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5878 Commits

Author SHA1 Message Date
Frederik Rietdijk
568c58e811 python: llfuse: 1.3.4 -> 1.3.5 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
a77e19790a python: ledgerblue: 0.1.19 -> 0.1.20 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
f3b67b35c1 python: Keras_Preprocessing: 1.0.3 -> 1.0.5 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
0579e63ad9 python: Keras_Applications: 1.0.5 -> 1.0.6 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
f6ac7c183d python: Keras: 2.2.2 -> 2.2.4 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
c4e56035eb python: jupyterlab: 0.34.6 -> 0.34.12 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
6e5561b2fa python: jdatetime: 3.0.0 -> 3.0.2 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
56db8abfb2 python: ipywidgets: 7.4.0 -> 7.4.2 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
ed4231d2fa python: inflect: 1.0.0 -> 1.0.1 2018-10-13 09:50:16 +02:00
Frederik Rietdijk
2237055688 python: identify: 1.1.4 -> 1.1.7 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
fe239dddcb python: hvac: 0.6.3 -> 0.6.4 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
c65161878e python: hupper: 1.3 -> 1.3.1 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
98c03124fd python: hdbscan: 0.8.15 -> 0.8.18 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
1d85fc11a4 python: grpcio-tools: 1.14.1 -> 1.14.2 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
e7324a07eb python: greenlet: 0.4.14 -> 0.4.15 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
f1300daa92 python: graphite-web: 1.1.3 -> 1.1.4 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
ab635c1ff5 python: GPy: 1.9.2 -> 1.9.5 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
08389e35ce python: gpapi: 0.4.2 -> 0.4.3 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
9cef968a39 python: genanki: 0.6.0 -> 0.6.3 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
3fb78d42e2 python: fonttools: 3.29.0 -> 3.29.1 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
07a3f3fbb7 python: Flask-AutoIndex: 0.6.1 -> 0.6.2 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
f23d6af608 python: filelock: 3.0.6 -> 3.0.9 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
40446b216a python: Eve: 0.8 -> 0.8.1 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
ec0d777dab python: emoji: 0.5.0 -> 0.5.1 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
0d11570e78 python: dominate: 2.3.1 -> 2.3.4 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
e8783b8284 python: distributed: 1.23.1 -> 1.23.3 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
83d47c548c python: deprecation: 2.0.5 -> 2.0.6 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
81298e4477 python: dask-image: 0.1.1 -> 0.1.2 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
094ea76f29 python: cvxopt: 1.2.0 -> 1.2.1 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
ed721f8edb python: cupy: 4.4.0 -> 4.4.1 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
7977097a39 python: cloudpickle: 0.5.5 -> 0.5.6 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
74b8eb5452 python: click-plugins: 1.0.3 -> 1.0.4 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
44c13b1400 python: carbon: 1.1.3 -> 1.1.4 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
1c28b76887 python: bumps: 0.7.10 -> 0.7.11 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
96c30ae57c python: zc.buildout: 2.12.1 -> 2.12.2 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
81ba7e844b python: zc.buildout: 2.12.1 -> 2.12.2 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
5b91e4abf8 python: beancount: 2.1.2 -> 2.1.3 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
7e3a047cb8 python: autobahn: 18.8.1 -> 18.8.2 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
c26359c1eb python: alabaster: 0.7.11 -> 0.7.12 2018-10-13 09:50:15 +02:00
Frederik Rietdijk
4b12cfb92e python: Theano: 1.0.2 -> 1.0.3 2018-10-13 09:50:15 +02:00
Christopher Ostrouchov
adbdba25d0 pythonPackages.tinycss: 0.3 -> 0.4 refactor move to python-modules (#48163) 2018-10-13 00:16:47 +02:00
Silvan Mosberger
c26d6001ed
Merge pull request #45890 from lopsided98/buildbot-python3 
buildbot: Python 3 support and other improvements
 2018-10-12 14:06:41 +02:00
Sarah Brofeldt
32bcd72bf2
Merge pull request #48198 from teto/rfc-bibtex 
rfc-bibtex: init at 2.2.1
 2018-10-12 10:07:10 +02:00
Benjamin Hipple
c0af13f1c8 python: update documentation 
This touches up a handful of places in the python documentation to try to make
the current best-practices more obvious. In particular, I often find the
function signatures (what to pass, what not to pass) confusing and have added
them to the docs.

