r-modules: update list of broken builds to avoid Hydra errors
This commit is contained in:
Peter Simons
parent
a5c168db4e
commit
d7e6a46770
@ -764,28 +764,37 @@ let
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"backShift" # broken build
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"BAGS" # build is broken
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"ballgown" # depends on broken package Rsamtools-1.21.8
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"bamdit"
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"bamsignals" # build is broken
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"BANOVA"
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"bapred" # depends on broken package r-lme4-1.1-9
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"bartMachine" # depends on broken package nlopt-2.4.2
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"Basic4Cseq" # depends on broken package Rsamtools-1.21.8
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"bayescount"
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"bayesDem" # depends on broken package nlopt-2.4.2
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"bayesLife" # depends on broken package nlopt-2.4.2
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"BayesMed"
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"bayesmix"
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"BayesPeak" # broken build
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"bayesPop" # depends on broken package nlopt-2.4.2
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"Bayesthresh" # depends on broken package nlopt-2.4.2
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"bayou" # broken build
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"baySeq" # broken build
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"BaySIC"
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"BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18
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"BBRecapture" # depends on broken package nlopt-2.4.2
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"BCA" # depends on broken package nlopt-2.4.2
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"BcDiag" # broken build
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"BCRANK" # broken build
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"bcrypt"
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"beadarray" # broken build
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"beadarrayFilter" # broken build
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"beadarrayMSV" # broken build
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"beadarraySNP" # broken build
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"BEAT" # depends on broken package Rsamtools-1.21.8
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"BEDMatrix" # broken build
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"bedr" # broken build
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"BEST"
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"betr" # broken build
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"bgmm" # depends on broken package nlopt-2.4.2
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"bgx" # depends on broken package affyio-1.37.0
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@ -825,9 +834,11 @@ let
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"blme" # depends on broken package nlopt-2.4.2
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"bmd" # depends on broken package nlopt-2.4.2
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"bmem" # depends on broken package nlopt-2.4.2
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"bmeta" # depends on broken package r-R2jags-0.5-7
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"BMhyd" # broken build
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"bnclassify" # broken build
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"bootnet" # depends on broken package nlopt-2.4.2
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"boral"
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"boss" # depends on broken package nlopt-2.4.2
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"BradleyTerry2" # depends on broken package nlopt-2.4.2
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"BrailleR" # broken build
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@ -839,6 +850,7 @@ let
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"BRugs" # build is broken
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"BSgenome" # depends on broken package Rsamtools-1.21.8
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"bsseq" # broken build
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"BTSPAS"
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"BubbleTree" # depends on broken package r-biovizBase-1.17.2
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"bumphunter" # depends on broken package Rsamtools-1.21.8
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"CADFtest" # depends on broken package nlopt-2.4.2
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@ -863,6 +875,7 @@ let
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"categoryCompare" # depends on broken package Category-2.35.1
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"Causata" # broken build
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"CCpop" # depends on broken package nlopt-2.4.2
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"CCTpack"
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"cdcfluview" # broken build
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"cellHTS2" # depends on broken package Category-2.35.1
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"cellHTS" # broken build
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@ -893,6 +906,7 @@ let
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"chromDraw" # broken build
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"ChromHeatMap" # depends on broken package Rsamtools-1.21.8
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"classGraph" # broken build
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"classify"
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"ClassifyR" # broken build
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"cleanUpdTSeq" # depends on broken package Rsamtools-1.21.8
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"cleaver" # broken build
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@ -957,6 +971,7 @@ let
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"CRISPRseek" # depends on broken package Rsamtools-1.21.8
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"crlmm" # depends on broken package affyio-1.37.0
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"crmn" # broken build
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"crmPack" # depends on broken package r-rjags-4-4
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"Crossover" # Build Is Broken
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"CrypticIBDcheck" # depends on broken package nlopt-2.4.2
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"CSAR" # broken build
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@ -979,7 +994,9 @@ let
