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1530 Commits

Author SHA1 Message Date
Mauricio Collares
8711501e96 sage: fix passthru.kernelspec regression 2022-05-25 14:54:52 -07:00
alyaeanyx
7275bd17fd
libqalculate, qalculate-gtk: 4.1.1 -> 4.2.0 2022-05-25 21:05:36 +02:00
Artturin
0c4d65b21e treewide: stdenv.glibc -> glibc 2022-05-25 15:51:20 +03:00
ajs124
7d66e93927
Merge pull request #173402 from imsofi/update/geogebra 
geogebra: 5-0-680-0 -> 5-0-706-0
 2022-05-22 16:14:06 +02:00
Sofi
382f65bd30
geogebra: 5-0-680-0 -> 5-0-706-0 2022-05-22 15:04:08 +02:00
Justin Bedő
48a33d0bbe
Merge pull request #171597 from NixOS/r-updates 
R 4.2.0
 2022-05-22 07:20:19 +10:00
7c6f434c
91c498f0f2
Merge pull request #173543 from collares/sage-gdlib 
sageWithDoc: clean up sagedoc.nix
 2022-05-21 04:31:03 +00:00
Mauricio Collares
727e5a1473 sageWithDoc: cleanup sagedoc.nix 2022-05-20 11:03:25 -07:00
Sergei Trofimovich
68f3647eae
Merge pull request #172998 from trofi/workaround-fno-common-for-eukleides 
eukleides: add -fcommon workaround
 2022-05-19 07:09:54 +00:00
Mauricio Collares
21ae98f5f0 sageWithDoc: add sage-with-env to buildInputs 2022-05-18 15:53:02 -07:00
Someone Serge
b96c7caea6
mxnet: mark cuda build as broken 2022-05-18 09:48:45 +03:00
Justin Bedo
e052be0a84
Merge remote-tracking branch 'origin/master' into r-updates 2022-05-17 20:57:40 +10:00
7c6f434c
1d4c47ea08
Merge pull request #171511 from collares/sage-9.6 
sage: 9.5 -> 9.6
 2022-05-16 09:51:47 +00:00
Mauricio Collares
26a87ada65 sage: 9.5 -> 9.6 2022-05-15 19:23:40 -04:00
Mauricio Collares
10b16ea5e7 sageWithDoc: make jupyter-sphinx available for docbuild 2022-05-15 12:45:25 -04:00
Mauricio Collares
09ab2aba13 lrcalc: 1.2 -> 2.1 2022-05-15 12:45:24 -04:00
Jörg Thalheim
3d4109f3a4
Merge pull request #172588 from res0Nanz/patch-1 
wolfram-engine: fix quotes in installation script
 2022-05-14 19:27:38 +01:00
AndersonTorres
91621176e0 primecount: 7.2 -> 7.3 2022-05-14 11:01:08 -03:00
AndersonTorres
d488388cfc primesieve: 7.8 -> 7.9 2022-05-14 10:56:13 -03:00
Sergei Trofimovich
d45dfee2d6 eukleides: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: eukleides_build/triangle.o:(.bss+0x28): multiple definition of `A';
        eukleides_build/quadrilateral.o:(.bss+0x18): first defined here
 2022-05-14 10:28:22 +01:00
Guanpeng Xu
cefda1c7ca
Mathematica: refactored (#172136) 2022-05-13 14:16:50 +00:00
Thomas Gerbet
1ba72de384 ripser: 1.0.0 -> 1.2.1 
https://github.com/Ripser/ripser/releases/tag/v1.0.1
https://github.com/Ripser/ripser/releases/tag/v1.1
https://github.com/Ripser/ripser/releases/tag/v1.2
https://github.com/Ripser/ripser/releases/tag/v1.2.1
 2022-05-12 08:26:44 -07:00
Sandro
324a5be95c
Merge pull request #172580 from collares/singular-osx 
singular: fix darwin build
 2022-05-12 01:33:52 +02:00
Yu-Chen Ding
e98f71d477
wolfram-engine: fix quotes in installation script 2022-05-12 01:29:53 +08:00
Mauricio Collares
15cf12c0ac singular: fix darwin build 2022-05-11 12:08:20 -04:00
davidak
7dd05c6052
Merge pull request #171662 from Hexadecimaaal/wolfram-engine 
wolfram-engine: infinite loop on `WolframKernel`; `wolframscript` available in package but not installed
 2022-05-11 02:53:23 +02:00
Lassulus
d369c0c118
Merge pull request #163869 from r-ryantm/auto-update/gurobi 
gurobi: 9.5.0 -> 9.5.1
 2022-05-10 11:46:25 +02:00
Hexadecimal
94c5433df2
wolfram-engine: fix wrappers 2022-05-07 10:13:57 +08:00
Bruno Bzeznik
5661ca1a2d adolc: init at 2.7.2 2022-04-29 10:38:40 -05:00
Justin Bedo
5eb9f35c44
R: 4.1.3 -> 4.2.0 
Patch needed to past test, as there are extra warnings
in a sandbox build due to lack of internet access.