Also updated the metas to be more consistent with the most frequently used
modern style.
 2018-10-12 10:06:25 +02:00
Sarah Brofeldt
9cba2f54fa
Merge pull request #48079 from lopsided98/python-av-update 
pythonPackages.av: 0.4.1 -> 0.5.3
 2018-10-12 10:03:19 +02:00
lewo
68e1e0e5fe
Merge pull request #48133 from bhipple/add/atom 
pythonPackages.atom: init at 0.4.1
 2018-10-12 08:39:09 +02:00
Ben Wolsieffer
73c523a605 buildbot: add Python 3 support 2018-10-11 21:39:11 -04:00
Ben Wolsieffer
5b2a1db2e3 pythonPackages.sqlalchemy_migrate: patch backslash escapes 2018-10-11 18:15:16 -04:00
Ben Wolsieffer
1c3f7302fa pythonPackages.autobahn: use checkInputs 2018-10-11 18:15:16 -04:00
Ben Wolsieffer
820feccb18 pythonPackages.trollius: 1.0.4 -> 2.2 2018-10-11 18:15:16 -04:00
Ben Wolsieffer
fcaae4fc35 pythonPackages.hyperlink: don't create .pytest_cache 2018-10-11 18:15:16 -04:00
Ben Wolsieffer
67ea56717a python2Packages.pylint: init at 1.9.2 2018-10-11 18:15:15 -04:00
Ben Wolsieffer
4f09e05849 python2Packages.astroid: init at 1.6.5 2018-10-11 18:15:15 -04:00
Ben Wolsieffer
511d651e58 pythonPackages.tempita: 0.5.2 -> 0.5.3-2016-09-28 2018-10-11 18:14:36 -04:00
Ben Wolsieffer
225b8de73d pythonPackages.sphinx-jinja: 0.2.1 -> 1.1.0, Python 3 support 2018-10-11 18:13:54 -04:00
Silvan Mosberger
c166d05025
Merge pull request #48192 from costrouc/costrouc/python-filterpy 
pythonPackages.filterpy: init at 1.4.5
 2018-10-11 22:41:36 +02:00
Chris Ostrouchov
9fc4f06810
pythonPackages.filterpy: init at 1.4.5 2018-10-11 15:37:27 -04:00
Jörg Thalheim
af35bf90ed
Merge pull request #48165 from costrouc/costrouc/python-escapism-1.0.0 
pythonPackages.escapism: 0.0.1 -> 1.0.0 move to python-modules
 2018-10-11 17:11:38 +01:00
xeji
058665560e
Merge pull request #48152 from pandaman64/upgrade-qiskit 
qiskit: 0.5.7 -> 0.6.1
 2018-10-11 12:09:36 +02:00
Matthieu Coudron
714c0781c3 rfc-bibtex: init at 2.2.1 
Generate bibtex entries from IETF rfc/drafts, for instance:
$ rfcbibtex RFC5246 draft-ietf-tls-tls13-21

@techreport{RFC5246,
  author = {T. Dierks and E. Rescorla},
  title = {{The Transport Layer Security (TLS) Protocol Version 1.2}},
  howpublished = {Internet Requests for Comments},
  type = {RFC},
  number = {5246},
  year = {2008},
  month = {August},
  issn = {2070-1721},
  publisher = {RFC Editor},
  institution = {RFC Editor},
  url = {http://www.rfc-editor.org/rfc/rfc5246.txt},
  note = {\url{http://www.rfc-editor.org/rfc/rfc5246.txt}},
}

@techreport{I-D.ietf-tls-tls13,
  author = {Eric Rescorla},
  title = {{The Transport Layer Security (TLS) Protocol Version 1.3}},
  howpublished = {Working Draft},
  type = {Internet-Draft},
  number = {draft-ietf-tls-tls13-21},
  year = {2017},
  month = {July},
  institution = {IETF Secretariat},
  url = {http://www.ietf.org/internet-drafts/draft-ietf-tls-tls13-21.txt},
  note = {\url{http://www.ietf.org/internet-drafts/draft-ietf-tls-tls13-21.txt}},
}
 2018-10-11 16:17:40 +09:00
pandaman64
355fa854f7 qasm2image: 0.7.0 -> 0.8.0 2018-10-11 11:46:07 +09:00
pandaman64
c7ac364278 qiskit: 0.5.7 -> 0.6.1 2018-10-11 11:46:07 +09:00
Jörg Thalheim
726b4da189
Merge pull request #48166 from costrouc/costrouc/python-facebook-sdk 
pythonPackages.facebook-sdk: 0.3.0 -> 3.0.0 refactor move to python-modules
 2018-10-11 01:13:49 +01:00
Chris Ostrouchov
de2a995c83
pythonPackages.facebook-sdk: 0.3.0 -> 3.0.0 refactor move to python-modules 2018-10-10 13:32:38 -04:00
Chris Ostrouchov
61c83b108d
pythonPackages.escapism: 0.0.1 -> 1.0.0 move to python-modules 2018-10-10 13:10:47 -04:00
pandaman64
11c17034b6 ibmquantumexperience: 2.0.2 -> 2.0.3 2018-10-10 20:02:18 +09:00
Benjamin Hipple
b721a1b9a9 pytest: add license 2018-10-09 21:23:37 -04:00
Benjamin Hipple
cd1f5914bd pythonPackages.atom: init at 0.4.1 2018-10-09 21:02:27 -04:00
Matthew Bauer
9b0505abb7
Merge pull request #46898 from Assassinkin/osmnx 
pythonPackages.osmnx: init at 0.8.2
 2018-10-09 12:11:27 -05:00
Ben Wolsieffer
5352cb3748 pythonPackages.av: 0.4.1 -> 0.5.3 2018-10-08 17:01:12 -04:00
Philipp Middendorf
d2608d29a2 black: 18.6b4 -> 18.9b0 (#47914) 2018-10-06 15:19:38 +02:00
Jörg Thalheim
a363ed1071
Merge pull request #47832 from veprbl/pr/arrow_0.10.0 
arrow-cpp: 0.9.0 -> 0.10.0
 2018-10-04 23:34:17 +01:00
Philipp Middendorf
98238e58c8 yapf: 0.22.0 -> 0.24.0 2018-10-04 10:34:55 +02:00
Dmitry Kalinkin
3942226053 arrow-cpp: 0.9.0 -> 0.10.0 
pythonPackages.pyarrow: 0.9.0 -> 0.10.0
parquet: 1.4.0 -> 1.5.0
 2018-10-03 21:43:48 -04:00
Frederik Rietdijk
4d1abc4419
Merge pull request #47604 from NixOS/staging-next 
Staging next
 2018-10-02 18:22:18 +02:00
catern
9ac7893042 pythonPackages.trio: 0.6.0 -> 0.7.0 (#47638) 2018-10-02 12:52:58 +02:00
Roman Volosatovs
2ada8f78d0 simple-websocket-server: Init at 20180414 (#47567) 2018-10-02 00:40:10 +02:00
Paul TREHIOU
483e2a1a6b btchip: init at 0.1.28 
electrum and electron-cash: add support for btchip library (#40816)
 2018-10-01 18:13:03 -04:00
Lancelot SIX
5aa66991a6 pythonPackages.django-raster: Improve django version support (#47484) 2018-10-01 22:02:11 +02:00
Daiderd Jordan
1383c08f2c
Merge branch 'master' into staging-next 2018-10-01 19:42:07 +02:00
Josef Kemetmüller
49dcf7be62 pythonPackages.py-cpuinfo: Fix darwin build (#47558) 2018-09-30 21:19:05 +02:00
volth
0a784c094f libvirt: 4.5.0 -> 4.7.0 (#46502) 2018-09-29 22:33:38 +02:00
Florian Klink
2be514d5c3 pythonPackages.pystemd: init at 0.5.0 (#47517) 2018-09-29 21:25:08 +02:00
Michael Weiss
2df4b3e6eb pythonPackages.glances: Enable the tests (skip the failing ones) 2018-09-29 20:47:05 +02:00
Matthew Bauer
228d6f5068
Merge pull request #46007 from markuskowa/openmpi-up 
openmpi: 3.1.0->3.1.2
 2018-09-29 13:24:46 -05:00
Michael Weiss
a108b8617b pythonPackages.glances: 3.0.1 -> 3.0.2 2018-09-29 11:38:12 +02:00
Lancelot SIX
a006e2fd7c pythonPackages.django_2_1: 2.1 -> 2.1.1 (#47481) 
See https://docs.djangoproject.com/en/2.1/releases/2.1.1/ for release
notes
 2018-09-28 20:13:29 +02:00
Lancelot SIX
eabaf4e30a
Merge pull request #47460 from Gerschtli/add/flask-jwt-extended 
pythonPackages.flask-jwt-extended: init at 3.13.1
 2018-09-28 16:19:05 +02:00
Tobias Happ
f14d4ba112 pythonPackages.flask_sqlalchemy: 2.1 -> 2.3.2 2018-09-28 11:55:36 +02:00
Tobias Happ
50636fda52 pythonPackages.flask-jwt-extended: init at 3.13.1 2018-09-28 11:54:06 +02:00
Samuel Leathers
2d15180ea2
Merge pull request #47420 from va1entin/pynacl-130 
pythonPackages.pynacl: 1.2.1 -> 1.3.0
 2018-09-27 13:42:34 -04:00
Valentin Heidelberger
d0199179ba pythonPackages.pynacl: 1.2.1 -> 1.3.0 2018-09-27 13:26:26 +02:00
Markus Kowalewski
676825f6fe
mpi4py: Add patch to skip broken tests. 
Fixes compilation with openmpi-3.1.2
 2018-09-26 23:39:18 +02:00
Markus Kowalewski
be02ab2f30
openmpi: 3.1.0 -> 3.1.2 2018-09-26 23:38:55 +02:00
aszlig
65d0b082f3
Merge Paperwork update to version 1.2.4 (#46487) 
Thanks to @symphorien for this work, which apart from the update itself
includes a few more fixes and cleanups.