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"dbConnect" # broken build
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"DBKGrad" # depends on broken package rpanel-1.1-3
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"dcGOR" # broken build
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"dcmle"
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"ddCt" # broken build
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"DDD" # depends on broken package r-phytools-0.5-00
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"ddgraph" # broken build
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"ddst" # broken build
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"DECIPHER" # broken build
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@ -1036,6 +1053,7 @@ let
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"dyebias" # broken build
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"dynlm" # depends on broken package nlopt-2.4.2
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"easyanova" # depends on broken package nlopt-2.4.2
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"EasyMARK"
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"easyRNASeq" # depends on broken package Rsamtools-1.21.8
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"EBarrays" # broken build
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"EBcoexpress" # broken build
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@ -1101,6 +1119,7 @@ let
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"FIACH" # broken build
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"FindMyFriends" # broken build
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"FISHalyseR" # broken build
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"fishmethods" # depends on broken package r-lme4-1.1-10
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"flagme" # depends on broken package mzR-2.3.1
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"flipflop" # broken build
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"flowBeads" # broken build
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@ -1112,6 +1131,7 @@ let
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"flowClust" # broken build
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"flowCore" # broken build
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"flowDensity" # depends on broken package nlopt-2.4.2
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"flowDiv" # depends on broken package r-flowCore-1.35.11
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"flowFit" # broken build
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"flowFP" # broken build
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"flowMatch" # broken build
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@ -1142,6 +1162,7 @@ let
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"fulltext" # broken build
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"FunciSNP" # depends on broken package snpStats-1.19.0
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"FunctionalNetworks" # Build Is Broken
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"funcy" # depends on broken package r-car-2.1-0
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"fxregime" # depends on broken package nlopt-2.4.2
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"gaga" # broken build
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"gage" # broken build
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@ -1156,6 +1177,8 @@ let
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"gcmr" # depends on broken package nlopt-2.4.2
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"gcrma" # depends on broken package affyio-1.37.0
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"GDAtools" # depends on broken package nlopt-2.4.2
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"gdtools" # broken build
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"gemtc"
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"GeneAnswers" # broken build
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"GENE_E" # depends on broken package rhdf5-2.13.1
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"GeneExpressionSignature" # depends on broken package annaffy-1.41.1
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@ -1194,6 +1217,7 @@ let
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"GEOquery" # broken build
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"GEOsearch" # broken build
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"GEOsubmission" # depends on broken package affyio-1.37.0
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"GERGM"
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"gespeR" # depends on broken package Category-2.35.1
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"GEWIST" # depends on broken package nlopt-2.4.2
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"GExMap" # broken build
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@ -1210,6 +1234,7 @@ let
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"gmapR" # depends on broken package Rsamtools-1.21.8
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"gmatrix" # depends on broken package cudatoolkit-5.5.22
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"gMCP" # build is broken
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"gmum_r" # broken build
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"GOexpress" # broken build
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"GOFunction" # build is broken
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"GOGANPA" # depends on broken package WGCNA-1.47
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@ -1219,6 +1244,7 @@ let
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"GOSemSim" # Build Is Broken
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"goseq" # build is broken
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"GOSim" # depends on broken package topGO-2.21.0
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"Goslate" # depends on broken package r-PythonInR-0.1-2
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"GOstats" # depends on broken package AnnotationForge-1.11.3
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"GOTHiC" # depends on broken package Rsamtools-1.21.8
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"goTools" # build is broken
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@ -1270,6 +1296,7 @@ let
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"HEM" # broken build
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"heplots" # depends on broken package nlopt-2.4.2
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"hiAnnotator" # depends on broken package Rsamtools-1.21.8
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"HiCfeat" # depends on broken package r-GenomeInfoDb-1.5.16
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"HiDimMaxStable" # broken build
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"hierGWAS"
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"HierO" # Build Is Broken
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@ -1283,6 +1310,7 @@ let
