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5319 Commits

Author SHA1 Message Date
Alexander Kiselyov
27dcb4bd31 xoscope: 2.0 -> 2.3 2021-08-26 22:21:17 +03:00
davidak
1b78608c69
Merge pull request #135516 from bzizou/stacks 
stacks: Changed license to gpl3Plus
 2021-08-26 03:50:48 +02:00
Justin Bedo
b1b57ec04e
fastp: 0.20.1 -> 0.22.0 2021-08-25 09:52:07 +10:00
Sandro
73ad08e512
Merge pull request #135481 from kzvi/lean-update 
lean: 3.31.0 -> 3.32.1
 2021-08-25 00:43:28 +02:00
Dmitry Kalinkin
9c8f6efc55
xfitter: enable WITH_YAML support on darwin 2021-08-24 18:21:41 -04:00
Ryan Mulligan
8c2e2ffe95
Merge pull request #135212 from r-ryantm/auto-update/stacks 
stacks: 2.55 -> 2.59
 2021-08-24 09:03:17 -07:00
Bruno Bzeznik
a240cd9f4f stacks: Changed license to gpl3Plus 2021-08-24 09:47:24 +02:00
Ryan Mulligan
997f4452a4
Merge pull request #135255 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.7 -> 2.26.0
 2021-08-23 20:56:38 -07:00
kzvi
befe89f3d7 lean: 3.31.0 -> 3.32.1 2021-08-23 15:43:00 -07:00
davidak
d18866b1c2 nasc: 0.7.5 -> 0.8.0 2021-08-23 23:23:52 +02:00
Artturi
f2f1718aae
Merge pull request #135404 from r-ryantm/auto-update/workcraft 2021-08-23 17:28:09 +03:00
Artturi
55fdaafe15
Merge pull request #135398 from r-ryantm/auto-update/verifast 
verifast: 19.12 -> 21.04
 2021-08-23 17:25:35 +03:00
R. RyanTM
6b086631c6 workcraft: 3.3.2 -> 3.3.5 2021-08-23 08:01:40 +00:00
R. RyanTM
a73fc504b7 verifast: 19.12 -> 21.04 2021-08-23 07:29:27 +00:00
Sandro
00f31216e0
Merge pull request #130396 from collares/sage-9.4 
sage: 9.3 -> 9.4
 2021-08-22 21:26:12 +02:00
Sandro
607fea187f
Merge pull request #135262 from shnarazk/cadical-141 
cadical: 1.3.0 -> 1.4.1
 2021-08-22 20:01:59 +02:00
Sandro
354afc6ecd
Merge pull request #135285 from Mic92/fix-homepages 2021-08-22 18:30:31 +02:00
Bjørn Forsman
7f6cb5a226 eagle: put the desktop icon where it can be found 
Apparently $out/share/icons/ doesn't work anymore, but
$out/share/pixmaps/ do.
 2021-08-22 17:12:24 +02:00
Jörg Thalheim
11e5c3ac4b bowtie: fix homepage 2021-08-22 16:08:28 +02:00
Mauricio Collares
46c3703ec1 sage: 9.3 -> 9.4 2021-08-22 09:53:12 -03:00
Mauricio Collares
9be264795c pynac: import segfault fix 2021-08-22 09:53:12 -03:00
Mauricio Collares
b565d30c47 maxima: 5.44.0 -> 5.45.0 2021-08-22 09:53:08 -03:00
Narazaki, Shuji
960ddb6f8f cadical: 1.3.0 -> 1.4.1 2021-08-22 20:46:34 +09:00
R. RyanTM
742cd80071 picard-tools: 2.25.7 -> 2.26.0 2021-08-22 10:47:38 +00:00
Michael Raskin
fbfc876625
Merge pull request #135241 from r-ryantm/auto-update/opensmt 
opensmt: 2.0.1 -> 2.1.0
 2021-08-22 10:03:57 +00:00
R. RyanTM
3760bcfd58 opensmt: 2.0.1 -> 2.1.0 2021-08-22 09:30:15 +00:00
R. RyanTM
67c1256ddd stacks: 2.55 -> 2.59 2021-08-22 07:08:39 +00:00
R. RyanTM
0fb51f3bf1 emuflight-configurator: 0.3.6 -> 0.4.0 2021-08-21 22:59:43 +00:00
Sandro
b2573f352e
Merge pull request #134578 from smancill/phase-hooks-use-strings 
treewide: ensure pre/post phase hooks are strings
 2021-08-21 14:49:30 +02:00
Sandro Jäckel
026fb18487
ginac: switch to pname + version, cleanup 2021-08-21 11:20:15 +02:00
Sebastián Mancilla
8f94a33b38 treewide: ensure pre/post phase hooks are strings 
Some derivations use lib.optional or lib.optionals when setting pre/post
phase hooks. Ensure the proper lib.optionalString is used.
 2021-08-20 19:08:42 -04:00
Sandro
a9f66e941d
Merge pull request #134390 from smancill/colpack-darwin 
colpack: refactor builder and build on darwin
 2021-08-20 23:58:11 +02:00
Tom Repetti
1387ce732d openroad: init at 2.0 2021-08-20 10:16:03 -04:00
Sebastián Mancilla
50062cc371 colpack: refactor builder and build on darwin 
- Use autoreconfHook and set flags with configureFlags.
- Only enable OpenMP on Linux, so it can be built on Darwin.
- Do not install .la file. Other distros also remove them.
- Do not build examples.
- Install example sources into a proper location.
- Fixed license.
 2021-08-19 15:51:23 -04:00
Sandro
ac9f41a782
Merge pull request #134393 from smancill/bump-lp-solve 
lp_solve: 5.5.2.5 -> 5.5.2.11
 2021-08-19 21:36:59 +02:00
Sandro
33a0810405
Merge pull request #134720 from cab404/pymole-2.5.0 
pymol: 2.3.0 -> 2.5.0
 2021-08-19 19:51:09 +02:00
Zhenya Vinogradov
6714723bfa sage: fix icon location in the kernel definition 
The icon location is incorrect, `doc` directory exists inside `src`
directory, but not on the top level.
 2021-08-19 12:20:35 +03:00
Vladimir Serov
8992ae0cff
pymol: 2.3.0 -> 2.5.0 2021-08-19 10:16:38 +03:00
davidak
f2b906617d
Merge pull request #134361 from Stunkymonkey/why3-phases 
why3: deprecate phases
 2021-08-19 04:06:56 +02:00
Sebastián Mancilla
514c8569aa lp_solve: 5.5.2.5 -> 5.5.2.11 
- Use the generic builder and override build and install phases instead
  of using buildCommand and missing phases and hooks, like fixup.

- Fix build on Darwin by using the proper build script (ccc.osx).

  - Add cctools to build inputs because ccc.osx uses the libtool
    command.

  - The install_name of the library is not set so fix it with
    fixDarwinDylibNames.

- Install headers into the expected location $out/include/lpsolve
  instead of $out/include. This follows what other distro do.
