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3659 Commits

Author SHA1 Message Date
Jörg Thalheim
660854a266
Merge pull request #88916 from zowoq/patches 2020-05-27 06:54:01 +01:00
Benjamin Hipple
f04a5af0cc
Merge pull request #82180 from bcdarwin/bppcore 
bppsuite: init at 2.4.1
 2020-05-26 21:07:25 -04:00
Lassulus
ed25a12070
Merge pull request #70487 from esclear/xflr5 
xflr5: init at 6.47
 2020-05-27 00:00:05 +02:00
zowoq
cb4cc7a480 sad: use patch file extension 2020-05-26 14:50:50 +10:00
Benjamin Hipple
d3082a31cd
Merge pull request #87544 from bcdarwin/vtk-8 
vtk: 7.1.1 -> 8.2.0
 2020-05-26 00:24:28 -04:00
Ben Darwin
45cd7beeb2 bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
Ryan Mulligan
85898181b0
Merge pull request #88844 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.7 -> 2.22.8
 2020-05-25 06:09:11 -07:00
Mario Rodas
bc4469005e
Merge pull request #88824 from r-ryantm/auto-update/lean 
lean: 3.13.1 -> 3.14.0
 2020-05-24 22:49:35 -05:00
R. RyanTM
a60a040236 picard-tools: 2.22.7 -> 2.22.8 2020-05-25 01:25:17 +00:00
R. RyanTM
7573e99a60 lean: 3.13.1 -> 3.14.0 2020-05-24 22:22:11 +00:00
R. RyanTM
c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 (#88766) 2020-05-24 13:32:14 -04:00
Dmitry Kalinkin
9eb3f39bca
Merge pull request #88713 from veprbl/pr/sherpa_2_2_10 
sherpa: 2.2.9 -> 2.2.10
 2020-05-23 21:56:57 -04:00
Dmitry Kalinkin
e6282f9f6c
sherpa: 2.2.9 -> 2.2.10 2020-05-23 16:22:08 -04:00
Ryan Mulligan
5505be7840
Merge pull request #88568 from r-ryantm/auto-update/last 
last: 1060 -> 1061
 2020-05-23 11:42:47 -07:00
Frederik Rietdijk
bc3c3b4a59 pythonPackages.kicad: bindings to kicad 
Add the Python bindings for kicad.

Following now functions

    $ nix run "(import ./. {}).python3.withPackages(ps: with ps; [ kicad  ])" -c python3 -c "import pcbnew"

