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53332 Commits

Author SHA1 Message Date
Maximilian Bosch
ee897b64ff
pythonPackages.mahotas: fix build, move expression 
See https://hydra.nixos.org/build/80828287

Moves `mahotas` out of `python-packages.nix` into its own file and fixes
broken test cases by skipping them using nosetest's `@nottest`
annotation.

These tests broke from time to time in a sandbox and are therefore
considered impure.

Addresses #45960
 2018-09-10 11:32:58 +02:00
R. RyanTM
1700698691 lttng-ust: 2.10.1 -> 2.10.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
lttng-ust
 2018-09-10 07:57:54 +02:00
Will Dietz
2fc255cdb0
Merge pull request #46351 from dtzWill/update/kconfig-4.11 
kconfig-frontends: update and fixups
 2018-09-09 22:45:12 -05:00
Will Dietz
8d2cd63c1b spidermonkey_52: don't use jemalloc w/musl 2018-09-09 17:50:54 -05:00
Ryan Mulligan
73ae8e53e2 rPackages.RPostgres: fix configure paths and includes 
closes #46208
 2018-09-09 14:37:28 -07:00
Josef Kemetmüller
6f891ff66e pythonPackages.joblib: Disable flaky test (#46439) 
The test `test_nested_parallelism_limit` fails on darwin.
 2018-09-09 22:42:17 +02:00
Josef Kemetmüller
5e0c468737 pythonPackages.fiona: Fix darwin build (#46435) 2018-09-09 22:40:49 +02:00
xeji
12fae6e5c7
Merge pull request #46440 from knedlsepp/fix-pythonPackages.libusb1 
pythonPackages.libusb1: Fix darwin build
 2018-09-09 22:25:06 +02:00
Josef Kemetmüller
4ab5625c95 castxml: Fix build (#46442) 2018-09-09 22:18:34 +02:00
Franz Pletz
4d11a37c69
spdlog_1: init 1.1.0 2018-09-09 22:15:06 +02:00
Franz Pletz
8473168bef
mtxclient: init at 0.1.0 2018-09-09 22:15:06 +02:00
Josef Kemetmüller
b633fc4fb4 pythonPackages.libusb1: Disable flaky test 2018-09-09 22:09:34 +02:00
xeji
d18aaceda6
Merge pull request #46438 from knedlsepp/fix-pythonPackages.flask_ldap_login 
pythonPackages.flask_ldap_login: Fix build
 2018-09-09 22:00:59 +02:00
Josef Kemetmüller
b667a76eac pythonPackages.flask_ldap_login: Disable on python3 2018-09-09 21:48:54 +02:00
Josef Kemetmüller
a4b040e69f pythonPackages.cozy: Disable on python2 (#46436) 
Cozy does not support python2.
 2018-09-09 21:33:45 +02:00
Vladimír Čunát
d0413d1ac9
racket: warn to avoid repeating #45952 2018-09-09 21:19:29 +02:00
Josef Kemetmüller
063aa389df pythonPackages.libusb1: Fix darwin build 2018-09-09 20:56:34 +02:00
Josef Kemetmüller
25f8753bf4 pythonPackages.flask_ldap_login: 0.3.0 -> 0.3.4 2018-09-09 20:39:46 +02:00
Josef Kemetmüller
d4e89680d2 pythonPackages.flask_ldap_login: Fix build 2018-09-09 20:39:15 +02:00
Jörg Thalheim
201ee19758
Merge pull request #46377 from dasJ/nonhttp 
treewide: Use http/https for homepages
 2018-09-09 15:50:25 +01:00
Orivej Desh
be32141cb0 webkitgtk24x: prune libtool files 
This fixes the build of claws-mail.override { enablePluginFancy = true; },
otherwise the linking fails to find transitive gst libraries.
 2018-09-09 14:11:32 +00:00
Orivej Desh
2a5fa8b016 webkitgtk24x: do not warn about expansion-to-defined 
It fills the log.
 2018-09-09 14:11:32 +00:00
Jörg Thalheim
c4d8d4b4d6 pyre: substituting %VERSION% in Makefile no longer required 2018-09-09 14:44:54 +01:00
Jörg Thalheim
b989e6f623
Merge pull request #46393 from teh/master 
pyre: 0.9.0 -> 0.11.0
 2018-09-09 14:42:27 +01:00
Daiderd Jordan
939debc7a4
bullet: fix darwin build 
The examples fail with an opengl related issue:

    Undefined symbols for architecture x86_64:
      "SimpleOpenGL3App::SimpleOpenGL3App(char const*, int, int, bool)", referenced from:
          _main in main_opengl_single_example.o
      "_useShadowMap", referenced from:
          GL_ShapeDrawer::drawScene(btDiscreteDynamicsWorld const*, bool, int) in GL_ShapeDrawer.o
    ld: symbol(s) not found for architecture x86_64

And the tests need an extra dependencly, possibley related to
https://github.com/bulletphysics/bullet3/issues/819

    ld: library not found for -lBussIK

/cc ZHF #45961
 2018-09-09 15:34:03 +02:00
xeji
17c51ef436
Merge pull request #45925 from markuskowa/ompi-up 
slurm: 17.11.9-2 -> 18.08.0-1
 2018-09-09 14:20:00 +02:00
Maximilian Bode
c020a59ccd pythonPackages.tifffile: fix python 2 build (#46415) 2018-09-09 12:13:36 +02:00
Maximilian Bode
dfcf07d9d3 pythonPackages.django-raster: fix build (#46413) 2018-09-09 11:34:18 +02:00
Tom Hunger
9110f768cf pyre: 0.9.0 -> 0.11.0 2018-09-08 22:22:00 +01:00
Markus Kowalewski
7dd2f4ec9c
pyslurm: 20180811 -> 20180908 2018-09-08 23:16:37 +02:00
xeji
113f4d7b44
pythonPackages.persistent: fix build (#46364) 
Documentation-related tests failed, the docs didn't build correctly
because of missing dependencies sphinx and manuel. Add them.
 2018-09-08 21:35:33 +02:00
Maximilian Bode
73e75a7d16 pythonPackages.confluent-kafka: fix build (#46380) 
cc #45960
 2018-09-08 21:32:04 +02:00
Samuel Dionne-Riel
cb380983ed qt5.qtwebkit: Fixes modules src being subtly broken. 
b785d4813e introduced breakage in Qt
modules for 5.6 and 5.9, especially visible is Qt Webkit.

