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4317 Commits

Author SHA1 Message Date
github-actions[bot]
3f38ab888e
Merge master into staging-next 2021-02-11 06:16:35 +00:00
David Anderson
6f1319a4d6 symbiyosys: fix the interpreter of the sby binary. 
Signed-off-by: David Anderson <dave@natulte.net>
 2021-02-10 18:45:44 -08:00
R. RyanTM
be145107b3 marvin: 21.1.0 -> 21.2.0 2021-02-10 14:38:25 +00:00
github-actions[bot]
bb5521a62c
Merge master into staging-next 2021-02-10 12:20:06 +00:00
Fabian Affolter
5247884859 z3: 4.8.9 -> 4.8.10 2021-02-09 12:07:38 +01:00
github-actions[bot]
30dddce5e8
Merge master into staging-next 2021-02-09 06:16:02 +00:00
Mario Rodas
f9a095da28
Merge pull request #112191 from r-ryantm/auto-update/star 
star: 2.7.6a -> 2.7.7a
 2021-02-08 20:17:49 -05:00
github-actions[bot]
1c86cb40e9
Merge master into staging-next 2021-02-08 00:36:16 +00:00
Ryan Mulligan
64c446d0ba
Merge pull request #112021 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.24.1 -> 2.24.2
 2021-02-07 14:57:32 -08:00
github-actions[bot]
194e4e6f80
Merge master into staging-next 2021-02-07 06:16:10 +00:00
Martin Weinelt
f8709117c8
Merge pull request #112107 from r-ryantm/auto-update/calc 
calc: 2.12.7.2 -> 2.12.7.6
 2021-02-07 02:58:17 +01:00
github-actions[bot]
aaaf1218bf
Merge master into staging-next 2021-02-07 00:37:36 +00:00
Sandro
6f67b153d2
Merge pull request #112196 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.0.11 -> 4.1.1
 2021-02-07 01:14:58 +01:00
Maximilian Bosch
5eae53dc5a
Merge pull request #112192 from r-ryantm/auto-update/stellarium 
stellarium: 0.20.3 -> 0.20.4
 2021-02-06 21:48:15 +01:00
Ben Wolsieffer
9a635d38b6 qgroundcontrol: 4.0.11 -> 4.1.1 2021-02-06 15:15:22 -05:00
R. RyanTM
c0df733c0b stellarium: 0.20.3 -> 0.20.4 2021-02-06 19:58:37 +00:00
R. RyanTM
ef6ed50cb4 star: 2.7.6a -> 2.7.7a 2021-02-06 19:50:22 +00:00
Orivej Desh
8d0af26e1d blast: 2.10.0 -> 2.11.0 
Fixes build with gcc10.
 2021-02-06 19:20:56 +00:00
R. RyanTM
390c686021 calc: 2.12.7.2 -> 2.12.7.6 2021-02-06 08:43:11 +00:00
R. RyanTM
0adfe0f108 picard-tools: 2.24.1 -> 2.24.2 2021-02-05 12:35:00 +00:00
Jan Tojnar
da66296930
Merge branch 'staging-next' into staging 
libkeyfinder no longer uses Qt so dontWrapQtApps is moot.
