Commit Graph

386 Commits

Author SHA1 Message Date
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
R. RyanTM
b9137d6bce openlibm: 0.5.5 -> 0.6.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/openlibm/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.6.0 with grep in /nix/store/crnh2jiksr0b3sq5v6fc9x7zrrsjgirg-openlibm-0.6.0
- directory tree listing: https://gist.github.com/c287196625881e2d6c72af761704718e
- du listing: https://gist.github.com/ac9a45900fb2ba4ff48120c343677dec
2018-06-23 18:48:17 -07:00
R. RyanTM
12a554dc31 brial: 1.2.3 -> 1.2.4
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/brial/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.2.4 with grep in /nix/store/d80z046q8l3rhi7zwbcxzaydfrqxvzq9-brial-1.2.4
- directory tree listing: https://gist.github.com/73a4fe4d778faacdf1c17f40a83e3884
- du listing: https://gist.github.com/23202c35b020ea0976f7c4ff9e23ca2c
2018-06-19 16:52:22 -07:00
Vladimír Čunát
31530c185e
Merge a subset of staging (security)
In particular, this contains Firefox-related and libgcrypt updates.
Other larger rebuilds would apparently need lots of time to catch up
on Hydra, due to nontrivial rebuilds in other branches than staging.
2018-06-15 08:48:02 +02:00
R. RyanTM
cc9fc2bdcd ipopt: 3.12.9 -> 3.12.10 (#41555)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ipopt/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 3.12.10 with grep in /nix/store/6748l35g9dz7z77wqwal99ylrhn87liv-ipopt-3.12.10
- directory tree listing: https://gist.github.com/5da4bb4853af0913caca26e8cbc87666
- du listing: https://gist.github.com/c4d8373c7d9a61f39479151fdffa99cb
2018-06-09 23:33:17 +02:00
Will Dietz
912b58a2c1 openblas: workaround mass-rebuilds
Thanks for the suggestion:
https://github.com/NixOS/nixpkgs/pull/41639#issuecomment-395509669
2018-06-07 13:38:08 -05:00
Will Dietz
b1d54822e4 openblas: remove patch that's no longer needed (PR merged) 2018-06-07 12:20:08 -05:00
Frederik Rietdijk
4dc7cc8cc7
Merge pull request #41259 from jyp/tf-1.7.1-bin
python.pkgs.tensorflow: wheel version
2018-06-07 11:27:39 +02:00
R. RyanTM
9d1d274928 openblas: 0.2.20 -> 0.3.0 (#41054) 2018-06-03 13:23:38 +00:00
Jean-Philippe Bernardy
397c4b7748 cudatoolkit: add 9.0
This version is a dependency of tensorflow binaries
2018-05-31 22:21:54 +02:00
Jean-Philippe Bernardy
9e730ee254 renaming cudatoolkit version numbers 2018-05-31 22:21:53 +02:00
Orivej Desh
0159beb89c ns-3: fix build after #28029 2018-05-30 02:37:40 +00:00
Ben Darwin
7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Robert Schütz
6e6005c2af
Merge pull request #38794 from timokau/brial-init
brial: init at 1.2.3
2018-05-08 08:08:15 +02:00
Timo Kaufmann
8b5ecf9141 brial: init at 1.2.3 2018-05-08 01:27:35 +02:00
Timo Kaufmann
ca9ea31ae1 liblapack: 3.4.1 -> 3.8.0 2018-05-06 21:12:01 +02:00
Matthew Justin Bauer
8e6684ca32
Merge pull request #39795 from r-ryantm/auto-update/atlas
atlas: 3.10.2 -> 3.10.3