This was manifested by having a non-sensical build log where it is using
the top-level `src` attribute as source instead of Qt Webkit's own
source.

Were it not for the `src` top-level attribute (which is a legit
package), the error would have been made obvious by passing `null` to
`src`.

This partily reverts newly introduced way `src` can be passed to a
qtModule, instead relying on extending the `srcs` attrset.

For ZHF #45960
 2018-09-08 14:20:23 -04:00
Uli Baum
4c2388dee3 clasp-common-lisp: mark as broken 
no successful hydra build since 2018-01-03
 2018-09-08 20:08:49 +02:00
Janne Heß
9ef77854f7 treewide: Use http/https for homepages 2018-09-08 18:30:00 +02:00
Maximilian Bosch
6960a96a0c jbake: fix sandbox build (#46363) 
See https://hydra.nixos.org/build/80999410

Without a sandbox the `checkPhase` breaks with the following error:

```
/nix/store/i6vl5lwlz5jbkg4r6p340dwmj6fha3xq-stdenv-linux/setup: bin/jbake: /usr/bin/env: bad interpreter: No such file or directory
jbake did not return correct version
```

Running `patchShebangs` before fixes the issue.

Addresses #45960
 2018-09-08 15:20:39 +02:00
Maximilian Bosch
a02002deba pythonPackages.pycaption: fix build (#46356) 
The `beaitufulsoup4` package distributed by `nixpkgs` is now at `4.6.3`.

Additionally it fixes `gnomecaption` which depends on the broken
`pycaption` package.

See https://hydra.nixos.org/build/81000247
See https://hydra.nixos.org/build/80723223

Addresses #45960
 2018-09-08 11:20:47 +02:00
Uli Baum
dc84de59d1 nant: remove 
- our version is from 2015
- it doesn't build
- upstream project is dead, last release 2012, last commit Oct 2016.
- used by only 1 nixpkgs package: `boo`, marked broken since 2016.
 2018-09-08 10:23:23 +02:00
Uli Baum
5a166ffd47 boo: remove, broken since Jun 2016 
marked broken in June 2016, no visible attempt to fix it,
so let's get rid of it
 2018-09-08 10:23:23 +02:00
worldofpeace
2031c0ebfe mono-addins: fix build (#46354) 2018-09-08 10:06:58 +02:00
Jan Tojnar
667e54bdb0
Merge pull request #45045 from jtojnar/rygel 
Rygel
 2018-09-08 06:22:37 +01:00
Jan Tojnar
b18461b085
gupnp-igd: 0.2.4 → 0.2.5 2018-09-08 05:45:25 +02:00
Jan Tojnar
05506a2785
gupnp-av: enable docs, gir, tests and split outputs 2018-09-08 05:45:25 +02:00
Jan Tojnar
0f063f97a6
gupnp: 1.0.2 → 1.0.3 2018-09-08 05:45:24 +02:00
Jan Tojnar
5bee539f1c
gupnp-dlna: enable docs, tests and split outputs 2018-09-08 05:45:24 +02:00
Jan Tojnar
1aaea3839b
gupnp: enable docs, gir and split outputs 2018-09-08 05:45:23 +02:00
Jan Tojnar
f0f8229ee3
gssdp: enable docs, tests, gir and split outputs 2018-09-08 03:09:35 +02:00
Will Dietz
4fcf281e53 kconfig-frontends: don't disable format hardening, doesn't seem needed 2018-09-07 19:36:51 -05:00
Matthew Bauer
1acfddb69a
Merge pull request #45757 from bkchr/androidndk_standalone_toolchain 
Androidndk standalone toolchain support
 2018-09-07 19:34:49 -05:00
Will Dietz
3c42848ec7 kconfig-frontends: patch+wrap python shebang to fix kconfig-diff 2018-09-07 19:31:33 -05:00
Will Dietz
320a587b7e kconfig-frontends: 3.12.0.0 -> 4.11.0.1 2018-09-07 19:00:54 -05:00
Maximilian Bosch
218ac50fd4 pythonPackages.trio: fix build (#46342) 
Fixes the build for `python3Packages.trio' for the next ZHF iteration.
Please refer to the Hydra build for further reference: https://hydra.nixos.org/build/80617356

`python3Packages.sniffio` is needed for the build, otherwise the build
aborts with an error like this:

```
  Could not find a version that satisfies the requirement sniffio (from trio==0.6.0) (from versions: )
No matching distribution found for sniffio (from trio==0.6.0)
```

