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Merge pull request #91647 from jbedo/whisper

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whisper: init at 2.0.1
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Lassulus 2020-08-21 18:09:35 +02:00 committed by GitHub
commit de25713886
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2 changed files with 36 additions and 0 deletions
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34
pkgs/applications/science/biology/whisper/default.nix Normal file
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@ -0,0 +1,34 @@
{ stdenv, fetchFromGitHub, fetchurl }:
stdenv.mkDerivation rec {
pname = "whisper";
version = "2.0.1";
src = fetchFromGitHub {
owner = "refresh-bio";
repo = pname;
rev = "v${version}";
sha256 = "0wpx1w1mar2d6zq2v14vy6nn896ds1n3zshxhhrrj5d528504iyw";
};
preConfigure = ''
cd src
# disable default static linking
sed -i 's/ -static / /' makefile
'';
installPhase = ''
runHook preInstall
install -Dt $out/bin whisper whisper-index
runHook postInstall
'';
meta = with stdenv.lib; {
description = "Short read sequence mapper";
license = licenses.gpl3;
homepage = "https://github.com/refresh-bio/whisper";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.x86_64;
};
}

2
pkgs/top-level/all-packages.nix
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@ -25464,6 +25464,8 @@ in
varscan = callPackage ../applications/science/biology/varscan { };
whisper = callPackage ../applications/science/biology/whisper { };
hmmer = callPackage ../applications/science/biology/hmmer { };
bwa = callPackage ../applications/science/biology/bwa { };