Dan Peebles
7ad3fd7ca7
neuron: fix on clang 3.8 and above
...
This is in preparation for upgrading Darwin stdenv to LLVM 4
2017-03-21 01:00:18 -04:00
Michael Raskin
4d5f33deff
Merge pull request #23376 from bcdarwin/ants
...
ANTs: init at 2.1.0 (0gyys1lf) and update ITK accordingly
2017-03-18 18:42:24 +01:00
rht
bbd1c3d58a
coq_HEAD: Update once more
2017-03-18 01:51:38 +03:00
rht
7264efb5cb
Fold in specific ocaml version choice into let
2017-03-18 01:51:37 +03:00
rht
975d040f07
coq_HEAD: Update to the latest commit
2017-03-18 01:50:26 +03:00
Robin Gloster
f70a896094
hol: mark as broken
2017-03-14 15:36:06 +01:00
Arseniy Seroka
320a8a5a94
Merge pull request #23842 from volhovM/fix/sage_68_sed
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sage: fix build at 6.8
2017-03-13 16:51:55 +03:00
Robin Gloster
e2a13af49c
emboss: fix build
2017-03-13 13:15:51 +01:00
Mikhail Volkhov
78c0cecc5f
sage: fix build at 6.8
2017-03-13 10:34:55 +03:00
Maximilian Bosch
2df3b5ca7f
geogebra: 5-0-331-0 -> 5-0-338-0 ( #23593 )
2017-03-12 21:37:10 +00:00
Jörg Thalheim
4d13b5d201
Merge pull request #23631 from edef1c/verilator-shebang
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verilator: fix Perl shebangs
2017-03-09 15:05:40 +01:00
Justin Bedo
1ac797861b
SnpEff: init at 4.3i
2017-03-08 22:43:50 +01:00
Justin Bedo
076e513b94
varscan: init at 2.4.2
2017-03-08 22:43:49 +01:00
Justin Bedo
4bb50fd08c
picard-tools: init at 2.7.1
2017-03-08 22:43:45 +01:00
Justin Bedo
7f214e6410
bedtools: init at 2.26.0
2017-03-08 22:36:29 +01:00
Justin Bedo
661048c803
platypus: init at 2017-03-07
2017-03-08 22:36:03 +01:00
Ricardo Ardissone
e17d3d4ef1
gplates: use boost 160
...
update 161 changed reference parameters for optional
https://hydra.nixos.org/build/49707856/nixlog/1
http://www.boost.org/doc/libs/1_61_0/libs/optional/doc/html/boost_ooptional/relnotes.html
2017-03-08 13:04:34 +02:00
edef
2c02c84cdc
verilator: fix Perl shebangs
2017-03-08 11:38:48 +01:00
Peter Simons
c5563b48ba
R: set TZDIR properly to fix test suite
2017-03-07 14:56:46 +01:00
Peter Simons
6b3eec627e
R: include output of sessionInfo() in the "make check" log
...
The R developers would like that information to be included in bug
reports.
2017-03-07 14:56:46 +01:00
Peter Simons
fac139e723
R: update to version 3.3.3
2017-03-07 14:56:46 +01:00
Jörg Thalheim
99e74e9509
alliance: mark as broken
...
there is no maintainer for this package and even debian looks
for a new maintainer.
2017-03-06 08:27:10 +01:00
Thomas Tuegel
494dc2af2e
Merge pull request #23423 from ttuegel/fricas
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fricas: 1.2.2 -> 1.3.1
2017-03-03 09:49:47 -06:00
Robin Gloster
bb9a37a2a5
ikarus: remove
...
unmaintained, only works on 32 bit
2017-03-03 13:43:04 +01:00
Benno Fünfstück
253d736398
boinc: fix location of /etc in $out
...