 2021-08-17 23:20:47 -04:00
Ryan Mulligan
ad59a67ec0
Merge pull request #134444 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.1 -> 2.25.7
 2021-08-17 16:47:31 -07:00
Artturi
8ba3c63144
Merge pull request #133998 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 21.02.0 -> 21.05.2
 2021-08-17 23:00:21 +03:00
Gabriel Ebner
65cafb6030
Merge pull request #134474 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.19.0 -> 3.20.1
 2021-08-17 21:32:08 +02:00
Artturi
4f36420d07
Merge pull request #134045 from r-ryantm/auto-update/minimap2 
minimap2: 2.17 -> 2.22
 2021-08-17 22:22:47 +03:00
Ryan Mulligan
6cae9fd0c5
Merge pull request #134472 from r-ryantm/auto-update/vowpal-wabbit 
vowpal-wabbit: 8.10.0 -> 8.11.0
 2021-08-17 11:18:02 -07:00
R. RyanTM
73b3e147ea openhantek6022: 3.2.3 -> 3.2.4 2021-08-17 10:33:56 -07:00
R. RyanTM
cbd7e0dec1 qalculate-gtk: 3.19.0 -> 3.20.1 2021-08-17 16:04:54 +00:00
R. RyanTM
6d139ed34f vowpal-wabbit: 8.10.0 -> 8.11.0 2021-08-17 15:59:33 +00:00
R. RyanTM
1a23a8bb9e picard-tools: 2.25.1 -> 2.25.7 2021-08-17 13:50:42 +00:00
Gabriel Ebner
f267d39257
Merge pull request #134394 from r-ryantm/auto-update/elan 
elan: 1.0.6 -> 1.0.7
 2021-08-17 10:03:05 +02:00
R. RyanTM
b1868a8296 elan: 1.0.6 -> 1.0.7 2021-08-17 03:53:13 +00:00
Felix Buehler
c849ada0c5 why3: deprecate phases 2021-08-16 22:50:19 +02:00
Felix Buehler
8a8a949ffd tlaplusToolbox: deprecate phases 2021-08-16 21:54:44 +02:00
Felix Buehler
8ad1a7859a tlaps: deprecate phases 2021-08-16 21:54:22 +02:00
Ilan Joselevich
9f5b3fafa0 SPAdes: 3.15.2 -> 3.15.3 2021-08-15 11:12:42 +03:00
R. RyanTM
5caebbb040 verilator: 4.202 -> 4.210 2021-08-14 17:01:17 -05:00
R. RyanTM
5693a554e2 minimap2: 2.17 -> 2.22 2021-08-14 15:55:35 +00:00
R. RyanTM
0ba50b681e wxmaxima: 21.02.0 -> 21.05.2 2021-08-14 11:51:36 +00:00
Michael Raskin
1350415b52
Merge pull request #127798 from PhDyellow/r_bump_version 
R: 4.0.4 -> 4.1.0
 2021-08-13 13:41:07 +00:00
Phil Dyer
a21caa7f19 Remove unused fetchpatch from inputs 2021-08-13 10:19:31 +10:00
Phil Dyer
7f07184a8e Add Patch for aarch64 2021-08-13 10:16:59 +10:00
Sandro
7d75a19c60
Merge pull request #131463 from angustrau/logisim-evolution 2021-08-12 12:22:42 +02:00
Artturi
8ebdf7ec6b
Merge pull request #133322 from r-ryantm/auto-update/ginac 
ginac: 1.8.0 -> 1.8.1
 2021-08-11 23:01:14 +03:00
Phil Dyer
d37edcd3d5 R: 4.1.0 -> 4.1.1 2021-08-11 16:41:53 +10:00
R. RyanTM
e36200fc36 ginac: 1.8.0 -> 1.8.1 2021-08-10 07:09:09 +00:00
Artturi
5a587da43c
Merge pull request #133187 from Stunkymonkey/plm-fix 
plm: fix old link & deprecate phases
 2021-08-10 04:39:14 +03:00
Artturi
ae50676a71
Merge pull request #133235 from r-ryantm/auto-update/jmol 
jmol: 14.31.46 -> 14.31.49
 2021-08-10 03:36:07 +03:00
R. RyanTM
72a522e795 jmol: 14.31.46 -> 14.31.49 2021-08-09 07:27:37 +00:00
R. RyanTM
323134240a gama: 2.12 -> 2.14 2021-08-09 00:26:53 +00:00
Felix Buehler
d62ab96698 plm: fix old link & deprecate phases 2021-08-08 23:53:53 +02:00
Dmitry Kalinkin
e51edc1e64
Merge pull request #130903 from veprbl/pr/cwltool 
cwltool: init at 3.1.20210628163208
 2021-08-08 11:15:33 -04:00
Sandro
93ead26f57
Merge pull request #130359 from sheepforce/avogadro2 2021-08-08 13:07:33 +02:00
Sandro
fd26f351b5
Merge pull request #131493 from collares/polymake-4.4 
polymake: 3.2.rc4 -> 4.4
 2021-08-08 12:30:59 +02:00
Jörg Thalheim
5ec2eafb18
Merge pull request #125133 from sophrosyne97/fix_vhd2vl 
vhd2vl: fix build error
 2021-08-08 11:12:45 +01:00
Sandro
bfd533061e
Merge pull request #132881 from r-ryantm/auto-update/lepton-eda 2021-08-07 12:11:38 +02:00
Artturi
e69c8ea78e
Merge pull request #111691 from jbedo/bowtie2 
bowtie2: resolve missing runtime dependencies
 2021-08-07 04:03:47 +03:00
R. RyanTM
d06fec649b lepton-eda: 1.9.13-20201211 -> 1.9.16-20210731 2021-08-06 09:59:50 +00:00
Sandro
cfdee1710c
Merge pull request #109552 from tesq0/merge-request-lepton-eda 2021-08-05 15:35:14 +02:00
Mikolaj Galkowski
629e1d384d lepton-eda: init at 1.9.13-20201211 2021-08-05 14:18:10 +02:00
Markus Kowalewski
d26039d43b
openmolcas: 21.02 -> 21.06 2021-08-05 13:18:28 +02:00
Sandro
04b5e62d8d
Merge pull request #132468 from Stunkymonkey/applications-phases1 2021-08-05 09:37:57 +02:00
Markus Kowalewski
7d3b20253f
ergoscf: init at 3.8 2021-08-04 00:29:52 +02:00
Stig
c464dc811b
Merge pull request #132237 from Artturin/perlmagikupdate 
perlPackages.ImageMagick: 7.0.10 -> 7.0.11
 2021-08-03 00:16:14 +02:00
Felix Buehler
be219752d2 picard-tools: deprecate phases 2021-08-03 00:04:29 +02:00
Felix Buehler
4b883542fe varscan: deprecate phases 2021-08-03 00:04:16 +02:00
Felix Buehler
e3dd43360e eagle7: deprecate phases 2021-08-03 00:03:58 +02:00
Felix Buehler
f67a0a37f0 saw-tools: remove phases 2021-08-03 00:03:41 +02:00
Felix Buehler
7b20eb9e37 scilab-bin: remove phases 2021-08-03 00:03:12 +02:00
Felix Buehler
44cb64dba6 quantomatic: deprecate phases 2021-08-03 00:02:58 +02:00
Artturin
f173c77476 perlPackages.ImageMagick: rename from perlPackages.PerlMagick 2021-08-02 20:05:00 +03:00
Ben Wolsieffer
e8b00e9eeb mavproxy: 1.8.39 -> 1.8.40 2021-07-31 18:40:30 -04:00
Ben Siraphob
2f94991628 treewide: fix redirected URLs 
Using the script in maintainers/scripts/update-redirected-urls.sh
 2021-08-01 00:01:50 +07:00
Ben Siraphob
72d0a639ce
Merge pull request #131755 from r-ryantm/auto-update/libpoly 
libpoly: 0.1.9 -> 0.1.10
 2021-07-31 15:49:23 +07:00
Sandro
1524f36b3e
Merge pull request #131627 from jbedo/mosdepth 
mosdepth: 0.3.1 -> 0.3.2
 2021-07-29 13:56:24 +00:00
Frederik Rietdijk
8dcfe523f7
Merge pull request #131719 from FRidh/python2-to-3 
Python: further migrate packages from 2 to 3
 2021-07-29 10:49:00 +02:00
R. RyanTM
1d4ae0cfb7 libpoly: 0.1.9 -> 0.1.10 2021-07-28 00:31:53 +00:00
Frederik Rietdijk
8f6b07c223 maxima: use strictDeps and python3 2021-07-27 20:37:06 +02:00
github-actions[bot]
db6a26db02
Merge master into staging-next 2021-07-27 18:01:01 +00:00
Phillip Seeber
9504a98c32 avogadro2: init at 1.94.0 
avogadro2: code-review suggestions


avogadro2: review comments
