Commit Graph

2085 Commits

Author SHA1 Message Date
Pascal Wittmann
97ab2d40cb
Merge pull request #40614 from symphorien/ries
ries: init at 2018-04-11
2018-05-17 21:30:47 +02:00
Symphorien Gibol
ea7404dcd7 ries: init at 2018-04-11 2018-05-17 14:09:33 +02:00
R. RyanTM
de49ba6c3f nauty: 26r7 -> 26r10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/nauty/versions.

These checks were done:

- built on NixOS
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dreadnaut passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/copyg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/listg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/labelg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/amtog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/geng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/complg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/showg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/NRswitchg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/biplabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/addedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/deledgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/countg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/pickg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genrang passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/newedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/catg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/directg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentreeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genquarticg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/ranlabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/multig passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/planarg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentourng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/linegraphg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/watercluster2 had a zero exit code or showed the expected version
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretodot passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/subdivideg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/vcolg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/delptg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/cubhamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/twohamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/hamheuristic passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/converseg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genspecialg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbgL passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/shortg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/configure had a zero exit code or showed the expected version
- 38 of 40 passed binary check by having a zero exit code.
- 0 of 40 passed binary check by having the new version present in output.
- directory tree listing: https://gist.github.com/3bca602211d416ba58097f4f8880b6d0
- du listing: https://gist.github.com/4ac19efe14e18aae8fece0ec1a500bf1
2018-05-17 03:57:50 -07:00
Matthew Bauer
e0d6edddd7 pspp: provide default icons & settings
psppire needs to be wrapped so that it will work outside of GNOME
desktop. We provide hicolor-icon-theme & gsettings-desktop-schemas.

Note that at runtime, I still get this error:

- Cannot create a converter for `IBM864' to `UTF-8': Invalid argument

Possibly a locale issue.

Fixes #40558
2018-05-15 15:42:13 -05:00
Arcadio Rubio García
699fa7e953 star: 2.5.3a -> 2.6.0c (#40518) 2018-05-15 15:09:06 +02:00
Arcadio Rubio García
e4a2b70f91 minimap2: init at 2.10 2018-05-14 21:26:07 +01:00
Timo Kaufmann
053d1e0339 giac: re-add lapack without atlas (#40 (#40458)
giac: re-add lapack without atlas
2018-05-14 12:47:45 +02:00
Gabriel Ebner
0db951db83 elan: 0.3.2 -> 0.5.0 2018-05-14 09:40:13 +02:00
Timo Kaufmann
5550015b20 giac: remove liblapackWithAtlas dependency (#40430) 2018-05-13 18:33:51 +02:00
Maximilian Bosch
be53a0f2ef sasview: fix build (#40433)
The package breaks currently breaks with the following message:

```
fixed-output derivation produced path '/nix/store/5dh1mdj027ad8sprk12fqa5h5bpdxs5n-sasview' with sha256 hash '12k1w4yq1mzjxcp2cqb562c7cbwzhi54rsbmgi0fax0i1660q167' instead of the expected hash '05la54wwzzlkhmj8vkr0bvzagyib6z6mgwqbddzjs5y1wd48vpcx'
```

To fix the build the following changes were applied:

* Switched to latest master for now as the older releases have a broken
  `py.test` configuration and altering hashes.

* Added `checkPhase` which invokes `py.test` directly and drops
  duplicated files from `dist/tmpbuild`.

* Rebased the patches `pyparsing-fix.patch` and `local_config.patch` for
  the latest master revision.

Additionally refer to the discussion in #40381 for further reference.
2018-05-13 17:25:18 +02:00
R. RyanTM
47c672b4b1 picard-tools: 2.18.3 -> 2.18.4
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.4 with grep in /nix/store/k62ym9i08d0w9sgmdjjfyy4lf2n9ig7p-picard-tools-2.18.4
- directory tree listing: https://gist.github.com/4d9e3062e701681d9b53033dc9511663
2018-05-12 13:58:09 +02:00
John Ericson
ae429f8e55 yacas: 1.2.2 -> 1.6.1
They switched to cmake and talk about mingw cross, so I can kill
crossAttrs too.
2018-05-10 11:42:08 -04:00
Austin Seipp
04002e2b71 tamarin-prover: 1.3.1 -> 1.4.0
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-05-07 11:17:49 -05:00
Jörg Thalheim
d1ad5bf95d
Merge pull request #40113 from wchresta/tamarin/fix
tamarin-prover: Fix compile issues
2018-05-07 13:49:50 +01:00
Wanja Chresta
ee95ed11ca tamarin-prover: Fix compile issues 2018-05-07 12:18:06 +02:00
Gabriel Ebner
5347d89420
Merge pull request #40093 from r-ryantm/auto-update/lean
lean: 3.3.0 -> 3.4.1
2018-05-07 11:31:23 +02:00
R. RyanTM
639376aff6 lean: 3.3.0 -> 3.4.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/lean/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1/bin/lean -h’ got 0 exit code
- ran ‘/nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1/bin/lean --help’ got 0 exit code
- ran ‘/nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1/bin/leanpkg help’ got 0 exit code
- found 3.4.1 with grep in /nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1
- directory tree listing: https://gist.github.com/198504c00746718749b3019653fe78fd
2018-05-07 02:24:49 -07:00
Matthew Justin Bauer
4f08e5902f
Merge pull request #39972 from ikervagyok/mathematica
mathematica: add mesa, fix `libGL.so.1 not found` messages
2018-05-05 00:07:23 -05:00
Matthew Justin Bauer
a733bbfb07
Merge pull request #39740 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.2 -> 2.18.3
2018-05-04 17:21:50 -05:00
Lengyel Balazs
1f1e16af73 mathematica: add mesa, fix libGL.so.1 not found messages 2018-05-04 13:10:26 +02:00
Austin Seipp
301f14e993 symbiyosys: 2018.03.21 -> 2018.05.03
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-05-03 20:06:20 -05:00
Matthew Justin Bauer
b45ef79b74
Merge pull request #39907 from matthewbauer/work
Miscellaneous cleanups
2018-05-03 13:33:42 -05:00
Matthew Bauer
143978a477 treewide: remove platform assertions
linux: readd assertion
2018-05-03 13:09:20 -05:00
R. RyanTM
ef01f17c2d paml: 4.9g -> 4.9h
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/paml/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h/bin/chi2 -h’ got 0 exit code
- ran ‘/nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h/bin/chi2 --help’ got 0 exit code
- ran ‘/nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h/bin/chi2 help’ got 0 exit code
- found 4.9h with grep in /nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h
- directory tree listing: https://gist.github.com/b2a37e7cd2b4b41178f0698f3aac69e2
2018-05-03 15:13:15 +02:00
Matthew Justin Bauer
5e6f1abfd3
Merge pull request #39790 from matthewbauer/gnu-on-darwin
GNUs on Darwin
2018-05-01 13:56:54 -05:00
Matthew Justin Bauer
63666bf1d5
Merge pull request #37855 from Mounium/chem3
jmol init, pymol -> 2.1.0 and tidied up all-packages.nix
2018-05-01 11:01:21 -05:00
Matthew Justin Bauer
ea458f3bd7
Merge pull request #39630 from bcdarwin/conglomerate
conglomerate: init at 2017-09-10
2018-05-01 10:31:44 -05:00
Matthew Justin Bauer
278f59af49
Merge pull request #39586 from MatrixAI/labelImg
labelImg: init at 1.6.0
2018-05-01 10:24:18 -05:00
Matthew Bauer
57a4db2449 pspp: supports darwin 2018-05-01 00:45:05 -05:00
Will Dietz
4b7b083bcb treewide: stdenv.lib.platforms.gnu -> ... gnu ++ linux
Include all linux platforms.
2018-04-30 18:12:10 -05:00
R. RyanTM
4ea3841d7f picard-tools: 2.18.2 -> 2.18.3
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.3 with grep in /nix/store/q67hqz7716nf3c4f8rjmlpf2dqbb06rz-picard-tools-2.18.3
- directory tree listing: https://gist.github.com/6b71ce718f18ef6a48c05457cd0e583b
2018-04-30 11:43:21 -07:00
Jörg Thalheim
68e75fbb53
Merge pull request #39577 from veprbl/pr/pythia_8.235
pythia: 8.226 -> 8.235, enable lhapdf6 plugin
2018-04-28 11:44:37 +01:00
Ben Darwin
fa850e8fda conglomerate: init at 2017-09-10 2018-04-27 18:57:17 -04:00
Matthew Justin Bauer
914cc793e1
Merge pull request #39119 from veprbl/pr/sherpa_2.2.5
sherpa: 2.2.4 -> 2.2.5
2018-04-27 15:01:45 -05:00
Roger Qiu
ff3b88713c labelImg: init at 1.6.0 2018-04-27 12:01:24 +10:00
Dmitry Kalinkin
2f47c93ec8
sacrifice: set LD_LIBRARY_PATH for pythia plugins to work 2018-04-26 18:19:14 -04:00
Jörg Thalheim
838db3b85d
Merge pull request #39529 from r-ryantm/auto-update/ott
ott: 0.27 -> 0.28
2018-04-26 09:14:36 +01:00
R. RyanTM
769093b867 ott: 0.27 -> 0.28
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ott/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28/bin/ott --help’ got 0 exit code
- ran ‘/nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28/bin/ott.opt --help’ got 0 exit code
- found 0.28 with grep in /nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28
- directory tree listing: https://gist.github.com/177f63b8c23bae6301ced29fb0e617c4
2018-04-26 00:52:29 -07:00
Michiel Derhaeg
189a4f3656 verifast: 14.5 -> 18.02 (#39480) 2018-04-25 22:54:57 +01:00
Jörg Thalheim
18da50d8d3
Merge pull request #39503 from veprbl/pr/sacrifice_darwin_fix
sacrifice: fix runtime on darwin
2018-04-25 22:22:19 +01:00
Katona László
329d1ba69a jmol: made it runnable 2018-04-25 22:42:07 +02:00
Katona László
75d8c81868 pymol: 1.8.4 -> 2.1.0 2018-04-25 22:15:51 +02:00
Dmitry Kalinkin
c1f45f76ad
sacrifice: fix runtime on darwin 2018-04-25 14:58:23 -04:00
Lancelot SIX
8d58b1a0a0
Merge pull request #39360 from lsix/update_motu
motuclient: 1.4.00 -> 1.5.00
2018-04-25 11:46:19 +02:00
Michael Raskin
1f909a8dfc
Merge pull request #39403 from timokau/maxima-exl-testfailures-2
maxima-ecl: Disable more failing tests
2018-04-24 15:44:04 +00:00
Matthew Justin Bauer
d57e6466e0
Merge pull request #39377 from timokau/pari-pthread
pari: Make pthread optional, remove unstable
2018-04-24 10:03:01 -05:00
Timo Kaufmann
396b5d9c65 maxima-ecl: Disable more failing tests 2018-04-24 13:38:44 +02:00
Timo Kaufmann
75b0866d0c pari: Make pthread optional, remove unstable 2018-04-24 12:54:59 +02:00
Michael Raskin
bc6f7a9ccf
Merge pull request #39370 from timokau/singular-ntl
singular: Fix ntl dependency
2018-04-24 10:54:23 +00:00
Timo Kaufmann
ba389086de singular: Fix ntl dependency 2018-04-24 12:04:28 +02:00
Timo Kaufmann
b707c91814 maxima-ecl: Disable failing tests 2018-04-24 11:16:55 +02:00
Peter Simons
6799fcb42b R: 3.4.4 -> 3.5.0
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
2018-04-24 09:19:13 +02:00
Matthew Justin Bauer
a02d6c99af
Merge pull request #34014 from mnacamura/mathematica-l10n
mathematica: enable installation of localized editions
2018-04-23 11:58:34 -05:00
Lancelot SIX
9b5793790e
motuclient: 1.4.00 -> 1.5.00 2018-04-23 10:50:45 +02:00
Jörg Thalheim
c7d278ad07
Merge pull request #39351 from matthewbauer/calc-on-darwin
calc: cleanup expression
2018-04-23 08:07:13 +01:00
Matthew Bauer
63507ada7d calc: cleanup expression
Fixes #39321