 2021-02-04 19:34:26 +01:00
Lucas Ransan
c0726b30b6
rofi-calc: 1.9 -> 2.0.0 2021-02-04 13:40:34 +01:00
github-actions[bot]
571eb10996
Merge staging-next into staging 2021-02-03 18:22:22 +00:00
Sandro
9a15b4dd19
Merge pull request #111697 from AndersonTorres/chemtool 2021-02-03 14:45:50 +01:00
github-actions[bot]
8ab0b85ead
Merge staging-next into staging 2021-02-03 12:22:13 +00:00
AndersonTorres
7e481eed2d chemtool: init at 1.6.14 2021-02-03 08:48:32 -03:00
Jarl G. Taxerås Flaten
813d14b9b7
coq: 8.13+beta1 -> 8.13.0 (#109479) 2021-02-03 08:34:47 +01:00
github-actions[bot]
d867b6f9eb
Merge staging-next into staging 2021-02-03 06:18:15 +00:00
Ryan Mulligan
e51d3443c8
Merge pull request #110971 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.30 -> 1.8.31
 2021-02-02 17:35:03 -08:00
Jan Tojnar
75153ede17
Merge branch 'staging-next' into staging 2021-02-02 19:46:31 +01:00
Sandro Jäckel
6ad10c3bcd
treewide: Remove doBuild cause it does not exist 2021-02-02 14:46:06 +01:00
github-actions[bot]
4c1eae9176
Merge staging-next into staging 2021-02-02 00:42:42 +00:00
wucke13
e4696feefc apmplanner2: 2.0.28-rc1 -> 2.0.28 2021-02-01 19:41:39 +01:00
github-actions[bot]
7044cd0c9d
Merge staging-next into staging 2021-02-01 18:31:04 +00:00
Markus Kowalewski
d23e5ca0b4
openmolcas: fix license 2021-02-01 13:28:51 +01:00
Markus Kowalewski
8d466ab26a
gpredict: fix license 2021-02-01 13:27:39 +01:00
github-actions[bot]
03b81d1bef
Merge staging-next into staging 2021-01-31 18:27:42 +00:00
Markus Kowalewski
56bf82e8a1
molden: fix outdated URLs 2021-01-31 18:08:02 +01:00
github-actions[bot]
81337921f5
Merge staging-next into staging 2021-01-31 00:46:33 +00:00
Sandro
d0dc21f539
Merge pull request #110824 from SuperSandro2000/fix-collection5 2021-01-31 00:35:55 +01:00
Daniel Schaefer
b85a0ba2c2
Merge pull request #111332 from guserav/horizon-eda 
horizon-eda: 1.3.0 -> 1.4.0
 2021-01-30 23:21:51 +01:00
Sandro Jäckel
ced3ec6ce3
treewide: update permanent url redirects 2021-01-30 21:48:57 +01:00
Mario Rodas
b695eadb47
Merge pull request #111234 from r-ryantm/auto-update/gretl 
gretl: 2020e -> 2021a
 2021-01-30 15:23:52 -05:00
Mario Rodas
540346afa4
Merge pull request #111329 from r-ryantm/auto-update/marvin 
marvin: 20.21.0 -> 21.1.0
 2021-01-30 15:14:04 -05:00
github-actions[bot]
c72ffa864a
Merge staging-next into staging 2021-01-30 18:27:30 +00:00
guserav
e8906d6b4a horizon-eda: 1.3.0 -> 1.4.0 2021-01-30 18:30:22 +01:00
R. RyanTM
19842bc24d marvin: 20.21.0 -> 21.1.0 2021-01-30 17:14:01 +00:00
Mario Rodas
6d8b2d71ba
Merge pull request #111278 from r-ryantm/auto-update/last 
last: 1170 -> 1178
 2021-01-30 10:26:15 -05:00
R. RyanTM
ad28c0fb42 last: 1170 -> 1178 2021-01-30 07:52:29 +00:00
R. RyanTM
af91d02593 gretl: 2020e -> 2021a 2021-01-30 01:29:56 +00:00
R. RyanTM
7a939f1db3 dcmtk: 3.6.5 -> 3.6.6 2021-01-29 16:43:50 +00:00
github-actions[bot]
c367646dd4
Merge staging-next into staging 2021-01-29 12:23:58 +00:00
Gabriel Ebner
b7fe801cce
Merge pull request #111117 from r-ryantm/auto-update/lean 
lean: 3.25.0 -> 3.26.0
 2021-01-29 11:04:43 +01:00
github-actions[bot]
4c82d7eb24
Merge staging-next into staging 2021-01-29 06:19:21 +00:00
R. RyanTM
fe1239c794 lean: 3.25.0 -> 3.26.0 2021-01-29 05:15:16 +00:00
Sandro
d17f76f05a
Merge pull request #108172 from sikmir/geogebra 
geogebra: 5-0-609-0 → 5-0-620-0, geogebra6: 6-0-609-0 → 6-0-620-0
 2021-01-29 02:19:06 +01:00
github-actions[bot]
798f7b136c
Merge staging-next into staging 2021-01-28 18:30:08 +00:00
Sandro
e368149fcd
Merge pull request #111003 from NieDzejkob/isabelle-vampire 