 2021-07-27 18:43:15 +02:00
Sandro Jäckel
cebfbdff37
mrbayes: 3.2.7 -> 3.2.7a 2021-07-27 14:30:23 +02:00
github-actions[bot]
2692c2e427
Merge master into staging-next 2021-07-27 12:01:20 +00:00
Sandro
28d58fb25f
Merge pull request #131531 from SuperSandro2000/mrbayes 
mrbayes: modernize
 2021-07-27 10:57:14 +00:00
Sandro Jäckel
108ad942fb
mrbayes: modernize 2021-07-27 11:53:51 +02:00
Phil Dyer
9a88197fe7 R: 4.0.4 -> 4.1.0 
Co-authored-by: Mauricio Collares <244239+collares@users.noreply.github.com>
 2021-07-27 12:32:00 +10:00
github-actions[bot]
737604e550
Merge master into staging-next 2021-07-27 00:01:35 +00:00
Justin Bedo
d885373469
mosdepth: 0.3.1 -> 0.3.2 2021-07-27 09:52:22 +10:00
Guillaume Girol
455712841c
Merge pull request #130663 from symphorien/bitwuzla 
bitwuzla: init at unstable-2021-07-01
 2021-07-26 19:45:46 +00:00
Frederik Rietdijk
62370fb59a Merge remote-tracking branch 'upstream/master' into staging-next 2021-07-26 09:19:44 +02:00
Ryan Mulligan
cec4b2a274
Merge pull request #131319 from r-ryantm/auto-update/jmol 
jmol: 14.31.44 -> 14.31.46
 2021-07-25 19:41:51 -07:00
Mauricio Collares
045d6f35d9 polymake: 3.2.rc4 -> 4.4 2021-07-25 20:12:21 -03:00
Angus Trau
351b7d24e2
logisim: create desktop entry (#131450) 2021-07-25 17:46:34 -04:00
Guillaume Girol
1894e8d945 bitwuzla: init at unstable-2021-07-01 2021-07-25 15:52:25 +02:00
Angus Trau
92cced04c6 logisim-evolution: init at 3.5.0 2021-07-25 19:52:24 +10:00
github-actions[bot]
6a5e4f2c3d
Merge master into staging-next 2021-07-25 06:01:27 +00:00
Ben Siraphob
0f34985134
Merge pull request #122828 from balodja/openmodelica 2021-07-25 09:24:25 +07:00
github-actions[bot]
a37fbac53b
Merge master into staging-next 2021-07-25 00:01:35 +00:00
Sandro
224159802c
Merge pull request #131152 from r-ryantm/auto-update/bedops 
bedops: 2.4.39 -> 2.4.40
 2021-07-24 22:53:05 +00:00
github-actions[bot]
859acbc1bc
Merge master into staging-next 2021-07-24 18:01:04 +00:00
Vladimir Korolev
5c8561f11a openmodelica: 1.9.3 -> 1.17.0 with lots of changes 
Co-authored-by: Jaakko Luttinen <jaakko.luttinen@iki.fi>

Most of changes are:
* separate packages for different openmodelica components,
* qt4 -> qt5,
* patches to instruct the OMEdit wrapper with stdenv executables
  location,
* adoption of #89731 and #109595,
* openblas -> blas, lapack according to #83888,
* parallel building,
* getting rid of spurious build phases,
* correct the license,
* cross-compilation,
* forcing compiler to clang++ according to OM build recommendations,
* drop of pangox_compat according to #75909 and #76412,
* better dependencies, and more.
 2021-07-24 20:29:26 +03:00
Daniël de Kok
8cb9eabf96
Merge pull request #131177 from r-ryantm/auto-update/finalfusion-utils 
finalfusion-utils: 0.12.0 -> 0.13.0
 2021-07-24 14:47:49 +02:00
R. RyanTM
4e5b3b49e4 jmol: 14.31.44 -> 14.31.46 2021-07-24 09:22:42 +00:00
Guillaume Girol
0708fe494b cadical: install library 2021-07-23 21:19:27 +02:00
github-actions[bot]
cb1426e30a
Merge staging-next into staging 2021-07-23 18:01:46 +00:00
arjix
ebabecfd2a
nengo-gui: init at 0.4.8 (#130015) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-07-23 14:06:09 +02:00
R. RyanTM
934002f7a4 finalfusion-utils: 0.12.0 -> 0.13.0 2021-07-23 06:08:46 +00:00
R. RyanTM
d943e6aa12 bedops: 2.4.39 -> 2.4.40 2021-07-23 01:02:40 +00:00
github-actions[bot]
2e00ed4420
Merge staging-next into staging 2021-07-22 06:01:44 +00:00
Ben Siraphob
a5049e8caa
Merge pull request #130971 from siraben/parallel-coq 
coq: enable parallel building
 2021-07-22 10:00:42 +07:00
Dmitry Kalinkin
3f24366cda
cwltool: init at 3.1.20210628163208 2021-07-21 22:11:17 -04:00
Sandro
d06f7e07a6
Merge pull request #130925 from SuperSandro2000/python-aliases 2021-07-22 03:21:11 +02:00
Ben Siraphob
7c1d4d8255 coq: enable parallel building 2021-07-22 02:04:47 +07:00
github-actions[bot]
7a1e77336a
Merge staging-next into staging 2021-07-21 18:01:41 +00:00
Sandro Jäckel
b4099137b1
pythonPackages: deprecate ConfigArgParse alias 2021-07-21 13:32:54 +02:00
Sandro
aee461ddb4
toil: update homepage 2021-07-21 13:28:37 +02:00
Dmitry Kalinkin
866fe59150
toil: init at 5.4.0 2021-07-20 22:18:08 -04:00
github-actions[bot]
23c6d36ba0
Merge staging-next into staging 2021-07-20 18:01:42 +00:00
Sandro
8472d44b82
Merge pull request #130812 from SuperSandro2000/SuperSandro2000-patch-4 
logisim: cleanup
 2021-07-20 19:48:37 +02:00
Sandro
fd1ab319b7
logisim: cleanup 2021-07-20 18:33:48 +02:00
Sandro
c401885fe1
Merge pull request #130192 from Stunkymonkey/logisim-phases 
logisim: deprecate phases
 2021-07-20 18:32:40 +02:00
github-actions[bot]
0e13cd9f49
Merge staging-next into staging 2021-07-20 12:02:50 +00:00
Sandro
4a340627aa
Merge pull request #130661 from veprbl/pr/snakemake_6_6_1 2021-07-20 11:05:53 +02:00
Ben Siraphob
e8599765f5
Merge pull request #130638 from siraben/par-treewide 
treewide: remove unnecessary enableParallelBuilding when using cmake, meson, qmake
 2021-07-20 12:10:21 +07:00
Ben Siraphob
4ce8c34049 treewide: remove unnecessary enableParallelBuilding when using qmake 2021-07-20 10:32:58 +07:00
github-actions[bot]
e86ff5c2b2
Merge staging-next into staging 2021-07-20 00:02:21 +00:00
Guillaume Girol
6554384a70 boolector: 3.2.1 -> 3.2.2 2021-07-19 16:11:01 -07:00
Dmitry Kalinkin
3a79b1fece
snakemake: 6.5.3 -> 6.6.1 2021-07-19 16:22:36 -04:00
Dmitry Kalinkin
a93f2af20b
snakemake: add missing optional dependenices 
These are needed to generate reports
 2021-07-19 16:19:27 -04:00
github-actions[bot]
c455b1a657
Merge staging-next into staging 2021-07-19 18:01:44 +00:00
Ben Siraphob
d53846e29e
Merge pull request #130583 from jvanbruegge/isabelle2021 
Isabelle: 2020 -> 2021
 2021-07-19 20:56:48 +07:00
Millian Poquet
c6f34aeaef simgrid: compile tests in parallel 2021-07-19 14:05:17 +02:00
Millian Poquet
c4ec6ffb78 simgrid: fix paths in smpicc/smpicxx 2021-07-19 14:04:57 +02:00
Millian Poquet
33f915f241 simgrid: propagate boost 
Since SimGrid include files directly include boost files,
most SimGrid users need boost as well.