I've tested building and running the upgraded Paperwork and while I
haven't done extensive testing on every little feature it seems to work
so far.

The changes also include an addition to fetchFromGitLab, which allows to
specify a group.

Merges: #46487
 2018-09-25 23:13:08 +02:00
Igor Tarasov
292bb74552 python.pkgs.grpcio: 1.14.1 -> 1.15.0 2018-09-25 19:06:07 +00:00
John Ericson
8cbf56058a
Merge pull request #47355 from obsidiansystems/numpy-fortran 
numpy, scipy: Fix some nativeBuildInputs
 2018-09-25 14:45:40 -04:00
Dylan Simon
c77e8096ee python.pkgs.cheroot: fix setup patch URL (#47320) (#47354) 
Fix to specific patch revision rather than latest
 2018-09-25 20:20:57 +02:00
John Ericson
c701d6cb21 Merge remote-tracking branch 'upstream/master' into staging 2018-09-25 14:20:27 -04:00
John Ericson
84fc814982 scipy: gfortran should be in nativeBuildInputs 2018-09-25 14:08:41 -04:00
John Ericson
cfbfb9440c numpy: gfortran and pytest should be nativeBuildInputs 2018-09-25 14:03:30 -04:00
Jörg Thalheim
725b57ba11
Merge pull request #47283 from flokli/elasticsearch-dsl-6.2.1 
pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1
 2018-09-24 20:40:21 +01:00
Vladimír Čunát
3a09a4b579
Merge branch 'master' into staging 
Hydra: ?compare=1480463
 2018-09-24 21:18:23 +02:00
Florian Klink
18c7fbd78d pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1 2018-09-24 21:08:31 +02:00
Edward Tjörnhammar
491a580716
pythonPackages.sharedmem: init at 0.3.5 2018-09-24 17:00:55 +02:00
Jörg Thalheim
db05dd8b6d
Merge pull request #47268 from Ma27/fix-py3exiv2 
python3Packages.py3exiv2: fix build
 2018-09-24 13:52:43 +01:00
Maximilian Bosch
50f23da8e6
python3Packages.py3exiv2: fix build 
Recent boost versions name their `python3` shared objects
`boost_python3x` rather than `boost_python3`.

