rstudio-server, rstudioServerWrapper: init at rstudio.version (1.4.1717)
Co-authored-by: Justin Bedo <cu@cua0.org> Co-authored-by: Jonathan Ringer <jonringer@users.noreply.github.com> Co-authored-by: Sandro <sandro.jaeckel@gmail.com> Co-authored-by: Benjamin Darwin <bcdarwin@gmail.com>
This commit is contained in:
cfhammill
Justin Bedo
parent
d3bc05b0f9
commit
fd51177e5c
@ -1,4 +1,5 @@
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{ lib
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, stdenv
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, mkDerivation
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, fetchurl
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, fetchpatch
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@ -30,6 +31,9 @@
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, nodejs
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, mkYarnModules
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, qmake
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, server ? false # build server version
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, sqlite
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, pam
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}:
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let
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@ -61,149 +65,165 @@ let
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panmirrorModules = mkYarnModules {
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inherit pname version;
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packageJSON = ./package.json;
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yarnLock = ./yarn.lock;
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yarnLock = ./yarn.lock;
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yarnNix = ./yarndeps.nix;
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};
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description = "Set of integrated tools for the R language";
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in
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mkDerivation rec {
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inherit pname version src RSTUDIO_VERSION_MAJOR RSTUDIO_VERSION_MINOR RSTUDIO_VERSION_PATCH;
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(if server then stdenv.mkDerivation else mkDerivation)
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(rec {
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inherit pname version src RSTUDIO_VERSION_MAJOR RSTUDIO_VERSION_MINOR RSTUDIO_VERSION_PATCH;
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nativeBuildInputs = [
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cmake
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unzip
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ant
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jdk
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makeWrapper
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pandoc
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nodejs
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copyDesktopItems
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];
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nativeBuildInputs = [
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cmake
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unzip
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ant
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jdk
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makeWrapper
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pandoc
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nodejs
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] ++ lib.optional (!server) [
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copyDesktopItems
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];
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buildInputs = [
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boost
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zlib
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openssl
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R
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qtbase
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qtxmlpatterns
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qtsensors
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qtwebengine
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qtwebchannel
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libuuid
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libyamlcpp
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soci
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postgresql
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];
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buildInputs = [
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boost
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zlib
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openssl
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R
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libuuid
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libyamlcpp
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soci
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postgresql
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] ++ (if server then [
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sqlite.dev
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pam
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] else [
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qtbase
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qtxmlpatterns
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qtsensors
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qtwebengine
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qtwebchannel
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]);
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cmakeFlags = [
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"-DRSTUDIO_TARGET=Desktop"
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"-DCMAKE_BUILD_TYPE=Release"
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"-DQT_QMAKE_EXECUTABLE=${qmake}/bin/qmake"
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"-DRSTUDIO_USE_SYSTEM_SOCI=ON"
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"-DRSTUDIO_USE_SYSTEM_BOOST=ON"
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"-DRSTUDIO_USE_SYSTEM_YAML_CPP=ON"
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"-DPANDOC_VERSION=${pandoc.version}"
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"-DCMAKE_INSTALL_PREFIX=${placeholder "out"}/lib/rstudio"
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];
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cmakeFlags = [
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"-DRSTUDIO_TARGET=${if server then "Server" else "Desktop"}"
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"-DCMAKE_BUILD_TYPE=Release"
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"-DRSTUDIO_USE_SYSTEM_SOCI=ON"
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"-DRSTUDIO_USE_SYSTEM_BOOST=ON"
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"-DRSTUDIO_USE_SYSTEM_YAML_CPP=ON"
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"-DPANDOC_VERSION=${pandoc.version}"
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"-DCMAKE_INSTALL_PREFIX=${placeholder "out"}/lib/rstudio"
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] ++ lib.optional (!server) [
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"-DQT_QMAKE_EXECUTABLE=${qmake}/bin/qmake"
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];
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# Hack RStudio to only use the input R and provided libclang.
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patches = [
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./r-location.patch
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./clang-location.patch
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# postFetch doesn't work with this | error: unexpected end-of-file
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# replacing /usr/bin/node is done in postPatch
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# https://src.fedoraproject.org/rpms/rstudio/tree/rawhide
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(fetchpatch {
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name = "system-node.patch";
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url = "https://src.fedoraproject.org/rpms/rstudio/raw/5bda2e290c9e72305582f2011040938d3e356906/f/0004-use-system-node.patch";
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sha256 = "sha256-P1Y07RB/ceFNa749nyBUWSE41eiiZgt43zVcmahvfZM=";
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})
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];
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# Hack RStudio to only use the input R and provided libclang.