Have not tested this any further.
 2020-05-23 15:44:14 +02:00
Mario Rodas
d30b7592c4
Merge pull request #88363 from r-ryantm/auto-update/clp 
clp: 1.17.5 -> 1.17.6
 2020-05-23 00:31:57 -05:00
R. RyanTM
25841d95c5 last: 1060 -> 1061 2020-05-22 02:21:55 +00:00
zimbatm
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol 
fahcontrol: 7.6.9 -> 7.6.13
 2020-05-21 12:12:37 +02:00
zimbatm
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer 
fahviewer: 7.6.9 -> 7.6.13
 2020-05-21 12:12:01 +02:00
R. RyanTM
f52889cd38 fahviewer: 7.6.9 -> 7.6.13 2020-05-21 08:53:14 +00:00
Evils
d798396684 kicad-unstable: 2020-05-06 -> 2020-05-14 2020-05-21 10:49:18 +02:00
Evils
a791245d51 kicad: 5.1.5 -> 5.1.6 2020-05-21 10:49:18 +02:00
R. RyanTM
0cc843b538 fahcontrol: 7.6.9 -> 7.6.13 2020-05-21 06:24:27 +00:00
Vincent Laporte
48f0d8b3c8 coq_8_11: 8.11.1 → 8.11.2 2020-05-20 19:21:42 +02:00
Timo Kaufmann
b811d52b9c
Merge pull request #88428 from timokau/nauty-27r1 
nauty: 26r12 -> 27r1
 2020-05-20 13:22:15 +00:00
Timo Kaufmann
d0e171395a nauty: 26r12 -> 27r1 
Changes: http://pallini.di.uniroma1.it/changes24-27.txt
 2020-05-20 14:59:46 +02:00
Timo Kaufmann
a276c4485c nauty: add meta.changelog 2020-05-20 14:59:46 +02:00
Ryan Mulligan
aae8733f96
Merge pull request #88210 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.4 -> 2.22.7
 2020-05-20 05:08:01 -07:00
R. RyanTM
d1b7e3f8cc clp: 1.17.5 -> 1.17.6 2020-05-20 10:04:01 +00:00
R. RyanTM
3450729658 picard-tools: 2.22.4 -> 2.22.7 2020-05-19 21:56:38 +00:00
Timo Kaufmann
7447395f9d
Merge pull request #88177 from timokau/palp-2.11-hash-fixup 
palp: fix hash
 2020-05-19 18:43:59 +00:00
Timo Kaufmann
aae9af9632 palp: fix hash 
It looks like the upstream tarball was changed since I updated palp 3
days ago. Hopefully that won't happen again.
 2020-05-19 17:50:43 +02:00
Gabriel Ebner
ade0eba99d
Merge pull request #88131 from r-ryantm/auto-update/elan 2020-05-19 09:38:28 +02:00
Lancelot SIX
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0 
cytoscape: 3.7.2 -> 3.8.0
 2020-05-19 08:32:48 +01:00
R. RyanTM
748e2fcf6c elan: 0.10.0 -> 0.10.2 2020-05-19 05:02:43 +00:00
Timo Kaufmann
91da9ed129
Merge pull request #87944 from timokau/palp-2.11 
palp: 2.1 -> 2.11
 2020-05-18 19:58:59 +00:00
Ryan Mulligan
fdf4439acc
Merge pull request #87494 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.0 -> 3.14.1
 2020-05-18 08:06:19 -07:00
Timo Kaufmann
d65850e975 palp: 2.1 -> 2.11 
According to the homepage[1]:

> Small change in Mori.h for compatibility with gcc_10 (thanks to J.
  Puydt) [May 15, 2020].

Disabling the strictoverflow seems to be no longer necessary (I'm
relying on the check phase here).

[1] http://hep.itp.tuwien.ac.at/~kreuzer/CY/CYpalp.html
 2020-05-16 15:07:57 +02:00
Timo Kaufmann
51de320353 palp: add meta.changelog 2020-05-16 15:05:45 +02:00
Mario Rodas
b022ecbf5d
lean: 3.10.0 -> 3.13.1 2020-05-16 04:20:00 -05:00
Matt Huszagh
e8215cd634 colmap: update boost to 1.72 to fix build 2020-05-15 09:42:36 -07:00
R. RyanTM
d11e5f1a4e verilator: 4.032 -> 4.034 2020-05-12 22:27:21 -07:00
R. RyanTM
e07dfd38f1 wxmaxima: 20.02.4 -> 20.04.0 2020-05-12 22:12:53 -07:00
Ben Darwin
5e716bf469 vtk: 7.1.1 -> 8.2.0 
- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5
 2020-05-11 17:54:29 -04:00
Jörg Thalheim
3a9543b778
Merge pull request #82634 from evils/kicad 2020-05-11 10:27:18 +01:00
R. RyanTM
ae4d9cb9a0 stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00
R. RyanTM
92d970c766
snakemake: 5.15.0 -> 5.16.0 (#87496) 2020-05-10 10:09:53 -04:00
R. RyanTM
85b39960b5 SPAdes: 3.14.0 -> 3.14.1 2020-05-10 13:06:19 +00:00
Dmitry Kalinkin
e80302dc7d
Merge pull request #86142 from bcdarwin/itk-5.1.0 
Itk: 5.0.1 -> 5.1.0
 2020-05-09 15:03:28 -04:00
Luz
5e40913eac librepcb: 0.1.3 -> 0.1.4 2020-05-09 09:10:20 +02:00
albakham
0c0f353d62 rofi-calc: 1.6 -> 1.7 2020-05-08 22:12:49 -04:00
Gabriel Ebner
115fa1c129 elan: 0.9.0 -> 0.10.0 2020-05-08 17:17:03 +02:00
Pavol Rusnak
6abf4a43ad
treewide: per RFC45, remove more unquoted URLs 2020-05-08 15:20:47 +02:00
Gabriel Ebner
f6f5f6a30f elan: 0.8.0 -> 0.9.0 2020-05-07 15:35:13 +02:00
Mario Rodas
60762e9524
Merge pull request #86216 from bcdarwin/mrtrix-update 
mrtrix: 3.0_RC3_latest -> 3.0.0
 2020-05-07 06:57:44 -05:00
R. RyanTM
bdcefc1053 marvin: 20.9.0 -> 20.10.0 2020-05-06 23:16:23 -07:00
Evils
2d3d8c4d66 kicad-unstable: 2020-04-25 -> 2020-05-06 2020-05-07 02:15:57 +02:00
Evils
1059fdf143 kicad: link utils; clean up wrapper installPhase 2020-05-07 01:54:51 +02:00
Evils
95e4e33bdf kicad-unstable-small: init to make kicad-unstable 
the -small packages depend on all hydra buildable dependencies
the non-small ones depend on packages3d which exceeds hydra's limit