See #45960
 2018-09-08 01:02:55 +02:00
lewo
199b899846
Merge pull request #46255 from r-ryantm/auto-update/libmediainfo 
libmediainfo: 18.05 -> 18.08
 2018-09-07 23:02:32 +02:00
Alexey Shmalko
e5e4fd8ede
Merge pull request #46327 from costrouc/costrouc/markerlib 
pythonPackages.markerlib: init at 0.6.0
 2018-09-07 23:38:16 +03:00
Bastian Köcher
dd0b3dafc9 androidndk: Add makeStandaloneToolchain support 
Example:
```
let
  toolchain = (androidenv.androidndk.makeStandaloneToolchain 24 "arm64");
in
...
```
 2018-09-07 22:03:26 +02:00
Bastian Köcher
48bdf31f58 androidndk: Fix make_standalone_toolchain.py 
Python path needs to be absolute and the generated scripts will use also
an absolute path to `bash`.
 2018-09-07 21:42:49 +02:00
R. RyanTM
0bb9b3c233 pmd: 6.5.0 -> 6.7.0 (#46213) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
pmd
 2018-09-07 20:14:07 +02:00
Chris Ostrouchov
2895560f4f
pythonPackages.markerlib: init at 0.6.0 2018-09-07 14:08:35 -04:00
xeji
a60e79425b
Merge pull request #46019 from veprbl/pr/geant4_overhaul 
geant4 overhaul
 2018-09-07 20:08:17 +02:00
Yuriy Taraday
55d8a539ad gn: 20180423 -> 20180830 
gn sources have been moved into separate repository which greatly
simplify build process.
 2018-09-07 22:04:22 +04:00
Michael Raskin
114959bcb6
Merge pull request #46319 from 7c6f434c/sbcl-1.4.10 
sbcl: 1.4.7 -> 1.4.10
 2018-09-07 16:47:23 +00:00
xeji
0287b49d70
Merge pull request #46315 from romildo/upd.deepin-mutter 
deepin-mutter: init at 3.20.34
 2018-09-07 17:52:04 +02:00
R. RyanTM
79ba556020 bear: 2.3.12 -> 2.3.13 (#46308) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bear/versions
 2018-09-07 17:48:26 +02:00
Dmitry Kalinkin
8d063d92a4 geant4: limit platforms to linux 2018-09-07 11:36:28 -04:00
xeji
6f3ff5acc7
Merge pull request #46186 from costrouc/costrouc/python-ncclient 
pythonPackages.ncclient: refactor + init pythonPackages.selectors2
 2018-09-07 17:33:58 +02:00
Michael Raskin
d7861ab8b6 sbcl: 1.4.7 -> 1.4.10 2018-09-07 17:32:42 +03:00
Chris Ostrouchov
a726956b42
pythonPackages.ncclient: refactor 
adding selectors2 as dependency of ncclient. Added recently 20 days
ago in August. 8ef20f2828
 2018-09-07 10:22:22 -04:00
Chris Ostrouchov
11c3fe2258
pythonPackages.selectors2: init at 2.0.1 
Added package becuase now dependency of ncclient.
 2018-09-07 10:22:22 -04:00
Andrey Golovizin
2bec98ae06 pythonPackages.psycopg2: 2.7.1 -> 2.7.5 2018-09-07 15:40:34 +02:00
José Romildo Malaquias
d113ca46a7 clutter: enable evdev input (needed by some Deepin packages) 2018-09-07 10:06:41 -03:00
José Romildo Malaquias
9691049220 cogl: Add GL_ARB_shader_texture_lod and copy_sub_image support 2018-09-07 10:05:17 -03:00
Daniël de Kok
d261df5fc1 python2Packages.spacy_models: update all models to version 2.0.0 (#46182) 
Update the model list to those models that are compatibly with the
latest spaCy version:

https://github.com/explosion/spacy-models/blob/master/compatibility.json

The updated model file evaluates to the following packages:

python2Packages.spacy_models.de_core_news_sm
python2Packages.spacy_models.en_core_web_lg
python2Packages.spacy_models.en_core_web_md
python2Packages.spacy_models.en_core_web_sm
python2Packages.spacy_models.en_vectors_web_lg
python2Packages.spacy_models.es_core_news_md
python2Packages.spacy_models.es_core_news_sm
python2Packages.spacy_models.fr_core_news_md
python2Packages.spacy_models.fr_core_news_sm
python2Packages.spacy_models.it_core_news_sm
python2Packages.spacy_models.nl_core_news_sm
python2Packages.spacy_models.pt_core_news_sm
python2Packages.spacy_models.xx_ent_wiki_sm
python3Packages.spacy_models.de_core_news_sm
python3Packages.spacy_models.en_core_web_lg
python3Packages.spacy_models.en_core_web_md
python3Packages.spacy_models.en_core_web_sm
python3Packages.spacy_models.en_vectors_web_lg
python3Packages.spacy_models.es_core_news_md
python3Packages.spacy_models.es_core_news_sm
python3Packages.spacy_models.fr_core_news_md
python3Packages.spacy_models.fr_core_news_sm
python3Packages.spacy_models.it_core_news_sm
python3Packages.spacy_models.nl_core_news_sm
python3Packages.spacy_models.pt_core_news_sm
python3Packages.spacy_models.xx_ent_wiki_sm
 2018-09-07 12:58:53 +02:00
Christopher Ostrouchov
66e1288962 pythonPackages.kubernetes: add missing dependency (#46179) 
fix build issue from missing dependency `adal`. This is due to `adal`
being added as a dependency in July
23rd. 9afec55f4a (diff-b4ef698db8ca845e5845c4618278f29a)
 2018-09-07 11:25:53 +02:00
Michael Raskin
54b6652868 julia: add garrison as maintainer 
suggested in
https://github.com/NixOS/nixpkgs/pull/44191#discussion_r215802530