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"HiTC" # depends on broken package Rsamtools-1.21.8
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"HLMdiag" # depends on broken package nlopt-2.4.2
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"HMMcopy" # broken build
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"homomorpheR" # broken build
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"hopach" # broken build
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"hpcwld" # broken build
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"hpoPlot" # broken build
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@ -1340,11 +1368,14 @@ let
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"IsoGene" # depends on broken package affyio-1.37.0
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"IsoGeneGUI" # depends on broken package affyio-1.37.0
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"ITALICS" # depends on broken package oligo-1.33.0
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"ITEMAN" # depends on broken package r-car-2.1-0
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"iteRates" # broken build
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"iterativeBMA" # broken build
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"iterpc" # broken build
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"IUPS"
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"IVAS" # depends on broken package nlopt-2.4.2
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"ivpack" # depends on broken package nlopt-2.4.2
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"jagsUI"
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"JAGUAR" # depends on broken package nlopt-2.4.2
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"jetset"
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"jmosaics" # broken build
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@ -1362,6 +1393,8 @@ let
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"ktspair" # broken build
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"kza" # broken build
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"kzft" # broken build
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"LANDD" # depends on broken package r-GOSemSim-1.27.4
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"LaplaceDeconv" # depends on broken package r-orthopolynom-1.0-5
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"lapmix" # broken build
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"lawn" # depends on broken package V8-0.6
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"ldamatch" # broken build
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@ -1373,9 +1406,12 @@ let
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"lessR" # depends on broken package nlopt-2.4.2
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"lfe" # build is broken
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"lgcp" # depends on broken package rpanel-1.1-3
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"Libra" # broken build
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"limmaGUI" # depends on broken package affyio-1.37.0
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"LinRegInteractive" # depends on broken package rpanel-1.1-3
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"LiquidAssociation" # build is broken
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"lira"
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"littler" # broken build
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"lmdme" # build is broken
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"lme4" # depends on broken package nlopt-2.4.2
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"LMERConvenienceFunctions" # depends on broken package nlopt-2.4.2
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@ -1383,6 +1419,7 @@ let
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"LMGene" # depends on broken package affyio-1.37.0
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"lmSupport" # depends on broken package nlopt-2.4.2
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"LogisticDx" # depends on broken package nlopt-2.4.2
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"LOGIT" # depends on broken package r-caret-6.0-58
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"logitT" # depends on broken package affyio-1.37.0
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"LOLA" # broken build
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"longpower" # depends on broken package nlopt-2.4.2
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@ -1395,6 +1432,7 @@ let
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"M3D" # depends on broken package Rsamtools-1.21.8
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"maanova" # broken build
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"macat" # broken build
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"maGUI" # depends on broken package r-affy-1.47.1
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"maigesPack" # broken build
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"MAIT" # depends on broken package nlopt-2.4.2
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"makecdfenv" # depends on broken package affyio-1.37.0
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@ -1441,8 +1479,10 @@ let
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"metagene" # depends on broken package Rsamtools-1.21.8
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"metagenomeSeq" # broken build
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"MetaLandSim" # broken build
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"metamisc"
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"metaMix" # build is broken
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"metaMS" # depends on broken package mzR-2.3.1
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"MetaPath" # depends on broken package r-Biobase-2.29.1
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"metaplus" # depends on broken package nlopt-2.4.2
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"metaSEM" # depends on broken package OpenMx-2.2.4
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"metaSeq" # broken build
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@ -1489,6 +1529,7 @@ let
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"mixlm" # depends on broken package nlopt-2.4.2
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"MixMAP" # depends on broken package nlopt-2.4.2
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"MLInterfaces" # broken build
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"mlma" # depends on broken package r-lme4-1.1-10
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"mlmRev" # depends on broken package nlopt-2.4.2
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"MLP" # depends on broken package affyio-1.37.0
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"MLSeq" # depends on broken package nlopt-2.4.2
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@ -1500,10 +1541,13 @@ let
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"mmnet" # broken build