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patches = [
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./r-location.patch
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./clang-location.patch
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# postFetch doesn't work with this | error: unexpected end-of-file
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# replacing /usr/bin/node is done in postPatch
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# https://src.fedoraproject.org/rpms/rstudio/tree/rawhide
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(fetchpatch {
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name = "system-node.patch";
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url = "https://src.fedoraproject.org/rpms/rstudio/raw/5bda2e290c9e72305582f2011040938d3e356906/f/0004-use-system-node.patch";
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sha256 = "sha256-P1Y07RB/ceFNa749nyBUWSE41eiiZgt43zVcmahvfZM=";
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})
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];
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postPatch = ''
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substituteInPlace src/cpp/core/r_util/REnvironmentPosix.cpp --replace '@R@' ${R}
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postPatch = ''
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substituteInPlace src/cpp/core/r_util/REnvironmentPosix.cpp --replace '@R@' ${R}
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substituteInPlace src/cpp/CMakeLists.txt \
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--replace 'SOCI_LIBRARY_DIR "/usr/lib"' 'SOCI_LIBRARY_DIR "${soci}/lib"'
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substituteInPlace src/cpp/CMakeLists.txt \
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--replace 'SOCI_LIBRARY_DIR "/usr/lib"' 'SOCI_LIBRARY_DIR "${soci}/lib"'
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substituteInPlace src/gwt/build.xml \
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--replace '/usr/bin/node' '${nodejs}/bin/node'
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substituteInPlace src/gwt/build.xml \
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--replace '/usr/bin/node' '${nodejs}/bin/node'
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substituteInPlace src/cpp/core/libclang/LibClang.cpp \
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--replace '@libclang@' ${llvmPackages.libclang.lib} \
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--replace '@libclang.so@' ${llvmPackages.libclang.lib}/lib/libclang.so
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substituteInPlace src/cpp/core/libclang/LibClang.cpp \
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--replace '@libclang@' ${llvmPackages.libclang.lib} \
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--replace '@libclang.so@' ${llvmPackages.libclang.lib}/lib/libclang.so
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substituteInPlace src/cpp/session/include/session/SessionConstants.hpp \
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--replace "bin/pandoc" "${pandoc}/bin/pandoc"
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'';
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substituteInPlace src/cpp/session/include/session/SessionConstants.hpp \
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--replace "bin/pandoc" "${pandoc}/bin/pandoc"
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'';
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hunspellDictionaries = with lib; filter isDerivation (unique (attrValues hunspellDicts));
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# These dicts contain identically-named dict files, so we only keep the
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# -large versions in case of clashes
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largeDicts = with lib; filter (d: hasInfix "-large-wordlist" d) hunspellDictionaries;
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otherDicts = with lib; filter
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(d: !(hasAttr "dictFileName" d &&
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elem d.dictFileName (map (d: d.dictFileName) largeDicts)))
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hunspellDictionaries;
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dictionaries = largeDicts ++ otherDicts;
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hunspellDictionaries = with lib; filter isDerivation (unique (attrValues hunspellDicts));
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# These dicts contain identically-named dict files, so we only keep the
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# -large versions in case of clashes
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largeDicts = with lib; filter (d: hasInfix "-large-wordlist" d) hunspellDictionaries;
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otherDicts = with lib; filter
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(d: !(hasAttr "dictFileName" d &&
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elem d.dictFileName (map (d: d.dictFileName) largeDicts)))
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hunspellDictionaries;
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dictionaries = largeDicts ++ otherDicts;
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preConfigure = ''
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mkdir dependencies/dictionaries
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for dict in ${builtins.concatStringsSep " " dictionaries}; do
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for i in "$dict/share/hunspell/"*; do
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ln -s $i dependencies/dictionaries/
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preConfigure = ''
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mkdir dependencies/dictionaries
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for dict in ${builtins.concatStringsSep " " dictionaries}; do
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for i in "$dict/share/hunspell/"*; do
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ln -s $i dependencies/dictionaries/
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done
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done
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done
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unzip -q ${mathJaxSrc} -d dependencies/mathjax-27
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unzip -q ${mathJaxSrc} -d dependencies/mathjax-27
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mkdir -p dependencies/pandoc/${pandoc.version}
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cp ${pandoc}/bin/pandoc dependencies/pandoc/${pandoc.version}/pandoc
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mkdir -p dependencies/pandoc/${pandoc.version}
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cp ${pandoc}/bin/pandoc dependencies/pandoc/${pandoc.version}/pandoc
