Renato Alves
459c5ec3b1
pythonPackages.pysam: Disable failing tests unrelated to packaging
...
These will be fixed upstream and are due to format changes introduced
in samtools and htslib 1.11
2020-10-30 01:28:00 +01:00
Renato Alves
0a41e3f938
pythonPackages.pysam: add libdeflate and enable tests
...
Some tests still fail due to upstream reasons so we skip those.
Note also that we are not using nix's pytestCheckHook due to
pysam detecting how it's loaded which conflicts with how
pytestCheckHook runs tests. In addition, the selection mode used
by disabledTests causes more tests than the failing ones to be
skipped, which is undesired.
See the discussion in https://github.com/NixOS/nixpkgs/pull/100823
2020-10-19 22:03:08 -07:00
R. RyanTM
970e7e15f3
python37Packages.pysam: 0.15.4 -> 0.16.0.1
2020-10-16 10:38:04 -07:00
Renato Alves
bf88bf47d1
pysam: 0.15.3 -> 0.15.4
...
Also disable tests until upstream test data issues are resolved.
See link in comment in code for more information.
2020-02-21 10:12:32 +01:00
Jonathan Ringer
5961f211f3
python.pkgs wide: fix problematic urls
2020-01-10 21:02:12 -08:00
Renato Alves
bed6814c83
pysam: 0.15.2 -> 0.15.3
2019-10-05 11:00:55 +02:00
R. RyanTM
eb6df5f186
python37Packages.pysam: 0.15.1 -> 0.15.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.7-pysam/versions
2019-01-28 20:08:47 +00:00
Orivej Desh
e78cf6ecba
python.pkgs.pysam: 0.13.0 -> 0.15.1
2018-09-21 22:48:56 +00:00
Renato Alves
37680b046c
pysam: init at 0.13.0
...
A python library to interact with SAM/BAM/CRAM files
2018-02-06 00:53:32 +01:00