See https://hydra.nixos.org/build/80712295
Addresses #45960
 2018-09-24 14:32:50 +02:00
Jörg Thalheim
3e270ff919
Merge pull request #46668 from mbode/doitlive_4 
doitlive: 3.0.3 -> 4.0.1
 2018-09-24 13:26:27 +01:00
Maximilian Bosch
fbeb94dd46
Revert "python: ldappool: 2.2.0 -> 2.3.0" 
This reverts commit 29acc8339f.
 2018-09-24 13:35:05 +02:00
Dmitry Kalinkin
cd1b9d93e6 pyjet: init at 1.3.0 (#47243) 2018-09-23 22:40:29 +02:00
Maximilian Bosch
5ad7aedf63 pythonPackages.pyftgl: fix build (#47232) 
See https://hydra.nixos.org/build/80705583

Recent `boost` versions with `python` enabled have changed their naming
scheme for `boost_python` shared objects which causes issues with the
proper linking when building `pyftgl`.

Previously the library was named `boost_python3`, no it's named
`boost_python36` for current python (3.6.x).

The same issue applies for the `python2`.

Addresses #45960
 2018-09-23 22:39:21 +02:00
Andrew Dunham
e141f7cd2f pythonPackages.flask_assets: fix tests (#47203) 2018-09-23 10:02:51 +02:00
Dmitry Vyal
f7f8b60ace pytorch-0.4 rpath fix, some tests reenabled 2018-09-23 09:36:32 +02:00
Frederik Rietdijk
14673d61ed Merge master into staging 2018-09-23 09:33:09 +02:00
Frederik Rietdijk
56853dc6d8
Merge pull request #45941 from NixOS/staging-next 
Staging next
 2018-09-23 09:31:28 +02:00
Frederik Rietdijk
343ac4d2fc
Merge pull request #42619 from nyanloutre/pythonPackages.block-io 
pythonPackages.block-io: init at 1.1.8
 2018-09-23 09:27:51 +02:00
Maximilian Bode
ff2dddac7d pythonPackages.click-completion: init at 0.4.1 2018-09-22 09:52:49 +02:00
Maximilian Bode
af7adc206d pythonPackages.shellingham: init at 1.2.6 2018-09-22 09:52:48 +02:00
Maximilian Bode
be1f39244f pythonPackages.click-didyoumean: init at 0.0.3 2018-09-22 09:52:48 +02:00
Orivej Desh
e78cf6ecba python.pkgs.pysam: 0.13.0 -> 0.15.1 2018-09-21 22:48:56 +00:00
Tobias Happ
d7b8f68c05 pythonPackages.dependency-injector: 3.13.1 -> 3.13.2 (#47139) 2018-09-21 20:08:02 +02:00
Matthew Bauer
92158a4b2c
Merge pull request #45776 from bkchr/gst_1_14_2 
Gstreamer: 1.14.0 -> 1.14.2
 2018-09-20 18:02:58 -05:00
xeji
9c02914b42
pythonPackages.circus: fix build, add meta (#47066) 2018-09-21 00:18:13 +02:00
xeji
f3a0c8a3aa
pythonPackages.nilearn: disable still failing tests (#46918) 
A previous attempt to fix tests failing on some machines (#46850)
was unsuccessful, they still failed on Hydra sometimes while
succeeding locally. Revert #46850 and disable these tests instead.
 2018-09-19 23:50:22 +02:00
Assassinkin
aaa3e3f0b4 pythonPackages.osmnx: init at 0.8.2 2018-09-19 16:14:37 +01:00
xeji
970393c34a
pythonPackages.nilearn: fix test_signal tests (#46850) 
These tests failed on some machines, probably due to lower arithmetic
presicion. Reduce required precision from 13 to 8 decimal digits.
 2018-09-19 16:15:02 +02:00
Jörg Thalheim
b224eef108 python3.pkgs.typeguard: fix builds by applying utf-8 locales 
ZHF #45960
 2018-09-19 15:11:31 +01:00
Benjamin Hipple
426c2856d7 pythonPackages.python-binance: init at 0.7.0 
Library for communicating with the Binance REST API.
 2018-09-18 21:44:27 -04:00
John Ericson
7319013ea1 Merge remote-tracking branch 'upstream/master' into staging 2018-09-18 16:55:42 -04:00
Frederik Rietdijk
3126be4308
Merge pull request #46627 from costrouc/costrouc/dask-extensions 
pythonPackages.dask-*: init
 2018-09-18 19:24:49 +02:00
Assassinkin
de9fb389f4 pythonPackages.fuse: 0.2.1 -> 0.3.1 | refactor | python3 support 2018-09-18 19:05:34 +02:00
Roger Qiu
31554915a4 pythonPackages.bjoern: init at 2.2.2 2018-09-18 18:51:51 +02:00
Jörg Thalheim
ad11711387
Merge pull request #46829 from adamtulinius/patch-3 
pythonPackages.gmpy: update homepage
 2018-09-18 13:55:02 +01:00
Adam Finn Tulinius
c7e35b256c
pythonPackages.gmpy2: update homepage 2018-09-18 14:29:48 +02:00
Adam Finn Tulinius
74d1f4c20b
pythonPackages.gmpy: update homepage 2018-09-18 14:25:28 +02:00
Vladyslav Mykhailichenko
336a913f42 pythonPackages.pgspecial: 1.8.0 -> 1.11.2 2018-09-18 14:00:59 +03:00
Jörg Thalheim
7d39e99a1e
Merge pull request #46316 from erosennin/psycopg-2.7.5 
pythonPackages.psycopg2: 2.7.1 -> 2.7.5
 2018-09-18 11:33:06 +01:00
Jörg Thalheim
080b3ef0b5 python2.pkgs.mypy_extensions: also enable python2 2018-09-18 08:05:02 +01:00
Jörg Thalheim
bab28c26f1
Merge pull request #46788 from teto/mypy630 
python3Packages.mypy: 0.620 -> 0.630
 2018-09-18 08:01:53 +01:00
Maximilian Bosch
5f2eacccf6 pythonPackages.mahotas: skip test_moments.test_normalize and test_texture.test_haralick3d testcase (#46793) 
As stated in #46368, this package seems to have issues with impure tests
(reported in https://github.com/luispedro/mahotas/issues/97).