x
 2022-04-27 09:55:00 +10:00
Gabriel Ebner
5838726cb9 calculix: 2.17 -> 2.19 2022-04-25 12:56:36 +02:00
Gabriel Ebner
94f1225197 calculix: fix build with gfortran 10 2022-04-25 12:51:12 +02:00
Mauricio Collares
0f29ab871f sage: update test expectations 2022-04-21 09:08:41 +02:00
Mauricio Collares
5029df7737 giac: 1.6.0-47 -> 1.9.0-5 2022-04-21 09:08:40 +02:00
Sandro
ab1640b19b
Merge pull request #166909 from fedeinthemix/wolfram-engine-2 2022-04-11 13:53:05 +02:00
Federico Beffa
55a070a616 wolfram-for-jupyter-kernel: init at 0.9.2 
Also, add a script 'wolfram-notebook' to easily start a jupyter
notebook for working with the Wolfram Engine.

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-04-11 11:54:09 +02:00
Federico Beffa
2055f85304 wolfram-engine: init at 13.0.1 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-04-11 11:54:03 +02:00
Fabian Affolter
394c9ba5e4
Merge pull request #168132 from r-ryantm/auto-update/calc 
calc: 2.14.0.14 -> 2.14.1.0
 2022-04-10 20:56:16 +02:00
Doron Behar
357ca2e62c
Merge pull request #168130 from alyaeanyx/qalculate-gtk-4.1.1 2022-04-10 16:39:23 +03:00
R. Ryantm
6ebcd043e2 calc: 2.14.0.14 -> 2.14.1.0 2022-04-10 12:33:50 +00:00
alyaeanyx
0fc77bcb21
qalculate-gtk: 4.1.0 -> 4.1.1 2022-04-10 13:59:30 +02:00
Frederik Rietdijk
1d63f89caa cudaPackages: overhaul of how we package cuda packages 
There are many different versions of the `cudatoolkit` and related
cuda packages, and it can be tricky to ensure they remain compatible.

- `cudaPackages` is now a package set with `cudatoolkit`, `cudnn`, `cutensor`, `nccl`, as well as `cudatoolkit` split into smaller packages ("redist");
- expressions should now use `cudaPackages` as parameter instead of the individual cuda packages;
- `makeScope` is now used, so it is possible to use `.overrideScope'` to set e.g. a different `cudnn` version;
- `release-cuda.nix` is introduced to easily evaluate cuda packages using hydra.
