In a few cases it wasn't clear so I left them as-is.
While visiting these moved other things to nativeBuildInputs
when it was clear they were one of these cases:
* makeWrapper
* archive utilities (in order to unpack src)
* a few of these might no longer be needed but leaving for another day
Unlike docker (cli only) this probably won't work on darwin.
github.com/docker/libnetwork/networkdb
can't load package: package github.com/docker/libnetwork/ns: build constraints exclude all Go files in /private/tmp/nix-build-docker-proxy-7b2b1feb1de4817d522cc372af149ff48d25028e.drv-0/go/src/github.com/docker/libnetwork/ns
/cc ZHF #45961
Since years I'm not maintaining anything of the list below other
than some updates when I needed them for some reason. Other people
is doing that maintenance on my behalf so I better take me out but
for very few packages. Finally!
This makes the command ‘nix-env -qa -f. --arg config '{skipAliases =
true;}'’ work in Nixpkgs.
Misc...
- qtikz: use libsForQt5.callPackage
This ensures we get the right poppler.
- rewrites:
docbook5_xsl -> docbook_xsl_ns
docbook_xml_xslt -> docbook_xsl
diffpdf: fixup
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.
This update was made based on information from https://repology.org/metapackage/singularity/versions.
<details><summary>Version release notes (from GitHub)</summary>
Greetings Singularity containerizers!
This release contains fixes for a _high severity_ security issue affecting Singularity 2.3.0 through 2.5.1 on kernels that support overlay file systems (CVE-2018-12021). A malicious user with network access to the host system (e.g. ssh) could exploit this vulnerability to access sensitive information on disk and bypass directory image restrictions like those preventing the root file system from being mounted into the container.
Singularity 2.5.2 should be installed immediately, and all previous versions of Singularity should be removed. The vulnerability addressed in this release affects kernels that support overlayfs. If you are unable to upgrade immediately, you should set `enable overlay = no` in `singularity.conf`.
In addition, this release contains a large number of bug fixes. Details follow:
## [Security related fixes](https://cve.mitre.org/cgi-bin/cvename.cgi?name=2018-12021)
- Removed the option to use overlay images with `singularity mount`. This
flaw could allow a malicious user accessing the host system to access
sensitive information when coupled with persistent ext3 overlay.
- Fixed a race condition that might allow a malicious user to bypass directory
image restrictions, like mounting the host root filesystem as a container
image
## Bug fixes
- Fix an error in malloc allocation #1620
- Honor debug flag when pulling from docker hub #1556
- Fix a bug with passwd abort #1580
- Allow user to override singularity.conf "mount home = no" with --home option
#1496
- Improve debugging output #1535
- Fix some bugs in bind mounting #1525
- Define PR_(S|G)ET_NO_NEW_PRIVS in user space so that these features will
work with kernels that implement them (like Cray systems) #1506
- Create /dev/fd and standard streams symlinks in /dev when using minimal dev
mount or when specifying -c/-C/--contain option #1420
- Fixed * expansion during app runscript creation #1486
As always, please report any bugs to:
https://github.com/singularityware/singularity/issues/new</details>
These checks were done:
- built on NixOS
- /nix/store/3igwiqi311c18w13y5r7zrgpcnzylg9l-singularity-2.5.2/bin/singularity passed the binary check.
- Warning: no invocation of /nix/store/3igwiqi311c18w13y5r7zrgpcnzylg9l-singularity-2.5.2/bin/run-singularity had a zero exit code or showed the expected version
- 1 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 2.5.2 with grep in /nix/store/3igwiqi311c18w13y5r7zrgpcnzylg9l-singularity-2.5.2
- directory tree listing: https://gist.github.com/ed6db09ad43a19c6abf2d35d15ef489c
- du listing: https://gist.github.com/9bd23f4d6ee86a9eb2ba7ec5c986741d
