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5525 Commits

Author SHA1 Message Date
Chris Ostrouchov
05890dda3d
pythonPackages.joblib: 0.12.1 -> 0.12.2 
In order to get all the tests passing the Github repository was
downloaded instead of from pypi so that the `conftest.py` is
available.

In addition to updating the version:

  - compatible with 2.7, 3+ now
  - all tests are running and passing
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
3a56e314b8
pythonPackages.python-lz4: init at 2.1.0 
Fetching from github repository instead of pypi so that all tests can
be run.

 - compatible with 2.7, 3+
 - all tests pass
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
5704642a3f
pythonPackages.pytest-faulthandler: init at 1.5.0 
- compatible with 2.7 and 3+
 - all test pass.
 2018-09-05 23:46:28 -04:00
Florian Klink
e053386c92 gmpy2: 2.0.6 -> 2.0.8 
Also move outside python-packages.nix
 2018-09-05 23:56:20 +02:00
Florian Klink
7339a4004c gmpy: move outside python-packages.nix 2018-09-05 23:56:20 +02:00
Florian Klink
f051f66c9a phe: init at 1.4.0 2018-09-05 23:56:20 +02:00
Robert Schütz
041043420f python.pkgs.py3status: fix build 2018-09-05 23:28:31 +02:00
Ashley Gillman
12c0dd5432 python.pkgs.nipype: Futures is python 2 only. Also fix building. 2018-09-05 22:26:34 +01:00
Andrey Golovizin
7de5708e9e pythonPackages.pymetar: enable tests 2018-09-05 23:08:47 +02:00
Andrey Golovizin
ee841c57bf pythonPackages.pymetar: 0.21 -> 1.0 2018-09-05 22:32:57 +02:00
Andrey Golovizin
085cc29323 pythonPackages.pymetar: fix license 2018-09-05 22:32:49 +02:00
Jethro Kuan
a9a380b259 pythonPackages.tflearn: 0.2.1 -> 0.3.2 (#46102) 2018-09-05 17:38:23 +01:00
Daniël de Kok
348a153781 pythonPackages.thinc: fix darwin build (#46092) 
thinc uses Accelerate on macOS as a blas library. Add the necessary
dependencies to allow building on unsandboxed Darwin machines.
 2018-09-05 16:22:52 +02:00
Daniël de Kok
da8475736e spacy: relax dependency versions 2018-09-05 10:39:03 +02:00
Daniël de Kok
ffb094f939 thinc: relax dependency version requirements 2018-09-05 10:29:01 +02:00
Andreas Rammhold
d814c98ec8 python.pkgs.pytest-fixture-config: disable tests (#46021) 
Tests seem to fail on all recent versions even outside of our build
system. The upstream CI tests seem to somehow succeed but I wasn't able
to reproduce that locally. For not it is probably best to disable them.
 2018-09-05 01:02:06 +02:00
xeji
d22e22e2dd
Merge pull request #45987 from danieldk/fix-vowpalwabbit 
vowpalwabbit: fix build against boost-python.
 2018-09-04 08:54:00 +02:00
Daniël de Kok
69d418aeac vowpalwabbit: mark broken on aarch64. 2018-09-04 07:43:53 +02:00
Michiel Leenaars
9692b7997c pythonPackages.authres: fix broken homepage 2018-09-03 23:52:27 +02:00
Daniël de Kok
e33be2ab56 Keras: fix build by updating expected dependencies. (#45992) 
Keras expects keras_preprocessing 1.0.2 and 1.0.4. 1.0.3 and 1.0.5
are respectively in nixpkgs.