2018-05-04 17:18:23 -05:00
R. RyanTM
24761ef5d4 atlas: 3.10.2 -> 3.10.3
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/atlas/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/bgqampvgm3zdncg3206n7qnvyvl0jipj-atlas-3.10.3
- directory tree listing: https://gist.github.com/a7dd287df10b13796423e3c2df0850eb
2018-04-30 23:08:21 -07:00
Timo Kaufmann
a0076a4fb6 rubiks: fix build 2018-04-27 17:53:58 +02:00
Daiderd Jordan
bae15c811f
sympow: don't use placeholder 2018-04-26 22:50:36 +02:00
Matthew Justin Bauer
7ebb6212a2
Merge pull request #38805 from timokau/zn_poly-init
zn_poly: init at 0.9
2018-04-24 09:28:27 -05:00
Timo Kaufmann
28c023e246 zn_poly: init at 0.9 2018-04-22 20:44:06 +02:00
Timo Kaufmann
0c9aaf0814 rankwidth: init at 0.7 2018-04-22 20:11:49 +02:00
Timo Kaufmann
b74e884aab flintqs: init at 1.0 2018-04-21 20:43:56 -05:00
Timo Kaufmann
d0d7894f75 rubiks: init at 20070917 2018-04-21 20:42:58 -05:00
Timo Kaufmann
10124a4743 lcalc: init at 1.23 (#38796) 2018-04-21 20:38:40 -05:00
Jörg Thalheim
f7785dd61c
Merge branch 'master' into minc_ecosystem 2018-04-21 20:18:27 +01:00
Jörg Thalheim
38d6decac3
Merge pull request #38804 from timokau/sympow-init
sympow: init at 1.018.1
2018-04-21 19:46:59 +01:00
Timo Kaufmann
f8fbe0f157 sympow: init at 1.018.1 2018-04-20 10:28:44 +02:00
Timo Kaufmann
d8e5160b23 planarity: init at 3.0.0.5 (#38800) 2018-04-19 08:43:44 +02:00
Jörg Thalheim
be5ad658df
Merge pull request #38971 from knedlsepp/fix-darwin-gpu-stuff
Fix clblas and libgpuarray on darwin
2018-04-17 13:58:54 +01:00
Josef Kemetmüller
357d8f600c clblas: Enable darwin build 2018-04-15 12:12:25 +02:00
Robert Schütz
089eefe724
Merge pull request #38795 from timokau/cliquer-init
cliquer: init at 1.21
2018-04-14 17:41:11 +02:00
Timo Kaufmann
2c23faa3d8 cliquer: init at 1.21 2018-04-14 10:33:54 +02:00
Timo Kaufmann
7d625f6c08 m4rie: init at 20150908 2018-04-12 13:40:27 +02:00
Robert Schütz
077bf8de4c
Merge pull request #38762 from timokau/m4ri-init
m4ri: init at 20140914
2018-04-12 13:26:52 +02:00
Timo Kaufmann
280b421cbb m4ri: init at 20140914 2018-04-12 13:24:20 +02:00
Ben Darwin
1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin
efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00
Ben Darwin
12fa2f9fd3 metadata fixes: EBTKS, MNI::Perllib, Text::Format 2018-04-10 00:53:55 -04:00
Ben Darwin
c1488921a0 oobicpl: init at 2016-03-02 2018-04-09 18:07:52 -04:00
Ben Darwin
d094f52112 fix EBTKS version naming 2018-04-09 18:07:15 -04:00
Ben Darwin
c9db4cabc8 bicpl: init at 2017-09-10 2018-04-09 18:07:15 -04:00
Ben Darwin
cf2aac6a04 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
Ben Darwin
e7d447ce2c EBTKS: init at 1.6.50 (develop branch) 2018-04-09 18:06:33 -04:00
Frederik Rietdijk
595a72589f Merge master into staging 2018-04-08 10:54:17 +02:00
Matthieu Coudron
863c2908f2 ns-3: init at 28.0
ns-3 is a discrete event C++ network simulator developed at www.nsnam.org .