isabelle: provide perl LWP for remote_vampire
 2021-01-28 18:32:27 +01:00
Jakub Kądziołka
df410f8de7
isabelle: provide perl LWP for remote_vampire 2021-01-28 11:05:39 +01:00
R. RyanTM
abd5395184 mavproxy: 1.8.30 -> 1.8.31 2021-01-28 00:24:12 +00:00
github-actions[bot]
06efb52369
Merge staging-next into staging 2021-01-27 18:28:34 +00:00
Roland Coeurjoly
cbad557fe2
saw-tools: update license (#110920) 2021-01-27 17:52:41 +01:00
Ben Siraphob
82454e9df8 treewide: remove implicit use of stdenv.lib 2021-01-27 20:04:57 +07:00
github-actions[bot]
1b5da764a7
Merge staging-next into staging 2021-01-27 12:24:09 +00:00
Sandro
ad97ca4e51
Merge pull request #110912 from siraben/stdenv-lib-inherit 
treewide: remove inherited stdenv.lib
 2021-01-27 10:28:55 +01:00
Ben Siraphob
3bbad8b041 treewide: remove inherited stdenv.lib 2021-01-27 12:44:43 +07:00
Thomas Tuegel
0e418a1a18
Merge pull request #108888 from ttuegel/feature--staging--qt-no-mkDerivation 
Qt: Do not require mkDerivation
 2021-01-26 16:24:41 -06:00
Phillip Cloud
bba47f95f1 sortmerna: mark broken on darwin 2021-01-26 12:55:33 -05:00
Thomas Tuegel
5590e365e4
qtbase: Check for wrapQtAppsHook in setupHook 2021-01-25 15:56:15 -06:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed 2021-01-25 18:31:47 +01:00
Sandro
ad445d3728
Merge pull request #110735 from jbedo/bedtools 
bedtools: 2.29.2 -> 2.30.0
 2021-01-25 11:04:30 +01:00
Ryan Mulligan
afebf1cc9a
Merge pull request #110529 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.24.0 -> 2.24.1
 2021-01-24 18:06:28 -08:00
Justin Bedo
d81e79af15
bedtools: 2.29.2 -> 2.30.0 2021-01-25 13:06:22 +11:00
Sandro
a36bf6faf9
Merge pull request #101796 from luc65r/pkg/tilp2 2021-01-25 01:11:50 +01:00
Mario Rodas
214d726b92
Merge pull request #110487 from r-ryantm/auto-update/lean 
lean: 3.24.0 -> 3.25.0
 2021-01-24 10:17:35 -05:00
luc65r
3c5f402e6e
tilp2: init at 1.18 2021-01-24 14:06:41 +01:00
luc65r
99d0610e03
gfm: init at 1.08 2021-01-24 14:06:41 +01:00
volth
bc0d605cf1 treewide: fix double quoted strings in meta.description 
Signed-off-by: Ben Siraphob <bensiraphob@gmail.com>
 2021-01-24 19:56:59 +07:00
Pavol Rusnak
90f7338112
treewide: stdenv.lib -> lib 2021-01-24 01:49:49 +01:00
Markus Kowalewski
6dba41fbcb
mpi: use mpi attribute consistently as the default MPI implementations 
Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
 {
   mpi = super.mpich;
 }

All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
 2021-01-23 12:15:13 +01:00
R. RyanTM
e1ea0a237a picard-tools: 2.24.0 -> 2.24.1 2021-01-22 19:10:27 +00:00
R. RyanTM
0119128f9e lean: 3.24.0 -> 3.25.0 2021-01-22 14:11:46 +00:00
sternenseemann
9212e03c13 acgtk: use dune install 2021-01-21 11:26:26 +01:00
Ryan Mulligan
33784b7228
Merge pull request #110086 from r-ryantm/auto-update/marvin 
marvin: 20.20.0 -> 20.21.0
 2021-01-20 23:38:00 -08:00
zowoq
932941b79c treewide: editorconfig fixes 
- remove trailing whitespace
- use spaces for indentation
 2021-01-21 13:29:54 +10:00
R. RyanTM
427bbe059a picard-tools: 2.23.9 -> 2.24.0 2021-01-20 20:42:01 +00:00
R. RyanTM
26dba9209f marvin: 20.20.0 -> 20.21.0 2021-01-20 05:27:37 +00:00
zowoq
759a2cd563 ecopcr: use spaces for indentation 2021-01-20 10:53:10 +10:00
zowoq
31f5dd3f36 treewide: editorconfig fixes 
- remove trailing whitespace
- use spaces for indentation
 2021-01-20 09:11:11 +10:00
R. RyanTM
5eeafdb3ad kstars: 3.5.0 -> 3.5.1 2021-01-19 18:56:23 +00:00
Jonathan Ringer
9bb3fccb5b treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 
continuation of #109595

pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.