(Still needs testing on Linux)
2018-04-22 19:01:25 -05:00
Joachim F
36d58a2cd2
Merge pull request #39332 from markuskowa/octopus-up
octopus: 7.2 -> 7.3
2018-04-22 17:47:26 +00:00
Markus Kowalewski
1d0267b2e7
octopus: 7.2 -> 7.3 2018-04-22 08:43:19 -07:00
Timo Kaufmann
b93e1fbbfb jmol: init at 14.29.12 2018-04-21 20:41:21 -05:00
Timo Kaufmann
be0b8f2cf6 palp: init at 2.1 2018-04-21 20:40:59 -05:00
Timo Kaufmann
7dc6b2e3c3 pynac: init at 0.7.19 2018-04-21 20:40:22 -05:00
Jörg Thalheim
f7785dd61c
Merge branch 'master' into minc_ecosystem 2018-04-21 20:18:27 +01:00
Jörg Thalheim
39e94277ba
Merge pull request #39197 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.1 -> 2.18.2
2018-04-21 19:21:15 +01:00
Matthew Justin Bauer
0d8e415d6b
Merge pull request #38969 from vbgl/coq-findlib
coq: fix installation of OCaml libraries
2018-04-20 18:02:52 -05:00
R. RyanTM
7d22bbe671 picard-tools: 2.18.1 -> 2.18.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.2 with grep in /nix/store/sp6gc6c6knpvpsmfdx8074qclcsgs931-picard-tools-2.18.2
- directory tree listing: https://gist.github.com/114857d15222eccda94501b5a871fb24
2018-04-20 00:44:45 -07:00
xeji
b3d50c7afa shogun: disable paralllel building
... to avoid sporadic failures
2018-04-19 12:27:00 -05:00
Matthew Justin Bauer
1bb28f26e8
Merge pull request #38810 from timokau/giac-improvements
giac: enable checks, separate outputs
2018-04-19 12:03:53 -05:00
Timo Kaufmann
ddb7c0e930 lrcalc: init at 1.2 (#38755) 2018-04-19 08:42:06 +02:00
Matthew Justin Bauer
853529b2ea
Merge pull request #38740 from r-ryantm/auto-update/cytoscape
cytoscape: 3.6.0 -> 3.6.1
2018-04-18 22:20:04 -05:00
Dmitry Kalinkin
3b69e6ef1a
sherpa: 2.2.4 -> 2.2.5 2018-04-18 15:34:23 -04:00
Vincent Laporte
76a43d765c coq: 8.8+beta1 -> 8.8.0 2018-04-18 14:37:04 +02:00
Matthew Justin Bauer
88098d58f2
Merge pull request #38701 from r-ryantm/auto-update/samtools
samtools: 1.7 -> 1.8
2018-04-17 12:03:42 -05:00
Matthew Justin Bauer
1ec5b0389d
Merge pull request #36582 from ryantm/auto-update/gromacs
gromacs: 4.6.7 -> 2018
2018-04-17 10:38:06 -05:00
Jörg Thalheim
5dc7a70f65
Merge pull request #38589 from badi/tlatools
Add TLAPS and TLA+ Toolbox
2018-04-17 14:51:35 +01:00
Vladimír Čunát
db071c4d1d
Merge #38702: Mark packages as broken (ZHF) 2018-04-17 13:36:20 +02:00
Badi Abdul-Wahid
c4ef846c92
tlaplusToolbox: init at 1.5.6 2018-04-16 22:18:47 -04:00
Badi Abdul-Wahid
d14a476054
tlaps: init at 1.4.3 2018-04-16 21:18:42 -04:00
Vincent Laporte
dc4a8435f0
symbiyosys: larger meta.platforms 2018-04-16 11:47:48 +00:00
Jan Tojnar
cee2c50748
celestia: clean up 2018-04-15 17:21:23 +02:00
Vincent Laporte
caec7dbb9f
coq: fix installation of OCaml libraries 2018-04-15 11:24:17 +00:00
Vincent Laporte
5f97adccdc
coq: move some attributes inside passthru 2018-04-15 11:24:17 +00:00
Gabriel Ebner
9df0c12cde elan: 0.3.0 -> 0.3.2 2018-04-13 09:28:28 +02:00
xeji
6866542751 torchPackages.{sundown,lbase64}: mark as broken 2018-04-12 23:04:04 +02:00
xeji
d63702a473 openmvg: mark as broken 2018-04-12 23:04:02 +02:00
Michael Raskin
783204bdbc
Merge pull request #38768 from timokau/singular-4.1.1
singular: 3.1.7 -> 4.1.1
2018-04-12 11:40:06 +00:00
Peter Simons
722d8226f4
Merge pull request #38812 from timokau/maxima-ecl
maxima: add various fixes, re-add ecl support
2018-04-12 11:43:15 +02:00
Timo Kaufmann
eb119b045a maxima: add various fixes, re-add ecl support 2018-04-12 00:46:40 +02:00
Timo Kaufmann
32cf225ad9 giac: enable checks, separate outputs 2018-04-11 22:56:21 +02:00
Gabriel Ebner
99ee7fd311 elan: add leanchecker proxy 2018-04-11 19:08:22 +02:00
Gabriel Ebner
a378389ac2 elan: 0.1.0 -> 0.3.0 2018-04-11 18:05:15 +02:00
Guillaume Maudoux
b7dbff3aac gap-minimal: fix ofBorg evaluation 2018-04-11 17:08:54 +02:00
Timo Kaufmann
fa3d0cef67 singular: 3.1.7 -> 4.1.1 2018-04-11 17:00:20 +02:00
Timo Kaufmann
6dc287802a gap: 4r8p3 -> 4r8p10 2018-04-11 15:22:03 +02:00
R. RyanTM
65e18bd38f cytoscape: 3.6.0 -> 3.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cytoscape/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
- found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
- directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
2018-04-11 01:12:34 -07:00
R. RyanTM
c478b6217f samtools: 1.7 -> 1.8
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/samtools/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/novo2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl -h’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl --help’ got 0 exit code
- ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl help’ got 0 exit code
- found 1.8 with grep in /nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8
- directory tree listing: https://gist.github.com/4673ea3645eb509035dcb386c4ad1da2
2018-04-10 13:04:09 -07:00
Gabriel Ebner
a14ae55c04 elan: init at 0.1.0 2018-04-10 18:38:45 +02:00
Ben Darwin
de2f36982b ezminc: init at 2017-08-29 2018-04-09 18:07:15 -04:00
Ben Darwin
cf2aac6a04 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
Ben Darwin
e90d1e8631 inormalize: init at 1.0.20 (develop branch) 2018-04-09 18:06:54 -04:00
Ben Darwin
54c543b03b n3: init at 1.0.20 2018-04-09 18:06:54 -04:00
Ben Darwin
f532f9f5f4 minc-widgets: init at "1.0.0" (package seems to lack a consistent version) 2018-04-09 18:06:33 -04:00
Ben Darwin
bd460f54a3 mni_autoreg: init at 0.99.70 2018-04-09 18:06:33 -04:00
Ben Darwin
082b3f1058 minc-tools: 2.3.00 -> 2.3.01 (develop branch) 2018-04-09 18:06:33 -04:00
Matthew Justin Bauer
6a74718e00
Merge pull request #36852 from rprospero/sasview-for-pr
sasview: init at 4.1.2
2018-04-09 14:07:40 -05:00
Matthew Justin Bauer
72a54f3b6d
Merge pull request #38260 from symphorien/tamarin-vim
tamarin-prover: install vim syntax highlighting files
2018-04-08 21:47:12 -05:00
Matthew Justin Bauer
209dce5ada
Merge pull request #38165 from r-ryantm/auto-update/picard-tools
picard-tools: 2.17.11 -> 2.18.1
2018-04-08 21:21:14 -05:00
Jörg Thalheim
1e9e19b2aa openmvs-unstable: 2017-05-01 -> 2018-05-26
fix build
2018-04-08 10:36:25 +01:00
Jörg Thalheim
62dc989963
Merge pull request #38595 from r-ryantm/auto-update/bcftools
bcftools: 1.7 -> 1.8
2018-04-08 09:36:13 +01:00
Jörg Thalheim
18fa54032a bcftools: python/perl is needed for shebangs 2018-04-08 09:35:20 +01:00
Austin Seipp
86c5420a2e nixpkgs: remove z3 4.5.0
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-04-07 23:02:59 -05:00
R. RyanTM
7b75bc79ef bcftools: 1.7 -> 1.8
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/bcftools/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/plot-vcfstats -h’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/plot-vcfstats --help’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools -h’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools --help’ got 0 exit code
- ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools help’ got 0 exit code
- found 1.8 with grep in /nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8
- directory tree listing: https://gist.github.com/c9ddd760c0c740dabaabeb604fbb8a5a
2018-04-07 20:11:48 -07:00
Jörg Thalheim
d307ab5ca3
Merge pull request #38416 from bcdarwin/beluga
beluga: init at 20180403
2018-04-06 00:34:47 +01:00
Jörg Thalheim
f444c1893b
Merge pull request #38478 from r-ryantm/auto-update/weka
weka: 3.8.2 -> 3.9.2
2018-04-05 19:21:45 +01:00
Jörg Thalheim
fb3b3d6394 weka: use makeWrapper 2018-04-05 19:21:16 +01:00
R. RyanTM
05bffb5a0d weka: 3.8.2 -> 3.9.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/weka/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.9.2 with grep in /nix/store/rv6aq5p1qacvpvaw9vszawzidsh8xdl9-weka-3.9.2
- directory tree listing: https://gist.github.com/c1ee16794a22549147d4d292cad986e5
2018-04-05 09:08:28 -07:00
Peter Hoeg
40643e67a5
Merge pull request #38237 from r-ryantm/auto-update/igv
igv: 2.4.9 -> 2.4.10
2018-04-05 16:01:36 +08:00
Ben Darwin
9f70551937 beluga: init at 20180403 2018-04-04 17:24:28 -04:00
Ben Darwin
d2c20d3a21 abella: 2.0.4 -> 2.0.5 2018-04-04 08:15:01 +02:00
Matthew Justin Bauer
2cd044b2fe
Merge pull request #37465 from timor/workcraft
workcraft: init at 3.1.9
2018-03-31 19:15:13 -05:00
Symphorien Gibol
d432cb7fdb tamarin-prover: install vim syntax highlighting files
note that this was tested on 13e74a838d
because tamarin-prover does not build on master...
2018-03-31 23:55:03 +02:00
R. RyanTM
f53175bf0b gtkwave: 3.3.87 -> 3.3.89
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gtkwave/versions.