Unfortunately the `release-18.09` job on Hydra fails at the attempt to
build this package since `test_moments.test_normalize1` and
`test_texture.test_haralick3d` breaks. Until
the root cause is identified, we skip the disabled tests to ensure that
the resulting package is not entirely broken (which can't be confirmed
with `doCheck = false`).

See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python27Packages.mahotas.x86_64-linux
See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python36Packages.mahotas.x86_64-linux
See https://logs.nix.ci/?key=nixos/nixpkgs.46793&attempt_id=b85a638d-dcb0-41d3-ab2a-9616a3bb0175

/cc @xeji @luispedro
 2018-09-17 21:33:47 +02:00
Matthieu Coudron
676ceb81b7 python3Packages.mypy: 0.620 -> 0.630 
Now requires mypy_extensions so added it as well.
 2018-09-18 00:31:41 +09:00
Uli Baum
a66c00d780 pythonPackages.dendropy: fix build 
Build failed after update to 4.4.0 because the tests are incorrectly
packages in the pypi version.
Switch to upstream github repo, fix tests, disable failing test cases
 2018-09-16 17:37:28 +02:00
Jörg Thalheim
f03e9545eb
Merge pull request #46732 from worldofpeace/asyncssh/1.14.0 
python.pkgs.asyncssh: 1.13.3 -> 1.14.0
 2018-09-16 11:22:16 +01:00
worldofpeace
710b3d678b python.pkgs.asyncssh: 1.13.3 -> 1.14.0 2018-09-16 04:48:14 -04:00
Vincent Laporte
5b8b9a08e7
pythonPackages.libnacl: fix build on darwin 2018-09-16 06:24:49 +00:00
xeji
13c500ae16
pythonPackages.pyodbc: fix build (#46703) 
Build with unixODBC instead of libiodbc, see discussion in
https://github.com/mkleehammer/pyodbc/issues/444
 2018-09-15 23:13:51 +02:00
Maximilian Bode
2438ceb5b4 salt: fix darwin build by specifying dependency on tornado 4 
/cc ZHF #45961
 2018-09-15 10:09:36 +02:00
Symphorien Gibol
46cd67e6a1 pythonPackages.{pyocr,pypillowfight}: fix homepage 2018-09-14 14:32:32 +02:00
Symphorien Gibol
cd599c8fa6 pythonPackages.pypillowfight: 0.2 -> 0.2.4 2018-09-14 14:32:32 +02:00
Symphorien Gibol
5314a74ee6 pythonPackages.pyocr: 0.4.7 -> 0.5.3 2018-09-14 14:32:31 +02:00
xeji
f1f8ce80c4
Merge pull request #46608 from xeji/p/python-fixes-2 
pythonPackages: fix some broken builds
 2018-09-14 10:56:59 +02:00
Chris Ostrouchov
bd6873774e
pythonPackages.dask-xgboost: init at 0.1.5 2018-09-13 16:42:25 -04:00
Chris Ostrouchov
72bd196b89
pythonPackages.dask-image: init at 0.1.1 2018-09-13 16:41:58 -04:00
Chris Ostrouchov
ce4b7154ac
pythonPackages.slicerator: init at 0.9.8 2018-09-13 16:41:34 -04:00
Chris Ostrouchov
1a67a15c6f
pythonPackages.pims: init at 0.4.1 2018-09-13 16:41:13 -04:00
Chris Ostrouchov
41cd200b64
pythonPackages.dask-jobqueue: init at 0.4.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
32cb956fea
pythonPackages.dask-glm: init at 0.1.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
93cdaaa3d4
pythonPackages.dask-ml: init at 0.10.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
e5cd420e73
pythonPackages.distributed: refactor move to fetchPypi 
There is a bug when using git repo in that the package does not get a
version (shows up as `0+unknown`). Using pypi fixes this issue allows
allows for auto upgrades.
 2018-09-13 15:10:40 -04:00
Uli Baum
d9bdd64f04 pythonPackages.nilearn: fix tests 
disable failing tests
 2018-09-13 19:40:29 +02:00
Uli Baum
be12bb81aa pythonPackages.wordfreq: 2.0 -> 2.2.0, fix build 
Previous version didn't build (test failure).
Update to latest, tests use pytest now, disable failing tests.
 2018-09-13 18:16:34 +02:00
Uli Baum
0bda601ee5 pythonPackages.pytest-rerunfailures: fix build 
some tests fail since pytest 3.7.2 -> 3.7.4 update, disable them
 2018-09-13 17:48:38 +02:00
Uli Baum
781eaa1377 pythonPackages.flask-pymongo: fix build 
add missing dependency: vcversioner
 2018-09-13 17:25:38 +02:00
Uli Baum
9e4b0b795c pythonPackages.eve: fix build, drop incorrect dependencies 
Build failed because of dependency Flask-PyMongo, which actually
isn't a dependency of eve as they have their own flask_pymongo code.