python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
 2021-01-19 01:16:25 -08:00
Jonathan Ringer
200bb8c977 cd-hit: remove non-existent package 2021-01-19 01:16:25 -08:00
Sandro
ed2dbbba22
Merge pull request #109771 from r-ryantm/auto-update/delly 
delly: 0.8.6 -> 0.8.7
 2021-01-18 17:36:01 +01:00
R. RyanTM
e776f923e4 elan: 0.10.2 -> 0.10.3 2021-01-18 15:20:28 +00:00
R. RyanTM
a0e1bb6a4b delly: 0.8.6 -> 0.8.7 2021-01-18 14:22:30 +00:00
Sandro
0b6f223eec
Merge pull request #104756 from Mazurel/qucs-s 
qucs-s: init at 0.0.22
 2021-01-18 01:30:34 +01:00
Sandro
fe2882e5d3
Merge pull request #107845 from danielbarter/openbabel3 2021-01-18 00:37:32 +01:00
Sandro Jäckel
197eace081
avogadro: update maintainers 2021-01-18 00:21:49 +01:00
Mauricio Scheffer
f8b69fa6d2 starspace: init at unstable-2021-01-17 2021-01-17 21:31:55 +00:00
Ben Siraphob
badf51221d treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
yangm2
c7ebdc8123
verilator: 4.100 -> 4.108 
Co-authored-by: Austin Seipp <aseipp@pobox.com>
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-01-15 21:10:37 -06:00
CRTified
f8c06505db aliza: 1.98.32 -> 1.98.43 2021-01-15 21:30:55 +01:00
Sandro
403ea9f27c
Merge pull request #97101 from fricklerhandwerk/wxpython 2021-01-15 10:30:05 +01:00
Michael Raskin
d714c53f17
fix mis-merge 2021-01-14 15:26:10 +00:00
Michael Raskin
f2210b7287
Merge branch 'master' into remove-opensmt 2021-01-14 14:22:22 +00:00
fricklerhandwerk
bb2879d593 mavproxy: fix darwin build 2021-01-14 09:26:12 +01:00
Sandro Jäckel
55444ed07f
nasc: Fix compilation with gcc10 2021-01-11 12:08:20 +01:00
Profpatsch
4a7f99d55d treewide: with stdenv.lib; in meta -> with lib; 
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
 2021-01-11 10:38:22 +01:00
Jan Tojnar
dd72357155
Merge branch 'master' into staging-next 2021-01-10 23:24:33 +01:00
John Ericson
05b5b5491e
Merge pull request #108507 from Ericson2314/ott-mode 
ott-mode: Factor our from ott
 2021-01-10 14:30:59 -05:00
Nikolay Korotkiy
c0575fe0ef
geogebra: 5-0-609-0 → 5-0-620-0, geogebra6: 6-0-609-0 → 6-0-620-0 2021-01-10 20:19:43 +03:00
github-actions[bot]
433c7b069c
Merge master into staging-next 2021-01-10 01:03:35 +00:00
Markus Kowalewski
14caa4b2bf
octopus: 10.0 -> 10.3 2021-01-09 16:32:49 +01:00
Markus Kowalewski
0961d5b998
octopus: update licenses 2021-01-09 16:32:49 +01:00
Michael Weiss
8ae8602bf7
Merge branch 'master' into staging-next 
Manually resolved a conflict in
pkgs/development/libraries/libbladeRF/default.nix.
 2021-01-09 12:16:11 +01:00
Cyril Cohen
9ffd16b385 coqPackages: refactor 2021-01-09 11:56:17 +01:00
github-actions[bot]
ecebf82121
Merge master into staging-next 2021-01-08 12:29:36 +00:00
Gabriel Ebner
5000e5707b
Merge pull request #108717 from Dyazz/libqalculate 
libqalculate: 3.14.0 -> 3.16.0
 2021-01-08 11:23:31 +01:00
Dyazz
8cdefb6995 qalculate-gtk: 3.15.0 -> 3.16.0 2021-01-08 08:43:39 +01:00
Jan Tojnar
e6c0c98940
Merge branch 'master' into staging-next 
zynaddsubfx conflict has been updated to 3.0.1, which conflicted with rewrite after 3.0.5 update on a different branch.