 2021-07-19 14:03:50 +02:00
Millian Poquet
2d05c2d535 simgrid: 3.27 -> 3.28 2021-07-19 14:01:30 +02:00
Jan van Brügge
e32da890c9
isabelle: Add desktop entry 2021-07-19 12:04:30 +02:00
github-actions[bot]
dde34afc63
Merge staging-next into staging 2021-07-19 00:02:18 +00:00
Jan van Brügge
9111bd40b2
isabelle: 2020 -> 2021 2021-07-18 23:51:36 +02:00
Sandro
d5bd34ebf2
treewide: convert phases that contain ":" to dont* = true (#130500) 2021-07-18 23:42:48 +02:00
github-actions[bot]
09be4e7750
Merge staging-next into staging 2021-07-18 12:01:50 +00:00
Jörg Thalheim
d4b8356ce2 pcalc: 20141224 -> 20181202 2021-07-18 08:40:09 +02:00
github-actions[bot]
08a8809bfe
Merge staging-next into staging 2021-07-18 00:02:06 +00:00
Sandro
24debc24c6
Merge pull request #130194 from Stunkymonkey/fdr-phases 
fdr: deprecate phases
 2021-07-18 00:41:56 +02:00
Felix Buehler
82cb33a0ae treewide: remove meta.version 2021-07-18 00:07:38 +02:00
github-actions[bot]
11332e9137
Merge staging-next into staging 2021-07-17 18:01:28 +00:00
Robert Scott
681821fefe
Merge pull request #129834 from r-ryantm/auto-update/bcftools 
bcftools: 1.11 -> 1.13
 2021-07-17 18:26:47 +01:00
github-actions[bot]
732bd85cf5
Merge staging-next into staging 2021-07-17 12:01:55 +00:00
Guillaume Girol
cb7e11dcb3
Merge pull request #130404 from collares/pynac-0.7.29 
pynac: 0.7.27 -> 0.7.29
 2021-07-17 09:08:46 +00:00
(cdep)illabout
299082636c
cedille: set no hydra platforms 2021-07-17 11:17:09 +09:00
(cdep)illabout
ff0c051daf
cedille: mark broken 2021-07-17 11:10:26 +09:00
Mauricio Collares
183071d282 pynac: 0.7.27 -> 0.7.29 2021-07-16 19:30:11 -03:00
github-actions[bot]
ed4094a728
Merge staging-next into staging 2021-07-16 00:02:18 +00:00
Sandro
9b8e8b2047
Merge pull request #130193 from Stunkymonkey/verifast-phases 
verifast: deprecate phases
 2021-07-15 23:40:17 +02:00
Sandro
daa42d5347
Merge pull request #130210 from veprbl/pr/root_6_24_02 2021-07-15 22:52:29 +02:00
Sandro
025cab89d9
Merge pull request #130187 from Stunkymonkey/workcraft-phases 
workcraft: deeprecate phases
 2021-07-15 21:59:16 +02:00
github-actions[bot]
2165de1758
Merge staging-next into staging 2021-07-15 18:02:07 +00:00
FliegendeWurst
5a1b72a6b1 mathematica: 12.3.0 -> 12.3.1 2021-07-15 15:29:33 +02:00
github-actions[bot]
0db5cea36d
Merge staging-next into staging 2021-07-15 06:01:32 +00:00
Vincent Laporte
e57571bdb6 gappa: 1.3.5 → 1.4.0 2021-07-15 07:55:52 +02:00
Dmitry Kalinkin
1cbb9c64d1
root,root5: apply nixpkgs-fmt 2021-07-14 16:23:09 -04:00
Dmitry Kalinkin
62ab958fb0
root: 6.24.00 -> 6.24.02 2021-07-14 14:58:15 -04:00
github-actions[bot]
6630d8e9bb
Merge staging-next into staging 2021-07-14 18:01:45 +00:00
Felix Buehler
7ab67cfa4c fdr: deprecate phases 2021-07-14 16:42:23 +02:00
Felix Buehler
b6fb4cedaf verifast: deprecate phases 2021-07-14 16:41:30 +02:00
Felix Buehler
ac75afe239 logisim: deprecate phases 2021-07-14 16:40:28 +02:00
Felix Buehler
cdf9e86ad1 leo3-bin: deprecate phases 2021-07-14 16:38:38 +02:00
Felix Buehler
3680a85bcb workcraft: deeprecate phases 2021-07-14 16:33:41 +02:00
Sandro Jäckel
388a4ef423
treewide: convert all links git.archlinux.org to github.com/archlinux/svntogit-* 2021-07-14 03:35:21 +02:00
Dmitry Kalinkin
43ae777382
Merge pull request #130090 from evils/kicad 
kicad-unstable: update; now requires python
 2021-07-13 14:20:39 -04:00
Evils
0e6d186906 kicad-unstable: needs python 
needed since upstream merge request 796 got merged on 2021-06-01
 2021-07-13 12:47:26 +02:00
Evils
428d2a2f51 kicad-unstable: 2021-05-16 -> 2021-07-12 2021-07-13 12:46:17 +02:00
github-actions[bot]
5779c9a1dd
Merge staging-next into staging 2021-07-12 18:01:40 +00:00
markuskowa
cd55326158
Merge pull request #129662 from sheepforce/cp2k 
CP2K: init at 8.1.0
 2021-07-12 19:28:33 +02:00
Ryan Mulligan
3c82ddb28c
Merge pull request #130016 from r-ryantm/auto-update/engauge-digitizer 
engauge-digitizer: 12.1 -> 12.2.2
 2021-07-12 11:08:24 -05:00
R. RyanTM
d342554ec5 engauge-digitizer: 12.1 -> 12.2.2 2021-07-12 14:06:35 +00:00
Markus Kowalewski
77be900d67
octopus: cleanup derivation 2021-07-12 14:15:05 +02:00
Markus Kowalewski
0a1167fd0b
octopus: 10.3 -> 10.5 2021-07-12 13:31:28 +02:00
markuskowa
13b3e91794
Merge pull request #128856 from cburstedde/package-petsc-p4est 
petsc: refactor using mpi and p4est
 2021-07-12 11:46:44 +02:00
Sandro
9afe59f2e6
Merge pull request #129938 from eduardosm/diylc 2021-07-11 22:40:33 +02:00
Dmitry Kalinkin
45bed6d99f
snakemake: 6.5.0 -> 6.5.3 2021-07-11 10:40:09 -04:00
Eduardo Sánchez Muñoz
8f66191e32 diylc: 4.17.0 -> 4.18.0 2021-07-11 15:45:23 +02:00
R. RyanTM