These checks were done:

- built on NixOS
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/evcd2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fst2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2fst help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/fstminer --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2miner --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/lxt2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2lxt2 help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vcd2vzt help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vzt2vcd --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vztminer --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave --help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave help` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -V` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -v` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave --version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave version` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave -h` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave --help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/gtkwave help` and found version 3.3.89
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vermin -h` got 0 exit code
- ran `/nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89/bin/vermin -h` and found version 3.3.89
- found 3.3.89 with grep in /nix/store/njhhnirg6nvrvkx8n6fb3nzwzj491h34-gtkwave-3.3.89
- directory tree listing: https://gist.github.com/69f7a88d0a20c6860e8ee145090b3375
2018-03-31 12:23:34 -05:00
R. RyanTM
34257096e6 igv: 2.4.9 -> 2.4.10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.4.10 with grep in /nix/store/171fy8d969ynn0m74xi7dxvrbv9di37z-igv-2.4.10
- directory tree listing: https://gist.github.com/9164cca651385e7845f2ac52628d5ad7
2018-03-31 08:54:46 -07:00
Gabriel Ebner
5a7e6732c5 qalculate-gtk: 2.2.1 -> 2.3.0 2018-03-31 17:42:47 +02:00
R. RyanTM
d5f23bb90a picard-tools: 2.17.11 -> 2.18.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.1 with grep in /nix/store/nxd67d6cdp85kjy0g2qg4005rbwdfj75-picard-tools-2.18.1
- directory tree listing: https://gist.github.com/2fdec4f7617ad9bc0dfcd95a91d4abb6
2018-03-30 20:27:46 -07:00
Symphorien Gibol
262fff26ed giac: fix url
the previous url was a moving target and was updated at each point
release. Use a frozen source instead.
2018-03-30 21:32:56 +02:00
R. RyanTM
5fe6041341 python27Packages.spyder: 3.2.7 -> 3.2.8
Semi-automatic update generated by https://github.com/ryantm/nix-update tools.