set platforms to all (kicad is cross-platform)
clarify package differences in the description

set maintainers on just the top level derivation

switch -unstable to not save debug symbols

indicate patch in version string

note broken dependencies
 2020-05-07 01:54:50 +02:00
Evils
18a1b153ac kicad: expose base and libraries attributes 2020-05-07 01:54:50 +02:00
Yurii Rashkovskii
c73875ea1e tlaplus: 1.5.6 -> 1.7.0 2020-05-06 12:26:10 -07:00
Jörg Thalheim
3c4096f18b
Merge pull request #86808 from doronbehar/rename-opencv 2020-05-05 20:19:50 +01:00
tim put
33b968049a
kstars: init at 2.9.8 (#86032) 
* kstars: init at 2.9.8

* Update pkgs/applications/science/astronomy/kstars/default.nix

Co-authored-by: Manuel Bärenz <programming@manuelbaerenz.de>

Co-authored-by: Manuel Bärenz <programming@manuelbaerenz.de>
 2020-05-05 20:38:28 +02:00
markuskowa
73dc3fc400
Merge pull request #86887 from r-ryantm/auto-update/gromacs 
gromacs: 2020.1 -> 2020.2
 2020-05-05 19:19:04 +02:00
Doron Behar
53effac040 mathematica: explicitly use opencv2 2020-05-05 13:48:55 +03:00
Lancelot SIX
b9d13090a8
cytoscape: 3.7.2 -> 3.8.0 
See https://cytoscape.org/release_notes_3_8_0.html for release
information
 2020-05-05 09:52:27 +01:00
R. RyanTM
ed5575071f gromacs: 2020.1 -> 2020.2 2020-05-05 05:59:23 +00:00
Ben Darwin
6f1430a802 ezminc: switch from itk5 to itk4 branch 
- itk5 branch currently lacks support for itk 5.1
 2020-05-05 00:08:04 -04:00
Mario Rodas
3b6c399fc3
Merge pull request #86720 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.2 -> 2.22.4
 2020-05-04 06:01:31 -05:00
R. RyanTM
0a115f8087 cryptominisat: 5.6.8 -> 5.7.0 2020-05-04 01:41:26 -07:00
R. RyanTM
877b1cdad7 picard-tools: 2.22.2 -> 2.22.4 2020-05-04 04:07:44 +00:00
Mario Rodas
3253c03d2e
lean: 3.9.0 -> 3.10.0 2020-05-02 04:20:00 -05:00
Benjamin Hipple
6b21541772
Merge pull request #86101 from dkudriavtsev/magic-vlsi 
magic-vlsi: init at 8.3.5
 2020-05-02 13:51:41 -04:00
R. RyanTM
a930faab93 mxnet: 1.4.1 -> 1.6.0 2020-05-02 10:17:38 +02:00
R. RyanTM
d0afae4298 dcm2niix: 1.0.20190902 -> 1.0.20200331 2020-05-02 10:16:22 +02:00
Wulfsta
5dbc4f7fda elmerfem: init at release-8.4 2020-05-01 18:35:57 -07:00
Timo Kaufmann
7866440f12
Merge pull request #86274 from samlich/sage-matrix-double-dense 
sage: fix doctest matrix_double_dense is_unitary
 2020-05-01 22:12:10 +00:00
Peter Simons
205e4dffd5
Merge pull request #86081 from jabranham/update-r 
R: 3.6.3 --> 4.0.0 & update packages
 2020-05-01 20:25:14 +02:00
samlich
c0bd938e5c
sage: fix doctest matrix_double_dense is_unitary 2020-05-01 16:04:23 +00:00
R. RyanTM
7333b8cd6d eagle: 9.6.0 -> 9.6.1 2020-05-01 09:09:10 +02:00
Dmitry Kalinkin
babf5477f5
Merge pull request #86251 from veprbl/pr/sherpa_2_2_9 
sherpa: 2.2.8 -> 2.2.9
 2020-04-29 19:10:43 -04:00
Jan Tojnar
2b5e2ffe0a
Merge pull request #86165 from jtojnar/libusb-compat-rename 2020-04-29 08:26:08 +02:00
Dmitry Kalinkin
ae0685129b
sherpa: 2.2.8 -> 2.2.9 2020-04-28 16:46:02 -04:00
evils
e257a92472
foldingathome: 7.5.1 -> 7.6.9 (#86171) 2020-04-28 17:20:43 +00:00
Ben Darwin
70171d321e mrtrix: 3.0_RC3_latest -> 3.0.0 2020-04-28 10:37:06 -04:00
Daniël de Kok
3ba5bc7130 fasttext: 0.9.1 -> 0.9.2 
Changelog:

https://github.com/facebookresearch/fastText/releases/tag/v0.9.2
 2020-04-28 12:14:54 +02:00
Jan Tojnar
e89e2edc73
libusb-compat-0_1: rename from libusb 2020-04-28 05:33:41 +02:00
Dmitry Kudriavtsev
69f54c1e19 magic-vlsi: init at 8.3.5 2020-04-27 00:13:59 -07:00
Alex Branham
8ce6552d64
R: 3.6.3 -> 4.0.0 2020-04-26 17:06:07 -04:00
Evils
b80bd001e2
kicad-unstable: 2020-02-10 -> 2020-04-25 
cc #82634
 2020-04-26 13:38:37 -04:00
Evils
75963b9160
kicad: update.sh: set -e 
and some more suggestions from veprbl

warn if an empty item gets through anyway

and use UTC time

cc #82634
 2020-04-26 13:38:13 -04:00
Renato Garcia
22133c6bf3
snakemake: 5.13.0 -> 5.15.0 (#85913) 2020-04-25 09:19:54 -04:00
Konrad Borowski
f527f9db3a snakemake: update homepage link to use HTTPS 2020-04-24 19:44:59 -07:00
Konrad Borowski
40dd2c27c6 rink: update homepage link to use HTTPS 2020-04-24 19:44:59 -07:00
Ben Wolsieffer
bc93f123ea mavproxy: 1.8.18 -> 1.8.19 2020-04-24 18:03:57 -07:00
Lassulus
d0b1de5491
Merge pull request #70401 from bzizou/quast 
Quast: init at 5.0.2
 2020-04-24 20:26:04 +02:00
Bruno Bzeznik
eb51b462aa Quast: init at 5.0.2 2020-04-24 10:11:54 +02:00
Pavol Rusnak
461a252bee
verifast: change license to MIT 
It seems verifast was relicensed to MIT in 2016:
b3c1bce76a

As this was the only package using lib.licenses.msrla I dropped it.
 2020-04-23 09:59:33 +00:00
worldofpeace
b4d5dd861b
Merge pull request #84673 from mmilata/qt5-mkDerivation-stdenv 
Use qt5's mkDerivation in packages that otherwise crash
 2020-04-22 13:39:46 -04:00
Martin Milata
7d1c2c05c5 caneda: use qt5's mkDerivation 2020-04-22 15:21:49 +02:00
Frederik Rietdijk
ec21df329a
Merge pull request #85636 from matthewbauer/blas-lapack-fix-fallout-from-83888 
BLAS/LAPACK fix fallout from #83888
 2020-04-21 19:59:16 +02:00
Justin Bedo
d8d6ecc418 mosdepth: 0.2.6 -> 0.2.9 2020-04-21 19:42:05 +02:00
Maximilian Bosch
68684b6376
stellarium: 0.20.0 -> 0.20.1 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.1
 2020-04-21 18:05:15 +02:00
Matthew Bauer
ff2f2644f8 blas,lapack: use isILP64 instead of is64bit 
This is a better name since we have multiple 64-bit things that could
be referred to.