7177212409 bcftools: 1.11 -> 1.13 2021-07-10 10:15:10 +00:00
Phillip Seeber
5c4d869ada engauge-digitizer: init at 12.1 
code-review hints


engauge-digitizer: code review suggestions
 2021-07-09 13:27:30 +02:00
Phillip Seeber
e503e43a03 cp2k: init at 8.2.0 
cp2k: cleanup/formatting


cp2k: change license


cp2k: remove comment
 2021-07-09 11:27:35 +02:00
Sandro
43b68c4bca dkh: init at 1.2 
Apply suggestions from code review
 2021-07-09 10:40:51 +02:00
Carsten Burstedde
25456656ef
Merge branch 'master' into package-petsc-p4est 2021-07-06 07:19:35 +02:00
Michael Raskin
cb098c86b0
Merge pull request #129280 from r-ryantm/auto-update/jmol 
jmol: 14.31.42 -> 14.31.44
 2021-07-06 04:04:19 +00:00
Sandro
90fa755d73
Merge pull request #123692 from collares/eclib-20210503 2021-07-06 01:59:32 +02:00
Carsten Burstedde
705afbd338
Merge branch 'master' into package-petsc-p4est 2021-07-05 19:30:59 +02:00
R. RyanTM
0e2aad0d3f jmol: 14.31.42 -> 14.31.44 2021-07-04 22:17:25 +00:00
github-actions[bot]
a6fdcf8d52
Merge master into staging-next 2021-07-04 12:01:06 +00:00
Gabriel Ebner
5fd14f54c7 qalculate-gtk: 3.18.0 -> 3.19.0 2021-07-04 10:41:23 +02:00
Gabriel Ebner
7880aaa756
Merge pull request #124454 from r-ryantm/auto-update/elan 
elan: 1.0.2 -> 1.0.6
 2021-07-04 10:19:58 +02:00
github-actions[bot]
89ee82a6e9
Merge master into staging-next 2021-07-04 06:01:11 +00:00
Sandro
8723bd8119
Merge pull request #129122 from dotlambda/dateutil-alias 2021-07-04 02:53:34 +02:00
Dmitry Kalinkin
f0fbfdefe7
Merge branch 'master' into staging-next 2021-07-03 17:51:15 -04:00
Mauricio Collares
30cd543b32 eclib: 20190909 -> 20210625, import sage update patch 2021-07-03 12:55:52 -03:00
R. RyanTM
f32e760b64 gwyddion: 2.58 -> 2.59 2021-07-03 11:56:51 +00:00
Robert Schütz
1ec5651913 treewide: use pythonPackages.python-dateutil instead of pythonPackages.dateutil 2021-07-03 13:45:57 +02:00
github-actions[bot]
77a94d88ad
Merge master into staging-next 2021-07-03 06:01:13 +00:00
Sarunas Valaskevicius
5b69b1f3fe tlaToolbox: fix crash on file open dialog 2021-07-02 23:04:39 +01:00
github-actions[bot]
4147e7d4a9
Merge master into staging-next 2021-07-02 18:01:01 +00:00
Gabriel Ebner
b38329171a
Merge pull request #128926 from collares/lean-3.31 
lean: 3.30.0 -> 3.31.0
 2021-07-02 19:57:13 +02:00
github-actions[bot]
dcd8f68f13
Merge master into staging-next 2021-07-02 00:01:33 +00:00
Mauricio Collares
258e959faf lean: 3.30.0 -> 3.31.0 2021-07-01 20:47:08 -03:00
Michael Raskin
980ebd8f1e
Merge pull request #128831 from collares/sage-sphinx-4 
sage: import sphinx and sympy update patches, update pari 2.13 patch
 2021-07-01 21:42:08 +00:00
Carsten Burstedde
870b2847a4
getdp: align with latest petsc dependency 2021-07-01 22:57:26 +02:00
github-actions[bot]
9d5de3eca1
Merge master into staging-next 2021-07-01 18:01:04 +00:00
Ben Siraphob
ee5b85e00e
Merge pull request #128900 from siraben/hol-unix 
hol: expand platforms to unix
 2021-07-01 23:33:15 +07:00
Ben Siraphob
e86f5bfa8f hol: expand platforms to unix 2021-07-01 22:19:02 +07:00
Michael Raskin
7ba5c6915d
Merge pull request #128167 from r-ryantm/auto-update/jmol 
jmol: 14.31.41 -> 14.31.42
 2021-07-01 12:56:32 +00:00
Mauricio Collares
17e024867f sage: import sphinx and sympy update patches, update pari 2.13 patch 2021-06-30 20:26:16 -03:00
github-actions[bot]
1a1f2ce95d
Merge master into staging-next 2021-06-30 18:04:09 +00:00
Théo Zimmermann
cc84f3906e coq: fix issue introduced in #128603 
This triggerred coq-community/coq-nix-toolbox#42.
 2021-06-30 16:38:39 +02:00
github-actions[bot]
629cea2cd0
Merge master into staging-next 2021-06-30 12:04:22 +00:00
R. RyanTM
360c8128bb gtkwave: 3.3.109 -> 3.3.110 2021-06-29 23:46:07 -07:00
Hunter Jones
ef892b0a92 phd2: 2.6.9dev1 -> 2.6.10 2021-06-29 23:42:21 -07:00
R. RyanTM
c4e9746406 emuflight-configurator: 0.3.5 -> 0.3.6 2021-06-29 23:28:17 -07:00
github-actions[bot]
7f05df0a91
Merge master into staging-next 2021-06-30 06:04:18 +00:00
Théo Zimmermann
d3bb50e7da
Coq: adapt for upcoming 8.14 (#128603) 2021-06-30 04:47:31 +02:00
github-actions[bot]
0fa08dae1b
Merge master into staging-next 2021-06-30 00:08:50 +00:00
Sandro
be4382dcb3
Merge pull request #126878 from mtreca/master 2021-06-30 01:55:22 +02:00
github-actions[bot]
fc4cc6ca93
Merge master into staging-next 2021-06-29 12:04:29 +00:00
mtreca
66ca618b33 sumo: 1.8.0 -> 1.9.2 2021-06-29 11:24:41 +02:00
Andrew Childs
55dcd99859 root: use pure CoreSymbolication on Darwin 
The current build works by linking against CoreSymbolication in
/System/Library/PrivateFrameworks. This is impure and doesn't work in
newer versions of macOS.