- Drop incorrect dependency flask-pymongo
- Drop redunant dependencies already propageted by flask:
  itsdangerous, werkzeug, jinja2
- Drop dependency markupsafe, not required any more
 2018-09-13 17:09:51 +02:00
Uli Baum
abe97e9446 pythonPackages.daphne: 2.1.0 -> 2.2.2 
Update, re-enable all tests on linux, disable tests on darwin.
This fixes the build of pythonPackages.channels
 2018-09-13 16:45:27 +02:00
Uli Baum
b54677969b pythonPackages.zodb: fix tests 
Tests failed after `persistent` was updated to 4.4.
Apply an upstream patch to fix them.
 2018-09-13 13:35:34 +02:00
xeji
2bc08ce0f5
Merge pull request #46488 from xeji/p/python-fixes 
pythonPackages.{pydub,readme_renderer,pyfakefs,us,restview}: fix build
 2018-09-13 11:38:20 +02:00
Uli Baum
6dc57134da pythonPackages.restview: fix tests 
Failed after readme_renderer was updated. Apply an upstream patch.
 2018-09-13 11:21:19 +02:00
xeji
68b7de9e2e
pythonPackages.BTrees: fix build (#46588) 
a test case failed since the update to 4.5.1, disable it
 2018-09-13 02:32:37 +02:00
xeji
decd819911
Merge pull request #46556 from rnhmjoj/lastpass 
qutebrowser: patch all python scripts
 2018-09-12 23:51:40 +02:00
Robert Schütz
c15a94b6d1
Merge pull request #45644 from jluttine/update-rlp-1.0.2 
pythonPackages.rlp: 1.0.1 -> 1.0.2 (with some new deps)
 2018-09-12 12:55:29 +02:00
Jörg Thalheim
63668d33b2 python-language-server: 0.19.0 -> 0.21.2 2018-09-12 09:03:08 +01:00
Jörg Thalheim
e4393102e6 python-jsonrpc-server: init at 0.0.1 2018-09-12 09:03:08 +01:00
Jörg Thalheim
8d4afa5f2e
pythonPackage.backports-shutil-which: enable tests 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
d0ce8834ae
pythonPackages.libagent: fix propagatedBuildInputs 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
80b64a2e04
pythonPackage.backports-shutil-which: init at 3.5.1 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
c9bf7f67b9
pythonPackage.pymsgbox: init at 1.0.6 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
5c9db2f02f
pythonPackages.ledgerblue: fix build inputs 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
38e86a8f1e
pythonPackages.python-u2flib-host: init at 3.0.3 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
f053daf36c
pythonPackages.rlp: fix build 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
9f8e6148c5
pythonPackages.eth-utils: init at 1.2.0 2018-09-12 08:44:18 +03:00
Jaakko Luttinen
541a13ca0a
pythonPackages.eth-typing: init at 1.1.0 2018-09-12 08:44:18 +03:00
rnhmjoj
d117e3ccd8
python.pkgs.construct: 2.8.16 -> 2.9.45 2018-09-12 03:35:26 +02:00
rnhmjoj
dca577a36c
python.pkgs.pykeepass: init at 3.0.2 2018-09-12 03:35:25 +02:00
rnhmjoj
75b2058aff
python.pkgs.pyreadability: init at 0.4.0 2018-09-12 03:23:04 +02:00
rnhmjoj
e281f0e686
python.pkgs.tldextract: init at 2.2.0 2018-09-12 03:23:04 +02:00
rnhmjoj
99dad9d7f0
python.pkgs.requests-file: init at 1.4.3 2018-09-12 03:23:04 +02:00
Maximilian Bosch
a25dcb6607 python3Packages.pyowm: fix python3 build (#46549) 
See https://hydra.nixos.org/build/80714323

Version 2.9 requires `geojson==2.x'. To allow 2.4, the constraint
required some patching using `substituteInPlace'.

Addresses #45960
 2018-09-12 01:23:36 +02:00
Ryan Mulligan
8d4248a4cb
Merge pull request #44657 from costrouc/costrouc/dask-distributed 
pythonPackages.distributed: 1.15.1 -> 1.22.1
 2018-09-11 16:05:58 -07:00
Chris Ostrouchov
027b9beb58 fixup! merge: fixing changes with nixpkgs since pull-request 2018-09-11 17:14:12 -04:00
Christopher Ostrouchov
dac171dd5d
merge: fixing changes with nixpkgs since pull-request 
- pytest-timeout: no longer requires patch
 - joblib: was improperly merged with the github merge tool (never
   using again)
 2018-09-11 14:24:59 -04:00
Jaakko Luttinen
c44504410b
pythonPackages.eth-hash: init at 0.1.14 2018-09-11 17:49:48 +03:00
nyanloutre
71a8aafbb8 pythonPackages.block-io: init at 1.1.8 2018-09-11 15:16:51 +02:00
nyanloutre
3ffca639a4 pythonPackages.base58: init at 1.0.0 2018-09-11 15:16:51 +02:00
xeji
f201f8c3fd
pythonPackages.pytestflakes: fix build (#46500) 
- disable a failing test case that looks broken
- remove pytestcache depencency that was dropped upstream
 2018-09-11 11:15:03 +02:00
Uli Baum
bd02a1931a pythonPackages.pyfakefs: fix darwin build 
One test failed on darwin due to case-insensitive file system,
disable it.
 2018-09-10 22:42:23 +02:00
Uli Baum
bc036397a3 pythonPackages.pydub: fix aarch64 build 
one test failed due to rounding errors, disable it
 2018-09-10 22:36:14 +02:00
Uli Baum
40c469e56b pythonPackages.pydub: remove obsolete patch 2018-09-10 18:19:01 +02:00
Uli Baum
80ecef8e4b pythonPackages.pydub: fix build and tests 
- remove obsolete patch that caused build failure
- no tests were run because required data files were missing in pypi
  version; use github version instead
 2018-09-10 18:05:40 +02:00
Uli Baum
d2a885a3b5 pythonPackages.pyfakefs: 3.4.1 -> 3.4.3, fix build 
Update and disable some failing test cases
 2018-09-10 17:43:18 +02:00
Uli Baum
bb1f3422e0 pythonPackages.readme_renderer: fix build 
Disable one test case that has failed since last bleach update.
 2018-09-10 17:19:05 +02:00
Uli Baum
a7166cdc35 pythonPackages.us: fix build 
Required jellyfish==0.5.6 but we have 0.6.1. Loosen requirements.
 2018-09-10 17:06:54 +02:00
Timo Kaufmann
2b6144d1ad
Merge pull request #46368 from Ma27/fix-mahotas 
pythonPackages.mahotas: fix build, move expression
 2018-09-10 11:56:50 +02:00
Maximilian Bosch
ee897b64ff
pythonPackages.mahotas: fix build, move expression 
See https://hydra.nixos.org/build/80828287