LP64  : integer=32, long=64, pointer=64
ILP64 : integer=64, long=64, pointer=64
 2020-04-20 16:02:43 -05:00
markuskowa
d9af81af16
Merge pull request #85006 from r-ryantm/auto-update/verilator 
verilator: 4.030 -> 4.032
 2020-04-20 16:51:31 +02:00
Benjamin Hipple
e4db75f46d
Merge pull request #84535 from bcdarwin/update-beluga 
beluga: 20180403 -> unstable-2020-03-11
 2020-04-19 22:53:50 -04:00
Ben Darwin
ad7b7367b6 beluga: 20180403 -> unstable-2020-03-11 2020-04-19 21:54:06 -04:00
Mario Rodas
f37c9226fc
lean: 3.8.0 -> 3.9.0 2020-04-18 04:20:00 -05:00
Matthew Bauer
97fc083fd4 giac: broken on 64-bit blas 2020-04-17 16:24:31 -05:00
Matthew Bauer
1c8aba8334 treewide: use blas and lapack 
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.

treewide: cleanup from blas/lapack changes

A few issues in the original treewide:

- can’t assume blas64 is a bool
- unused commented code
 2020-04-17 16:24:09 -05:00
worldofpeace
433ea74af1 nasc: fix build 2020-04-15 17:19:47 -04:00
AndersonTorres
3b91c3de8f gp2c: 0.0.11pl2 -> 0.0.11pl3 2020-04-15 00:45:28 -03:00
Benjamin Hipple
17a1bf5dbd
Merge pull request #85069 from r-ryantm/auto-update/ginac 
ginac: 1.7.8 -> 1.7.9
 2020-04-12 11:18:43 -04:00
R. RyanTM
9b5aad0644 ginac: 1.7.8 -> 1.7.9 2020-04-12 12:04:38 +00:00
R. RyanTM
3fcbc7545c verilator: 4.030 -> 4.032 2020-04-11 15:46:52 +00:00
Michael Reilly
84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
Mario Rodas
8e537ad391
lean: 3.7.2 -> 3.8.0 2020-04-09 10:40:00 -05:00
Matt Huszagh
fc66192b37 fparser: init at 4.5.1 2020-04-09 11:28:21 -07:00
Jonathan Ringer
3238302827 libpoly: fix src 2020-04-09 11:22:53 -07:00
R. RyanTM
f4a9fe36fa libpoly: 0.1.7 -> 0.1.8 2020-04-09 10:29:28 -07:00
Timo Kaufmann
b72fd98789
Merge pull request #84666 from jonringer/repofy-palp 
palp: correct metadata for repology
 2020-04-08 11:44:33 +00:00
Gabriel Ebner
e71c0d80a1
Merge pull request #84583 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.8.0 -> 3.8.0a
 2020-04-08 11:01:33 +02:00
Vincent Laporte
f4ff33cce6 alt-ergo: 2.3.1 → 2.3.2 2020-04-08 10:23:48 +02:00
Jonathan Ringer
f89b76d9db
palp: correct metadata for repology 2020-04-07 14:08:03 -07:00
R. RyanTM
67ea5a0081 qalculate-gtk: 3.8.0 -> 3.8.0a 2020-04-07 10:29:32 +00:00
Mario Rodas
c9ce292597
Merge pull request #84383 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.4 -> 4.5.6
 2020-04-05 20:03:05 -05:00
R. RyanTM
b43965986f gmsh: 4.5.4 -> 4.5.6 2020-04-05 19:28:16 +00:00
Vincent Laporte
d6a8d0ca5b coq_8_11: 8.11.0 → 8.11.1 2020-04-05 15:32:32 +02:00
Frederik Rietdijk
866c5aa090 Merge master into staging-next 2020-04-05 08:33:39 +02:00
Jan Tojnar
418628e162
dsview: fix build 
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
 2020-04-05 01:13:14 +02:00
Timo Kaufmann
02b1f2a2de
Merge pull request #83224 from shnarazk/cadical-pr 
cadical: init at 1.2.1
 2020-04-04 15:44:04 +00:00
Narazaki, Shuji
c5a12e33d2 cadical: init at 1.2.1 2020-04-05 00:22:36 +09:00
Jan Tojnar
08cf27e5d9
libsigrok4dsl: fix build 
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
 2020-04-04 10:50:34 +02:00
Dmitry Kalinkin
99a236b477
Merge pull request #83914 from cgevans/gwyddion-darwin 
gwyddion: support darwin
 2020-04-01 21:44:21 -04:00
Constantine Glen Evans
cacbbe92bf
gwyddion: add darwin support 
Gwyddion will build on Darwin, but gnome2.gtkglext is broken there,
and so I am disabling it as an optional dependency here when building
on Darwin.
 2020-04-01 17:50:36 -07:00
R. RyanTM
92c8881358 picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
Timo Kaufmann
83fd89945d
Merge pull request #79661 from luc65r/pkg/cemu 
cemu: init at 1.3
 2020-03-31 15:17:33 +00:00
R. RyanTM
3017e6989f deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
R. RyanTM
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 (#83839) 2020-03-31 00:39:00 -04:00
R. RyanTM
bd245a755f stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
Ryan Mulligan
d8c21cb4bc
Merge pull request #83746 from r-ryantm/auto-update/marvin 
marvin: 20.6.0 -> 20.9.0
 2020-03-30 06:14:11 -07:00
R. RyanTM
1d349b8512 marvin: 20.6.0 -> 20.9.0 2020-03-30 04:02:45 +00:00
luc65r
8edd400bfb
rofi-calc: init at 1.6 (#83136) 
Also:
* maintainers: add albakhamj
* maintainers: add luc65r
* rofi: add plugins argument to wrapper