See https://github.com/NixOS/nixpkgs/issues/128576
 2021-06-29 11:00:05 +09:00
github-actions[bot]
265a07c480
Merge staging-next into staging 2021-06-27 12:04:27 +00:00
Vincent Laporte
d60534722e why3: use GTK3 2021-06-27 09:03:12 +02:00
Vincent Laporte
773bdf6998 why3: 1.3.3 → 1.4.0 
framac: 22.0 → 23.0-rc1
 2021-06-27 09:03:12 +02:00
github-actions[bot]
1016b5a6ba
Merge staging-next into staging 2021-06-27 00:10:43 +00:00
Hunter Jones
193e721cb2 siril: 0.99.8.1 -> 0.99.10.1 2021-06-26 12:57:56 -05:00
R. RyanTM
517fdc1aea jmol: 14.31.41 -> 14.31.42 2021-06-26 04:00:04 +00:00
github-actions[bot]
947012b992
Merge staging-next into staging 2021-06-26 00:09:11 +00:00
Sandro
323e8cac82
Merge pull request #128069 from Artturin/openhantek 
openhantek6022: 3.1.3 -> 3.2.3
 2021-06-25 15:45:00 +02:00
github-actions[bot]
be086cc67b
Merge staging-next into staging 2021-06-25 12:06:08 +00:00
Sandro
c6b318fdf9
Merge pull request #128061 from lopsided98/mavproxy-update 
mavproxy: 1.8.37 -> 1.8.39
 2021-06-25 12:11:43 +02:00
Artturin
10968efa69 openhantek6022: 3.1.3 -> 3.2.3 2021-06-25 08:42:23 +03:00
Ben Wolsieffer
6a0c1538fc mavproxy: 1.8.37 -> 1.8.39 2021-06-24 20:22:22 -04:00
Sandro
e7812f46fe
Merge pull request #128025 from Ma27/bump-stellarium 
stellarium: 0.21.0 -> 0.21.1
 2021-06-24 23:25:35 +02:00
Sandro
1c8bc6c2f1
Merge pull request #127829 from veprbl/pr/snakemake_6_5_0 2021-06-24 22:46:26 +02:00
Maximilian Bosch
ea56e08d62
stellarium: 0.21.0 -> 0.21.1 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.1
 2021-06-24 18:28:40 +02:00
Dmitry Kalinkin
e3678ae8a6
snakemake: 6.0.5 -> 6.5.0 2021-06-24 11:36:26 -04:00
Sandro
6ff52436cf
Merge pull request #127910 from dotlambda/scipy_1_4-drop 2021-06-24 11:43:37 +02:00
Michael Raskin
8481a131ef
Merge pull request #127893 from r-ryantm/auto-update/eprover 
eprover: 2.5 -> 2.6
 2021-06-24 07:42:47 +00:00
github-actions[bot]
1f528e6ac6
Merge staging-next into staging 2021-06-24 00:06:31 +00:00
Anderson Torres
65db0350fe
Merge pull request #127905 from AndersonTorres/new-4ti2 
4ti2: init at 1.6.9
 2021-06-23 21:01:05 -03:00
AndersonTorres
68dd7bca1b 4ti2: add myself to maintainers 2021-06-23 20:23:30 -03:00
github-actions[bot]
bcc720d9c5
Merge staging-next into staging 2021-06-23 18:04:33 +00:00
Robert Schütz
cc2924ee9a nanovna-saver: don't double-wrap 2021-06-23 18:39:00 +02:00
Robert Schütz
8df3adc8f8 nanovna-saver: use packageOverrides 2021-06-23 18:34:36 +02:00
sternenseemann
ba01fb866a glsurf: use ocamlPackages_4_05 
Update to somewhat newer OCaml, so we can hopefully retire older sets in
the future.
 2021-06-23 14:52:32 +00:00
Sandro
ac6b100b2e
Merge pull request #127524 from beezow/master 2021-06-23 15:44:04 +02:00
AndersonTorres
4b0789d7c5 4ti2: init at 1.6.9 2021-06-23 10:35:00 -03:00
R. RyanTM
b7ecc3db11 eprover: 2.5 -> 2.6 2021-06-23 11:11:41 +00:00
Sandro
fac2f63654
Apply suggestions from code review 2021-06-23 11:13:00 +02:00
Sandro
22bae36e74
Merge pull request #127826 from veprbl/pr/mcfm_init 
mcfm: init at 10.0.1
 2021-06-23 10:41:15 +02:00
R. RyanTM
f64fb8bd31 jmol: 14.31.39 -> 14.31.41 2021-06-22 19:47:51 -07:00
beezow
4eb4579833 emuflight-configurator: init at 0.3.5 2021-06-22 17:23:01 -06:00
Dmitry Kalinkin
2aafbfb618
mcfm: init at 10.0.1 2021-06-22 17:27:21 -04:00
Sandro
b2a93084f0
Merge pull request #127355 from cjab/programmer-calculator 2021-06-22 17:12:33 +02:00
Chad Jablonski
11b44aaa11 programmer-calculator: init at 2.1 2021-06-22 10:03:56 -04:00
Sandro
5f3ebbc661
Merge pull request #123242 from xworld21/eukleides-texlive-deps-instead-of-buildinputs 2021-06-21 11:57:06 +02:00
Vincenzo Mantova
b0c6bd9211 eukleides: depend on texinfo4 instead of overriding texinfo 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
b88e8d999c eukleides: allow PostScript transparency 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
8fb57a90eb eukleides: add getopt in euktoeps wrapper 2021-06-21 08:17:11 +01:00
Johannes Arnold
0d635e2646 element: init at 1.0.0 2021-06-21 00:20:26 +02:00
Vincenzo Mantova
190ba6ee72 eukleides: specify texlive dependencies instead of buildInputs 2021-06-20 20:17:22 +01:00
Axel Forsman
d8984f8522
gurobi: 8.1.0 -> 9.1.2 (#120525) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-06-18 10:43:39 +02:00
github-actions[bot]
51bf815af0
Merge master into staging-next 2021-06-17 00:09:48 +00:00
Sandro
cb3f4288f5
Merge pull request #125395 from musfay/fritzing 
fritzing: 0.9.4-498 -> 0.9.6
 2021-06-17 01:12:56 +02:00
R. RyanTM
816d212fa2 gappa: 1.3.5 -> 1.4.0 2021-06-16 13:16:13 -07:00
Mustafa Çalışkan
b556b25aad fritzing: 0.9.4-498 -> 0.9.6 2021-06-16 22:56:46 +03:00
Jonathan Ringer
d1d37feb6d
Merge branch 'master' into staging-next 
Conflicts:
  pkgs/servers/x11/xorg/default.nix
 2021-06-15 19:32:36 -07:00
scalavision
c6ca3545ae
truvari: 2.0.2 -> 2.1.1 (#126839) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-06-15 22:14:20 +02:00
Jan Tojnar
91171e2955
Merge branch 'master' into staging-next 
Regenerated pkgs/servers/x11/xorg/default.nix to resolve the conflict.
 2021-06-15 11:19:41 +02:00
Sandro
d2c1a26246
Merge pull request #126400 from nagy/vowpal-wabbit-boost17x 
vowpal-wabbit: use boost17x
 2021-06-14 19:39:52 +02:00
github-actions[bot]
13f31f60bf
Merge master into staging-next 2021-06-14 00:08:48 +00:00
Mauricio Scheffer
0516afb267 starspace: build with gzip support 2021-06-13 16:20:58 +01:00
github-actions[bot]
19b5e1f139
Merge master into staging-next 2021-06-12 06:08:17 +00:00
Ryan Mulligan
26a88ecce8
Merge pull request #125391 from r-ryantm/auto-update/horizon-eda 
horizon-eda: 1.4.0 -> 2.0.0
 2021-06-11 17:34:07 -07:00
github-actions[bot]
da8d931c82
Merge master into staging-next 2021-06-10 06:07:24 +00:00
AndersonTorres
e9e5f5f84d Change all alsaLib references to alsa-lib 2021-06-10 01:12:49 -03:00
Daniel Nagy
f2e402f9cd
vowpal-wabbit: use boost17x 2021-06-09 22:56:36 +02:00
github-actions[bot]
f242b07bc2
Merge master into staging-next 2021-06-09 18:14:51 +00:00
Sandro
47480918a5
Merge pull request #125802 from yipengsun/root-6-24-00 2021-06-09 15:42:05 +02:00
Martin Weinelt
3da00fa467
Merge branch 'master' into staging-next 2021-06-09 14:18:55 +02:00
Yipeng Sun
ffced8d681 root: 6.22.08 -> 6.24.00 
We switched to the bundled llvm-clang combo because to use the llvm
provided in nixpkgs, clang also needs to be patched and built
externally, which is too much trouble.