participates in upstream development
 2018-09-07 11:39:52 +03:00
Christopher Ostrouchov
427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June c0b9308988.
 2018-09-07 09:26:07 +02:00
Mateusz Kowalczyk
b8c4f02131
Merge pull request #46228 from r-ryantm/auto-update/onig 
oniguruma: 6.8.2 -> 6.9.0
 2018-09-07 16:16:51 +09:00
Christopher Ostrouchov
6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov
b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov
b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
R. RyanTM
105ef781ae libmediainfo: 18.05 -> 18.08 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
libmediainfo
 2018-09-06 18:18:47 -07:00
R. RyanTM
6d803b41c5 oniguruma: 6.8.2 -> 6.9.0 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
onig
 2018-09-06 15:57:40 -07:00
qoli
c909dc2da4 Disable temperamental shutdown_close_pipe test on Aarch32. 2018-09-06 15:27:57 -07:00
Shea Levy
56a605c8b9
nix-plugins: 4.0.5 -> 5.0.0. 
Fixes build against nix 2.1.
 2018-09-06 15:14:29 -04:00
Christopher Ostrouchov
7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
xplat
3fc7c5b591 opam: 1.2.2 -> 2.0.0 (#45806) 2018-09-06 19:18:34 +02:00
Chris Ostrouchov
1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Matthieu Coudron
13050ccc0b python3Packages.genanki: init at 0.6.0 
Library to generate anki flashcards.
 2018-09-06 18:31:57 +02:00
Francois-Rene Rideau
6c64d94490 gerbil-unstable: 2018-08-11 -> 2018-09-06 2018-09-06 11:43:49 -04:00
Francois-Rene Rideau
7306e54c2c gambit-unstable: 2018-08-06 -> 2018-09-03 2018-09-06 11:43:48 -04:00
Francois-Rene Rideau
ccbb218866 gerbil: 0.12-RELEASE -> 0.13 2018-09-06 11:43:48 -04:00
Francois-Rene Rideau
c1219b6892 gambit: 4.8.9 -> 4.9.0 2018-09-06 11:43:48 -04:00
Peter Hoeg
a278414b32 wp-cli: 2.0.0 -> 2.0.1 2018-09-06 21:36:06 +08:00
Peter Hoeg
037813906d wp-cli: use 1 store path instead of 4 2018-09-06 21:36:06 +08:00
Shea Levy
18337f3ece
Merge branch 'no-toPath' 2018-09-06 08:09:53 -04:00
Jörg Thalheim
89571b255e
Merge pull request #45996 from teto/alot_completion 
[rdy] pythonPackages.alot: install zsh completion
 2018-09-06 11:28:09 +01:00
Profpatsch
4616ef1f41 skaware: switch from git repos to tarballs 
It should be more performant this way.
 2018-09-06 11:53:22 +02:00
Profpatsch
e8f336fac2 skawarePackages.nsss: init at 0.0.1.0 2018-09-06 11:53:22 +02:00
Profpatsch
0071ae1d4f skawarePackages: factor out the common parts 
Introduce a `skawarePackages.buildPackage` function that contains the
common setup, removing a lot of duplication.
In particular, we require that the build directory has to be empty
after the `fixupPhase`, to make sure every relevant file is moved to
the outputs.

A next step would be to deduplicate the `configureFlags` attributes
and only require a `skawareInputs` field.
 2018-09-06 11:53:22 +02:00
Profpatsch
ec7d4a8089 skaware: update tools & libraries to summer 2018 release 
https://www.mail-archive.com/skaware@list.skarnet.org/msg01217.html

No support for yet.
 2018-09-06 11:53:22 +02:00
Jörg Thalheim
9a585658e2
Merge pull request #46132 from costrouc/costrouc/pymatgen-networkx-dependency 
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1
 2018-09-06 09:55:18 +01:00
Sarah Brofeldt
a59f244b2c
Merge pull request #46126 from flokli/gmpy-phe 
pythonPackages: cleanup gmpy[2], add phe
 2018-09-06 10:31:56 +02:00
Sarah Brofeldt
574f893507
Merge pull request #46124 from erosennin/pymetar-1.0 
pythonPackages.pymetar: 0.21 -> 1.0
 2018-09-06 10:26:32 +02:00
Bas van Dijk
7158e7442f
Merge pull request #46103 from teto/haskell_mnist 
haskellPackages.tensorflow-mnist-input-data: fetch
 2018-09-06 09:28:50 +02:00
Jörg Thalheim
df2cc4121b
Merge pull request #46125 from ashgillman/nipype-futures-py2-only 
python.pkgs.nipype: Futures is python 2 only. Also fix building.
 2018-09-06 08:25:33 +01:00
Jörg Thalheim
6e6ef8871b
Merge pull request #46135 from vbgl/ocaml-re-1.8.0 
ocamlPackages.re: 1.7.3 -> 1.8.0
 2018-09-06 08:24:17 +01:00
Bas van Dijk
1fc5a6d2b6 haskell: build the tensorflow packages on hydra since they now build successfully 2018-09-06 09:15:56 +02:00
Bas van Dijk
6e14b9fc2d Revert "libtensorflow: 1.9.0 -> 1.10.0" 
This reverts commit 713991132e.

libtensorflow is only used by the Haskell tensorflow packages and they
don't work with tensorflow-1.10 yet. So the easiest solution is to
just revert this commit and add it back when they do gain support.
 2018-09-06 09:15:56 +02:00
Bas van Dijk
39d35e77ee Revert "libtensorflow: fix hashes for darwin and cuda downloads" 
This reverts commit 93ed13f86b.

libtensorflow is only used by the Haskell tensorflow packages and they
don't work with tensorflow-1.10 yet. So the easiest solution is to
just revert this commit and add it back when they do gain support.
 2018-09-06 09:15:56 +02:00
Bas van Dijk
a5f08c17e5 haskellPackages.tensorflow-mnist: fix missing dependency on tensorflow-mnist-input-data 2018-09-06 09:15:56 +02:00
Bas van Dijk
641025d410 haskellPackages.tensorflow-mnist-input-data: link data files instead of copying 
This prevents duplication in the nix store.
 2018-09-06 09:15:56 +02:00
Bas van Dijk
6bd8799448 haskellPackages.tensorflow-mnist-input-data: use an attribute set to specify the data files 
This is more understandable and safer than using a nested list.
 2018-09-06 09:15:50 +02:00
Vladimír Čunát
b5bd566172
Merge #46075: texinfoInteractive: fix for new perl 2018-09-06 09:09:44 +02:00
Chris Ostrouchov
63cf879d6c
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Christopher Ostrouchov
ed130935c8
Merge branch 'master' into costrouc/dask-distributed 2018-09-05 23:53:23 -04:00
Chris Ostrouchov
4f70170f8a
pythonPackages.distributed: 1.15.1 -> 1.22.1 
The github repository was downloaded instead of the pypi repository
for testing (needed `conftest.py`). Major work was done on the
underlying dependencies to make distributed work on python 2.7,
3+. Note that the test **do** take a significant amount of time (10-15
minutes).