 2022-04-09 08:50:22 +02:00
Artturi
f087013f8e
Merge pull request #167679 from collares/sage-networkx27 
sage: post python-unstable/staging-next merge fixes
 2022-04-07 23:29:10 +03:00
Mauricio Collares
79cc492ceb sage: set CXXFLAGS to match CFLAGS in sage-env 2022-04-07 14:20:43 +02:00
Mauricio Collares
384117bb95 sage: import scipy 1.8 update patch 2022-04-07 14:20:42 +02:00
Mauricio Collares
9e80144a8b sage: refresh ipython update patch for ipython 8.1 compat 2022-04-07 14:06:55 +02:00
Mauricio Collares
49cddf1a78 sage: import networkx 2.7 update patch 2022-04-07 14:06:55 +02:00
Frederik Rietdijk
a7bbda4271
Merge pull request #167250 from SomeoneSerge/bump-cudatoolkit 
cudatoolkit: 10.2 -> 11.5
 2022-04-07 13:40:43 +02:00
R. Ryantm
241de3da58 wxmaxima: 21.11.0 -> 22.03.0 2022-04-07 01:42:41 +00:00
Someone Serge
1b74f75b59
python310Packages.caffe: mark as broken 2022-04-06 00:44:37 +03:00
Someone Serge
565201d769
python310Packages.mxnet: mark cudaSupport broken 2022-04-06 00:44:36 +03:00
Someone Serge
226fabb1a6
python3Packages.mxnet: pass explicit cuda gencodes 2022-04-06 00:44:35 +03:00
ajs124
dcf19469a8
Merge pull request #167192 from jb55/remove-me 
remove jb55 as maintainer from some packages
 2022-04-04 17:36:00 +02:00
William Casarin
a1390787c3 remove jb55 as maintainer from some packages 
I no longer use these and don't have much incentive to maintain them :(
 2022-04-04 08:10:42 -07:00
R. Ryantm
372b7d8db4 ginac: 1.8.2 -> 1.8.3 2022-03-26 19:25:45 +00:00
Lucas Hoffmann
f3bda2f2c0 docs: replace defunct git://github.com urls with https:// 2022-03-25 11:21:42 +01:00
davidak
6ea8d5ee71
Merge pull request #165297 from Stunkymonkey/treewide-pname-version-17 
treewide: rename name to pname&version
 2022-03-24 16:38:33 +01:00
Felix Buehler
3bc5196252 treewide: rename name to pname&version 2022-03-23 22:55:50 +01:00
ajs124
6324abc93e libpng_apng: drop 
It's been the same as libpng since 8164d28, because
`libpng_apng = libpng.override { apngSupport = true; };`, but `apngSupport ? true`
 2022-03-23 03:20:11 +01:00
Sandro
4348e36456
Merge pull request #164248 from Stunkymonkey/treewide-fetchFromGitHub-2 2022-03-22 02:13:45 +01:00
Doron Behar
6f227f03cb qalculate-gtk: 4.0.0 -> 4.1.0 2022-03-20 16:04:47 +08:00
Bobby Rong
b3549ba290
Merge pull request #164837 from bobby285271/pantheon-eco 
various: remove elementary-icon-theme from buildInputs & vala 0.56 fixes
 2022-03-20 13:34:08 +08:00
Bobby Rong
88aee703c2
various: remove elementary-icon-theme from buildInputs 
These apps don't hardcode their icon themes and the icon theme
is no longer picked up by wrapGAppsHook by default. User may
also able to choose to use icon themes of their choice so pulling
them to XDG_DATA_DIRS is mostly no use.
 2022-03-19 17:16:30 +08:00
7c6f434c
c8677c4da2
Merge pull request #164193 from NixOS/r-updates 
R 4.1.2 -> 4.1.3 and rPackages bump
 2022-03-18 17:27:53 +00:00
Felix Buehler
f8684d34e9 cntk: switch to fetchFromGitHub 2022-03-16 23:23:09 +01:00
github-actions[bot]
0ed928e4ab
Merge master into staging-next 2022-03-14 12:01:26 +00:00
hqurve
9a409fc502 sage: link doc in jupyter kernel 2022-03-13 17:45:56 -04:00
Mauricio Collares
5240cbc0d8 sage: adapt tachyon interface for 0.99.3 2022-03-13 16:53:22 -03:00
R. Ryantm
31d64f7498 gurobi: 9.5.0 -> 9.5.1 2022-03-12 17:28:03 +00:00
Justin Bedo
3739a7819d
R: 4.1.2 -> 4.1.3 2022-03-10 22:31:13 +11:00
github-actions[bot]
6787116890
Merge master into staging-next 2022-02-28 00:02:07 +00:00
7c6f434c
da576d8a4a
Merge pull request #161876 from FRidh/sage-python 
Sage: make it possible to extend the Python runtime environment with additional packages
 2022-02-27 19:02:59 +00:00
AndersonTorres
ed2b1b4b90 Merge branch 'master' into staging-next 2022-02-26 21:04:25 -03:00
R. Ryantm
21a1125f37 gmsh: 4.9.4 -> 4.9.5 2022-02-25 14:21:11 -08:00
K900
cb2cfba6f7 treewide: switch all desktop file generators to new API 
Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
 2022-02-25 13:40:38 -08:00
Frederik Rietdijk
330d9344d2 sage: make it possible not to rebuild sage-tests 
Requiring sage-tests as build input just so it gets build is a bit
unfortunatey but understandable. This commit introduces an option to not
add sage-tests as a dependency. This is preferred in case e.g. Python
packages are added to the environment.