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cp -r ${rsconnectSrc} dependencies/rsconnect
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( cd dependencies && ${R}/bin/R CMD build -d --no-build-vignettes rsconnect )
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cp -r ${rsconnectSrc} dependencies/rsconnect
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( cd dependencies && ${R}/bin/R CMD build -d --no-build-vignettes rsconnect )
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cp -r "${panmirrorModules}" src/gwt/panmirror/src/editor/node_modules
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'';
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cp -r "${panmirrorModules}" src/gwt/panmirror/src/editor/node_modules
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'';
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postInstall = ''
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mkdir -p $out/share/icons/hicolor/48x48/apps $out/bin
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ln $out/lib/rstudio/rstudio.png $out/share/icons/hicolor/48x48/apps
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postInstall = ''
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mkdir -p $out/bin $out/share
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for f in {diagnostics,rpostback,rstudio}; do
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ln -s $out/lib/rstudio/bin/$f $out/bin
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done
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${lib.optionalString (!server) ''
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mkdir -p $out/share/icons/hicolor/48x48/apps
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ln $out/lib/rstudio/rstudio.png $out/share/icons/hicolor/48x48/apps
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''}
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for f in .gitignore .Rbuildignore LICENSE README; do
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find . -name $f -delete
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done
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rm -r $out/lib/rstudio/{INSTALL,COPYING,NOTICE,README.md,SOURCE,VERSION}
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rm -r $out/lib/rstudio/bin/{pandoc/pandoc,pandoc}
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'';
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for f in {${if server
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then "crash-handler-proxy,postback,r-ldpath,rpostback,rserver,rserver-pam,rsession,rstudio-server"
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else "diagnostics,rpostback,rstudio"}}; do
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ln -s $out/lib/rstudio/bin/$f $out/bin
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done
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qtWrapperArgs = [
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"--suffix PATH : ${lib.makeBinPath [ gnumake ]}"
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];
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for f in .gitignore .Rbuildignore LICENSE README; do
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find . -name $f -delete
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done
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rm -r $out/lib/rstudio/{INSTALL,COPYING,NOTICE,README.md,SOURCE,VERSION}
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rm -r $out/lib/rstudio/bin/{pandoc/pandoc,pandoc}
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'';
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desktopItems = [
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(makeDesktopItem {
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name = "${pname}";
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exec = "rstudio %F";
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icon = "rstudio";
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desktopName = "RStudio";
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genericName = "IDE";
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comment = meta.description;
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categories = "Development;";
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mimeType = "text/x-r-source;text/x-r;text/x-R;text/x-r-doc;text/x-r-sweave;text/x-r-markdown;text/x-r-html;text/x-r-presentation;application/x-r-data;application/x-r-project;text/x-r-history;text/x-r-profile;text/x-tex;text/x-markdown;text/html;text/css;text/javascript;text/x-chdr;text/x-csrc;text/x-c++hdr;text/x-c++src;";
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})
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];
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meta = with lib; {
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inherit description;
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homepage = "https://www.rstudio.com/";
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license = licenses.agpl3Only;
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maintainers = with maintainers; [ ciil cfhammill ];
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platforms = platforms.linux;
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};
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meta = with lib; {
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description = "Set of integrated tools for the R language";
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homepage = "https://www.rstudio.com/";
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license = licenses.agpl3Only;
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maintainers = with maintainers; [ ciil ];
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platforms = platforms.linux;
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};
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}
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passthru = { inherit server; };
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} // lib.optionalAttrs (!server) {
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qtWrapperArgs = [
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"--suffix PATH : ${lib.makeBinPath [ gnumake ]}"
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];
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desktopItems = [
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(makeDesktopItem {
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name = pname;
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exec = "rstudio %F";
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icon = "rstudio";
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desktopName = "RStudio";
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genericName = "IDE";
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comment = description;
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categories = "Development;";