ZHF #45960
 2018-09-03 21:59:36 +02:00
Daniël de Kok
fe7e89ba3b vowpal-wabbit: fix Darwin build. 
- Follow the same logic for finding boost-python as for Linux.
- Set DYLD_LIBRARY_PATH so that ctypes find_library can find
  boost-python.
- Do not use '-mt' suffix when linking against boost-serialization
  and boost-program_options on Darwin.
 2018-09-03 21:48:13 +02:00
Matthieu Coudron
97816bed33 pythonPackages.alot: install zsh completion 2018-09-04 02:22:58 +09:00
Daniël de Kok
875bb6bcb9 vowpalwabbit: fix build against boost-python. 
Patch setup.py to look for libboost_python{Major}{Minor}.
 2018-09-03 15:47:04 +02:00
Jörg Thalheim
d1c6c32230
Merge pull request #45964 from Mic92/irc 
python.pkgs.irc: 14.2.2 -> 16.4
 2018-09-03 01:36:07 +01:00
Jörg Thalheim
35c9408ca4 python.pkgs.irc: 14.2.2 -> 16.4 2018-09-03 01:25:03 +01:00
Jörg Thalheim
9bc1b13983 python.pkgs.jaraco_logging: 1.5 -> 1.5.2 2018-09-03 01:25:03 +01:00
Jörg Thalheim
7cd2bf48f7 python.pkgs.jaraco_text: 1.7 -> 1.10.1 2018-09-03 01:25:02 +01:00
Jörg Thalheim
c4bf056c08 python.pkgs.jaraco.collections: 1.3.2 -> 1.5.3 2018-09-03 01:25:02 +01:00
Jörg Thalheim
6b1b6c84bf python.pkgs.jaraco.itertools: 1.7.1 -> 2.4 2018-09-03 01:25:02 +01:00
Jörg Thalheim
b3e9520a0c python.pkgs.jaraco.classes: 1.4 -> 1.5 2018-09-03 01:25:01 +01:00
Jörg Thalheim
97b73d6a58 python.pkgs.jaraco.stream: 1.1.1 -> 1.2 2018-09-03 01:25:01 +01:00
Jörg Thalheim
8e15622cf3 python.pkgs.inflect: 0.2.5 -> 1.0.0 2018-09-03 01:25:01 +01:00
Ryan Mulligan
7b54a50e97
Merge pull request #45730 from Helkafen/snakemake 
snakemake: init at 5.2.2
 2018-09-02 07:54:13 -07:00
Tobias Happ
e6a3ad775f pythonPackages.dependency-injector: init at 3.13.1 (#45871) 2018-09-01 17:29:47 +02:00
Vladimír Čunát
355f19653c
pythonPackages.more-itertools: avoid doCheck on i686 
I expect noone will want to spend time really fixing these,
but it blocks wine from building...
 2018-09-01 15:08:53 +02:00
Frederik Rietdijk
4134048b6f Merge master into staging-next 2018-09-01 10:41:58 +02:00
Frederik Rietdijk
43f6ceabb8 pythonPackages.pandas: fix build 2018-09-01 10:41:37 +02:00
Robert Schütz
5a9270fe57 python.pkgs.h5py: disable tests 2018-09-01 10:41:37 +02:00
Robert Schütz
de151625f2 python.pkgs.natsort: no pyflakes and pep8 checks 2018-09-01 10:41:37 +02:00
Robert Schütz
6c9f7e2742 python.pkgs.cairocffi: remove superfluous patch 2018-09-01 10:41:37 +02:00
Robert Schütz
5a7e9c8237 python.pkgs.celery: fix tests 2018-09-01 10:41:37 +02:00
Robert Schütz
30970aa039 python.pkgs.keyrings-alt: fix tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0840e427e6 pythonPackages.bottleneck: get rid of warnings during tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
39ca3eb666 pythonPackages.cmd2: fix build 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
1c66e6d76d pythonPackages.moto: fix build 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
32492d9189 Python: fix botocore/boto3/awscli mess 
Revert "pythonPackages.boto3: 1.7.84 -> 1.8.4"

This reverts commit 06b37899300e0800e7a0ea632fcb5bf0f291e003.

Revert "python: botocore: 1.11.1 -> 1.11.4"

This reverts commit 3b0242d4c014a440b8c1c58cae812dc84496cc95.

Revert "python: botocore: 1.10.75 -> 1.11.1"

This reverts commit 996fd79967.

Revert "awscli: 1.16.1 -> 1.16.4"

This reverts commit 4880df9078bf024fd5a98afa8c6f28833e13f3d3.

Revert "awscli: 1.15.66 -> 1.16.1"

This reverts commit 6923bc8d23.

awscli: fix build

pythonPackages.botocore: 1.10.75 -> 1.10.84
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
f823ca5752 pythonPackages.scipy: disable tests 
We should try to get these enabled again asap.
https://github.com/scipy/scipy/pull/8871#issuecomment-417391433
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
ee5bff207f Revert "python.pkgs.python-jose: 2.0.2 -> 3.0.0" 
This breaks moto.