 2022-02-25 21:27:14 +01:00
Frederik Rietdijk
7442533bf1 sage: support adding extra Python packages to environment 
mysage = sage.override { extraPythonPackages = ps: with ps; [ dask ]; };

Note that the sage-tests are executed again as well, which is not very nice.
 2022-02-25 21:18:23 +01:00
github-actions[bot]
cd6011bf17
Merge master into staging-next 2022-02-24 00:02:03 +00:00
Renaud
65ecaa9903
Merge pull request #150078 from r-ryantm/auto-update/gurobi 
gurobi: 9.1.2 -> 9.5.0
 2022-02-23 22:08:43 +01:00
github-actions[bot]
10c4b97b44
Merge master into staging-next 2022-02-23 12:01:11 +00:00
Renaud
359d63179e
Merge pull request #160360 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.22.0 -> 4.0.0
 2022-02-23 08:30:49 +01:00
github-actions[bot]
f8210665fc
Merge staging-next into staging 2022-02-22 00:02:51 +00:00
Mauricio Collares
586b897693 sage: update test expectations for stack_data 0.2.0 2022-02-21 14:49:16 -08:00
Wanja Zaeske
2d67cc2bf6 removing maintainer wucke13 from some packages 2022-02-21 22:58:18 +01:00
markuskowa
48ab0d0233
Merge pull request #160924 from qbg/submit/mathematica-13.0.1 
mathematica: 13.0.0 -> 13.0.1
 2022-02-20 10:23:22 +01:00
R. RyanTM
286ecff9e0
getdp: 3.3.0 -> 3.4.0 
(#150127)
 2022-02-19 22:41:33 +01:00
qbg
f4f52d9d70 mathematica: 13.0.0 -> 13.0.1 
https://wolfram.com/mathematica/quick-revision-history.html#v130
 2022-02-19 11:26:53 -06:00
R. Ryantm
581628a7f4 qalculate-gtk: 3.22.0 -> 4.0.0 2022-02-16 19:33:07 +00:00
Mauricio Collares
b38b641ff3 sageWithDoc: fix Sphinx warnings which break docgen 2022-02-15 22:37:34 -03:00
7c6f434c
a6a1e14e52
Merge pull request #159741 from r-ryantm/auto-update/polymake 
polymake: 4.5 -> 4.6
 2022-02-14 20:52:03 +00:00
7c6f434c
117fdae4b6
Merge pull request #159351 from collares/sage-ipython-8 
sage: don't test for Cython source code in tracebacks (temporarily)
 2022-02-14 17:18:21 +00:00
markuskowa
e7a2652f31
Merge pull request #159311 from r-ryantm/auto-update/gmsh 
gmsh: 4.9.2 -> 4.9.4
 2022-02-13 11:48:17 +01:00
R. Ryantm
ac4ec1ef75 gretl: 2021d -> 2022a 2022-02-12 21:08:09 -08:00
R. Ryantm
154d72f526 ginac: 1.8.1 -> 1.8.2 2022-02-12 20:56:29 -08:00
R. Ryantm
0948b62a1f polymake: 4.5 -> 4.6 2022-02-13 04:50:20 +00:00
Robert Scott
83ea8999d4 gmsh: enable tests 2022-02-12 16:15:57 +00:00
Robert Scott
61dc066799 gmsh: enable for darwin 2022-02-12 16:13:53 +00:00
Mario Rodas
0ff383436d
Merge pull request #159009 from r-ryantm/auto-update/bcal 
bcal: 2.3 -> 2.4
 2022-02-12 08:39:47 -05:00
7c6f434c
bff729efd3
Merge pull request #158992 from collares/R-stackprotector 
R: disable stack protector on aarch64-darwin
 2022-02-12 11:32:56 +00:00
Mauricio Collares
c763432549 sage: don't test for Cython source code in tracebacks (temporarily) 2022-02-11 19:13:34 -03:00