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mimeType = "text/x-r-source;text/x-r;text/x-R;text/x-r-doc;text/x-r-sweave;text/x-r-markdown;text/x-r-html;text/x-r-presentation;application/x-r-data;application/x-r-project;text/x-r-history;text/x-r-profile;text/x-tex;text/x-markdown;text/html;text/css;text/javascript;text/x-chdr;text/x-csrc;text/x-c++hdr;text/x-c++src;";
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})
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];
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})
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@ -1,16 +1,23 @@
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{ lib, runCommand, R, rstudio, wrapQtAppsHook, recommendedPackages, packages, qtbase }:
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{ lib
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, runCommand
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, R
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, rstudio
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, makeWrapper
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, wrapQtAppsHook
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, recommendedPackages
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, packages
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, fontconfig
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}:
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let
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qtVersion = with lib.versions; "${major qtbase.version}.${minor qtbase.version}";
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in
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runCommand (rstudio.name + "-wrapper") {
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runCommand (rstudio.name + "-wrapper")
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{
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preferLocalBuild = true;
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allowSubstitutes = false;
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nativeBuildInputs = [wrapQtAppsHook];
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nativeBuildInputs = [ (if rstudio.server then makeWrapper else wrapQtAppsHook) ];
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dontWrapQtApps = true;
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buildInputs = [R rstudio] ++ recommendedPackages ++ packages;
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buildInputs = [ R rstudio ] ++ recommendedPackages ++ packages;
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# rWrapper points R to a specific set of packages by using a wrapper
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# (as in https://nixos.org/nixpkgs/manual/#r-packages) which sets
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@ -22,14 +29,27 @@ runCommand (rstudio.name + "-wrapper") {
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# uses R_PROFILE_USER to load this code at startup in RStudio.
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fixLibsR = "fix_libs.R";
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}
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''
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mkdir $out
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ln -s ${rstudio}/share $out
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echo "# Autogenerated by wrapper-rstudio.nix from R_LIBS_SITE" > $out/$fixLibsR
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echo -n ".libPaths(c(.libPaths(), \"" >> $out/$fixLibsR
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echo -n $R_LIBS_SITE | sed -e 's/:/", "/g' >> $out/$fixLibsR
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echo -n "\"))" >> $out/$fixLibsR
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echo >> $out/$fixLibsR
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makeQtWrapper ${rstudio}/bin/rstudio $out/bin/rstudio \
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--set R_PROFILE_USER $out/$fixLibsR
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''
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(
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''
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mkdir -p $out/bin
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ln -s ${rstudio}/share $out
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echo "# Autogenerated by wrapper-rstudio.nix from R_LIBS_SITE" > $out/$fixLibsR
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echo -n ".libPaths(c(.libPaths(), \"" >> $out/$fixLibsR
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echo -n $R_LIBS_SITE | sed -e 's/:/", "/g' >> $out/$fixLibsR
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echo -n "\"))" >> $out/$fixLibsR
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echo >> $out/$fixLibsR
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'' +
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(if
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rstudio.server then ''
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makeWrapper ${rstudio}/bin/rsession $out/bin/rsession \
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--set R_PROFILE_USER $out/$fixLibsR --set FONTCONFIG_FILE ${fontconfig.out}/etc/fonts/fonts.conf
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makeWrapper ${rstudio}/bin/rserver $out/bin/rserver \
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--add-flags --rsession-path=$out/bin/rsession
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''
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else
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''
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makeQtWrapper ${rstudio}/bin/rstudio $out/bin/rstudio \
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--set R_PROFILE_USER $out/$fixLibsR
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'')
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)
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@ -20754,6 +20754,8 @@ with pkgs;
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packages = [];
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};
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rstudioServerWrapper = rstudioWrapper.override { rstudio = rstudio-server; };
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rPackages = dontRecurseIntoAttrs (callPackage ../development/r-modules {
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overrides = (config.rPackageOverrides or (_: {})) pkgs;
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});
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@ -28382,6 +28384,8 @@ with pkgs;
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jdk = jdk8;
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};
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rstudio-server = rstudio.override { server = true; };
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rsync = callPackage ../applications/networking/sync/rsync (config.rsync or {});
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rrsync = callPackage ../applications/networking/sync/rsync/rrsync.nix {};
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