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"MmPalateMiRNA" # depends on broken package affyio-1.37.0
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"mogsa" # broken build
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"molaR" # depends on broken package r-geomorph-2.1.7-1
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"mongolite" # build is broken
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"monocle" # build is broken
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"monogeneaGM" # broken build
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"MonoPhy" # depends on broken package r-phytools-0.5-00
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"MoPS" # broken build
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"morse"
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"mosaic" # depends on broken package nlopt-2.4.2
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"mosaics" # broken build
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"motifbreakR" # depends on broken package r-BSgenome-1.37.5
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@ -1562,6 +1606,7 @@ let
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"NGScopy"
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"nhanesA" # broken build
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"NHPoisson" # depends on broken package nlopt-2.4.2
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"NIPTeR" # depends on broken package r-Rsamtools-1.21.18
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"nloptr" # depends on broken package nlopt-2.4.2
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"nlsem" # broken build
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"nlts" # broken build
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@ -1587,6 +1632,7 @@ let
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"opencpu" # broken build
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"openCyto" # depends on broken package ncdfFlow-2.15.2
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"OpenMx" # build is broken
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"openssl"
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"OperaMate" # depends on broken package Category-2.35.1
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"oposSOM" # broken build
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"optBiomarker" # depends on broken package rpanel-1.1-3
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@ -1639,6 +1685,7 @@ let
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"pcalg" # broken build
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"pcaMethods" # broken build
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"PCGSE" # broken build
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"pcnetmeta"
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"pcot2" # broken build
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"PCpheno" # depends on broken package Category-2.35.1
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"PCS" # broken build
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@ -1666,6 +1713,7 @@ let
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"phytools" # broken build
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"piano" # broken build
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"PICS" # depends on broken package Rsamtools-1.21.8
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"piecewiseSEM" # depends on broken package r-lme4-1.1-10
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"PING" # depends on broken package Rsamtools-1.21.8
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"pkgDepTools" # broken build
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"plateCore" # depends on broken package ncdfFlow-2.15.2
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@ -1693,6 +1741,8 @@ let
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"PREDA" # broken build
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"predictionet" # broken build
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"predictmeans" # depends on broken package nlopt-2.4.2
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"preprocomb" # depends on broken package r-caret-6.0-58
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"prevalence"
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"pRF" # broken build
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"prLogistic" # depends on broken package nlopt-2.4.2
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"proBAMr" # depends on broken package Rsamtools-1.21.8
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@ -1713,8 +1763,10 @@ let
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"PSICQUIC" # broken build
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"ptw" # depends on broken nloptr-1.0.4
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"puma" # depends on broken package affyio-1.37.0
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"PurBayes"
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"purge" # depends on broken package r-lme4-1.1-9
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"pvac" # depends on broken package affyio-1.37.0
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"PVAClone"
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"pvca" # depends on broken package nlopt-2.4.2
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"Pviz" # depends on broken package Rsamtools-1.21.8
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"PWMEnrich" # broken build
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@ -1739,6 +1791,7 @@ let
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"QuasiSeq" # broken build
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"QuasR" # depends on broken package Rsamtools-1.21.8
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"qusage" # broken build
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"R2jags"
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"R2STATS" # depends on broken package nlopt-2.4.2
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"R3CPET" # depends on broken package Rsamtools-1.21.8
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"r3Cseq" # depends on broken package Rsamtools-1.21.8
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@ -1769,6 +1822,7 @@ let
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"rcellminer" # broken build
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"rCGH" # depends on broken package r-affy-1.47.1
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"Rchemcpp" # depends on broken package ChemmineR-2.21.7
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"rchess" # depends on broken package r-V8-0.9
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"RchyOptimyx" # broken build
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"Rcmdr" # depends on broken package nlopt-2.4.2
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"RcmdrMisc" # depends on broken package nlopt-2.4.2
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@ -1781,6 +1835,7 @@ let
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"RcmdrPlugin_EBM" # depends on broken package nlopt-2.4.2