 - moved to `python-modules`
 - compatible with 2.7, 3+
 - all tests pass (previously tests were not run)
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
7b920172db
pythonPackages.pytest-repeat: init at 0.6.0 
- compatible with 2.7, 3+
 - all tests pass and running
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
05890dda3d
pythonPackages.joblib: 0.12.1 -> 0.12.2 
In order to get all the tests passing the Github repository was
downloaded instead of from pypi so that the `conftest.py` is
available.

In addition to updating the version:

  - compatible with 2.7, 3+ now
  - all tests are running and passing
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
3a56e314b8
pythonPackages.python-lz4: init at 2.1.0 
Fetching from github repository instead of pypi so that all tests can
be run.

 - compatible with 2.7, 3+
 - all tests pass
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
5704642a3f
pythonPackages.pytest-faulthandler: init at 1.5.0 
- compatible with 2.7 and 3+
 - all test pass.
 2018-09-05 23:46:28 -04:00
Jörg Thalheim
9a1159029c
Merge pull request #46122 from xeji/p/gnu-smalltalk 
gnu-smalltalk: fix build
 2018-09-05 23:46:00 +01:00
Florian Klink
e053386c92 gmpy2: 2.0.6 -> 2.0.8 
Also move outside python-packages.nix
 2018-09-05 23:56:20 +02:00
Florian Klink
7339a4004c gmpy: move outside python-packages.nix 2018-09-05 23:56:20 +02:00
Florian Klink
f051f66c9a phe: init at 1.4.0 2018-09-05 23:56:20 +02:00
Robert Schütz
041043420f python.pkgs.py3status: fix build 2018-09-05 23:28:31 +02:00
Ashley Gillman
12c0dd5432 python.pkgs.nipype: Futures is python 2 only. Also fix building. 2018-09-05 22:26:34 +01:00
Andrey Golovizin
7de5708e9e pythonPackages.pymetar: enable tests 2018-09-05 23:08:47 +02:00
Uli Baum
e5d9c16f2a gnu-smalltalk: fix build 
disable format hardening
 2018-09-05 23:01:15 +02:00
Andrey Golovizin
ee841c57bf pythonPackages.pymetar: 0.21 -> 1.0 2018-09-05 22:32:57 +02:00
Andrey Golovizin
085cc29323 pythonPackages.pymetar: fix license 2018-09-05 22:32:49 +02:00
Matthew Bauer
4120a9dda7
Merge pull request #42295 from avnik/libprefixed-to-multioutput/heimdal 
Libprefixed to multioutput/heimdal
 2018-09-05 13:50:13 -05:00
Wael Nasreddine
7e74013190 gocode: c7fddb39ecbc9ebd1ebe7d2a3af473ed0fffffa1 -> 00e7f5ac290aeb20a3d8d31e737ae560a191a1d5 (#46107) 
Also, switch to the now-maintained fork of gocode available at github.com/mdempsky/gocode
 2018-09-05 20:31:58 +02:00
Vincent Laporte
48708a9c43
ocamlPackages.re: 1.7.3 -> 1.8.0 2018-09-05 17:14:58 +00:00
Vincent Laporte
f0a0ccabcc
ocamlPackages.seq: init at 0.1 2018-09-05 17:12:13 +00:00
Jan Malakhovski
2ad99bcc82 texinfo: fix perl issues by applying patches from upstream 2018-09-05 16:39:36 +00:00
Jethro Kuan
a9a380b259 pythonPackages.tflearn: 0.2.1 -> 0.3.2 (#46102) 2018-09-05 17:38:23 +01:00
Matthieu Coudron
11e2009821 haskellPackages.tensorflow-mnist-input-data: fetch 
Prefetch data so that the package doesn't try to connect to the internet.
 2018-09-06 00:11:02 +09:00
xeji
ba52f4cb76
statsd: mark broken, disable nixos test (#46097) 
It's broken with node v8 and the upstream project is dead
(last commit Nov. 2016), see #45946 and
https://github.com/etsy/statsd/issues/646
 2018-09-05 16:48:14 +02:00
Daniël de Kok
348a153781 pythonPackages.thinc: fix darwin build (#46092) 
thinc uses Accelerate on macOS as a blas library. Add the necessary
dependencies to allow building on unsandboxed Darwin machines.
 2018-09-05 16:22:52 +02:00
Jörg Thalheim
f9e7de9294
Merge pull request #46089 from vbgl/ocaml-4.07-enableP4 
ocamlPackages.{tyxml,lwt}: always enable camlp4 support
 2018-09-05 10:36:24 +01:00
Jörg Thalheim
e9e28b1a02
Merge pull request #46090 from danieldk/spacy 
spacy: Fix build
 2018-09-05 10:34:51 +01:00
Daniël de Kok
da8475736e spacy: relax dependency versions 2018-09-05 10:39:03 +02:00
Vincent Laporte
e3cae4a2e5 gnumeric: 1.12.39 -> 1.12.43 (#46088) 
goffice: 0.10.39 -> 0.10.43
 2018-09-05 10:36:03 +02:00
Daniël de Kok
ffb094f939 thinc: relax dependency version requirements 2018-09-05 10:29:01 +02:00
Samuel Dionne-Riel