Co-authored-by: Maciej Krüger <mkg20001@gmail.com>
 2020-03-30 01:18:56 +02:00
Maximilian Bosch
9e7c54325e
stellarium: 0.19.3 -> 0.20.0 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.0
 2020-03-29 17:56:35 +02:00
Jörg Thalheim
d04396da8b
Merge pull request #82852 from Mic92/cross-build-rust-package 
[WIP] buildRustPackage: enable strictDeps
 2020-03-29 14:07:07 +01:00
Guanpeng Xu
d2702c915f mathematica: 12.0.0 -> 12.1.0 2020-03-29 14:38:33 +02:00
Jörg Thalheim
e841dce44a
rink: fix strict deps build 2020-03-29 12:37:25 +01:00
Constantine Glen Evans
59fbc7acba gwyddion: 2.48 -> 2.55 (and add options) 
Gwyddion has a large number of optional dependencies. In this update,
those dependencies have been added with options set mostly to true,
and an option (default false) for working Python 2.7 support in the
program and in Python has been added. I have also added myself as a
maintainer as no maintainer is currently set.
 2020-03-27 10:56:00 -07:00
Ryan Mulligan
c669d2991b
Merge pull request #83464 from r-ryantm/auto-update/last 
last: 1047 -> 1060
 2020-03-27 07:34:18 -07:00
R. RyanTM
bd3fbef804 last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
Ryan Mulligan
8c5f9d0200
Merge pull request #83390 from r-ryantm/auto-update/seaview 
seaview: 5.0 -> 5.0.2
 2020-03-26 03:10:56 -07:00
R. RyanTM
4a3ea14b5b seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
Austin Seipp
517fd073fc
xcircuit: 3.9.73 -> 3.10.12, maintain 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 17:46:15 -05:00
Austin Seipp
765b2fd866
mcy: 2020.03.16 -> 2020.03.21 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 06:46:01 -05:00
Austin Seipp
4808bef486
symbiyosys: 2020.02.11 -> 2020.03.24 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-25 06:46:01 -05:00
Vincent Laporte
618bca7054 alt-ergo: 2.3.0 → 2.3.1 2020-03-24 20:43:06 -04:00
Mario Rodas
b2df6d541d
lean: 3.7.0 -> 3.7.2 2020-03-22 04:20:00 -05:00
Mario Rodas
baeb670ce2
Merge pull request #82610 from r-ryantm/auto-update/eagle 
eagle: 9.5.2 -> 9.6.0
 2020-03-20 06:21:30 -05:00
Vincent Laporte
8dddd8a07f ocamlPackages.camlp5: 7.10 → 7.11 2020-03-19 18:04:14 -07:00
Claudio Bley
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer (#82925) 
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
 2020-03-19 13:05:54 +00:00
Austin Seipp
2ef42e07fd
mcy: 2020.02.05 -> 2020.03.16 
Now with working web UI dashboard -- but no working GUI (yet!)