Looks like the latest version no longer requires the patch, and the patch instead resulted in
/etc files being installed to `$out/$out/etc` instead of `$out/etc`
2017-03-03 12:58:43 +01:00
Thomas Tuegel
28cb067600
fricas: 1.2.2 -> 1.3.1
2017-03-02 19:39:55 -06:00
Robin Gloster
c1866cade9
libsForQt5.qmltermwidget: fix build
2017-03-02 14:13:35 +01:00
Ben Darwin
05359c327b
ANTs: init at 2.1.0 (0gyys1lf)
2017-03-01 21:06:30 -05:00
Katona László
085502dd80
cytoscape: fixed issue with startup script
2017-03-01 21:46:49 +01:00
Robin Gloster
4df663a9a2
verilator: 3.884 -> 3.900
2017-02-27 15:22:50 +01:00
Domen Kožar
4ccb553b70
Merge pull request #22817 from jbedo/r
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R: 3.2.4 -> 3.3.2
2017-02-27 14:02:13 +01:00
Bjørn Forsman
c49533a494
qt-gstreamer1: align attrname with pkgname
2017-02-27 12:16:26 +01:00
Christopher League
242f6caac6
logisim: use better jar wrapper, closes #23068
2017-02-26 10:19:32 +01:00
Gabriel Ebner
cc647804f1
lean: 3.0.0 -> 3.1.0
2017-02-26 08:50:15 +01:00
Thomas Tuegel
0ed156a216
Merge pull request #22977 from ttuegel/triage-kde4
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Remove KDE 4 desktop packages
2017-02-25 12:21:44 -06:00
Peter Hoeg
e564a399d9
Merge pull request #22770 from NickHu/master
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fdr: init at 4.2.0
2017-02-25 14:50:04 +08:00
Thomas Tuegel
b4ba042924
qt4: Don't pass top-level attribute through kde4
2017-02-24 16:49:06 -06:00
Nick Hu
cbe765043f
fdr: init at 4.2.0
2017-02-24 11:00:02 +00:00
Justin Bedo
4bb8727284
R: 3.2.4 -> 3.3.2
2017-02-24 15:22:12 +11:00
Franz Pletz
67018e7759
pymol: fix evaluation
...
cc #23007 @Mounium @Mic92
2017-02-22 08:48:42 +01:00
Mounium
eb688ac0a7
pymol: init at 1.8.4 ( #23007 )
2017-02-22 01:35:09 +01:00
Maximilian Bosch
10a453c61b
geogebra: add ma27 as maintainer
2017-02-19 16:51:01 +01:00
Maximilian Bosch
5d62724e27
geogebra: 5-0-328-0 -> 5-0-331-0
2017-02-19 16:44:49 +01:00
Maximilian Bosch
d95868e980
geogebra: 5-0-320-0 -> 5-0-328-0
2017-02-14 17:43:58 +01:00
Rongcui Dong
acce1d9ad2
ngspice: Add XSpice and Cider support
2017-02-13 15:23:38 -08:00
Frederik Rietdijk
2832472da0
golly: use python2
2017-02-10 09:35:10 +01:00
Celine Mercier
78c052e91a
ecopcr: init at 0.8.0
2017-02-06 16:01:08 +01:00
Ian Lancaster
5f67b7b30a
emboss: 6.0.1 -> 6.6.0
2017-02-04 19:05:48 -05:00
Joachim F
2b961075ae
Merge pull request #22231 from Ma27/hotfix/update-geogebra
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geogebra: 5.0.271.0 -> 5-0-320-0
2017-02-03 01:13:07 +01:00
Gabriel Ebner
311ec6abd5
Merge pull request #22361 from peterhoeg/u/crunch
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speedcrunch: 0.11 -> 0.12.0
2017-02-02 07:54:06 +01:00
Rongcui Dong
7ea20c9e27
ngspice: 25 -> 26
2017-02-02 07:42:26 +01:00
Peter Hoeg
58a5d0783e
speedcrunch: 0.11 -> 0.12.0
...
Also:
- build against qt5 instead of qt4
2017-02-02 09:13:54 +08:00
Gabriel Ebner
ac10c19746
veriT: 201506 -> 2016
2017-02-01 19:43:02 +01:00
Damien Cassou
58dc8e3024
Remove myself from maintainers
2017-01-31 11:00:14 +01:00
Maximilian Bosch
eda5bca00a
geogebra: 5.0.271.0 -> 5-0-320-0
2017-01-28 17:33:20 +01:00
Vincent Laporte
d40b680101
coq-8.4: fix build of ssreflect and mathcomp
2017-01-25 13:14:31 +00:00
Vincent Laporte
798a87159b
Coq: propagates the findlib package
...