This reverts commit a6d3577d3d.
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7f50451d3c Revert "python: shippai: 0.2.3 -> 0.3.1" 
This broke vdirsyncer.

This reverts commit 0bca28c890.
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
5918fc4601 pythonPackages.cement: disable Python 2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
57f1adc414 pythonPackages.boto3: 1.7.84 -> 1.8.4 2018-09-01 10:41:37 +02:00
Robert Schütz
a8d69de93f python.pkgs.sarge: disable tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
503f808870 pythonPackages.pytestrunner: failed attempt at enabling tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
37afcbf0f5 pythonPackages.folium: add missing numpy runtime dependency 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0666f784ee pythonPackages.boto3: 1.7.57 -> 1.7.84 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
a0d69a5642 python: XlsxWriter: 1.0.7 -> 1.0.9 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
997cb5c3cf python: typing: 3.6.4 -> 3.6.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7560a6f753 python: Sphinx: 1.7.7 -> 1.7.8 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
e8adeef855 python: sockjs-tornado: 1.0.3 -> 1.0.5 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
cdccb7b650 python: regex: 2018.08.17 -> 2018.08.29 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
36cd6f2bd5 python: pytest-timeout: 1.3.1 -> 1.3.2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
8a6b20cbad python: pytest: 3.7.2 -> 3.7.4 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
630fd86bc7 python: phonenumbers: 8.9.11 -> 8.9.12 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
e8ff5774aa python: persistent: 4.4.1 -> 4.4.2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
88800b80f0 python: openpyxl: 2.5.5 -> 2.5.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
92855be2de python: moto: 1.3.4 -> 1.3.5 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0075504e55 python: jupyterlab: 0.34.2 -> 0.34.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
68b99fc377 python: joblib: 0.12.2 -> 0.12.3 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
d126f735f1 python: Faker: 0.8.17 -> 0.8.18 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7677c18e19 python: dftfit: 0.4.11 -> 0.4.22 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
8d67b3f2ee python: deform: 2.0.5 -> 2.0.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
1708c82213 python: botocore: 1.11.1 -> 1.11.4 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
b92d2f6057 python: aws-adfs: 0.12.0 -> 0.12.1 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0abb01085d python: absl-py: 0.4.0 -> 0.4.1 2018-09-01 10:41:37 +02:00
Robert Schütz
dc707e41e4 python.pkgs.pyqrcode: init at 1.2.1 2018-08-31 19:07:35 +02:00
Robert Schütz
09cced6725 python.pkgs.pyotp: init at 2.2.6 2018-08-31 19:07:35 +02:00
Robert Schütz
93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
Robert Schütz
2b5659dc04 python.pkgs.ecpy: 0.9.0 -> 0.9.1 2018-08-31 15:56:52 +02:00
John Ericson
2c4a75e9ef
Merge pull request #45820 from obsidiansystems/dont-use-obsolete-platform-aliases 
treewide: Dont use obsolete platform aliases
 2018-08-31 09:56:10 -04:00
Silvan Mosberger
f7606a82ed
Merge pull request #43437 from MostAwesomeDude/cozy 
Cozy
 2018-08-31 15:29:41 +02:00
Sebastian Meric de Bellefon
c49e507bbc python.pkgs.ratelimiter: init at 1.2.0.post0 2018-08-31 08:57:28 -04:00
Sarah Brofeldt
7590d8b332
Merge pull request #45851 from mpickering/folium-0.6.0 
folium: 0.5.0 -> 0.6.0
 2018-08-31 11:31:56 +02:00
Matthew Pickering
9b375a34e5 folium: 0.5.0 -> 0.6.0 2018-08-31 08:40:13 +00:00
Sarah Brofeldt
582507627f pythonPackages.httpsig: init at 1.2.0 2018-08-30 20:46:54 -07:00
John Ericson
0828e2d8c3 treewide: Remove usage of remaining redundant platform compatability stuff 
Want to get this out of here for 18.09, so it can be deprecated
thereafter.
 2018-08-30 17:20:32 -04:00
Robert Schütz
a9780a095b Merge branch 'master' into staging-next 2018-08-30 21:56:13 +02:00
Frederik Rietdijk
ca6442bc33
Merge pull request #45732 from marsam/feature/update-pywatchman 
pythonPackages.pywatchman: 1.3.0 -> 1.4.1
 2018-08-30 17:54:53 +02:00
teh
8c3514609b pytorch: 0.4.0 -> 0.4.1 (#45773) 
Also disable tests that fail in sandbox.
 2018-08-30 17:30:29 +02:00
Robert Schütz
4b4c871401 buttersink: move out of pythonPackages (#45783) 2018-08-30 16:33:53 +02:00
Robert Schütz
74495e4f3a python.pkgs.plotly: fix build 2018-08-30 15:26:18 +02:00
Robert Schütz
523a7c879f python.pkgs.backports_lzma: fix tests 2018-08-30 14:54:48 +02:00
Robert Schütz
ab772d066d python.pkgs.docker_registry: remove 
It has been deprecated for 4 years.
 2018-08-30 14:54:48 +02:00
Frederik Rietdijk
6038628ea5 Merge master into staging-next 2018-08-29 20:54:55 +02:00
Mario Rodas
58db095c86 pythonPackages.pywatchman: move to python-modules 
pywatchman is licensed under BSD-3