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:40 -05:00
Austin Seipp
5cd4fd5bc5
symbiyosys: 2020.02.08 -> 2020.02.11 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:40 -05:00
Austin Seipp
9b43cf3a00
yosys: 2020.02.25 -> 2020.03.16 
- Bump `abc-verifier` (2020.03.05)
  - Install `yosys-abc` symlink for tool compatbility
  - Various `yosys` expression cleanups

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-03-17 17:19:37 -05:00
Dmitry Kalinkin
ebe5f10794
kicad: don't build versions with 3d on Hydra 
The hydraPlatforms have to be set on the kicad package itself, that can be
checked using:

  echo ":p { inherit kicad kicad-small kicad-unstable; }" | nix repl ./pkgs/top-level/release.nix

This commit disables build of all kicad variants that require downloading
packages3d, which currently fail on hydra with the "Output limit exceeded"
status. This leaves Hydra with only building the kicad-small, which will allow
us to cache the build of kicad-base as well as all libraries except of
packages3d.
 2020-03-16 19:45:04 -04:00
Dmitry Kalinkin
68db99ad97 snakemake: 5.9.1 -> 5.10.0 2020-03-14 15:58:24 -07:00
R. RyanTM
bafbfc5a06 eagle: 9.5.2 -> 9.6.0 2020-03-14 20:19:26 +00:00
zimbatm
001be890f7 folding@home: 6.02 -> 7.5.1 
The v7 series is very different.

This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
 2020-03-14 13:01:26 -07:00
Frederik Rietdijk
5175c35a99
Merge pull request #81611 from r-ryantm/auto-update/R 
R: 3.6.2 -> 3.6.3
 2020-03-14 14:29:05 +01:00
Josef Kemetmüller
3a8d05747b qgroundcontrol: Fix build 
This silences some warnings to not run into "Log limit exceeded" on
hydra.
 2020-03-14 03:18:39 +00:00
Mario Rodas
c935567de6 lean: 3.6.1 -> 3.7.0 2020-03-14 01:32:58 +00:00
wucke13
c24b9a57c4 getdp: 3.0.4 -> 3.3.0 2020-03-13 04:10:20 +00:00
R. RyanTM
a58d091d8d verilator: 4.028 -> 4.030 2020-03-12 20:57:34 -05:00
Maximilian Bosch
76821e6f43
geogebra: 5-0-573-0 -> 5-0-574-0 2020-03-12 18:12:57 +01:00
Timo Kaufmann
ba589e24c9 sage: patch for pari 2.11.3 2020-03-12 12:24:41 +01:00
Timo Kaufmann
c4ab541443 pari: backport bug fix 
https://trac.sagemath.org/ticket/29313#comment:4
 2020-03-12 12:24:35 +01:00
xaverdh
5ac085c3cc
wxmaxima: 18.02.0 -> 20.02.4 (#82323) 
The commit description is 18.02.0 -> 20.02.4, because in the last version bump (1c6a193b3e), the version string was changed, but the hash was not.