So that Coq libraries that need it can easyly use it
2017-01-25 10:29:13 +00:00
Vincent Laporte
9b949be617
coq: minor refactoring
2017-01-25 10:29:13 +00:00
Vincent Laporte
a30e8db9f0
coq: merge files 8.5.nix and 8.6.nix into default.nix
2017-01-25 10:29:13 +00:00
Vincent Laporte
86b74fb76b
alt-ergo: 0.99.1 -> 1.30
2017-01-21 13:44:41 +00:00
Vincent Laporte
8c928cd55a
why3: 0.87.1 -> 0.87.3
2017-01-21 13:31:10 +00:00
Gabriel Ebner
6c9f4a61be
lean: 2017-01-14 -> 3.0.0
2017-01-20 10:59:54 +01:00
Gabriel Ebner
5ad75554b6
lean: 2017-01-06 -> 2017-01-14
2017-01-14 09:37:48 +01:00
Pascal Wittmann
89dfe67f81
Merge pull request #21819 from AtnNn/isabelle
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isabelle: 2016 -> 2016-1
2017-01-13 21:58:57 +01:00
Etienne Laurin
3d301e384e
isabelle: 2016 -> 2016-1
2017-01-11 17:33:04 -05:00
Michael Raskin
39ed261c4c
Merge pull request #21632 from veprbl/sherpa_fix
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sherpa: fix sqlite dependency
2017-01-09 09:58:22 +00:00
Dmitry Kalinkin
0f71012fe6
sherpa: add useful dependencies
2017-01-07 01:36:51 -05:00
Vladimír Čunát
07bf828bd9
Merge branch 'staging'; security /cc #21642
2017-01-06 16:32:47 +01:00
Gabriel Ebner
74a97421ce
lean: 2016-12-30 -> 2017-01-06
2017-01-06 11:57:40 +01:00
Dmitry Kalinkin
2f23d60323
sherpa: fix sqlite dependency
2017-01-04 04:59:06 +00:00
Daiderd Jordan
27660cfdc0
Merge branch 'master' into staging
2017-01-04 01:42:26 +01:00
Domen Kožar
af2cfc076f
haskellPackages.z3: fix #16357
2017-01-03 23:10:24 +01:00
Michael Raskin
7c5784d1f0
maxima: 5.38.1 -> 5.39.0
2017-01-02 21:53:21 +01:00
Daiderd Jordan
5a67b130b9
Merge branch 'master' into staging
2017-01-02 00:54:17 +01:00
Dmitry Kalinkin
c7bcb99ff2
root: 6.04.18 -> 6.08.02
...
This relies on
e9d60c56
2017-01-01 17:52:03 -05:00
Pascal Wittmann
039e90c9d3
fityk: 1.3.0 -> 1.3.1
2017-01-01 18:19:39 +01:00
Gabriel Ebner
68b2d43c88
lean: 2016-12-08 -> 2016-12-30
2016-12-31 13:51:10 +01:00
Dmitry Kalinkin
8fb6895614
sherpa: init at 2.2.1
2016-12-30 14:27:55 -05:00
Michael Raskin
e65cccb776
Merge pull request #21221 from rardiol/gplates
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gplates: init at 2.0.0
2016-12-28 10:21:23 +00:00
mimadrid
29cb10c021
igv: 2.3.77 -> 2.3.89
2016-12-23 19:37:10 -05:00
John Wiegley
4888bfecc2
coq_8_6: 8.6 is now default, 8.4 optional, updated mathcomp/ssreflect
...
Addresses #14829
2016-12-22 10:35:56 -08:00
Jason Daniel Augustine Gilliland
59ca5d213f
freebayes: init at 1.1.0
...
Signed-off-by: zimbatm <zimbatm@zimbatm.com>
2016-12-22 14:10:37 +00:00
ft@zeus
1b8aec421b
stellarium: 0.14.3 -> 0.15.0
...
close #21271
2016-12-21 20:22:44 -05:00
Ricardo Ardissone
662aa495df
gplates: init at 2.0.0
2016-12-16 22:29:53 -02:00
John Wiegley
838a3b4294
coq_8_6: 8.6rc1 -> 8.6
2016-12-14 13:46:07 -08:00
John Wiegley
62934023c3
coq_HEAD: Update to the latest commit as of 2016-12-13
2016-12-13 08:09:23 -08:00
John Wiegley
360234dab6
coq_8_6: new package, based on Coq 8.6rc1
2016-12-13 07:27:15 -08:00
Eelco Dolstra
c5b96ca801
minisat: Fix build on Darwin
2016-12-09 19:57:07 +01:00
Gabriel Ebner
a2210a9efd
lean: init at 2016-12-08
2016-12-08 10:30:28 -05:00
Gabriel Ebner
ce2a9a8f9b
lean2: 2016-07-05 -> 2016-11-29
...