This update was made based on information from https://repology.org/metapackage/spyder/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.2.8 with grep in /nix/store/q075j1pw2p0j7wldlcq0mx2kj018fgn4-spyder-3.2.8
- directory tree listing: https://gist.github.com/354834c75ad6240801f447820cd9067e
2018-03-30 19:57:40 +01:00
Jörg Thalheim
7d8d5d4f6f
Merge pull request #37670 from bgamari/libngspice
ngspice: Move shared library to a new derivation
2018-03-26 18:33:42 +01:00
Ben Gamari
a62fffd9a5 ngspice: Move shared library to a new derivation
It turns out that the build system does not support building both the
command-line tool and the shared library at the same time. Consequently
the ngspice derivation has not provided the command-line tools since the
shared library was enabled in #31166.
2018-03-25 19:55:40 -04:00
Maximilian Bosch
2379cfc4ed
geogebra: add archive.org link for 5-0-444-0
The `geogebra` package is subject to break as upstream removes versioned
packages from their download server when five new releases are comming.

This is why I had to fix almost monthly the package by bumping the
version (these can be found by running `git log --online | grep
geogebra:`). As the package didn't cause any issues for several months
now I guess that using `archive.org` seems to be a suitable solution for
now.

/cc @sternenseemann @matthewbauer
2018-03-25 10:08:43 +02:00
sternenseemann
275cd49731 geogebra: 5-0-382-0 -> 5-0-444-0 2018-03-25 01:51:04 -05:00
Matthew Justin Bauer
8f3091939b
Merge pull request #37752 from ryantm/fix-urls
treewide: use more HTTPS URLs
2018-03-25 00:40:17 -05:00
Ryan Mulligan
b189247ba0 treewide: use more HTTPS URLs
Uses the HTTPS url for cases where the existing URL has a permanent
redirect. For each domain, at least one fixed derivation URL was
downloaded to test the domain is properly serving downloads.

Also fixes jbake source URL, which was broken.
2018-03-24 22:04:25 -07:00
Robin Gloster
1b27260a0b
qgroundcontrol: 3.2.7 -> 3.3.0 2018-03-24 12:08:06 +01:00
John Wiegley
bee172501d
Merge pull request #37591 from vbgl/coq-88beta1
coq: init at 8.8+beta1
2018-03-23 22:09:06 -07:00
Daiderd Jordan
23d0c17130
picosat: fix darwin build
/cc ZHF #36454
2018-03-24 02:11:58 +01:00
Adam Washington
392def733b
Remove lint from Sasview package 2018-03-22 17:44:27 +00:00
Matthew Justin Bauer
64a1fd6c69
Merge pull request #37224 from matthewbauer/auto-update/jags
jags: 4.1.0 -> 4.3.0
2018-03-21 23:42:39 -05:00
Austin Seipp
011e70155b symbiyosys: 2018.03.07 -> 2018.03.21
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-21 16:05:10 -05:00
Ryan Mulligan
8f75a58081 verilator: 3.920 -> 3.922
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin_dbg -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin_dbg --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage_bin_dbg -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage_bin_dbg --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_profcfunc help` got 0 exit code
- found 3.922 with grep in /nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922
- directory tree listing: https://gist.github.com/04b5044a54bb4ff549696cbcd57cd88e
2018-03-21 13:09:37 -05:00
Vincent Laporte
6845b248d9 coq: init at 8.8+beta1 2018-03-21 18:06:28 +00:00
Adam Washington
01c1385dec
Make xhtml2pdf its own package in python-packages
xhtml2pdf now uses the main package html5lib with just an override to
pull the correct version number.
2018-03-21 13:46:17 +00:00
timor
42368e23f5 workcraft: init at 3.1.9 2018-03-21 14:27:12 +01:00
Matthew Justin Bauer
7452996ac6
Merge pull request #36381 from bgamari/bump-kicad
kicad-unstable: Bump git commit
2018-03-19 15:28:58 -05:00
Matthew Justin Bauer
964c32bcb3
Merge pull request #36846 from jbedo/snpeff
snpeff: 4.3t -> 4.3q
2018-03-19 12:26:33 -05:00
Jörg Thalheim
6e22dd9ee8
Merge pull request #37356 from volth/gephi-from-sources
gephi: build from sources
2018-03-19 11:23:43 +00:00
Matthew Justin Bauer
9f58d17d10
Merge pull request #37079 from ryantm/auto-update/picard-tools
picard-tools: 2.17.10 -> 2.17.11
2018-03-19 04:04:50 -05:00
volth
1e2eec169a gephi: build from sources 2018-03-19 08:45:24 +00:00
Matthew Justin Bauer
04e6a14df4
Merge pull request #36744 from samdroid-apps/add-nasc
nasc: init at 0.4.6
2018-03-19 03:41:24 -05:00
Gabriel Ebner
faf094adef
Merge pull request #36435 from timokau/origin/ecm-update
ecm: 6.4.4 -> 7.0.4
2018-03-18 13:08:34 +01:00
Gabriel Ebner
7072d11391
Merge pull request #37194 from ryantm/auto-update/gp2c
gp2c: 0.0.10 -> 0.0.10pl1
2018-03-18 12:04:08 +01:00
Gabriel Ebner
5693c5da8e
Merge pull request #36986 from ryantm/auto-update/fricas
fricas: 1.3.2 -> 1.3.3
2018-03-17 13:56:26 +01:00
Gabriel Ebner
5df4f227ec
Merge pull request #37009 from ryantm/auto-update/igv
igv: 2.4.8 -> 2.4.9
2018-03-17 13:43:23 +01:00
Gabriel Ebner
fe7d82e6a6
Merge pull request #36933 from Ma27/fix-aspino
aspino: fix build
2018-03-17 13:06:23 +01:00
Maximilian Bosch
29bc0a00a1
aspino: fix build
Aspino patched `libglucose` for their own uses, however they currently
depend on glucose v4.0.
(see e31c3b4e57/patches)

The patches don't apply properly on `glucose-4.1` anymore, furthermore
the new source directory caused the `bootstrap.sh` from `aspino` which
was supposed to apply the patches and recompile the setup to break.

Furthermore some minor changes to the derivation were introduced:

- upgraded from `2016-01-31` to `2017-03-09`
- the name contains an `-unstable-` infix as upstream has no releases
- instead of a `patchPhase` the `postPatch` hook will be used for
  `substituteInPlace` to keep advanced patching features from `nixpkgs`
  available.
- `patchShebangs` will be called to avoid impurities because of the
  implicit reliance on `/bin/sh`
- added myself as second maintainer to have more people available in
  case of any further breackage