c59d9d371e qtkeychain: Fixes Qt4 build. (#46085) 2018-09-05 09:28:50 +02:00
xeji
91cc864c3c
Merge pull request #46081 from samueldr/fix/solarus 
solarus[-quest-editor]: 1.4.5 -> 1.5.3
 2018-09-05 08:53:51 +02:00
Vincent Laporte
c722db75ba
ocamlPackages.{tyxml,lwt}: always enable camlp4 support 2018-09-05 06:06:48 +00:00
Samuel Dionne-Riel
455f8151fd solarus-quest-editor: 1.4.5 -> 1.5.3 2018-09-04 22:04:33 -04:00
Urban Skudnik
d23c357f1c
hcloud: Add autocomplete support for bash and zsh 
Currently one would need to manually run the command to generate
completion and insert it into `.bashrc`/`.zshrc` to get the
autocompletion to work. This patch will automatically generate
both docs and save them to correct position so it should continue
to work even if user changes the shell at a later stage.
 2018-09-05 02:35:03 +02:00
Will Dietz
e9d4bab044
Merge pull request #46070 from Mic92/radare2 
radare2: 2.8.0 -> 2.9.0,  radare2-cutter: 1.7 -> 1.7.1
 2018-09-04 19:19:57 -05:00
Sarah Brofeldt
e153a988ec
Merge pull request #46031 from srhb/fix-go-on-aarch64 
go_1_11: Allow only one of GOARM={5,6,7}
 2018-09-05 01:05:22 +02:00
Andreas Rammhold
d814c98ec8 python.pkgs.pytest-fixture-config: disable tests (#46021) 
Tests seem to fail on all recent versions even outside of our build
system. The upstream CI tests seem to somehow succeed but I wasn't able
to reproduce that locally. For not it is probably best to disable them.
 2018-09-05 01:02:06 +02:00
Jörg Thalheim
a56fd17938 radare2-cutter: 1.7 -> 1.7.1 2018-09-04 23:15:07 +01:00
Jörg Thalheim
63b7bc847c radare2-cutter: add mic92 as maintainer 2018-09-04 23:14:55 +01:00
Jörg Thalheim
24ce88615e radare2: 2.8.0 -> 2.9.0 2018-09-04 22:57:17 +01:00
Will Dietz
a36b861f80 liblangtag: bump to CLDR 33.1 unicode data (#46050) 
http://cldr.unicode.org/index/downloads/cldr-33-1
 2018-09-04 23:47:21 +02:00
worldofpeace
33fa23f6b3 dbus-sharp-2_0: fix build (#46060) 2018-09-04 23:38:07 +02:00
Leon Schuermann
4295e225f5 libvmi: fix libxenctrl dynamic loading (#45865) 
libvmi uses dlopen() to only require libxenctrl if the Xen hypervisor is used,
which failed because libxenctrl could not be found.
Add xen libraries to libvmi's RUNPATH using patchelf.
 2018-09-04 13:30:07 +02:00
Sarah Brofeldt
17b6efaf3d go_1_11: Only allow one of GOARM=5, 6 or 7 2018-09-04 11:46:35 +02:00
Orivej Desh
2e0befd22e libsignal-protocol-c: init at 2.3.2 2018-09-04 08:35:52 +00:00
xeji
d22e22e2dd
Merge pull request #45987 from danieldk/fix-vowpalwabbit 
vowpalwabbit: fix build against boost-python.
 2018-09-04 08:54:00 +02:00
Daniël de Kok
69d418aeac vowpalwabbit: mark broken on aarch64. 2018-09-04 07:43:53 +02:00
Uli Baum
e7a82cac35 swift: broken on aarch64 
never built according to available hydra logs
 2018-09-04 01:13:55 +02:00
Will Dietz
e4f4debcb9 swift: 4.1 -> 4.1.3 (#45777) 2018-09-04 01:08:39 +02:00
Timo Kaufmann
4e6cb86bdc
Merge pull request #46015 from leenaars/authres 
pythonPackages.authres: fix broken homepage
 2018-09-03 23:59:50 +02:00
Michiel Leenaars
9692b7997c pythonPackages.authres: fix broken homepage 2018-09-03 23:52:27 +02:00
xeji
96375d20bc
Merge pull request #45982 from rnhmjoj/vapour 
Vapoursynth updates
 2018-09-03 23:52:22 +02:00
xeji
c23ec2794d
Merge pull request #46011 from markuskowa/homepages-2 
Cleanup homepage links
 2018-09-03 23:32:52 +02:00
symphorien
3549879b45 gede: 2.6.1 -> 2.10.9 (#45995) 
reverting to qt 5.9 fixed the build.
 2018-09-03 23:24:38 +02:00
Markus Kowalewski
7422953eb0
lsof: add license + update homepage 
lib/licenses: add purdue style BSD license
 2018-09-03 22:36:27 +02:00
xeji
28def75a10
Merge pull request #45967 from worldofpeace/various-build-fixes/18.09 
Various build fixes
 2018-09-03 22:28:06 +02:00
baracoder
328cf82838 dotnet-sdk: 2.1.302 -> 2.1.401 (#45979) 2018-09-03 22:14:07 +02:00
Jörg Thalheim
fc865cc214
Merge pull request #46005 from volth/patch-243 
libguestfs-appliance: do not build on Hydra
 2018-09-03 21:02:40 +01:00
Daniël de Kok
e33be2ab56 Keras: fix build by updating expected dependencies. (#45992) 
Keras expects keras_preprocessing 1.0.2 and 1.0.4. 1.0.3 and 1.0.5
are respectively in nixpkgs.