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"RcmdrPlugin_EcoVirtual" # depends on broken package nlopt-2.4.2
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"RcmdrPlugin_epack" # depends on broken package nlopt-2.4.2
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"RcmdrPlugin_Export" # depends on broken package r-Rcmdr-2.2-3
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"RcmdrPlugin_EZR" # depends on broken package nlopt-2.4.2
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"RcmdrPlugin_FactoMineR" # depends on broken package nlopt-2.4.2
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"RcmdrPlugin_HH" # depends on broken package nlopt-2.4.2
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@ -1859,6 +1914,7 @@ let
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"RIPSeeker" # depends on broken package Rsamtools-1.21.8
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"Risa" # depends on broken package affyio-1.37.0
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"rjade" # depends on broken package V8-0.6
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"rjags"
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"rJPSGCS" # build is broken
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"rLindo" # build is broken
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"RLRsim" # depends on broken package r-lme4-1.1-9
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@ -1878,6 +1934,7 @@ let
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"RnaSeqSampleSize" # Build Is Broken
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"RnavGraph" # build is broken
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"RnBeads" # depends on broken package Rsamtools-1.21.8
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"rnetcarto" # broken build
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"Rnits" # depends on broken package affyio-1.37.0
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"rNOMADS" # broken build
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"roar" # depends on broken package Rsamtools-1.21.8
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@ -1904,6 +1961,7 @@ let
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"rqubic" # broken build
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"rr" # depends on broken package nlopt-2.4.2
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"rRDP" # broken build
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"RRreg" # depends on broken package r-lme4-1.1-10
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"Rsamtools" # Build Is Broken
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"RSAP" # build is broken
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"rsbml" # build is broken
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@ -1911,6 +1969,7 @@ let
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"RSDA" # depends on broken package nlopt-2.4.2
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"RSeed" # broken build
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"rSFFreader" # depends on broken package Rsamtools-1.21.8
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"Rsomoclu"
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"RStoolbox" # depends on broken package r-caret-6.0-52
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"Rsubread" # Build Is Broken
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"RSVSim" # depends on broken package Rsamtools-1.21.8
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@ -1978,9 +2037,12 @@ let
|
||||
"SeqVarTools" # depends on broken package Rsamtools-1.21.8
|
||||
"SGSeq" # depends on broken package Rsamtools-1.21.8
|
||||
"SharpeR" # broken build
|
||||
"sharx"
|
||||
"shinyMethyl" # depends on broken package Rsamtools-1.21.8
|
||||
"shinyTANDEM" # depends on broken package rTANDEM-1.9.0
|
||||
"ShortRead" # depends on broken package Rsamtools-1.21.8
|
||||
"Shrinkage" # depends on broken package r-multtest-2.25.2
|
||||
"SIBER"
|
||||
"SID" # broken build
|
||||
"sigaR" # broken build
|
||||
"SigCheck" # broken build
|
||||
@ -1992,9 +2054,11 @@ let
|
||||
"SimBindProfiles" # depends on broken package affyio-1.37.0
|
||||
"SIM" # broken build
|
||||
"similaRpeak" # depends on broken package Rsamtools-1.21.8
|
||||
"simmr"
|
||||
"simpleaffy" # depends on broken package affyio-1.37.0
|
||||
"simPop" # depends on broken package r-VIM-4.4.1
|
||||
"SimRAD" # depends on broken package Rsamtools-1.21.8
|
||||
"simr" # depends on broken package r-lme4-1.1-10
|
||||
"SimReg" # broken build
|
||||
"simulatorZ" # broken build
|
||||
"sirt" # depends on broken package nlopt-2.4.2
|
||||
@ -2013,6 +2077,7 @@ let
|
||||
"snpStatsWriter" # depends on broken package snpStats-1.19.0
|
||||
"SNPtools" # depends on broken package Rsamtools-1.21.8
|
||||
"SOD" # depends on broken package cudatoolkit-5.5.22
|
||||
"sodium" # broken build
|
||||
"soGGi" # depends on broken package Rsamtools-1.21.8
|
||||
"soilphysics" # depends on broken package rpanel-1.1-3
|
||||
"SomatiCA" # broken build
|
||||
@ -2022,8 +2087,10 @@ let
|
||||
"SpacePAC" # broken build
|
||||
"spacom" # depends on broken package nlopt-2.4.2
|
||||
"spade" # broken build
|
||||
"SparseLearner" # depends on broken package r-qgraph-1.3.1
|
||||
"spdynmod" # broken build
|
||||
"specificity" # depends on broken package nlopt-2.4.2
|
||||
"specmine" # depends on broken package r-caret-6.0-58
|
||||
"SpeCond" # broken build
|
||||
"SPEM" # broken build
|
||||
"SPIA" # broken build
|
||||
@ -2045,6 +2112,7 @@ let
|
||||
"staRank" # depends on broken package Category-2.35.1
|
||||
"Starr" # depends on broken package affyio-1.37.0
|
||||
"STATegRa" # depends on broken package affyio-1.37.0
|
||||
"StatMethRank"
|
||||
"Statomica" # broken build
|
||||
"stcm" # depends on broken package nlopt-2.4.2
|
||||
"stepp" # depends on broken package nlopt-2.4.2
|
||||
@ -2084,8 +2152,10 @@ let
|
||||
"TIN" # depends on broken package WGCNA-1.47
|
||||
"TitanCNA" # depends on broken package Rsamtools-1.21.8
|
||||
"TKF" # broken build
|
||||
"TLBC" # depends on broken package r-caret-6.0-58
|
||||
"tmle" # broken build
|
||||
"tnam" # depends on broken package r-lme4-1.1-9
|
||||
"tolBasis" # depends on broken package r-polynom-1.3-8
|
||||
"ToPASeq" # depends on broken package Rsamtools-1.21.8
|
||||
"topGO" # build is broken
|
||||
"topologyGSA" # depends on broken package Rsamtools-1.21.8
|
||||
@ -2144,6 +2214,7 @@ let
|
||||
"wgsea" # depends on broken package snpStats-1.19.0
|
||||
"WideLM" # depends on broken package cudatoolkit-5.5.22
|
||||
"wikipediatrend" # broken build
|
||||
"wordbankr" # depends on broken package r-RMySQL-0.10.7
|
||||
"XBSeq" # broken build
|
||||
"xcms" # depends on broken package mzR-2.3.1
|
||||
"XDE" # broken build
|
||||
@ -2152,8 +2223,11 @@ let
|
||||
"xps" # build is broken
|
||||
"XVector" # broken build
|
||||
"yaqcaffy" # depends on broken package affyio-1.37.0
|
||||
"ZeligChoice" # depends on broken package r-AER-1.2-4
|
||||
"Zelig" # depends on broken package r-AER-1.2-4
|
||||
"ZeligMultilevel" # depends on broken package nlopt-2.4.2
|
||||
"zetadiv" # depends on broken package nlopt-2.4.2
|
||||
"zoib"
|
||||
];
|
||||
|
||||
otherOverrides = old: new: {
|
||||
|
||||
Loading…
Reference in New Issue
Block a user