See https://hydra.nixos.org/build/70688471/log
See ticket #36453
2018-03-17 13:02:51 +01:00
Matthew Bauer
e2d12274c2 jags: 4.1.0 -> 4.3.0
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:
- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 4.3.0 with grep in /nix/store/aw897502z5bcn6dw6rp7jca90flfrjab-JAGS-4.3.0
2018-03-17 02:02:11 -05:00
Austin Seipp
c108e67825
Merge pull request #37063 from ryantm/auto-update/ltl2ba
ltl2ba: 1.1 -> 1.2b1
2018-03-16 17:12:02 -05:00
Ryan Mulligan
3e2f544c39 gp2c: 0.0.10 -> 0.0.10pl1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -v` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` and found version 0.0.10pl1
- found 0.0.10pl1 with grep in /nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1
- directory tree listing: https://gist.github.com/27f1364bf90110b801070fcb28c64e0e
2018-03-16 12:51:03 -07:00
Peter Simons
276001c51b
Merge pull request #37180 from peti/r-updates
Update R and its packages
2018-03-16 17:37:19 +01:00
Tuomas Tynkkynen
ef64208eba Merge commit '3ab2949' from staging into master
Conflicts:
	pkgs/development/compilers/llvm/6/llvm.nix
	pkgs/servers/home-assistant/component-packages.nix
2018-03-15 22:30:56 +02:00
Peter Simons
d46a4b9829 R: 3.4.3 -> 3.4.4 2018-03-15 18:32:14 +01:00
Ryan Mulligan
892244dda0 picard-tools: 2.17.10 -> 2.17.11
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.17.11 with grep in /nix/store/xmlvcz212yl8bij12jpqibhv8c8mqabs-picard-tools-2.17.11
- found 2.17.11 in filename of file in /nix/store/xmlvcz212yl8bij12jpqibhv8c8mqabs-picard-tools-2.17.11
2018-03-15 01:16:28 -07:00
Ryan Mulligan
9e0ce6562a ltl2ba: 1.1 -> 1.2b1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 1.2b1 in filename of file in /nix/store/jx5s7w6bmd6lfqvxl2lly3ggd4k9ncax-ltl2ba-1.2b1
2018-03-14 21:06:53 -07:00
Joachim F
51474dbf7c
Merge pull request #36627 from ryantm/auto-update/ngspice
ngspice: 26 -> 27
2018-03-14 21:13:22 +00:00
Joachim F
c1ce856fa4
Merge pull request #36591 from ryantm/auto-update/gtkwave
gtkwave: 3.3.86 -> 3.3.87
2018-03-14 21:04:51 +00:00
Joachim F
b46fe9398b
Merge pull request #36658 from ryantm/auto-update/paml
paml: 4.9c -> 4.9g
2018-03-14 20:20:47 +00:00
Joachim F
d703988c2b
Merge pull request #36483 from ryantm/auto-update/calc
calc: 2.12.6.3 -> 2.12.6.6
2018-03-14 19:37:27 +00:00
Ryan Mulligan
9b4c82d366 igv: 2.4.8 -> 2.4.9
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.4.9 with grep in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
- found 2.4.9 in filename of file in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
2018-03-14 12:04:23 -07:00
Ryan Mulligan
bf06f445dd fricas: 1.3.2 -> 1.3.3
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` got 0 exit code
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` and found version 1.3.3
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/efricas --help` got 0 exit code
- found 1.3.3 with grep in /nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3
2018-03-14 08:04:41 -07:00
Tuomas Tynkkynen
2fec9c6e29 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/development/tools/build-managers/conan/default.nix
2018-03-13 23:04:18 +02:00
volth
7ec0471242 treewide: s/xlibs/xorg/g (#36889) 2018-03-13 10:16:03 +00:00
Daiderd Jordan
a6bf2b21d5
Merge pull request #36873 from jfrankenau/update-bcal
bcal: 1.7 -> 1.8
2018-03-12 19:49:20 +01:00
Johannes Frankenau
59cc47d802 bcal: 1.7 -> 1.8
The tests failed for a good reason on Darwin and should not have been
disabled. The issue has been resolved upstream with version 1.8 which
now also supports AArch64.
2018-03-12 18:36:26 +01:00
Vincent Laporte
903f4dd3d4
clingo: fix build on non-sandboxed darwin 2018-03-12 17:07:18 +00:00
Vincent Laporte
eedc173276
clingo: fix URL 2018-03-12 16:51:54 +00:00
Michael Raskin
fafeac185b tptp: 7.0.0 -> 7.1.0 2018-03-12 16:58:21 +01:00
Adam Washington
73ed353d27 sasview: init at 4.1.2
Sasview is a data fitting and analysis package for small angle
scattering data.  More information can be found at
https://www.sasview.org.

There is some unfortunate cruft to this commit.  SasView uses the
xhtml2pdf python package, which has a specific version of html5lib as
a dependency.  This module manually loads that version into sasview.
I haven't made xhtml2pdf available as its own package due to these
circumstances.
2018-03-12 09:22:06 +00:00
Justin Bedo
f48ff649fe
snpeff: 4.3t -> 4.3q 2018-03-12 16:03:44 +11:00
Jan Malakhovski
7079e744d4 Merge branch 'master' into staging
Resolved the following conflicts (by carefully applying patches from the both
branches since the fork point):

   pkgs/development/libraries/epoxy/default.nix
   pkgs/development/libraries/gtk+/3.x.nix
   pkgs/development/python-modules/asgiref/default.nix
   pkgs/development/python-modules/daphne/default.nix
   pkgs/os-specific/linux/systemd/default.nix
2018-03-10 20:38:13 +00:00
Michael Raskin
d44221d768
Merge pull request #36726 from ryantm/auto-update/yarp
yarp: 2.3.68 -> 2.3.70.2
2018-03-10 18:41:05 +00:00
Ben Gamari
d39cd7aad5 kicad-unstable: 2017-12-11 -> 2018-03-10
This is much closer to what will become the final kicad 5 release.
2018-03-10 13:13:18 -05:00
Michael Raskin
2093d4781d sage: set platforms to the set where I can build it; Hydra ARM builds seem to fail 2018-03-10 13:50:11 +01:00
Sam Parkinson
28a67ec16a
nasc: init at 0.4.6 2018-03-10 22:21:36 +11:00
Ryan Mulligan
acf77c3888 yarp: 2.3.68 -> 2.3.70.2
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpidl_rosmsg -h` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpidl_rosmsg --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpidl_rosmsg help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpserver --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp version` and found version 2.3.70.2
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp-config --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp-config --version` and found version 2.3.70.2
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdev -h` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdev --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdev help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpmanager-console --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdatadumper --help` got 0 exit code
- found 2.3.70.2 with grep in /nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2
- found 2.3.70.2 in filename of file in /nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2
2018-03-09 19:41:31 -08:00
Graham Christensen
05db7ca765
Merge pull request #36553 from ryantm/auto-update/gmsh
gmsh: 3.0.5 -> 3.0.6
2018-03-09 17:25:29 -05:00
Graham Christensen
d2429e0045
Merge pull request #36537 from ryantm/auto-update/ginac
ginac: 1.7.2 -> 1.7.4
2018-03-09 17:20:53 -05:00
Daiderd Jordan
43be4ebfb1
Merge pull request #36581 from matthewbauer/darwin-fixes
darwin: fixes
2018-03-09 19:32:54 +01:00
Ryan Mulligan
49272f60dd paml: 4.9c -> 4.9g
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 4.9g in filename of file in /nix/store/70p59yxnlzhbj8ig1ax8lrrsdbcf37zp-paml-4.9g
2018-03-09 07:22:27 -08:00
Ryan Mulligan
9e3690e87c ngspice: 26 -> 27
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 27 with grep in /nix/store/73sh9hf5c9fjgh962pd1ac16kr8dvzxg-ngspice-27
- found 27 in filename of file in /nix/store/73sh9hf5c9fjgh962pd1ac16kr8dvzxg-ngspice-27
2018-03-09 02:55:13 -08:00
Austin Seipp
de1cb85b20 symbiyosys: 2018.02.04 -> 2018.03.07
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-08 21:23:20 -06:00
Ryan Mulligan
7844ae2366 gtkwave: 3.3.86 -> 3.3.87
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/shmidcat -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/shmidcat --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin -h` and found version 3.3.87
- found 3.3.87 with grep in /nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87
- found 3.3.87 in filename of file in /nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87
2018-03-08 17:24:39 -08:00
Ryan Mulligan
695a62e777 gromacs: 4.6.7 -> 2018
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.bash -h` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.bash --help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.bash help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.zsh -h` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.zsh --help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.zsh help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx -h` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx --version` and found version 2018
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx -h` and found version 2018
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx help` and found version 2018
- found 2018 with grep in /nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018
2018-03-08 15:30:04 -08:00
Matthew Bauer
54e2c28b09 darwin: disable broken packages 2018-03-08 17:21:17 -06:00
wchresta
c6d3f0d3c6 tamarin-prover: 1.3.0 -> 1.3.1 2018-03-08 21:03:18 +01:00
Ryan Mulligan
365a2e5acc gmsh: 3.0.5 -> 3.0.6
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.0.6 with grep in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
- found 3.0.6 in filename of file in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
2018-03-08 11:29:17 -08:00
Ryan Mulligan
e729cebdc9 ginac: 1.7.2 -> 1.7.4
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar -h` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar --help` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar help` got 0 exit code
- found 1.7.4 with grep in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
- found 1.7.4 in filename of file in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
2018-03-08 08:40:52 -08:00
Ryan Mulligan
89fca29099 gfan: 0.6 -> 0.6.2
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2/bin/gfan --help` got 0 exit code
- found 0.6.2 with grep in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
- found 0.6.2 in filename of file in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
2018-03-08 07:52:17 -08:00
Ryan Mulligan
6edbf98d34 calc: 2.12.6.3 -> 2.12.6.6
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -V` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -h` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/piforever -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/piforever -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped -v` and found version 2.12.6.6
- found 2.12.6.6 with grep in /nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6
- found 2.12.6.6 in filename of file in /nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6
2018-03-07 20:08:56 -08:00
Timo Kaufmann
77d1fdb2c1 ecm: 6.4.4 -> 7.0.4 2018-03-07 18:28:26 +01:00
Robin Gloster
50cdd5f02b
shogun: add patch for json-c 0.13 2018-03-05 22:00:03 +01:00
Vladimír Čunát
565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Roger Qiu
30ba063dc3 gpredict: Added hamlib to buildInputs to control radios, and wrapped with wrapGAppsHook to fix gnome errors 2018-03-04 16:30:21 +11:00
Timo Kaufmann
4f239f9d49 sage: Make build more platform independant 2018-03-04 01:36:31 +01:00
Austin Seipp
7270f2139a tlaplus: init at 1.5.6
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-02 21:20:54 -06:00
Frederik Rietdijk
810dd0f984 Merge remote-tracking branch 'upstream/master' into HEAD 2018-03-01 20:00:42 +01:00
Ryan Mulligan
a4809a57e1 root: 6.10.08 -> 6.12.06
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/pq2 -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -V` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -v` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` and found version 6.12.06
- found 6.12.06 with grep in /nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06