ZHF #45960
 2018-09-03 21:59:36 +02:00
Daniël de Kok
fe7e89ba3b vowpal-wabbit: fix Darwin build. 
- Follow the same logic for finding boost-python as for Linux.
- Set DYLD_LIBRARY_PATH so that ctypes find_library can find
  boost-python.
- Do not use '-mt' suffix when linking against boost-serialization
  and boost-program_options on Darwin.
 2018-09-03 21:48:13 +02:00
Urban Skudnik
882f6c96d2 backblaze-b2: Fix autocompletion support 
backblaze v1.3.6 incorporates[1] a fix[2] for autocompletion that replaced
`have` function with `_have`. The postInstall hook therefore needs
to be updated to replace `_have`.

[1] https://github.com/Backblaze/B2_Command_Line_Tool#136-august-21-2018
[2] https://github.com/Backblaze/B2_Command_Line_Tool/pull/497
 2018-09-03 20:45:32 +01:00
volth
ac52817bd9
libguestfs-appliance: do not build on Hydra 2018-09-03 19:08:20 +00:00
Dmitry Kalinkin
f46d23996c Revert "arrow-cpp: 0.9.0 -> 0.10.0" (#45990) 
Hold off the upgrade until parquet 1.5.0 is released.

This reverts commit 72d630779d.
 2018-09-03 20:51:28 +02:00
Henry
af54308081 scuttlebot and git-ssb: init at 11.4.3 and 2.3.6 2018-09-03 20:35:37 +02:00
Matthieu Coudron
97816bed33 pythonPackages.alot: install zsh completion 2018-09-04 02:22:58 +09:00
Dmitry Kalinkin
fc4f99a8dd g4py: fix for new boost 2018-09-03 10:55:33 -04:00
Dmitry Kalinkin
f3049d020a geant4: move parameter definitions from all-packages, use system zlib, use qt5 2018-09-03 10:55:33 -04:00
Dmitry Kalinkin
4d33e289b5 g4py: fix after bump to 10.04.1 2018-09-03 10:55:33 -04:00
Dmitry Kalinkin
537de20645 geant4: remove multi version infrastructure 
Nobody maintains this and this does not contribute anything towards
making reproducible research. Also this was missing recurseIntoAttrs, so
Hydra used to not see it.
 2018-09-03 10:55:33 -04:00
Dmitry Kalinkin
d7ab0f4026 geant4: only supply requested dependencies, sort out *BuildInputs 2018-09-03 10:55:15 -04:00
Dmitry Kalinkin
d22be10e66 geant4: refactor cmakeFlags to use lists 2018-09-03 10:55:15 -04:00
Vladimír Čunát
3db3ae3700
fixup! treewide: fix various links (homepage, src) 2018-09-03 16:54:14 +02:00
Vladimír Čunát
9b48a67731
treewide: fix various links (homepage, src) 2018-09-03 16:53:02 +02:00
Daniël de Kok
875bb6bcb9 vowpalwabbit: fix build against boost-python. 
Patch setup.py to look for libboost_python{Major}{Minor}.
 2018-09-03 15:47:04 +02:00
rnhmjoj
5a27c2bdcd
vapoursynth: R43 -> R44 2018-09-03 15:09:28 +02:00
rnhmjoj
56a35b39f7
vapoursynth-mvtools: 19 -> 20 2018-09-03 15:09:20 +02:00
Bas van Dijk
252c0d4c82 opencv: 3.4.2 -> 3.4.3 2018-09-03 12:38:50 +02:00
Austin Seipp
185f0015f2 opendht: rework module to use autoreconfHook, and use multiple outputs 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2018-09-03 03:23:32 -05:00
Jörg Thalheim
d1c6c32230
Merge pull request #45964 from Mic92/irc 
python.pkgs.irc: 14.2.2 -> 16.4
 2018-09-03 01:36:07 +01:00
Jörg Thalheim
35c9408ca4 python.pkgs.irc: 14.2.2 -> 16.4 2018-09-03 01:25:03 +01:00
Jörg Thalheim
9bc1b13983 python.pkgs.jaraco_logging: 1.5 -> 1.5.2 2018-09-03 01:25:03 +01:00
Jörg Thalheim
7cd2bf48f7 python.pkgs.jaraco_text: 1.7 -> 1.10.1 2018-09-03 01:25:02 +01:00
Jörg Thalheim
c4bf056c08 python.pkgs.jaraco.collections: 1.3.2 -> 1.5.3 2018-09-03 01:25:02 +01:00
Jörg Thalheim
6b1b6c84bf python.pkgs.jaraco.itertools: 1.7.1 -> 2.4 2018-09-03 01:25:02 +01:00
Jörg Thalheim
b3e9520a0c python.pkgs.jaraco.classes: 1.4 -> 1.5 2018-09-03 01:25:01 +01:00
Jörg Thalheim
97b73d6a58 python.pkgs.jaraco.stream: 1.1.1 -> 1.2 2018-09-03 01:25:01 +01:00
Jörg Thalheim
8e15622cf3 python.pkgs.inflect: 0.2.5 -> 1.0.0 2018-09-03 01:25:01 +01:00
worldofpeace
f828bb313b valadoc: fix build 2018-09-02 18:50:40 -04:00
Mario Rodas
a3872f66b7 racket-minimal: fix hash (#45952) 2018-09-02 21:51:49 +02:00
Markus Kowalewski
c6878ad519
dfu-util: update homepage 2018-09-02 21:00:38 +02:00
Markus Kowalewski
d9649ea38b
splint: update homepage 2018-09-02 20:55:47 +02:00
Markus Kowalewski
93a09d4706
vrpn: update homepage 2018-09-02 20:54:39 +02:00
Markus Kowalewski
4a901e44db
tcllib: update homepage 2018-09-02 20:53:01 +02:00
Markus Kowalewski
58d03b427f
soqt,soxt: update homepage 2018-09-02 20:51:18 +02:00
Markus Kowalewski
b6c721f6e9
pokersource: update homepage 2018-09-02 20:44:46 +02:00
Markus Kowalewski
e7f853acf3
openslp: update homepage 2018-09-02 20:33:12 +02:00
Markus Kowalewski
c7f081a921
libwebsockets: update homepage 2018-09-02 20:28:24 +02:00
Markus Kowalewski
b9c53e32ca
libtar: update homepage 2018-09-02 20:27:28 +02:00
Markus Kowalewski
564f722495
libmowgli: add license + update homepage 2018-09-02 20:20:55 +02:00
Markus Kowalewski
964b122431
liblas: update homepage 2018-09-02 20:18:15 +02:00
Markus Kowalewski
e8c6b0f763
iso-codes: update homepage + add license 2018-09-02 20:13:36 +02:00
Markus Kowalewski
96dc7a1c54
ilixi: update homepage 2018-09-02 20:11:20 +02:00
Ryan Mulligan
7b54a50e97
Merge pull request #45730 from Helkafen/snakemake 
snakemake: init at 5.2.2
 2018-09-02 07:54:13 -07:00
R. RyanTM
c2a984c450 itk: 4.13.0 -> 4.13.1 (#45827) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
itk
 2018-09-02 16:43:46 +02:00
Peter Simons
b35b8baddd
Merge pull request #45348 from shlevy/shellFor-all-build-inputs 
haskellPackages.shellFor: fix after recent getHaskellBuildInputs fix.
 2018-09-02 16:11:43 +02:00
Daniël de Kok
ffde2e71bc backblaze-b2: 1.1.0 -> 1.3.6 (#45929) 
Changelog: https://github.com/Backblaze/B2_Command_Line_Tool#release-history
 2018-09-02 08:45:09 +02:00
xeji
a3434cf4e5
Merge pull request #45921 from markuskowa/homepages 
Cleanup homepage links
 2018-09-02 08:39:30 +02:00
John Ericson
4a8a80d9b0
Merge pull request #45922 from obsidiansystems/androidndk-fix-eval 
androidndk: fix eval
 2018-09-01 23:05:58 -04:00
Graham Christensen
121a7d743a
Merge pull request #45195 from Ralith/vulkan 
vulkan: 1.1.77.0 -> 1.1.82.1
 2018-09-01 21:35:06 -04:00
Graham Christensen
b5035a808a
Merge pull request #45923 from colemickens/packet 
packet: v20161215 -> v2.2.2
 2018-09-01 20:40:30 -04:00
Tim Steinbach
2b71201708
travis: 1.8.8 -> 1.8.9 2018-09-01 20:29:30 -04:00
Cole Mickens
2c7ba962a8 packet: v20161215 -> v2.2.2 2018-09-01 17:22:27 -07:00
Markus Kowalewski
31725ed5f1
gtkimageview: update homepage 2018-09-02 01:46:29 +02:00
Markus Kowalewski
13c2b67018
clipper: update homepage 2018-09-02 01:46:29 +02:00
Markus Kowalewski
e8ba17ffa8
bwidget: update homepage 2018-09-02 01:46:28 +02:00
Markus Kowalewski
ede37f98e2
qnial: update homepage 2018-09-02 01:46:28 +02:00
Markus Kowalewski
d75cfa03ec
orc: update homepage 2018-09-02 01:46:28 +02:00
Luigy Leon
c759f7a9b7 androidndk: fix eval 
fixup from https://github.com/NixOS/nixpkgs/pull/45820

