R: fix some modules with configure-shebang-error
- xml2: fix configure script
- rversion, devtools: mark as unbroken
dependency R-curl was fixed in 513e31185b
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@ -999,7 +999,6 @@ let
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"DESeq" # broken build
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"DESP" # broken build
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"destiny" # depends on broken package VIM-4.3.0
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"devtools" # broken build
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"DEXSeq" # depends on broken package Rsamtools-1.21.8
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"dexus" # broken build
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"DFP" # broken build
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@ -1573,7 +1572,6 @@ let
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"npIntFactRep" # depends on broken package nlopt-2.4.2
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"NSM3" # broken build
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"nucleR" # depends on broken package Rsamtools-1.21.8
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"oai" # depends on broken package r-xml2-0.1.2
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"OCplus" # broken build
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"OGSA" # broken build
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"oligoClasses" # depends on broken package affyio-1.37.0
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@ -1934,7 +1932,6 @@ let
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"RUVnormalize" # Build Is Broken
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"RUVSeq" # depends on broken package Rsamtools-1.21.8
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"RVAideMemoire" # depends on broken package nlopt-2.4.2
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"rversions" # broken build
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"rvest" # broken build
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"RVFam" # depends on broken package nlopt-2.4.2
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"RVideoPoker" # depends on broken package rpanel-1.1-3
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@ -2153,7 +2150,6 @@ let
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"XDE" # broken build
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"x_ent" # broken build
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"xergm" # depends on broken package nlopt-2.4.2
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"xml2" # broken build
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"xps" # build is broken
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"XVector" # broken build
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"yaqcaffy" # depends on broken package affyio-1.37.0
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@ -2177,7 +2173,10 @@ let
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});
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xml2 = old.xml2.overrideDerivation (attrs: {
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preConfigure = "export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2";
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preConfigure = ''
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export LIBXML_INCDIR=${pkgs.libxml2}/include/libxml2
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patchShebangs configure
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'';
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});
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curl = old.curl.overrideDerivation (attrs: {
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