Python bindings & manual building are disabled by default but you can
override it.
2018-04-06 13:54:20 +09:00
Daiderd Jordan
a378141684
caffe2: mark linux only 2018-04-05 20:05:18 +02:00
Tuomas Tynkkynen
747ebe3f66 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/top-level/all-packages.nix
2018-04-03 02:22:54 +03:00
Ryan Mulligan
85afb4e1e6 petsc: 3.8.3 -> 3.8.4
Semi-automatic update generated by https://github.com/ryantm/nix-update tools.

This update was made based on information from https://repology.org/metapackage/petsc/versions.

These checks were done:

- built on NixOS
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/saws/getSAWs.bash help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff -h` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscdiff --help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -V` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -v` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --version` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py version` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py -h` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py --help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/update.py help` and found version 3.8.4
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/sendToJenkins -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/sendToJenkins --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py -h` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py --help` got 0 exit code
- ran `/nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4/bin/petscnagupgrade.py help` got 0 exit code
- found 3.8.4 with grep in /nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4
- found 3.8.4 in filename of file in /nix/store/czmq31v2xa85ql17whbn05774cncbr4a-petsc-3.8.4
- directory tree listing: https://gist.github.com/da90b8c44c7ed274deb2e1a2c7de8dad
2018-03-28 00:48:35 -07:00
Shea Levy
d0a8866622
Merge branch 'binutils-2.30' into staging 2018-03-22 07:28:10 -04:00
Shea Levy
5ce31aa6b7
Revert "atlas: 3.10.2 -> 3.10.3"
3.10.3 segfaults with glibc 2.27, and since it was fairly recently
added via autoupdate hopefully it's not too strongly needed yet.

This reverts commit 4c28d80be2.
2018-03-20 17:21:20 -04:00
Will Dietz
161253f0e0
Merge pull request #37047 from dtzWill/fix/openblas-numpy-musl
openblas, numpy: fix w/musl
2018-03-19 13:39:24 -05:00
Ryan Mulligan
4c28d80be2 atlas: 3.10.2 -> 3.10.3
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/79z1zd6ydm6b7x6xbf8b908iirah8hqn-atlas-3.10.3
2018-03-16 01:31:41 -07:00
Will Dietz
837538da43 openblas: don't build w/openmp on musl 2018-03-15 18:27:22 -05:00
Joachim F
6ae3aa1560
Merge pull request #36640 from ryantm/auto-update/openlibm
openlibm: 0.5.4 -> 0.5.5
2018-03-14 21:13:44 +00:00
Josef Kemetmüller
edef344458 petsc: fix darwin build 2018-03-12 00:20:18 +01:00
Yuri Aisaka
e559fa19f3 fix compilation on gcc7 2018-03-09 22:34:25 +09:00
Ryan Mulligan
724667fa3f openlibm: 0.5.4 -> 0.5.5
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 0.5.5 with grep in /nix/store/im5hsldagl6la2yf5s8rsnv2w57mb76m-openlibm-0.5.5
- found 0.5.5 in filename of file in /nix/store/im5hsldagl6la2yf5s8rsnv2w57mb76m-openlibm-0.5.5
2018-03-09 05:10:28 -08:00
Ryan Mulligan
1aa5bb44ca blas: 3.7.1 -> 3.8.0
Semi-automatic update. These checks were performed:

- built on NixOS
- found 3.8.0 in filename of file in /nix/store/6j28cb5b114fxj7x7wpwv8mdbiqxq1fj-blas-3.8.0
2018-03-04 18:51:48 +00:00
Anders Kaseorg
6f073154da Give working advice for running nix-prefetch-url
nix-prefetch-url file://… requires a full path.  Suggest an invocation
that will provide one.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2018-03-04 17:28:36 +00:00
Ryan Mulligan
6eecefbfbe petsc: 3.7.6 -> 3.8.3
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/saws/getSAWs.bash help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -V` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -v` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --version` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py version` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py --help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/update.py help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscnagupgrade.py help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/sendToJenkins --help` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff -h` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff --help` got 0 exit code
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff -h` and found version 3.8.3
- ran `/nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3/bin/petscdiff --help` and found version 3.8.3
- found 3.8.3 with grep in /nix/store/fgr3yvhrnvfhr0czc4ygx1mnjsrv4f4i-petsc-3.8.3
2018-03-03 11:03:57 +00:00
Ryan Mulligan
d3a20a674c openspecfun: 0.4 -> 0.5.3
Semi-automatic update. These checks were performed:

- built on NixOS
- found 0.5.3 in filename of file in /nix/store/yqsgs9hw8c3rdia75rswgk98lz3c52ih-openspecfun-0.5.3

cc "@ttuegel"
2018-02-27 09:02:15 -08:00
Nikolay Amiantov
41abde91ce nccl: 1.2.4-1 -> 2.1.4
It's closed source now.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov
e77d2106bf ipopt: 3.12.8 -> 3.12.9 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
efe836160f cudatoolkit: 9.0.176 -> 9.1.85.1 2018-02-25 22:24:09 +03:00
Yuri Aisaka
f8c48908f7 caffe2: init at 0.8.1 (#34956) 2018-02-16 15:09:40 +00:00
Will Dietz
8dfe068f86 openblas: patch to fix on non-glibc 2018-02-13 09:44:48 -06:00
Will Dietz
c8081971f4 openblas: NO_AFFINITY=1 fix for musl 2018-02-13 09:44:48 -06:00
Renato Alves
b2284e0454
htslib: 1.6 -> 1.7 2018-02-06 15:37:50 +01:00
Markus Kowalewski
a16880533f arpack: remove FFLAGS 2018-01-22 15:52:57 -08:00
Markus Kowalewski
eb30d65de6 arpack: 3.3.0 -> 3.5.0 2018-01-22 15:36:43 -08:00
Tuomas Tynkkynen
722295fc15 openblas: Support ARMv6 2017-12-30 00:19:57 +02:00
hyphon81
05573d3e06
nccl: init at 1.3.4-1 2017-12-28 17:46:52 +01:00
Orivej Desh
4de81540df
Merge pull request #32427 from TravisWhitaker/cudnn
cuDNN 7.0.3 -> 7.0.5
2017-12-17 04:25:42 +00:00
georgewhewell
73b65551f4 openblas: add aarch64 platform config 2017-12-11 19:22:07 +02:00
Travis Whitaker
777c9bfdae cuDNN 7.0.3 -> 7.0.5 2017-12-07 15:13:07 -08:00
Orivej Desh
45cf0b0da4 fenics: restrict to Darwin
It has never been building on Linux.
2017-12-01 07:17:15 +00:00
Orivej Desh
4d50d79bc8 atlas: disable parallel building 2017-11-22 06:49:21 +00:00
Orivej Desh
d5e3935a6a atlas: enable parallel building 2017-11-21 19:29:10 +00:00
Nikolay Amiantov
77046bed8a cudnn7: 7.0 -> 7.0.3 2017-10-28 17:39:59 +03:00
Nikolay Amiantov
50a223b144 clblas: 20160505 -> 2.12 2017-10-19 12:47:30 +03:00
Nikolay Amiantov
6309e5fa01 cudnn: refactor to use shared derivation
Also return 8.0-6.0 version for TensorFlow.
2017-10-19 12:47:30 +03:00
Nikolay Amiantov
ce9059a120 cudnn_cudatoolkit9: init at 7.0
Make it the default.
2017-10-19 12:47:30 +03:00
Orivej Desh
047c576353 Merge pull request #29963 from mimadrid/update/samtools-1.6.0
samtools: 1.5.0 -> 1.6.0
2017-10-02 01:07:11 +00:00
Orivej Desh
0acf94bb9f htslib: fix up 2017-10-01 07:12:52 +00:00
mimadrid
25b17ae1d7
htslib: 1.5.0 -> 1.6.0 2017-09-30 22:14:49 +02:00
Nikolay Amiantov
098c6825e0 blas: 3.5.0 -> 3.7.1 2017-09-25 22:46:44 +03:00
Jörg Thalheim
aab8f8df4b nifticlib: use mirror for sourceforge 2017-09-21 09:10:12 +01:00
Ben Darwin
0d981c5761 nifticlib: init at 2.0.0 2017-09-20 19:04:22 -04:00
John Ericson
8fccaa284d Merge pull request #29282 from obsidiansystems/soext
lib, treewide: Add `*Platform.extensions` and use it where possible
2017-09-13 11:20:06 -04:00
John Ericson
5aec3f96a2 treewide: Use *Platform.extensions 2017-09-13 11:16:10 -04:00
Jean-Philippe Bernardy
1ba197f225 make my maintainer handle match my github username 2017-09-12 15:17:18 +02:00
Jean-Philippe Bernardy
d51bd36646 cudnn: add 6.0 2017-09-07 09:28:03 +02:00
jamtrott
c8c0cd4d6c petsc: init at 3.7.6 (#28368)
* petsc: init at 3.7.6