 2021-06-09 14:06:13 +02:00
Sandro
9bee2bcce7
Merge pull request #125775 from FliegendeWurst/mathematica-12.3.0 2021-06-09 12:59:27 +02:00
github-actions[bot]
e8f8906d68
Merge master into staging-next 2021-06-08 18:16:27 +00:00
Chua Hou
f38ee12908
fdr: 4.2.3 -> 4.2.7 
New releases/homepage are hosted on cocotec.io.
 2021-06-07 11:42:30 +08:00
github-actions[bot]
47de0ebf63
Merge master into staging-next 2021-06-06 06:23:08 +00:00
Sandro
27978c0ae9
Merge pull request #125829 from KarlJoad/verilator-license 
verilator: specify lgpl3Only license
 2021-06-06 03:34:59 +02:00
Karl Hallsby
38db89df05 verilator: specify lgpl3Only and artistic2 licenses 2021-06-05 20:14:54 -05:00
github-actions[bot]
51ecdeca84
Merge master into staging-next 2021-06-06 00:15:19 +00:00
Sandro
2e7cde1ba1
Merge pull request #125679 from polygon/dsview 2021-06-05 21:29:16 +02:00
github-actions[bot]
d9d6f71e43
Merge master into staging-next 2021-06-05 18:30:28 +00:00
Robert Scott
16f5b7fc92
Merge pull request #125697 from KarlJoad/update-verilator 
verilator: 4.110 -> 4.202
 2021-06-05 19:13:29 +01:00
Sandro
c037394f5f
Merge pull request #117606 from bgamari/graphia 2021-06-05 16:31:10 +02:00
github-actions[bot]
68272fcebd
Merge master into staging-next 2021-06-05 12:14:47 +00:00
Vincent Laporte
5ca9831cb1 ocamlPackages.menhir: 20190626 → 20210419 
ocamlPackages.menhirLib: init at 20210419
ocamlPackages.menhirSdk: init at 20210419
 2021-06-05 13:38:01 +02:00
FliegendeWurst
09127f1415 mathematica: 12.2.0 -> 12.3.0 2021-06-05 11:32:04 +02:00
github-actions[bot]
ad63c3d31f
Merge master into staging-next 2021-06-04 19:40:59 +00:00
Karl Hallsby
45288e9fec verilator: 4.110 -> 4.202 2021-06-04 10:48:19 -05:00
Stephen Morgan
f12d58f223 geogebra6: 6-0-631-0 -> 6-0-644-0 2021-06-04 23:49:04 +10:00
Stephen Morgan
b6f4313e4a geogebra: 5-0-620-0 -> 5-0-644-0 2021-06-04 23:48:27 +10:00
polygon
da5278cbd5 dsview: fix build 
Unneeded extern-C scopes around glib-includes would cause build
failures. Upstream has this fixed, but the fixes are not yet part
of a new release. Apply the fixing commit from upstream master
selectively. This should be removed once there is a new upstream
release.
 2021-06-04 15:44:27 +02:00
R. RyanTM
8d49cec11c horizon-eda: 1.4.0 -> 2.0.0 2021-06-02 15:15:04 +00:00
github-actions[bot]
9e56e764cd
Merge master into staging-next 2021-06-02 13:08:13 +00:00
Ben Gamari
dcfaa98677 graphia: init at 2.2 
Graphia is a relatively new tool for graph visualisation and analysis,
in the same vain as gephi.
 2021-06-02 09:07:32 -04:00
Markus Kowalewski
dd9bc408af
lammps: update GPL2 license field 2021-06-02 13:23:09 +02:00
Markus Kowalewski
ed22820646
lammps: stable_22Aug2018 -> stable_29Oct2020 2021-06-02 13:23:09 +02:00
Jörg Thalheim
e7235d863c
vhd2vl: apply linting suggestions 2021-06-01 07:29:13 +02:00
sophrosyne97
0c2c703891 vhd2vl: fix build error 2021-05-31 18:14:32 -04:00
github-actions[bot]
be7141706d
Merge master into staging-next 2021-05-31 02:05:27 +00:00
Sandro
6094bec3c3
Merge pull request #124997 from veprbl/pr/xfitter_format 
xfitter: remove `hardeningDisable = [ "format" ];`
 2021-05-31 00:56:26 +02:00
Dmitry Kalinkin
b72b3c5571
xfitter: remove hardeningDisable = [ "format" ]; 
Not needed after f42aa7e1 ('cc-wrapper: set FC when langFortran is on')
 2021-05-30 18:34:35 -04:00
github-actions[bot]
2867d5301f
Merge master into staging-next 2021-05-30 19:15:10 +00:00
Mauricio Collares
2c7d2ce295 sageWithDoc: fix documentation symlinks 2021-05-30 13:51:15 -03:00
github-actions[bot]
f385b431a7
Merge master into staging-next 2021-05-27 06:45:59 +00:00
R. RyanTM
089915f634 bowtie2: 2.4.3 -> 2.4.4 2021-05-26 23:43:08 -07:00
R. RyanTM
14018b71dd mavproxy: 1.8.36 -> 1.8.37 2021-05-26 23:42:35 -07:00
github-actions[bot]
0e7ab2d48d
Merge master into staging-next 2021-05-26 18:54:42 +00:00
Gabriel Ebner
4aa2e32246
Merge pull request #124507 from collares/olean-cache-misses 
lean: substitute release commit sha1 (so upstream oleans are compatible with nixpkgs lean)
 2021-05-26 18:34:56 +02:00
Mauricio Collares
cbaf78cdaa lean: substitute release commit sha1 2021-05-26 11:53:55 -03:00
R. RyanTM
15c278930c elan: 1.0.2 -> 1.0.6 2021-05-26 05:44:59 +00:00
github-actions[bot]
6d73490cb4
Merge master into staging-next 2021-05-26 01:11:31 +00:00
Pavol Rusnak
2c3cbef68d
Merge pull request #120840 from prusnak/viennarna 
ViennaRNA: 2.4.17 -> 2.4.18
 2021-05-26 00:03:55 +02:00
Pavol Rusnak
4bda49e963
ViennaRNA: 2.4.17 -> 2.4.18 2021-05-26 00:01:06 +02:00
Ryan Mulligan
e2d59eee64
Merge pull request #124094 from r-ryantm/auto-update/marvin 
marvin: 21.3.0 -> 21.9.0
 2021-05-25 12:42:45 -07:00
R. RyanTM
cb70ce62ab marvin: 21.3.0 -> 21.9.0 2021-05-23 02:24:31 +00:00
Jonathan Ringer
b9b9cdb87c
Merge remote-tracking branch 'origin/staging' into staging-next 2021-05-22 19:23:14 -07:00
Jonathan Ringer
11a9ac00fc
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
 pkgs/tools/networking/xh/default.nix
 2021-05-22 18:19:10 -07:00
Sandro Jäckel
d6ff646b3f pythonPackages.smart_open: rename to smart-open 2021-05-22 15:02:50 -07:00
Stéphan Kochen
c47425a230 sambamba: fix darwin build 2021-05-22 20:56:09 +02:00
github-actions[bot]
d5714df652
Merge staging-next into staging 2021-05-22 06:21:58 +00:00
github-actions[bot]
cc35c7fc85
Merge master into staging-next 2021-05-22 06:21:55 +00:00
Robert Scott
bcc99b83d0 libpoly: fix darwin build 
issue reported upstream
 2021-05-21 20:21:20 -07:00
Michael Raskin
d0fd8a029d
Merge pull request #123281 from r-ryantm/auto-update/jmol 
jmol: 14.31.38 -> 14.31.39
 2021-05-21 19:42:56 +00:00
Jonathan Ringer
6b15fdce86
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
 pkgs/shells/ion/default.nix
 pkgs/tools/misc/cicero-tui/default.nix
 2021-05-20 22:11:42 -07:00
Mauricio Collares
22c86a0466 sageWithDoc: fix static asset deduplication 2021-05-20 18:29:02 -07:00
