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2685 Commits

Author SHA1 Message Date
Millian Poquet
13aa449bab simgrid: remove unneeded 'name' definition 2019-05-15 12:35:12 +02:00
Millian Poquet
00fc5bd08f simgrid: override checkPhase -> preCheck 
This commit changes how failing tests are ignored.
- Previously, the whole checkPhase was overridden.
- Now, preCheck generates a ctest ignore file.

ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest
 2019-05-14 18:27:51 +02:00
Millian Poquet
aa29b79e8a simgrid: fetchgit -> fetchFromGitLab 2019-05-13 21:26:09 +02:00
Millian Poquet
c7ab2b9499 simgrid: 3.21 -> 3.22.2 
- GitHub -> Framagit (SimGrid main repo has moved)
- Test binaries must now be explicitly compiled (`make tests`)
- Fix broken documentation link
 2019-05-13 18:58:27 +02:00
R. RyanTM
af6a39460a cbc: 2.9.9 -> 2.10.2 (#58016) 
* cbc: 2.9.9 -> 2.10.0
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cbc/versions

* cbc: 2.10.0 -> 2.10.2
+ mark as broken on aarch64 (fails to build)
 2019-05-12 23:46:18 +02:00
Sebastien Bourdeauducq
992150d37b symbiyosys: fix path to bash 2019-05-12 20:00:10 +02:00
Renaud
d081baa4a5
Merge pull request #61335 from r-ryantm/auto-update/minimap2 
minimap2: 2.16 -> 2.17
 2019-05-12 17:27:28 +02:00
R. RyanTM
ad5676f8b9 minimap2: 2.16 -> 2.17 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/minimap2/versions
 2019-05-11 21:12:42 -07:00
wucke13
a670a8dbb1 apmplanner-2: 2.0.26 -> 2.0.27-rc1 2019-05-11 19:15:10 +02:00
Timo Kaufmann
3814d7b14a
givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 (#61285) 
The three packages are interdependent and need to be updated together,
like the main contributor did for sage:

https://trac.sagemath.org/ticket/24214
 2019-05-11 16:09:07 +02:00
Michael Raskin
7252364dfa tptp: switch to new base URL for source tarball 2019-05-09 22:57:59 +02:00
Michael Raskin
a8c4b37063 vampire: switch off the fragile fetchSubmodules/leaveDotGit 2019-05-09 22:57:59 +02:00
Renaud
2fb1b3156f
Merge pull request #60932 from c0bw3b/patches-cleanup 
[treewide] delete (some) unused patches
 2019-05-07 23:34:04 +02:00
Frederik Rietdijk
a80982b4c9
Merge staging-next into master 2019-05-07 19:29:06 +02:00
Frederik Rietdijk
0196d8f11c Merge master into staging-next 2019-05-07 09:00:06 +02:00
Mario Rodas
e47dd1bb34
cedille: fix hash 2019-05-05 20:47:29 -05:00
Michael Raskin
7770495cd7
Merge pull request #59148 from volth/gcc.arch.v3 
compilation for particular x86_64 architecture
 2019-05-05 19:12:12 +00:00
Daniël de Kok
f029f8c5ad fasttext: init at 0.2.0 2019-05-05 08:28:44 +02:00
c0bw3b
9cb260d091 [treewide] delete unused patches 2019-05-04 19:52:24 +02:00
Frederik Rietdijk
155c9d8e18 Merge master into staging-next 2019-05-02 08:43:14 +02:00
Renaud
2f76c9b7e8
Merge pull request #60694 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.19.0 -> 2.19.2
 2019-05-02 08:06:35 +02:00
R. RyanTM
d41da19c65 picard-tools: 2.19.0 -> 2.19.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-05-01 17:49:08 -07:00
Gabriel Ebner
ebbeae56bd
kicad: 5.0.2 -> 5.1.2 (#60611) 
kicad: 5.0.2 -> 5.1.2
 2019-05-01 12:21:02 +02:00
Frederik Rietdijk
f137783927 Merge master into staging-next 2019-05-01 11:45:46 +02:00
R. RyanTM
cc82f81d9a bowtie2: 2.3.5 -> 2.3.5.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions
 2019-05-01 11:17:16 +02:00
R. RyanTM
dbfdaf048a gromacs: 2019.1 -> 2019.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
 2019-05-01 11:14:16 +02:00
Gabriel Ebner
9370c1afdb kicad: 5.0.2 -> 5.1.2 2019-05-01 11:13:14 +02:00
R. RyanTM
06aa3d6f60 jmol: 14.29.36 -> 14.29.40 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-05-01 11:10:18 +02:00
Gabriel Ebner
e62576817f Merge branch 'auto-update/libqalculate' 2019-05-01 10:28:38 +02:00
Gabriel Ebner
1d5a0ffbfc qalculate-gtk: 3.0.0 -> 3.1.0 2019-05-01 10:28:04 +02:00
Ryan Mulligan
14965968bd
Merge pull request #60550 from r-ryantm/auto-update/ginac 
ginac: 1.7.5 -> 1.7.6
 2019-04-30 19:27:22 -07:00
R. RyanTM
1d663a6b2e ginac: 1.7.5 -> 1.7.6 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
 2019-04-30 15:56:23 -07:00
Michael Raskin
9d807a768a
Merge pull request #60520 from r-ryantm/auto-update/eprover 
eprover: 2.2 -> 2.3
 2019-04-30 19:16:59 +00:00
R. RyanTM
62cd9ccca4 eprover: 2.2 -> 2.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eprover/versions
 2019-04-30 10:05:27 -07:00
Gabriel Ebner
a35df16d5f
kicad: fix #49089 by adding libraries files (#57452) 
kicad: fix #49089 by adding libraries files
 2019-04-30 17:38:16 +02:00
volth
5ad79dc4bb compilation for particular x86_64 architecture 2019-04-30 14:28:04 +00:00
Matthew Bauer
a3990c9f6d
Merge pull request #60447 from matthewbauer/macos-10-12-fixups 
Fixup from macos-10-12 branch
 2019-04-30 10:06:45 -04:00
Frederik Rietdijk
3462fe27d9 Merge staging-next into staging 2019-04-30 15:52:19 +02:00
Matthew Bauer
74c784a79c treewide: make -Wno-error flags clang-only 
In 724e833ea2, I was a little too aggressive in enabling these flags.
Many don’t work in gcc, and we should probably avoid settings them
widely. This makes those flags optional on isclang
 2019-04-29 21:34:24 -04:00
Mario Rodas
7a965dcdab cedille: 1.0.0 -> 1.1.1 (#60307) 2019-04-29 21:02:44 +02:00
Timo Kaufmann
6dabc28cd0 sage: add compatibility for R 3.6.0 
The random number generator seems to have changed. Because of this, a
trivial test adjustment is needed.
 2019-04-29 13:37:07 +02:00
Alex Branham
4264ad4c2b R: 3.5.3 -> 3.6.0 
The patch is necessary for the test suite to pass without errors. The
fix has already been made upstream but didn't make it into the 3.6.0
release.

Closes https://github.com/NixOS/nixpkgs/pull/60273.
 2019-04-29 13:35:21 +02:00
Bruno Bzeznik
83886b3d91 aragorn: init at 1.2.38 (#58354) 2019-04-29 07:18:03 -04:00
Ben
535c38dd73 GeoGebra: 472 -> 535 (#60272) 
* Update GeoGebra

* Update default.nix
 2019-04-29 11:25:37 +02:00
Timo Kaufmann
31709b611f R: add timokau as a maintainer 
I'm interested in R as a dependency for sage. R changes are likely to
impact sage, so I'd like to get notified on those changes.
 2019-04-28 13:20:47 +02:00
Matthew Bauer
87944c3125
Merge pull request #56744 from matthewbauer/macos-10-12 
Update macOS to 10.12
 2019-04-26 22:20:03 -04:00
Matthew Bauer
724e833ea2 treewide: disable -Werror for llvm 7 
Some of these have errors on newest llvm. It’s easiest to just add
-Wno-error in these cases.
 2019-04-26 21:55:04 -04:00
Renaud
5560607988
Merge pull request #59484 from r-ryantm/auto-update/eagle 
eagle: 9.3.1 -> 9.3.2
 2019-04-25 23:32:25 +02:00
Renaud
71c6157fd7
Merge pull request #58534 from bzizou/sumatools.dev 
sumatools: init at 1.0.34
 2019-04-24 22:34:35 +02:00
Renaud
9f26d537e8
Merge pull request #59516 from r-ryantm/auto-update/gmsh 
gmsh: 4.2.2 -> 4.2.3
 2019-04-24 20:40:56 +02:00