now for me.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov
08f8ad26b3 treewide: unquote homepage in my packages
I don't like this personally but we have #27809 as a precedent.
2018-02-25 22:24:08 +03:00
Ryan Mulligan
bc730862d5 bowtie2: 2.3.4 -> 2.3.4.1
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` and found version 2.3.4.1
- found 2.3.4.1 with grep in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
- found 2.3.4.1 in filename of file in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
2018-02-25 09:45:04 -08:00
Ryan Mulligan
9af7602b8a bcftools: 1.6 -> 1.7
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help` got 0 exit code
- found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
2018-02-25 09:02:06 -08:00
Jan Tojnar
a31d98f312
tree-wide: autorename gnome packages to use dashes 2018-02-25 17:41:16 +01:00
Alexander V. Nikolaev
0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
Alexander V. Nikolaev
1bc1909e5b treewide: transition from mesa_glu to libGLU 2018-02-24 17:05:43 +02:00
Gabriel Ebner
f5b173ffbc qalculate-gtk: 2.1.0 -> 2.2.1 2018-02-24 11:54:53 +01:00
Timo Kaufmann
89162cdd29 sage: explicitly use gfortran6
The recent change from gfortran=gfortran6 to gfortran=gfortran7 broke
the build.
2018-02-23 17:00:21 +01:00
Johannes Frankenau
74029a21bf bcal: init at 1.7 2018-02-21 00:05:16 +01:00
Vladimír Čunát
b5aaaf87a7
Merge staging and PR #35021
It's the last staging commit (mostly) built on Hydra,
and a minimal fix for Darwin regression in pysqlite.
2018-02-16 09:13:12 +01:00
John Wiegley
90252481bf coq: 8.7.1 -> 8.7.2 2018-02-15 23:12:43 -08:00
Vincent Laporte
e75009ecdc
eprover: fix build in non-GCC environments 2018-02-14 22:46:12 +00:00