* petsc: use configureFlagsArray

* petsc: Remove unneeded binaries
2017-09-03 17:11:16 +01:00
James D. Trotter
518fb60797 fenics: init at 2017.1.0 2017-08-15 16:19:45 +02:00
Frederik Rietdijk
b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0
samtools: 1.4.0 -> 1.5.0
2017-08-13 22:32:48 +02:00
mimadrid
302e7825fa
htslib: 1.4.0 -> 1.5.0 2017-08-13 00:16:42 +02:00
mimadrid
09e0cc7cc7
Update homepage attributes: http -> https
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
2017-08-03 11:56:15 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809)
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
2017-08-01 22:03:30 +02:00
Frederik Rietdijk
ec59e3b3f5 openblas: 0.2.19 -> 0.2.20 2017-07-28 18:08:06 +02:00
Nikolay Amiantov
5fdc1e763f ipopt: 3.12.6 -> 2.12.8 2017-07-27 17:07:44 +03:00
Ben Darwin
d1d0824b2f elastix: change platforms to "linux" from "unix" 2017-07-19 17:41:14 -04:00
Ben Darwin
b21805d972 elastix: init at 4.8 2017-05-23 18:25:15 -04:00
Tyson Whitehead
8fdbc828b9
clblas-cuda: requires ocl-icd now for libOpenCL.so.1 #25902 2017-05-18 18:32:09 -04:00
Jörg Thalheim
be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4
Update/htslib 1.4
2017-05-11 07:08:56 +01:00
mimadrid
295a23a2db
htslib: 1.3.2 -> 1.4 2017-05-07 23:15:42 +02:00
Daiderd Jordan
f240276000
blas: fix darwin library id 2017-04-27 23:25:07 +02:00
Vladimír Čunát
6617c8bd87
A fixed version of commit eb750f9a7b
For detailed explanation see:
https://github.com/NixOS/nixpkgs/commit/24444513fb5#commitcomment-21767916
2017-04-14 18:59:36 +02:00
Joachim Fasting
540a6412e3
suitesparse_4_4: NIX_CFLAGS -> NIX_CFLAGS_COMPILE
Tested with nix-build -A suitesparse_4_4
2017-04-12 19:27:03 +02:00
Joachim Fasting
a883581ddb
suitesparse_4_2: remove bogus NIX_CFLAGS
NIX_CFLAGS should be NIX_CFLAGS_COMPILE; since pic is the default, we
simply remove the bogus declaration.