Mauricio Collares
874d1aba74 sageWithDoc: update sagedoc.py test for sphinx 3.5 2021-05-20 18:29:02 -07:00
Mauricio Collares
cd9e8e284c sage: fix deprecation warning from matplotlib upgrade 2021-05-20 18:29:02 -07:00
Jonathan Ringer
14f3686af1
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  pkgs/applications/terminal-emulators/alacritty/default.nix
  pkgs/servers/clickhouse/default.nix
 2021-05-20 09:12:42 -07:00
markuskowa
b0b97660af
Merge pull request #123667 from markuskowa/upd-molcas 
openmolcas: 20.10 -> 21.02
 2021-05-19 23:17:31 +02:00
Jonathan Ringer
c1f8a15dac
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  nixos/doc/manual/release-notes/rl-2105.xml
  pkgs/tools/security/sequoia/default.nix
 2021-05-19 10:39:54 -07:00
Pavol Rusnak
f7ed00be13
Merge pull request #123689 from prusnak/bcal 
bcal: cleanup package, enable aarch64-darwin build
 2021-05-19 17:47:35 +02:00
Pavol Rusnak
6996896b48
bcal: cleanup package, enable aarch64-darwin build 2021-05-19 16:36:17 +02:00
Timo Kaufmann
6cf6470429
Merge pull request #122624 from collares/pari-2.13 
pari: 2.11.4 -> 2.13.1, update sage test expectations
 2021-05-19 16:07:15 +02:00
Markus Kowalewski
40f276c07d
openmolcas: 20.10 -> 21.02 2021-05-19 13:44:46 +02:00
github-actions[bot]
7000ae2b9a
Merge master into staging-next 2021-05-19 00:55:36 +00:00
Stéphan Kochen
7c0c956a57 starspace: fix darwin build 2021-05-18 20:35:09 +02:00
Jonathan Ringer
ca46ad3762
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  pkgs/tools/package-management/cargo-release/default.nix
 2021-05-18 11:03:38 -07:00
Pavol Rusnak
6be706bbe5
Merge pull request #123503 from stephank/fix-samblaster-darwin 
samblaster: fix darwin build
 2021-05-18 18:55:29 +02:00
Yorick van Pelt
85fce57861
picoscope: use nixpkgs mono, generated sources.json 2021-05-18 18:32:09 +02:00
Joe Hermaszewski
8c9a5a09f9
picoscope: init at 6.14.44-4r5870 
Based on https://github.com/wirew0rm/nixpkgs/tree/pkg/picoscope

Sadly it comes with its own version of mono, problems with Nixpkgs' mono
described here: https://discourse.nixos.org/t/picoscope-oscilloscope-drivers-and-mono-application/10899

Currently only 2000 series scopes have been tested.
 2021-05-18 18:32:08 +02:00
Jonathan Ringer
f7a112f6c4
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
  pkgs/applications/graphics/emulsion/default.nix
  pkgs/development/tools/misc/texlab/default.nix
  pkgs/development/tools/rust/bindgen/default.nix
  pkgs/development/tools/rust/cargo-udeps/default.nix
  pkgs/misc/emulators/ruffle/default.nix
  pkgs/tools/misc/code-minimap/default.nix
 2021-05-18 08:57:16 -07:00
Stéphan Kochen
7e9451ffb3
rink: fix darwin build (#123501) 2021-05-18 10:34:25 -04:00
Stéphan Kochen
20f36556dc samblaster: fix darwin build 2021-05-18 13:41:51 +02:00
Sandro
64b7457313
Merge pull request #123329 from evils/kicad-symlink 2021-05-18 01:40:23 +02:00
Sandro
f85bc843c2
Merge pull request #122759 from dotlambda/mono6 2021-05-18 01:25:35 +02:00
R. RyanTM
161b02937d gtkwave: 3.3.108 -> 3.3.109 2021-05-17 13:51:47 -07:00
R. RyanTM
ea5ad2b8e0 gwyddion: 2.57 -> 2.58 2021-05-17 11:49:58 -07:00
Erik Bäckman
5b143ccc91
numworks-epsilon: 15.3.2 -> 15.5.0 (#122760) 
Co-authored-by: erikbackman <erikbackman@users.noreply.github.com>
 2021-05-17 19:16:51 +02:00
Sandro
83c5d21320
Merge pull request #123083 from stephank/fix-est-sfs-darwin 
est-sfs: fix darwin build
 2021-05-17 18:58:33 +02:00
Jonathan Ringer
c227fb4b17
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/tools/rust/cargo-cache/default.nix
	pkgs/development/tools/rust/cargo-embed/default.nix
	pkgs/development/tools/rust/cargo-flash/default.nix
	pkgs/servers/nosql/influxdb2/default.nix
 2021-05-17 07:01:38 -07:00
Evils
bed2e8ef28 kicad-unstable: 2021-05-13 -> 2021-05-16 2021-05-17 09:47:28 +02:00
Evils
9f6de20292 kicad: correctly handle share/metainfo and appdata 
fixes issue 123299

blindly linking unstable's metainfo resulted in a dangling symlink
this is still share/appdata in the stable package so i linked that
 2021-05-17 09:47:07 +02:00
Stéphan Kochen
04aa238c1a gnucap: broken on darwin 
Gnucap relies on LD_LIBRARY_PATH both in its build process and in code,
which Darwin does not understand.
 2021-05-16 23:51:10 -07:00
github-actions[bot]
3ff6965554
Merge master into staging-next 2021-05-17 06:22:23 +00:00
Austin Butler
66201e2c1d cntk: fix build 2021-05-16 20:03:06 -07:00
R. RyanTM
9682a2a496 jmol: 14.31.38 -> 14.31.39 2021-05-16 19:52:36 +00:00
github-actions[bot]
6cdac75d25
Merge staging-next into staging 2021-05-16 18:32:44 +00:00
github-actions[bot]
8c6d819143
Merge master into staging-next 2021-05-16 18:32:41 +00:00
Anderson Torres
cf45c45605
Merge pull request #121588 from eduardosm/sip-rename 
pythonPackages.sip: rename to sip_4, pythonPackages.sip_5: rename to sip
 2021-05-16 13:31:55 -03:00
Jan Tojnar
684991c696
Merge branch 'master' into staging-next 
- Thunderbird 68 has been dropped on master.
- gccCrossLibcStdenv has been factored out on staging-next in all-packages.nix, while the file has been re-formatted on master.
 2021-05-16 15:34:51 +02:00
Vincenzo Mantova
4ef47f32d7 eukleides: use $CC instead of hardcoded gcc 2021-05-16 12:03:47 +01:00
Vladimír Čunát
9de0430aac
Merge #122322: eukleides: Fix build, expose tex package 2021-05-16 10:35:28 +02:00
Bjørn Forsman
3d18eddae2 pulseview: fix patch hash 2021-05-16 08:56:46 +02:00
R. RyanTM
9528bf9fd9 bowtie2: 2.4.2 -> 2.4.3 2021-05-16 02:53:03 -04:00
sophrosyne97
2558acf870 pulseview: fix build error 2021-05-16 08:50:47 +02:00
github-actions[bot]
9911b1c75b
Merge staging-next into staging 2021-05-16 01:01:01 +00:00
github-actions[bot]
b484cef365
Merge master into staging-next 2021-05-16 01:00:58 +00:00
Sandro
6b5f106b05
Merge pull request #122930 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.2 -> 4.1.3
 2021-05-15 21:32:56 +02:00