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2020-03-11 12:07:53 -04:00
Timo Kaufmann
1a6b1fb32a symmetrica: add timokau to maintainers 2020-03-10 18:10:28 +01:00
Timo Kaufmann
0c875c28c6 symmetrica: 2.0 -> 3.0.1 
This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:

https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061

Regarding the licensing change:

7cf91b3800
 2020-03-10 18:10:25 +01:00
Timo Kaufmann
e05e219b31
Merge pull request #82240 from timokau/sage-docutils-0.15-fix 
sage: fix test suite with docutils 0.15
 2020-03-10 15:25:22 +00:00
Timo Kaufmann
7133577405 sage: fix test suite with docutils 0.15 
The better way to fix this would be to backport the upstream sphinx
patch:

faedcc48cc

Unfortunately it doesn't apply cleanly and isn't worth the effort
of backporting. Let's hope we can switch to python3 sage and the recent
sphinx version that comes with it before this becomes a problem.
 2020-03-10 13:15:41 +01:00
Timo Kaufmann
63ed2bf3c3
Merge pull request #81950 from r-ryantm/auto-update/pari 
pari: 2.11.2 -> 2.11.3
 2020-03-09 17:31:14 +00:00
Michael Raskin
bbab73266d
Merge pull request #80719 from mucaho/feature/clingcon_init 
clingcon: init at 3.3.0
 2020-03-09 07:42:38 +00:00
mucaho
202c2a8eff clingcon: init at 3.3.0 2020-03-08 19:21:55 +01:00
Maximilian Bosch
84f862ed91
Merge pull request #81796 from JohnAZoidberg/satallax-gcc9 
satallax: Fix build with GCC9
 2020-03-08 16:12:40 +01:00
Gabriel Ebner
d7a68e9bce
Merge pull request #82028 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.7.0 -> 3.8.0
 2020-03-08 13:31:00 +01:00
Frederik Rietdijk
0eb0ddc4db Merge staging-next into master 2020-03-08 08:11:01 +01:00
R. RyanTM
e6f5bb8dc4 qalculate-gtk: 3.7.0 -> 3.8.0 2020-03-08 00:14:22 +00:00
Vincent Laporte
dcfccdfc33
acgtk: 1.5.0 → 1.5.1 (#81539) 
Co-authored-by: Jon <jonringer@users.noreply.github.com>
 2020-03-07 09:56:18 +01:00
R. RyanTM
6528554396 pari: 2.11.2 -> 2.11.3 2020-03-07 02:43:40 +00:00
Gabriel Ebner
8428f5bb4a elan: v0.8.0 tag was force-pushed by upstream 2020-03-06 15:35:37 +01:00
Gabriel Ebner
70e5428d66 elan: 0.7.5 -> 0.8.0 2020-03-06 14:28:36 +01:00
Joachim Breitner
2d2a5a9b63
js_of_ocaml: 3.4.0 -> 3.5.2 (#75766) 
drive-by contributions, as I was playing around with this (it has better
support for the `num` library, it seems.)

js_of_ocaml: 3.4.0 -> 3.5.2
ocamlPackages.js_of_ocaml-ppx_deriving_json: use ppxlib-0.12.0
ocamlPackages.eliom: 6.8.0 → 6.10.1
ocamlPackages.ocsigen-toolkit: 2.2.0 → 2.5.0
ocamlPackages.ocsigen-start: 2.7.0 → 2.16.1

Co-authored-by: Vincent Laporte <Vincent.Laporte@gmail.com>
 2020-03-06 07:42:04 +01:00
Frederik Rietdijk
188c3a4d03 Merge staging-next into staging 2020-03-06 07:09:30 +01:00
Mario Rodas
7597bdd59b
Merge pull request #81783 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.2 -> 4.5.4
 2020-03-05 08:31:38 -05:00
Mario Rodas
1196a5c7a7
Merge pull request #81722 from r-ryantm/auto-update/workcraft 
workcraft: 3.2.5 -> 3.2.6
 2020-03-05 07:42:25 -05:00
Daniel Schaefer
bc56175034 satallax: Fix build with GCC9 2020-03-05 05:16:49 +01:00
R. RyanTM
9974067129 gmsh: 4.5.2 -> 4.5.4 2020-03-05 00:20:08 +00:00
R. RyanTM
adcdd7b0a7 gromacs: 2020 -> 2020.1 2020-03-04 23:10:39 +00:00
Jan Tojnar
1a44e325d2
Merge branch 'staging-next' into staging 2020-03-04 21:24:05 +01:00
R. RyanTM
86e6080daf workcraft: 3.2.5 -> 3.2.6 2020-03-04 13:41:09 +00:00