Renamed from lean since upstream renamed it as well. The lean attribute
in nixpkgs will now refer to the new lean 3 version.
2016-12-08 10:30:28 -05:00
Michael Raskin
3a98749bd1
pari: 2.9.0 -> 2.9.1
2016-12-08 16:15:18 +01:00
Vincent Laporte
431c564993
hol_light: fix build with Camlp5-6.17
2016-11-29 18:34:21 +00:00
Nicolò Balzarotti
f390d68b75
yarp: 2.3.66.1 -> 2.3.68
2016-11-28 17:03:19 +01:00
Michael Raskin
fcc5a4d3b8
Merge pull request #20672 from AndersonTorres/pari
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pari/gp: 2.7.6 -> 2.9.0
2016-11-26 13:34:15 +00:00
Ole Krüger
a31c37c759
[mathematica] 10.0.2 -> 11.0.1
2016-11-25 12:13:41 +01:00
AndersonTorres
d395439a10
pari/gp: 2.7.6 -> 2.9.0
...
Adding gp2c compiler, too.
2016-11-24 22:44:56 -02:00
Vladimír Čunát
4c19651108
Merge #20264 : root: fix environment setup
2016-11-14 22:27:09 +01:00
Justin Bedo
a6d6a3972f
plink-ng: init at 1.90b3
2016-11-14 20:28:39 +11:00
Shea Levy
2ded9f3f7b
coq: Improve emacs buffer handling
2016-11-13 14:01:01 -05:00
Austin Seipp
0bdc0143fe
nixpkgs: proverif 1.94 -> 1.95
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2016-11-10 03:45:51 +00:00
Frederik Rietdijk
3b5d5041ef
Merge pull request #20267 from jbedo/master
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Fix bcftools installation prefix
2016-11-09 21:57:46 +01:00
Gabriel Ebner
8c4aee4c79
z3: 4.4.1 -> 4.5.0
2016-11-08 16:14:16 -05:00
Justin Bedo
ec31e2cc27
Fix bcftools installation prefix
2016-11-09 08:03:04 +11:00
Tim Steinbach
6d11e8ed4c
Remove pal2nal
...
No longer build/exists
2016-11-03 21:58:47 -04:00
Tim Steinbach
c36a1d6502
paml: 4.2a -> 4.9c
2016-11-03 21:33:19 -04:00
Vincent Laporte
b028b5f4ef
coq-8.5: ease the selection of an older (patch level) version
2016-11-02 19:39:22 +01:00
Vincent Laporte
b840da02cd
coq: build and install the votour utility
2016-11-02 19:23:15 +01:00
Vincent Laporte
da68cc24f0
coq: 8.5pl2 -> 8.5pl3
2016-11-02 19:23:15 +01:00
vbgl
7f241baaaf
Merge pull request #19902 from dtzWill/update/yices
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yices: 2.3.1 -> 2.5.1
2016-10-31 09:35:21 +01:00
Will Dietz
0443affe17
yices: Add darwin to meta.platforms
2016-10-30 13:38:07 -05:00
Dmitry Kalinkin
9434ec5441
root: fix environment setup
...
1) s/envHook/postHook/
2) patch to not set $p that fixes nested ```nix-shell -p root``` calls
2016-10-29 14:47:32 -04:00
Ertugrul Söylemez
9c8f6fb4fb
pari-unstable: 2.8.0 -> 2.8.1, "alpha" -> "unstable".
2016-10-27 14:48:03 +02:00
Michael Raskin
f9f23084d9
pari_alpha: fix source link
2016-10-27 12:17:16 +02:00
Will Dietz
3cf27a654a
yices: Build in parallel, run tests, fix test shebang.
2016-10-26 13:01:21 -05:00
Will Dietz
8584ec97ed
yices: fix install target by using 'true' as ldconfig
2016-10-26 12:59:34 -05:00
Will Dietz
1f89121551
yices: 2.3.1 -> 2.5.1
2016-10-26 12:59:06 -05:00
Frederik Rietdijk
7077a270bf
Merge remote-tracking branch 'upstream/master' into HEAD
2016-10-26 13:06:43 +02:00
Michael Raskin
28aa92de64
maxima: support building with ECL; optionally support building maxima.fas when building with ECL
2016-10-26 11:06:41 +02:00
Michael Raskin
36804c75e4
singular: Wrap executables instead of symlinking
...