/cc @Ericson2314
 2018-09-01 19:40:52 -04:00
Markus Kowalewski
7bc523c492
jamomacore: update homepage 2018-09-02 00:09:28 +02:00
Markus Kowalewski
ce4cf418b9
laszip: update homepage 2018-09-02 00:00:40 +02:00
R. RyanTM
25176c8812 libircclient: 1.9 -> 1.10 (#45821) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
libircclient
 2018-09-01 23:32:47 +02:00
John Ericson
31e675068e
Merge pull request #45888 from obsidiansystems/qt3-configure-flags 
qt-3: Make `configureFlags` a list
 2018-09-01 15:37:30 -04:00
Tobias Happ
e6a3ad775f pythonPackages.dependency-injector: init at 3.13.1 (#45871) 2018-09-01 17:29:47 +02:00
Vladimír Čunát
342d3db703
Merge branch 'staging-next' 
The failure diff seems good-enough on Hydra now.
 2018-09-01 17:02:15 +02:00
Daniël de Kok
958bdc313c dbxml: move db62 to propagatedBuildInputs. (#45878) 
Some public DB XML headers include db.h from Berkeley DB. Move db62
to propagatedBuildInputs, to ensure that packages with a dependency
on dbxml, but without a dependency on db compile.
 2018-09-01 16:09:44 +02:00
Kevin Cox
1f073bc40b
Merge pull request #45903 from kevincox/cargo-web-init 
cargo-web: init at 0.6.15
 2018-09-01 14:44:17 +01:00
Mathias Schreck
bda054725b sauce-connect: 4.4.12 -> 4.5.1 (#45856) 2018-09-01 15:36:00 +02:00
Kevin Cox
0a6420cbac
cargo-web: init at 0.6.15 2018-09-01 14:20:58 +01:00
Vladimír Čunát
355f19653c
pythonPackages.more-itertools: avoid doCheck on i686 
I expect noone will want to spend time really fixing these,
but it blocks wine from building...
 2018-09-01 15:08:53 +02:00
Daiderd Jordan
9e2e667d05
Merge pull request #44640 from LnL7/beam-erlangR20 
beam-packages: default erlangR19 -> erlangR20
 2018-09-01 14:24:11 +02:00
Jörg Thalheim
fbad0bc8f9
Merge pull request #45892 from vbgl/reason 
ocamlPackages.reason: remove spurious dependency on opam
 2018-09-01 11:32:38 +01:00
Jörg Thalheim
b0155aa1e7
Merge pull request #45842 from Kaali/master 
cocoapods: 1.5.0 -> 1.5.3
 2018-09-01 11:25:26 +01:00
Jan Tojnar
bc60ee1122
Merge pull request #45872 from worldofpeace/geoclue/patch 
geoclue2: add patch to whitelist elementary's agent
 2018-09-01 11:23:01 +01:00
R. RyanTM
6e6ddb572b libivykis: 0.42.2 -> 0.42.3 (#45824) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
libivykis
 2018-09-01 12:21:20 +02:00
Jörg Thalheim
b29aff5a05
Merge pull request #45705 from manveru/ruby-2.5-default 
ruby: default to version 2.5
 2018-09-01 11:17:13 +01:00
R. RyanTM
a902ac91fe libconfuse: 3.2.1 -> 3.2.2 (#45825) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
libconfuse
 2018-09-01 12:17:06 +02:00