cc "@veprbl"
2018-03-01 15:39:08 +01:00
Tuomas Tynkkynen
b8b2225f6b Merge remote-tracking branch 'upstream/master' into staging 2018-03-01 06:09:20 +02:00
Ryan Mulligan
75072efb4b tulip: 4.9.0 -> 5.1.0
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config -h` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --version` and found version 5.1.0
- found 5.1.0 with grep in /nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0

cc ""
2018-02-28 20:33:39 +00:00
Tuomas Tynkkynen
34f95d92a2 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/applications/misc/pytrainer/default.nix
	pkgs/development/tools/pew/default.nix
	pkgs/tools/misc/you-get/default.nix
2018-02-28 20:52:49 +02:00
Ryan Mulligan
0c69b50356 picard-tools: 2.17.4 -> 2.17.10
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.17.10 with grep in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10
- found 2.17.10 in filename of file in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10

cc "@jbedo"
2018-02-28 15:02:46 +00:00
Ryan Mulligan
2fe9ca05e4 pari: 2.9.3 -> 2.9.4
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/tex2mail help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -V` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -v` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --version` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` and found version 2.9.4
- found 2.9.4 with grep in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4
- found 2.9.4 in filename of file in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4

cc "@ertes @raskin @AndersonTorres"
2018-02-28 14:27:07 +00:00
Peter Simons
09f18d3baf
Merge pull request #36094 from ryantm/auto-update/wxmaxima-17.10.1-to-18.02.0
wxmaxima: 17.10.1 -> 18.02.0
2018-02-28 13:40:02 +01:00
Ryan Mulligan
9394e70b0d verilator: 3.900 -> 3.920
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_profcfunc help` got 0 exit code
- found 3.920 with grep in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920
- found 3.920 in filename of file in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920

cc "@thoughtpolice"
2018-02-28 12:36:17 +01:00
Ryan Mulligan
84091451ec wxmaxima: 17.10.1 -> 18.02.0
Semi-automatic update. These checks were performed:

- built on NixOS
- found 18.02.0 with grep in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0
- found 18.02.0 in filename of file in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0

cc "@peti"
2018-02-27 19:05:41 -08:00
Frederik Rietdijk
405407fcf5
Merge pull request #35680 from NixOS/python-unstable
Python: last major updates package set
2018-02-27 09:16:47 +00:00
Frederik Rietdijk
b45845f228
Merge pull request #35713 from ryantm/auto-update/fricas-1.3.1-to-1.3.2
fricas: 1.3.1 -> 1.3.2
2018-02-27 08:12:42 +00:00
Frederik Rietdijk
671e405332
Merge pull request #35720 from ryantm/auto-update/igv-2.4.6-to-2.4.8
igv: 2.4.6 -> 2.4.8
2018-02-27 08:09:50 +00:00
Ryan Mulligan
be7cd20d3c lp_solve: 5.5.2.0 -> 5.5.2.5
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` got 0 exit code
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` and found version 5.5.2.5
- found 5.5.2.5 with grep in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5
- found 5.5.2.5 in filename of file in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5

cc "@smironov"
2018-02-26 21:57:53 -08:00
Ryan Mulligan
d1dc4cae54 igv: 2.4.6 -> 2.4.8
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
- found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

cc "@mimadrid"
2018-02-26 19:11:52 -08:00
Frederik Rietdijk
cd528ddd8e python: spyder: 3.2.6 -> 3.2.7 2018-02-26 18:44:17 +01:00
Ryan Mulligan
4440d28fbd fricas: 1.3.1 -> 1.3.2
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` got 0 exit code
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` and found version 1.3.2
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/efricas --help` got 0 exit code
- found 1.3.2 with grep in /nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2

cc "@sprock"
2018-02-26 06:28:48 -08:00
adisbladis
e046d8bc08
Merge pull request #35555 from ryantm/auto-update/bcftools-1.6-to-1.7
bcftools: 1.6 -> 1.7
2018-02-26 17:39:46 +08:00
Ryan Mulligan
72a22296dd cryptoverif: 1.22 -> 1.28
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28/bin/cryptoverif --help` got 0 exit code
- found 1.28 with grep in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
- found 1.28 in filename of file in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
2018-02-26 08:32:20 +01:00
Jan Tojnar
c65cd765f6
gpredict: 1.3 → 2.2.1 2018-02-26 05:26:41 +01:00
adisbladis
e8d0563638
Merge pull request #35566 from ryantm/auto-update/bowtie2-2.3.4-to-2.3.4.1
bowtie2: 2.3.4 -> 2.3.4.1
2018-02-26 09:47:03 +08:00
adisbladis
780e1a34e1
Merge pull request #35583 from ryantm/auto-update/cbc-2.9.5-to-2.9.9
cbc: 2.9.5 -> 2.9.9
2018-02-26 09:33:53 +08:00
Ryan Mulligan
79795b44f9 cbc: 2.9.5 -> 2.9.9
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` and found version 2.9.9
- found 2.9.9 with grep in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
- found 2.9.9 in filename of file in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
2018-02-25 14:03:37 -08:00
Nikolay Amiantov
7f1b8d744f cntk: fix build without CUDA 2018-02-25 22:50:20 +03:00
Nikolay Amiantov
3179002f61 mxnet: 0.11.0 -> 1.1.0 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
6f96122d5b caffe: add nccl support 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
25079ad238 caffe: depend on opencv3
openblas is used since it's propagated from OpenCV and ATLAS compiled without
architecture-specific optimizations is generally slower than OpenBLAS as I
heard.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov
1bfca90bf7 cntk: 2.2 -> 2.4
Comment for `broken` indicates that it never worked at all, which is strange
since on my machine it did. Anyway it works now for me.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov
08f8ad26b3 treewide: unquote homepage in my packages
I don't like this personally but we have #27809 as a precedent.
2018-02-25 22:24:08 +03:00
Ryan Mulligan
bc730862d5 bowtie2: 2.3.4 -> 2.3.4.1
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` and found version 2.3.4.1
- found 2.3.4.1 with grep in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
- found 2.3.4.1 in filename of file in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
2018-02-25 09:45:04 -08:00
Ryan Mulligan
9af7602b8a bcftools: 1.6 -> 1.7
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help` got 0 exit code
- found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
2018-02-25 09:02:06 -08:00
Jan Tojnar
a31d98f312
tree-wide: autorename gnome packages to use dashes 2018-02-25 17:41:16 +01:00
Alexander V. Nikolaev
0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
Alexander V. Nikolaev
1bc1909e5b treewide: transition from mesa_glu to libGLU 2018-02-24 17:05:43 +02:00
Gabriel Ebner
f5b173ffbc qalculate-gtk: 2.1.0 -> 2.2.1 2018-02-24 11:54:53 +01:00
Timo Kaufmann
89162cdd29 sage: explicitly use gfortran6
The recent change from gfortran=gfortran6 to gfortran=gfortran7 broke
the build.
2018-02-23 17:00:21 +01:00
Johannes Frankenau
74029a21bf bcal: init at 1.7 2018-02-21 00:05:16 +01:00
Vladimír Čunát
b5aaaf87a7
Merge staging and PR #35021
It's the last staging commit (mostly) built on Hydra,
and a minimal fix for Darwin regression in pysqlite.
2018-02-16 09:13:12 +01:00
John Wiegley
90252481bf coq: 8.7.1 -> 8.7.2 2018-02-15 23:12:43 -08:00
Vincent Laporte
e75009ecdc
eprover: fix build in non-GCC environments 2018-02-14 22:46:12 +00:00
Frederik Rietdijk
672bb6b4ab Merge remote-tracking branch 'upstream/master' into HEAD 2018-02-14 21:30:08 +01:00
Jörg Thalheim
6ec8fe0408 z3: also needs setuptools 2018-02-14 10:01:25 +00:00
Timo Kaufmann
0713bde50f sage: Don't build docs by default
This makes the HTML-docs an default-off option. Inline documentation
(`matrix-plot??`) is still available and HTML docs are available online.