Moves `mahotas` out of `python-packages.nix` into its own file and fixes
broken test cases by skipping them using nosetest's `@nottest`
annotation.

These tests broke from time to time in a sandbox and are therefore
considered impure.

Addresses #45960
 2018-09-10 11:32:58 +02:00
Josef Kemetmüller
6f891ff66e pythonPackages.joblib: Disable flaky test (#46439) 
The test `test_nested_parallelism_limit` fails on darwin.
 2018-09-09 22:42:17 +02:00
Josef Kemetmüller
5e0c468737 pythonPackages.fiona: Fix darwin build (#46435) 2018-09-09 22:40:49 +02:00
xeji
12fae6e5c7
Merge pull request #46440 from knedlsepp/fix-pythonPackages.libusb1 
pythonPackages.libusb1: Fix darwin build
 2018-09-09 22:25:06 +02:00
Josef Kemetmüller
b633fc4fb4 pythonPackages.libusb1: Disable flaky test 2018-09-09 22:09:34 +02:00
xeji
d18aaceda6
Merge pull request #46438 from knedlsepp/fix-pythonPackages.flask_ldap_login 
pythonPackages.flask_ldap_login: Fix build
 2018-09-09 22:00:59 +02:00
Josef Kemetmüller
b667a76eac pythonPackages.flask_ldap_login: Disable on python3 2018-09-09 21:48:54 +02:00
Josef Kemetmüller
a4b040e69f pythonPackages.cozy: Disable on python2 (#46436) 
Cozy does not support python2.
 2018-09-09 21:33:45 +02:00
Josef Kemetmüller
063aa389df pythonPackages.libusb1: Fix darwin build 2018-09-09 20:56:34 +02:00
Josef Kemetmüller
25f8753bf4 pythonPackages.flask_ldap_login: 0.3.0 -> 0.3.4 2018-09-09 20:39:46 +02:00
Josef Kemetmüller
d4e89680d2 pythonPackages.flask_ldap_login: Fix build 2018-09-09 20:39:15 +02:00
Jörg Thalheim
201ee19758
Merge pull request #46377 from dasJ/nonhttp 
treewide: Use http/https for homepages
 2018-09-09 15:50:25 +01:00
xeji
17c51ef436
Merge pull request #45925 from markuskowa/ompi-up 
slurm: 17.11.9-2 -> 18.08.0-1
 2018-09-09 14:20:00 +02:00
Maximilian Bode
c020a59ccd pythonPackages.tifffile: fix python 2 build (#46415) 2018-09-09 12:13:36 +02:00
Maximilian Bode
dfcf07d9d3 pythonPackages.django-raster: fix build (#46413) 2018-09-09 11:34:18 +02:00
Jan Malakhovski
b7bd0561be Merge branch 'master' into staging 2018-09-08 22:08:32 +00:00
Markus Kowalewski
7dd2f4ec9c
pyslurm: 20180811 -> 20180908 2018-09-08 23:16:37 +02:00
xeji
113f4d7b44
pythonPackages.persistent: fix build (#46364) 
Documentation-related tests failed, the docs didn't build correctly
because of missing dependencies sphinx and manuel. Add them.
 2018-09-08 21:35:33 +02:00
Maximilian Bode
73e75a7d16 pythonPackages.confluent-kafka: fix build (#46380) 
cc #45960
 2018-09-08 21:32:04 +02:00
Janne Heß
9ef77854f7 treewide: Use http/https for homepages 2018-09-08 18:30:00 +02:00
Maximilian Bosch
a02002deba pythonPackages.pycaption: fix build (#46356) 
The `beaitufulsoup4` package distributed by `nixpkgs` is now at `4.6.3`.

Additionally it fixes `gnomecaption` which depends on the broken
`pycaption` package.