This way config scripts can fidn out their own location
2016-10-26 11:06:40 +02:00
Michael Raskin
2bed05d8e1
singular: add an option to install as libsingular
2016-10-26 11:06:40 +02:00
Michael Raskin
8e9ad9bfdc
pari_alpha: use perl to generate function descriptions
2016-10-26 11:06:40 +02:00
Michael Raskin
5af1b7ad02
singular: 3-1-2 -> 3-1-7
2016-10-26 11:06:39 +02:00
Michael Raskin
93bea1ecb0
R: 3.2.3 -> 3.2.4
2016-10-26 11:06:37 +02:00
Michael Raskin
5f418b75d6
nauty: init at 26r7
2016-10-26 11:06:36 +02:00
Michael Raskin
a67a50895c
gfan: init at 0.5
2016-10-26 11:06:36 +02:00
Michael Raskin
71f659d86d
pari_alpha: init at 2.8.0.alpha: planning to use for Sage
2016-10-26 11:06:34 +02:00
Michael Raskin
411d5742ca
symmetrica: init at 2.0
2016-10-26 11:06:33 +02:00
Michael Raskin
c450d7b0a8
ratpoints: init at 2.1.3
2016-10-26 11:06:33 +02:00
Frederik Rietdijk
e56832d730
Merge remote-tracking branch 'upstream/master' into HEAD
2016-10-22 17:23:24 +02:00
Vladimír Čunát
4328629bf8
treewide: fix meta evaluation
...
There is no `stdenv.maintainers`. /cc @veprbl.
2016-10-22 12:05:23 +02:00
Jörg Thalheim
9c0b5e4b22
Merge pull request #19666 from veprbl/hep_for_upstream
...
Add fastjet, hepmc, yoda, rivet, lhapdf, herwig, pythia, sacrifice, nlojet++
2016-10-21 21:58:45 +02:00
Dmitry Kalinkin
ef96b48659
root: s/python/python2/
2016-10-21 15:47:38 -04:00
Dmitry Kalinkin
59a8aff8e6
root: add veprbl to maintainers
2016-10-21 13:30:30 -04:00
Dmitry Kalinkin
b4e3e7b752
add veprbl to maintainers
2016-10-21 13:29:57 -04:00
=
d6880b210c
yarp: 2.3.65 -> 2.3.66.1
2016-10-20 19:34:03 +02:00
Dmitry Kalinkin
3324d8dc72
sacrifice: init at 1.0.0
2016-10-19 02:17:16 -04:00
Frederik Rietdijk
8963dae343
z3: use python2
2016-10-18 23:16:07 +02:00
Shea Levy
eca0f17ad2
nix-buffer support improvements.
...
Use inherit-local, add per-package elisp hooks.
2016-10-07 10:31:37 -04:00
Kirill Boltaev
3e646865f4
treewide: use ocaml.version ( #19192 )
2016-10-05 09:32:30 +02:00
Aneesh Agrawal
fcee1d0b28
Remove redundant -DCMAKE_BUILD_TYPE=Release flags
...
Since commit 183d05a0fixes #18000
2016-10-01 16:13:41 +02:00
Brian McKenna
57e1250d89
redprl: remove explicit builder
...
patchPhase wasn't being called for me so I've switched out the explicit
builder for the generic form. I can now build RedPRL on locally on
NixOS.
2016-09-29 10:52:29 +10:00
Anthony Cowley
a523351314
redprl: patch install script shebangs
2016-09-27 18:24:06 -04:00
Joachim F
19d3b1aa5f
Merge pull request #19004 from nico202/fix-gazebo-cmake
...
gazebo7: Fix gazebo-config.cmake output file
2016-09-27 16:32:32 +02:00
=
efb56cec43
gazebo7: Fix gazebo-config.cmake output file
2016-09-27 10:30:27 +02:00
Kirill Boltaev
2bc87d48f1
scilab: mark as broken
2016-09-26 02:36:49 +03:00
Kirill Boltaev
06ecea00e5
glsurf: mark as broken
2016-09-26 02:36:49 +03:00
Kirill Boltaev
e61663a233
treewide: move to ocaml-ng system
2016-09-26 02:36:49 +03:00
Anthony Cowley
a3c26fec32
redprl: init at 2016-09-22
2016-09-23 20:37:20 -04:00
Vincent Laporte
c78c2b98c4
ecm: set meta.platforms to linux only
2016-09-21 19:14:11 +02:00
Gabriel Ebner
dd4a015aa8
eprover: 1.9 -> 1.9.1
2016-09-20 11:57:14 -04:00