Motivation: Get below the Hydra output size limit.
2018-02-13 17:52:41 +01:00
Will Dietz
2974ed9266 avy: fixes to work with clang and musl 2018-02-13 09:44:52 -06:00
Will Dietz
cbdd20878e cvc4: build in parallel 2018-02-13 09:44:45 -06:00
Will Dietz
12e60c232a cvc4: patch up fpu_control usage 2018-02-13 09:44:45 -06:00
Will Dietz
4c767417ea picosat: fix ar and ranlib usage for cross 2018-02-13 09:44:32 -06:00
Will Dietz
36b2706916 picosat: fixup include for unistd.h 2018-02-13 09:44:32 -06:00
Will Dietz
46cbded0de boolector: patch usage of ar and ranlib for cross
eep.
2018-02-13 09:44:32 -06:00
Will Dietz
9138d055bf boolector: fix missing stdint.h include 2018-02-13 09:44:31 -06:00
Jörg Thalheim
a0a3f674a7
Merge pull request #34094 from markuskowa/octopus-pr
octopus: init at 7.2
2018-02-10 14:14:01 +00:00
Jörg Thalheim
08d1400816
Merge pull request #34530 from unode/samtools-old
samtools-old: init at 0.1.19
2018-02-10 08:34:26 +00:00
Jörg Thalheim
80b096b2b3
Merge pull request #34531 from unode/raxml
RAxML: init at 8.2.11 (SSE3 & MPI)
2018-02-10 08:32:19 +00:00
Frederik Rietdijk
50a9d51a09 Merge commit '30d031b5d8d05422586043c3f105f4d9110e4f59' into HEAD 2018-02-08 12:14:07 +01:00
Peter Simons
fa23ff4a7d
Merge pull request #34651 from mnacamura/r-darwin-libcxx
R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin
2018-02-07 08:31:10 +01:00
Tuomas Tynkkynen
4c6c919a31 Merge remote-tracking branch 'upstream/master' into HEAD
Conflicts:
	pkgs/os-specific/linux/kernel/generic.nix
2018-02-07 03:41:24 +02:00
Renato Alves
154d1d2f19
samtools: 1.6 -> 1.7 2018-02-06 15:38:00 +01:00
Mitsuhiro Nakamura
f4a031c63f R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin 2018-02-06 18:57:12 +09:00
Tuomas Tynkkynen
9548028a22 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/os-specific/linux/cpupower/default.nix
2018-02-06 04:11:23 +02:00
Timo Kaufmann
272e930827 sage: fix non-deterministic build failures
The build was failing on some machines because of a `find` command that
touched files in different orders on different machines.

That confused `make`s timestamp mechanism.
2018-02-05 15:03:24 +01:00
Austin Seipp
0e371a60a5 symbiyosys: 2018.01.10 -> 2018.02.04
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-02-04 11:59:35 -06:00
Frederik Rietdijk
c1d79509a0
Merge pull request #34553 from NixOS/python-unstable
Python package updates
2018-02-04 13:29:23 +00:00
Frederik Rietdijk
aaa50d506e python.pkgs.spyder: fix expression
Note I still get
```
This application failed to start because it could not find or load the
Qt platform plugin "xcb"
in "".
```
but that may be because I run it from the store which is not support for
Qt5 applications.
2018-02-04 10:17:35 +01:00
Bjørn Forsman
6b834384f6 bitscope: create derivations with version info
So far the store paths produced by the bitscope derivations have been
version-less. Fix it.
2018-02-03 21:14:50 +01:00
Frederik Rietdijk
c7f535c82d spyder: 3.2.4 -> 3.2.6 2018-02-03 17:43:30 +01:00
Renato Alves
65ea5f8857
samtools_0_1_19: init at 0.1.19
samtools-1.5 already exists but some software requires the older version
2018-02-02 21:49:50 +01:00
Renato Alves
05889c52b9
RAxML: init at 8.2.11 (SSE3 & MPI)
This can potentially be extended to cover all the other compilation
targets. SSE3-PTHREADS and MPI being the most commonly used.
2018-02-02 18:31:40 +01:00
Vladimír Čunát
c9171e5a4c
Merge branch 'master' into staging
Hydra: ?compare=1430035
2018-01-30 19:51:33 +01:00
Renato Alves
b22e4976cb
muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
Markus Kowalewski
ec6e7c6eeb
octopus: init at 7.2 2018-01-27 16:23:04 -08:00
Tuomas Tynkkynen
c3a658deb1 Merge remote-tracking branch 'upstream/master' into staging 2018-01-27 21:53:16 +02:00
Alexey Shmalko
38fbc93f46
Merge pull request #34156 from arcadio/star
star: init at 2.5.3a
2018-01-27 17:02:16 +02:00
Vladimír Čunát
2d2dbe083f
Merge branch 'master' into staging
Hydra: ?compare=1429281
2018-01-27 09:14:22 +01:00
Timo Kaufmann
b223662ad1 sage: 8.0 -> 8.1, fix sandbox build
The sandboxed build was failing, because it relied heavily on
/usr/bin/env. This is fixed with a lot of shebang patching (both
to system packages and to sage-internal packages).
2018-01-26 14:42:24 +01:00
adisbladis
7a2d35d9db
Merge pull request #34119 from arcadio/master
igv: 2.3.98 -> 2.4.6
2018-01-25 18:33:49 +08:00
Samuel Leathers
efdb0983da
Merge pull request #34199 from arcadio/kallisto
kallisto: init at 0.43.1
2018-01-24 20:43:24 -07:00
Arcadio Rubio García
a7333e9ced kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
Arcadio Rubio García
72d675b23c star: init at 2.5.3a 2018-01-24 16:07:15 +00:00
Frederik Rietdijk
769342b37b Merge remote-tracking branch 'upstream/master' into HEAD 2018-01-24 14:17:49 +01:00
Daiderd Jordan
5569851745
R: fix dylib install_name on darwin 2018-01-24 00:23:16 +01:00
Frederik Rietdijk
8510550b77
Merge pull request #34169 from Infinisil/add/almonds
almonds: init at 2015-12-27
2018-01-23 17:37:54 +01:00
Silvan Mosberger
8e8a259df4
almonds: init at 2015-12-27 2018-01-23 14:16:28 +01:00
adisbladis
266979a360
Merge pull request #34125 from arcadio/bwa
bwa: 0.7.16a -> 0.7.17
2018-01-23 20:12:56 +08:00
adisbladis
b0603f514b
Merge pull request #34139 from arcadio/bedtools
bedtools: 2.26.0 -> 2.27.1
2018-01-23 12:56:01 +08:00
Will Dietz
a5a64cfcb1 lean: fixup nativeBuildInputs vs buildInputs 2018-01-22 17:19:02 -06:00
adisbladis
7490d4d698
Merge pull request #34140 from arcadio/picard
picard-tools: 2.7.1 -> 2.17.4
2018-01-22 23:57:10 +08:00
Arcadio Rubio García
612953567d bowtie2: 2.3.3.1 -> 2.3.4 2018-01-22 12:28:06 +00:00
Arcadio Rubio García
12c5dc343f picard-tools: 2.7.1 -> 2.17.4 2018-01-22 12:16:26 +00:00
Arcadio Rubio García
c75e91a374 bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
Arcadio Rubio García
0d05bcae8c bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
Arcadio Rubio García
550e6146d4 igv: 2.3.98 -> 2.4.6 2018-01-21 21:07:44 +00:00
Sarah Brofeldt
adf80590ae
Merge pull request #33924 from markuskowa/molden-pr
molden: init at 5.7
2018-01-21 12:19:48 +01:00
Mitsuhiro Nakamura
1ed47cf214 mathematica: enable installation of localized editions
For now English (default) and Japanese editions only.
Fill out information in `l10ns.nix` to add the other localized editions.
Example usage: `mathematica.override { lang = "ja"; }` derives Japanese edition.
2018-01-19 21:42:52 +09:00
Miguel Madrid Mencía
8fb2be6772
weka: 3.8.1 -> 3.8.2 2018-01-18 15:25:35 +01:00
Yegor Timoshenko
506c89c30a maintainers: remove mornfall from packages 2018-01-17 05:17:33 +00:00
Markus Kowalewski
1c1e49a5c5
molden: init at 5.7 2018-01-15 23:06:41 -08:00
Ashley Gillman
245a67df8b dcm2niix: cmake is native, style 2018-01-15 16:53:28 +10:00
Ashley Gillman
271d4a7ca0 dcm2niix: init at 1.0.20170130 2018-01-15 16:45:03 +10:00
David Asabina
b986078593 bitscope: refactored to pass nixpkgs-lint
The linter (nixpkgs-lint) was not able to find the bitscope packages
because `recurseIntoAttrs` was not applied to the suite's set.