    150f1fb4ef
 2018-08-29 10:06:02 -05:00
José Romildo Malaquias
4637166ead pythonefl: uses python.interpreter 2018-08-28 21:42:30 -03:00
José Romildo Malaquias
4f82d135f7 pythonefl: move out of python-packages.nix 
- Move out of pkgs/top-level/python-packages.nix into
pkgs/development/python-modules/python-efl/default.nix.

- Add dependency on dbus-python.

- Remove hardeningDisable.

- Update some meta attributes.
 2018-08-28 19:34:20 -03:00
Frederik Rietdijk
7945295410 Merge master into staging 2018-08-27 08:21:50 +02:00
Timo Kaufmann
0e4160a3a1 pythonPackages.sympy: 1.1.1 -> 1.2 2018-08-26 19:56:44 +02:00
Frederik Rietdijk
b61b993b75 Merge master into staging 2018-08-26 12:10:05 +02:00
Bas van Dijk
954eb34a53 elasticsearch-curator: explain why we disable the test-suite 2018-08-26 01:20:15 +02:00
Bas van Dijk
d5e7d48f5e requests-aws4auth: only disable tests on python >= 3 2018-08-26 01:12:16 +02:00
Frederik Rietdijk
c71942eb7e
Merge pull request #44752 from costrouc/costrouc/lammps-update 
material science packages (init and update): lammps, python - ase, pymatgen-lammps, lammps-cython, dftfit
 2018-08-25 19:03:36 +02:00
Bas van Dijk
8aa3318741 elasticsearch-curator: disable test-suite because it hangs 2018-08-25 18:53:10 +02:00
Bas van Dijk
61b646741c pythonPackages.requests-aws4auth: init at 0.9 
Needed by elasticsearch-curator.
 2018-08-25 18:53:10 +02:00
Bas van Dijk
16ce3c8f74 elasticsearch-curator: include missing boto3 dependency 
TODO: we're still missing the requests-aws4auth>=0.9 dependency
 2018-08-25 18:53:10 +02:00
Frederik Rietdijk
99696fb9a0 python: numexpr: 2.6.7 -> 2.6.8 2018-08-25 18:48:05 +02:00
Frederik Rietdijk
f68a5ec9b5 pythonPackages.bootstrapped-pip: setuptools: 40.0.0 -> 40.2.0 2018-08-25 18:07:19 +02:00
Frederik Rietdijk
c8d0c5fdec pythonPackages.pytest-asyncio: fix build 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
167c0d347b python: XlsxWriter: 1.0.5 -> 1.0.7 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
0ae1f52282 python: websocket_client: 0.48.0 -> 0.51.0 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
7f22dae41c python: vega: 1.3.0 -> 1.4.0 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
793c455b98 python: typeguard: 2.2.1 -> 2.2.2 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
de92954d5d python: trio: 0.5.0 -> 0.6.0 2018-08-25 18:07:18 +02:00
Frederik Rietdijk
e671f6bb61 python: tqdm: 4.24.0 -> 4.25.0 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
587f70cbfe python: svg.path: 2.2 -> 3.0 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
b99101d9cc python: stripe: 2.4.0 -> 2.6.0 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
e5e1408c78 python: SQLAlchemy: 1.2.10 -> 1.2.11 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
c0b4ff3902 python: Sphinx: 1.7.6 -> 1.7.7 2018-08-25 18:07:17 +02:00
Frederik Rietdijk
594d2c7ee9 python: soco: 0.15 -> 0.16 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