 2021-01-08 02:07:34 +01:00
Evils
0448f1c082 kicad-unstable: 2020-12-01 -> 2020-12-23 2021-01-07 16:17:41 -05:00
Evils
9be551c1d8 kicad: 5.1.8 -> 5.1.9 2021-01-07 16:17:41 -05:00
Evils
86e29a0b72 kicad: fix update.sh multiple tag reply handling 
and fix tabs in update.sh
 2021-01-07 16:17:41 -05:00
Sandro
7ae17783a7
Merge pull request #108432 from jbedo/fastp 
fastp: init 0.20.1
 2021-01-07 21:44:33 +01:00
github-actions[bot]
5c072a088d
Merge master into staging-next 2021-01-07 18:40:50 +00:00
Sandro
ec56bf6ede
Merge pull request #106456 from eduardosm/diylc 2021-01-07 17:24:42 +01:00
Jan Tojnar
f19eb635b4
Merge branch 'master' into staging-next 
b04fc593e7 seems to have accidentally changed mkDerivation function for dfilemanager and solarus-quest-editor so I have reverted that here.
 2021-01-07 13:04:31 +01:00
Eduardo Sánchez Muñoz
0d84b3f540 diylc: init at 4.15.1 2021-01-07 12:53:35 +01:00
Justin Bedo
bdf3d727ca
fastp: init 0.20.1 2021-01-07 18:24:19 +11:00
Devon Richards
7a16349789
lean: 3.23.0 -> 3.24.0 
We have to update to be able to use the current version of mathlib.
 2021-01-06 21:38:04 -06:00
Сухарик
4746e1717f
sympy: 1.6.2 -> 1.7.1 (#107663) 
* sympy: 1.6.2 -> 1.7.1

* sage: adapt tests to sympy 1.7

Co-authored-by: Mauricio Collares <mauricio@collares.org>
 2021-01-06 17:10:30 +00:00
Sandro
0af4d59732
Merge pull request #108437 from jbedo/varscan 
varscan: 2.4.2 -> 2.4.4
 2021-01-06 00:19:30 +01:00
Sandro
31d6b1cd06
Merge pull request #108435 from jbedo/last 
last: 1145 -> 1170
 2021-01-06 00:18:41 +01:00
Guillaume Girol
f3e84c4d42
Merge pull request #107416 from hjones2199/phd2wrap 
phd2: add GApps wrapper to fix breakage on non-nixos wayland systems
 2021-01-05 20:09:24 +00:00
John Ericson
4eb13669a0 ott: Don't also install emacs mode 
There is now a separate package for that.
 2021-01-05 14:41:52 -05:00
Anderson Torres
0972bbc12d
Merge pull request #108445 from AndersonTorres/updates 
Misc updates
 2021-01-05 11:54:15 -03:00
AndersonTorres
e8183d4687 magic-vlsi: 8.3.80 -> 8.3.109 
Also, add myself to maintainers list.
 2021-01-05 10:49:00 -03:00
Sandro
f53c431645
Merge pull request #108379 from SuperSandro2000/cleanups 2021-01-05 02:19:24 +01:00
Justin Bedo
56dd3fa172
varscan: 2.4.2 -> 2.4.4 2021-01-05 10:55:28 +11:00
Justin Bedo
62432c855f
last: 1145 -> 1170 2021-01-05 10:29:31 +11:00
Frederik Rietdijk
b20838eb4a Merge staging-next into staging 2021-01-04 20:51:32 +01:00
Pavol Rusnak
bf77245202
Merge pull request #108219 from prusnak/viennarna 
ViennaRNA: init at 2.4.17
 2021-01-04 18:04:56 +01:00
markuskowa
d480c86858
Merge pull request #107223 from markuskowa/upd-qe 
quantum-espresso: 6.5 -> 6.6
 2021-01-04 14:33:37 +01:00
Sandro
6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36 2021-01-04 14:25:21 +01:00
Sandro Jäckel
a8d360eca3
raxml: cleanup 2021-01-04 11:02:16 +01:00
github-actions[bot]
07165c7226
Merge staging-next into staging 2021-01-03 18:38:32 +00:00
John Ericson
b03fdcc7f9
Merge pull request #108300 from siraben/parallel-cmake 
treewide: remove enableParallelBuilding = true if using cmake
 2021-01-03 13:22:09 -05:00
Pavol Rusnak
77364ac7c0
Merge pull request #108251 from prusnak/bowtie2 
bowtie2: 2.3.5.1 -> 2.4.2
 2021-01-03 13:47:45 +01:00
github-actions[bot]
0649757570
Merge staging-next into staging 2021-01-03 12:24:59 +00:00
Ben Siraphob
3ae5e6ce03 treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00