The name supplied to `buildFHSUserEnv` produces a binary that
corresponds to the binary names in the deb packages (e.g.: bitscope-dso,
bitscope-chart, bitscope-logic, etc), however; this name does not
constitute a valid nixpkgs name. Valid nixpkgs names satisfy the
`/(.*)(-[0-9].*)$/` pattern, therefore a valid name is merged into the
derivation produced by `buildFHSUserEnv`.
2018-01-14 20:00:10 +01:00
adisbladis
ff94fbc416
Merge pull request #33851 from vbgl/why3-0.88.3
why3: 0.88.1 -> 0.88.3
2018-01-15 01:27:45 +08:00
adisbladis
a41d7b9ea1
Merge pull request #33839 from mimadrid/update/gephi-0.9.2
gephi: 0.9.1 -> 0.9.2
2018-01-15 01:10:52 +08:00
Vincent Laporte
aee1cebda7
why3: 0.88.1 -> 0.88.3 2018-01-14 05:51:06 +00:00
Miguel Madrid Mencía
eb21bf3d99
cytoscape: 3.5.1 -> 3.6.0 2018-01-13 23:21:49 +01:00
Miguel Madrid Mencía
111d4dbc06
gephi: 0.9.1 -> 0.9.2 2018-01-13 23:18:26 +01:00
adisbladis
5f232de6cd
qgroundcontrol: 2.9.4 -> 3.2.7, unbreak build 2018-01-13 04:03:38 +08:00
Luz
e056315a3e librepcb-unstable: init at 2017-12-29 (#33630) 2018-01-11 09:20:00 +00:00
Austin Seipp
4d4340805b symbiyosys: 2017.12.06 -> 2018.01.10
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-01-10 14:00:58 -06:00
Symphorien Gibol
bf49c616ee giac: fix build
giac was broken somewhere between 310ad4 and b33b4a, see
https://hydra.nixos.org/build/67137469
libgfortran.so.3 was not found
2018-01-10 18:42:38 +01:00
Samuel Dionne-Riel
7b97c8c0c8 treewide: homepage+src updates (found by repology, #33263) 2018-01-05 20:42:46 +01:00
Austin Seipp
ebeb95d18b z3: 4.5.0-2017-11-06 -> 4.6.0
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-01-03 21:44:56 -06:00
Vladimír Čunát
1fcd92ce92
Merge branch 'master' into staging
A few thousand rebuilds from master, again.
Hydra: ?compare=1422362
2017-12-31 09:53:49 +01:00
Orivej Desh
e87a82b010 cntk: mark as broken
It never succeeded to build.  @abbradar did not respond at
94dc37d622
2017-12-31 08:14:14 +00:00
John Ericson
4d2b763817
Merge pull request #26805 from obsidiansystems/cross-elegant
Make cross compilation elegant
2017-12-30 22:58:02 -05:00
John Ericson
046f091e0d treewide: Don't use envHook anymore
This commits needs a MAJOR audit as I oftentimes just guessed which of
`$hostOffset`, `$targetOffset`, or a fixed offset should be used.
2017-12-30 22:04:22 -05:00
Austin Seipp
ff555bdaeb tamarin-prover: enable tests
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:39:38 -06:00
Austin Seipp
bae2e7ceb3 nixpkgs: add sapic as a dependency to tamarin-prover
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp
3813ab2589 nixpkgs: init sapic 0.9
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp
a31bdc0739 nixpkgs: add 'graphviz' to tamarin-prover dependencies
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 19:01:29 -06:00
Austin Seipp
abcfa6f608 nixpkgs: add tamarin-prover 1.3.0 (dev) tool
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-12-30 18:23:15 -06:00
David Asabina
810ec3f8bd bitscope: init at 2017-12-28 2017-12-30 21:58:27 +01:00
Frederik Rietdijk
2d0bead714 Merge remote-tracking branch 'upstream/master' into HEAD 2017-12-30 17:04:54 +01:00
Orivej Desh
77cc63950a wxmaxima: build with cmake
Fixes reported version number: see
https://github.com/NixOS/nixpkgs/pull/31657#issuecomment-354414642

"make check" did not run any tests with autotools, and is not defined with
cmake. ("make test" is not defined too.)
2017-12-29 21:00:03 +00:00
Vladimír Čunát
f29000b002
Merge branch 'master' into staging
Hydra: ?compare=1421760
2017-12-29 10:13:33 +01:00
Robin Gloster
ee1c85aee9 mariadb: lib -> connector-c 2017-12-29 02:18:35 +01:00
Nick Hu
8640e286b4 fdr: 4.2.0 -> 4.2.3 2017-12-29 02:01:31 +01:00
Vincent Laporte
b320538f4c
coq: lablgtk is only needed for coqide 2017-12-23 11:11:56 +00:00
John Wiegley
f962f33593 Specify the coq version in a more consistent location 2017-12-21 01:24:35 -08:00
Justin Bedo
a49c91f655
snpeff: 4.3p -> 4.3t 2017-12-21 10:52:26 +11:00
Vincent Laporte
4c454a3208
coq: minor cleaning 2017-12-18 15:30:36 +00:00
Orivej Desh
c13c93f03b drat-trim: fix build on darwin 2017-12-17 13:19:34 +00:00
Orivej Desh
fe9bf3ed23
Merge pull request #32648 from berce/upstream-kicad
kicad: init unstable at version 2017-12-11
2017-12-17 05:03:29 +00:00
Orivej Desh
c780dba59c kicad: show version 2017-12-17 05:02:51 +00:00
Orivej Desh
f314157041 kicad-unstable: set version 2017-12-17 04:49:00 +00:00
Orivej Desh
d8f668c7b3
Merge pull request #32643 from kini/drat-trim
drat-trim: init at 2017-08-31
2017-12-17 00:31:25 +00:00
Keshav Kini
7b6b074829 drat-trim: init at 2017-08-31
DRAT-trim is a tool which can be used to make SAT solvers (such as
glucose and glucose-syrup, which are in nixpkgs) more useful by
checking their work.  It has become well-accepted in the SAT solver
development community and has been used in the annual SAT competitions
for the last few years.
2017-12-17 00:27:52 +00:00
Bert Moens
5e0344dce9 kicad: add support for oce, ngspice and scripting 2017-12-17 00:20:45 +00:00
Bert Moens
af5272f599 kicad: add unstable version 2017-12-17 00:10:28 +00:00
Vincent Laporte
12c5fe3e2d ocamlPackages.cairo2: 0.4.6 -> 0.5 2017-12-16 12:14:35 +01:00
John Wiegley
40627000f7 coq_8_7: 8.7.0 -> 8.7.1 2017-12-15 22:09:15 -08:00
John Wiegley
2e93f93b2a z3_4_5_0: New expression, to access the release version's API 2017-12-14 23:32:37 -08:00
Pascal Wittmann
aacf756ed0
Merge pull request #32538 from vbgl/ott-0.27
ott: 0.25 -> 0.27
2017-12-14 09:07:46 +01:00
Vincent Laporte
b212125b54
Merge pull request #32250 from vbgl/coq-clean
coq_HEAD, coqPackages_8_4: remove
2017-12-11 18:13:24 +01:00
Vincent Laporte
1ccd3b9755
ott: 0.25 -> 0.27 2017-12-10 11:49:05 +00:00
Vladimír Čunát
2309acf723
Merge branch 'master' into staging 2017-12-09 21:00:07 +01:00
markuskowa
66da9b9f8f gpredict: init at 1.3 (#32436) 2017-12-09 09:45:29 +00:00
Vladimír Čunát
6f5d989478
treewide: checkMeta fixes for x86_64-linux 2017-12-07 07:50:47 -05:00
Orivej Desh
9f8ec7e4d3 stp: disable parallel building 2017-12-07 08:52:42 +00:00