d9cb046ac8 python: setuptools: 40.0.0 -> 40.2.0 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
c65f6a473e python: s3fs: 0.1.5 -> 0.1.6 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
5c0ebe6446 python: reportlab: 3.5.2 -> 3.5.6 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
9fd849c3b9 python: reikna: 0.7.0 -> 0.7.1 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
b834f91ce5 python: regex: 2018.07.11 -> 2018.08.17 2018-08-25 18:07:16 +02:00
Frederik Rietdijk
8ae4298972 python: qtconsole: 4.3.1 -> 4.4.1 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
db3c5b485a python: python-docx: 0.8.6 -> 0.8.7 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
319d15e044 python: python-daemon: 2.1.2 -> 2.2.0 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
2f9a3664a4 python: pytest-xdist: 1.22.5 -> 1.23.0 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
617c8ee925 python: pytest: 3.7.1 -> 3.7.2 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
6a2f30ab54 python: Pyphen: 0.9.4 -> 0.9.5 2018-08-25 18:07:15 +02:00
Frederik Rietdijk
467df25af5 python: pyodbc: 4.0.23 -> 4.0.24 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
04bf203b9a python: pyhomematic: 0.1.46 -> 0.1.47 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
5544e3bfc1 python: pycryptodomex: 3.6.5 -> 3.6.6 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
45c173e487 python: pycryptodome: 3.6.5 -> 3.6.6 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
ecb7d5c7b3 python: psutil: 5.4.6 -> 5.4.7 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
31ee6d82dc python: pkgconfig: 1.3.1 -> 1.4.0 2018-08-25 18:07:14 +02:00
Frederik Rietdijk
d4e198ee1a python: phonenumbers: 8.9.10 -> 8.9.11 2018-08-25 18:07:13 +02:00
Frederik Rietdijk
58996be580 python: persistent: 4.3.0 -> 4.4.1 2018-08-25 18:07:13 +02:00
Frederik Rietdijk
b4424658b6 python: pathspec: 0.5.6 -> 0.5.7 2018-08-25 18:07:13 +02:00
Frederik Rietdijk
27c844e6c9 python: numpy: 1.15.0 -> 1.15.1 2018-08-25 18:07:13 +02:00
Frederik Rietdijk
f46bfd940b python: ncclient: 0.6.0 -> 0.6.2 2018-08-25 18:07:13 +02:00
Frederik Rietdijk
916bdbbf81 python: marshmallow-sqlalchemy: 0.14.0 -> 0.14.1 2018-08-25 18:07:13 +02:00
Frederik Rietdijk
f2d0ed0b24 python: mozdevice: 1.0.0 -> 1.0.1 2018-08-25 18:07:12 +02:00
Frederik Rietdijk
eacb2ef691 python: libusb1: 1.6.5 -> 1.6.6 2018-08-25 18:07:12 +02:00
Frederik Rietdijk
bee808d45d python: kubernetes: 6.0.0 -> 7.0.0 2018-08-25 18:07:12 +02:00
Frederik Rietdijk
6f25b9b490 python: Keras_Preprocessing: 1.0.2 -> 1.0.3 2018-08-25 18:07:12 +02:00
Frederik Rietdijk
0c0a7b319c python: Keras_Applications: 1.0.4 -> 1.0.5 2018-08-25 18:07:12 +02:00
Frederik Rietdijk
4b858b2847 python: jupyterlab: 0.33.10 -> 0.34.2 2018-08-25 18:07:12 +02:00
Frederik Rietdijk
a2eb8a7998 python: jsonrpc-websocket: 1.0.0 -> 1.0.1 2018-08-25 18:07:11 +02:00
Frederik Rietdijk
af3a68efbc python: jsonrpc-base: 1.0.1 -> 1.0.2 2018-08-25 18:07:11 +02:00