See https://hydra.nixos.org/build/81000247
See https://hydra.nixos.org/build/80723223

Addresses #45960
 2018-09-08 11:20:47 +02:00
Maximilian Bosch
218ac50fd4 pythonPackages.trio: fix build (#46342) 
Fixes the build for `python3Packages.trio' for the next ZHF iteration.
Please refer to the Hydra build for further reference: https://hydra.nixos.org/build/80617356

`python3Packages.sniffio` is needed for the build, otherwise the build
aborts with an error like this:

```
  Could not find a version that satisfies the requirement sniffio (from trio==0.6.0) (from versions: )
No matching distribution found for sniffio (from trio==0.6.0)
```

See #45960
 2018-09-08 01:02:55 +02:00
Alexey Shmalko
e5e4fd8ede
Merge pull request #46327 from costrouc/costrouc/markerlib 
pythonPackages.markerlib: init at 0.6.0
 2018-09-07 23:38:16 +03:00
Chris Ostrouchov
2895560f4f
pythonPackages.markerlib: init at 0.6.0 2018-09-07 14:08:35 -04:00
xeji
6f3ff5acc7
Merge pull request #46186 from costrouc/costrouc/python-ncclient 
pythonPackages.ncclient: refactor + init pythonPackages.selectors2
 2018-09-07 17:33:58 +02:00
Chris Ostrouchov
a726956b42
pythonPackages.ncclient: refactor 
adding selectors2 as dependency of ncclient. Added recently 20 days
ago in August. 8ef20f2828
 2018-09-07 10:22:22 -04:00
Chris Ostrouchov
11c3fe2258
pythonPackages.selectors2: init at 2.0.1 
Added package becuase now dependency of ncclient.
 2018-09-07 10:22:22 -04:00
Andrey Golovizin
2bec98ae06 pythonPackages.psycopg2: 2.7.1 -> 2.7.5 2018-09-07 15:40:34 +02:00
Daniël de Kok
d261df5fc1 python2Packages.spacy_models: update all models to version 2.0.0 (#46182) 
Update the model list to those models that are compatibly with the
latest spaCy version:

https://github.com/explosion/spacy-models/blob/master/compatibility.json

The updated model file evaluates to the following packages:

python2Packages.spacy_models.de_core_news_sm
python2Packages.spacy_models.en_core_web_lg
python2Packages.spacy_models.en_core_web_md
python2Packages.spacy_models.en_core_web_sm
python2Packages.spacy_models.en_vectors_web_lg
python2Packages.spacy_models.es_core_news_md
python2Packages.spacy_models.es_core_news_sm
python2Packages.spacy_models.fr_core_news_md
python2Packages.spacy_models.fr_core_news_sm
python2Packages.spacy_models.it_core_news_sm
python2Packages.spacy_models.nl_core_news_sm
python2Packages.spacy_models.pt_core_news_sm
python2Packages.spacy_models.xx_ent_wiki_sm
python3Packages.spacy_models.de_core_news_sm
python3Packages.spacy_models.en_core_web_lg
python3Packages.spacy_models.en_core_web_md
python3Packages.spacy_models.en_core_web_sm
python3Packages.spacy_models.en_vectors_web_lg
python3Packages.spacy_models.es_core_news_md
python3Packages.spacy_models.es_core_news_sm
python3Packages.spacy_models.fr_core_news_md
python3Packages.spacy_models.fr_core_news_sm
python3Packages.spacy_models.it_core_news_sm
python3Packages.spacy_models.nl_core_news_sm
python3Packages.spacy_models.pt_core_news_sm
python3Packages.spacy_models.xx_ent_wiki_sm
 2018-09-07 12:58:53 +02:00
Christopher Ostrouchov
66e1288962 pythonPackages.kubernetes: add missing dependency (#46179) 
fix build issue from missing dependency `adal`. This is due to `adal`
being added as a dependency in July
23rd. 9afec55f4a (diff-b4ef698db8ca845e5845c4618278f29a)
 2018-09-07 11:25:53 +02:00
Christopher Ostrouchov
427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June c0b9308988.
 2018-09-07 09:26:07 +02:00
Christopher Ostrouchov
6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov
b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov
b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
Christopher Ostrouchov
7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
Chris Ostrouchov
1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Matthieu Coudron
13050ccc0b python3Packages.genanki: init at 0.6.0 
Library to generate anki flashcards.
 2018-09-06 18:31:57 +02:00
Jörg Thalheim
89571b255e
Merge pull request #45996 from teto/alot_completion 
[rdy] pythonPackages.alot: install zsh completion
 2018-09-06 11:28:09 +01:00
qolii
9f0efc084c pyopenssl: Disable some tests, for libressl support. (#46072) 2018-09-06 11:02:48 +01:00
Jörg Thalheim
9a585658e2
Merge pull request #46132 from costrouc/costrouc/pymatgen-networkx-dependency 
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1
 2018-09-06 09:55:18 +01:00
Sarah Brofeldt
a59f244b2c
Merge pull request #46126 from flokli/gmpy-phe 
pythonPackages: cleanup gmpy[2], add phe
 2018-09-06 10:31:56 +02:00
Sarah Brofeldt
574f893507
Merge pull request #46124 from erosennin/pymetar-1.0 
pythonPackages.pymetar: 0.21 -> 1.0
 2018-09-06 10:26:32 +02:00
Jörg Thalheim
df2cc4121b
Merge pull request #46125 from ashgillman/nipype-futures-py2-only 
python.pkgs.nipype: Futures is python 2 only. Also fix building.
 2018-09-06 08:25:33 +01:00
Chris Ostrouchov
63cf879d6c
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Christopher Ostrouchov
ed130935c8
Merge branch 'master' into costrouc/dask-distributed 2018-09-05 23:53:23 -04:00
Chris Ostrouchov
4f70170f8a
pythonPackages.distributed: 1.15.1 -> 1.22.1 
The github repository was downloaded instead of the pypi repository
for testing (needed `conftest.py`). Major work was done on the
underlying dependencies to make distributed work on python 2.7,
3+. Note that the test **do** take a significant amount of time (10-15
minutes).

 - moved to `python-modules`
 - compatible with 2.7, 3+
 - all tests pass (previously tests were not run)
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
7b920172db
pythonPackages.pytest-repeat: init at 0.6.0 
- compatible with 2.7, 3+
 - all tests pass and running
 2018-09-05 23:46:28 -04:00