Tested with nix-build -A suitesparse_4_2
2017-04-12 19:26:58 +02:00
Frederik Rietdijk
767e459200 Merge pull request #22726 from matthewbauer/openblas-closure-size
openblas: disable static libs
2017-04-10 16:11:19 +02:00
Matthew Daiter
d712c04d25 suitesparse: refining CUDA support 2017-04-04 17:23:20 +02:00
Matthew Daiter
6f721ce534 suitesparse: add CUDA support 2017-03-29 15:47:51 +02:00
Matthew Bauer
bd8654f45d openblas: disable static libs
Disable static on openblas. This should save about 57M from closure sizes.
2017-02-12 18:45:44 -06:00
Matthew Daiter
82835f7eb3 cudnn51_cudatoolkit80: hash change 2017-02-08 18:40:32 +01:00
Anthony Cowley
084a76ef6f atlas: change platforms to unix
The build succeeds on darwin and linux.
2017-01-10 21:02:04 -05:00
Robert Helgesson
2990cd8aea
clblas-cuda: use system gtest library
Without this the build attempts to download the library.
2016-12-28 12:21:07 +01:00
mimadrid
25c984f940
htslib: 1.3.1 -> 1.3.2 2016-12-23 19:31:44 -05:00
Thomas Tuegel
bed668c051
openblas: refactor and set TARGET always 2016-12-10 16:49:45 -06:00
Nikolay Amiantov
be95ceaff2 treewide: quote URLs in my packages 2016-11-24 01:17:52 +03:00
Matthew Daiter
3897b344f3 cudnn51_cudatoolkit80: Init at 5.1-8.0 2016-11-21 14:51:39 +01:00
Falco Peijnenburg
5f5f0614b0 Support for ARM in openblas
Attempting to build openblas on ARM resulted in the error "unsopported system: armv7l_linux". This PR resolves that issue and some other issues that pop up when trying to build openblas for ARM.
2016-11-18 12:44:49 +01:00
Matthew Daiter
541b3fc7d2 cudnn5_cudatoolkit80: adding to main repo 2016-11-07 12:07:29 +01:00
Daiderd Jordan
3187b01720 Merge pull request #19816 from veprbl/octave_fixes
octave: darwin fix
2016-11-05 10:49:33 +01:00
Frederik Rietdijk
7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Dmitry Kalinkin
a8eb57d953
openblas: silence warnings on darwin
Without this one gets a lot of build time warnings like:

ld: warning: object file (/tmp/strip.2OzFn8) was built for newer OSX
version (10.9) than being linked (10.7)
2016-10-23 21:19:14 -04:00
Thomas Tuegel
a58ec829e4
openblas: disable some hardening flags 2016-10-22 12:57:40 -05:00
Frederik Rietdijk
9b66b5c2cc liblapack: use python2 2016-10-18 23:16:05 +02:00
Thomas Tuegel
d94abcb157
openblas: 0.2.17 -> 0.2.19 2016-09-09 19:42:54 -05:00
Michael Raskin
6b075ee8b1 openlibm: 0.4.1 -> 0.5.4 2016-09-06 19:31:38 +02:00
obadz
0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen
a18ee4acb7 treewide: Make explicit that 'dev' output of boost is used
Also fix one incorrect output in geant.
2016-08-23 04:32:21 +03:00
Tuomas Tynkkynen
d3705faa56 treewide: Use makeLibraryPath in LD_LIBRARY_PATHs 2016-08-23 00:14:00 +03:00
Robin Gloster
33e1c78ae3 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-16 07:54:01 +00:00
Nikolay Amiantov
0464600859 ipopt: 3.12.4 -> 3.12.6 2016-08-14 22:37:08 +03:00
Robin Gloster
1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen
21f17d69f6 treewide: Add lots of meta.platforms
Build-tested on x86_64 Linux & Mac.
2016-08-02 21:42:43 +03:00
Robin Gloster
1f04b4a566 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-21 00:56:43 +00:00
Josef Kemetmueller
f3dc4d9ec3 superlu: init at 5.2.1 2016-07-19 12:37:08 +00:00
Franz Pletz
f597e97236 atlas: Fix hardening 2016-07-13 19:30:52 +02:00
Franz Pletz
26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Joachim Fasting
46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1
bcftools: init at 1.3.1
2016-06-24 22:15:51 +02:00
mimadrid
d3da5cbf44
htslib: init at 1.3.1 2016-06-24 21:08:16 +02:00
artuuge
465d6a2113 Theano-cuda: init at 0.8.2 2016-06-20 01:06:07 +02:00
Robin Gloster
8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
artuuge
5b51f0bff9 clblas-cuda: init at git-20160505 2016-06-05 14:33:19 +02:00
Ian-Woo Kim
ff8985e7ab cudnn: add cudatoolkit to propagatedBuildInputs 2016-06-02 19:33:03 +02:00
Robin Gloster
2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Arseniy Seroka
c6b3aca4e2 Merge pull request #15654 from wavewave/magma
magma: init at 2.0.2
2016-05-26 01:02:14 +03:00