Merge branch 'master' into add-granatier

doc/stdenv/stdenv.xml

@@ -2018,6 +2018,9 @@ addEnvHooks "$hostOffset" myBashFunction
       <para>
        In certain situations you may want to run the main command (<command>autoPatchelf</command>) of the setup hook on a file or a set of directories instead of unconditionally patching all outputs. This can be done by setting the <varname>dontAutoPatchelf</varname> environment variable to a non-empty value.
       </para>
+      <para>
+       By default <command>autoPatchelf</command> will fail as soon as any ELF file requires a dependency which cannot be resolved via the given build inputs. In some situations you might prefer to just leave missing dependencies unpatched and continue to patch the rest. This can be achieved by setting the <envar>autoPatchelfIgnoreMissingDeps</envar> environment variable to a non-empty value.
+      </para>
       <para>
        The <command>autoPatchelf</command> command also recognizes a <parameter class="command">--no-recurse</parameter> command line flag, which prevents it from recursing into subdirectories.
       </para>

nixos/modules/config/users-groups.nix

@@ -430,9 +430,9 @@ in {
     (mkChangedOptionModule
       [ "security" "initialRootPassword" ]
       [ "users" "users" "root" "initialHashedPassword" ]
-      (cfg: if cfg.security.initialHashedPassword == "!"
+      (cfg: if cfg.security.initialRootPassword == "!"
             then null
-            else cfg.security.initialHashedPassword))
+            else cfg.security.initialRootPassword))
   ];
 
   ###### interface

nixos/modules/services/backup/restic.nix

@@ -31,6 +31,59 @@ in
           '';
         };
 
+        rcloneOptions = mkOption {
+          type = with types; nullOr (attrsOf (oneOf [ str bool ]));
+          default = null;
+          description = ''
+            Options to pass to rclone to control its behavior.
+            See <link xlink:href="https://rclone.org/docs/#options"/> for
+            available options. When specifying option names, strip the
+            leading <literal>--</literal>. To set a flag such as
+            <literal>--drive-use-trash</literal>, which does not take a value,
+            set the value to the Boolean <literal>true</literal>.
+          '';
+          example = {
+            bwlimit = "10M";
+            drive-use-trash = "true";
+          };
+        };
+
+        rcloneConfig = mkOption {
+          type = with types; nullOr (attrsOf (oneOf [ str bool ]));
+          default = null;
+          description = ''
+            Configuration for the rclone remote being used for backup.
+            See the remote's specific options under rclone's docs at
+            <link xlink:href="https://rclone.org/docs/"/>. When specifying
+            option names, use the "config" name specified in the docs. 
+            For example, to set <literal>--b2-hard-delete</literal> for a B2
+            remote, use <literal>hard_delete = true</literal> in the
+            attribute set.
+            Warning: Secrets set in here will be world-readable in the Nix
+            store! Consider using the <literal>rcloneConfigFile</literal>
+            option instead to specify secret values separately. Note that
+            options set here will override those set in the config file.
+          '';
+          example = {
+            type = "b2";
+            account = "xxx";
+            key = "xxx";
+            hard_delete = true;
+          };
+        };
+
+        rcloneConfigFile = mkOption {
+          type = with types; nullOr path;
+          default = null;
+          description = ''
+            Path to the file containing rclone configuration. This file
+            must contain configuration for the remote specified in this backup
+            set and also must be readable by root. Options set in
+            <literal>rcloneConfig</literal> will override those set in this
+            file.
+          '';
+        };
+
         repository = mkOption {
           type = types.str;
           description = ''
@@ -170,11 +223,22 @@ in
             ( resticCmd + " forget --prune " + (concatStringsSep " " backup.pruneOpts) )
             ( resticCmd + " check" )
           ];
+          # Helper functions for rclone remotes
+          rcloneRemoteName = builtins.elemAt (splitString ":" backup.repository) 1;
+          rcloneAttrToOpt = v: "RCLONE_" + toUpper (builtins.replaceStrings [ "-" ] [ "_" ] v);
+          rcloneAttrToConf = v: "RCLONE_CONFIG_" + toUpper (rcloneRemoteName + "_" + v);
+          toRcloneVal = v: if lib.isBool v then lib.boolToString v else v;
         in nameValuePair "restic-backups-${name}" ({
           environment = {
             RESTIC_PASSWORD_FILE = backup.passwordFile;
             RESTIC_REPOSITORY = backup.repository;
-          };
+          } // optionalAttrs (backup.rcloneOptions != null) (mapAttrs' (name: value:
+            nameValuePair (rcloneAttrToOpt name) (toRcloneVal value)
+          ) backup.rcloneOptions) // optionalAttrs (backup.rcloneConfigFile != null) {
+            RCLONE_CONFIG = backup.rcloneConfigFile;
+          } // optionalAttrs (backup.rcloneConfig != null) (mapAttrs' (name: value:
+            nameValuePair (rcloneAttrToConf name) (toRcloneVal value)
+          ) backup.rcloneConfig);
           path = [ pkgs.openssh ];
           restartIfChanged = false;
           serviceConfig = {

nixos/modules/services/development/jupyter/default.nix

@@ -6,10 +6,7 @@ let
 
   cfg = config.services.jupyter;
 
-  # NOTE: We don't use top-level jupyter because we don't
+  package = cfg.package;
-  # want to pass in JUPYTER_PATH but use .environment instead,
-  # saving a rebuild.
-  package = pkgs.python3.pkgs.notebook;
 
   kernels = (pkgs.jupyter-kernel.create  {
     definitions = if cfg.kernels != null
@@ -37,6 +34,27 @@ in {
       '';
     };
 
+    package = mkOption {
+      type = types.package;
+      # NOTE: We don't use top-level jupyter because we don't
+      # want to pass in JUPYTER_PATH but use .environment instead,
+      # saving a rebuild.
+      default = pkgs.python3.pkgs.notebook;
+      description = ''
+        Jupyter package to use.
+      '';
+    };
+
+    command = mkOption {
+      type = types.str;
+      default = "jupyter-notebook";
+      example = "jupyter-lab";
+      description = ''
+        Which command the service runs. Note that not all jupyter packages
+        have all commands, e.g. jupyter-lab isn't present in the default package.
+       '';
+    };
+
     port = mkOption {
       type = types.int;
       default = 8888;
@@ -157,7 +175,7 @@ in {
 
         serviceConfig = {
           Restart = "always";
-          ExecStart = ''${package}/bin/jupyter-notebook \
+          ExecStart = ''${package}/bin/${cfg.command} \
             --no-browser \
             --ip=${cfg.ip} \
             --port=${toString cfg.port} --port-retries 0 \

nixos/modules/services/networking/unifi.nix

@@ -162,6 +162,8 @@ in
       unitConfig.RequiresMountsFor = stateDir;
       # This a HACK to fix missing dependencies of dynamic libs extracted from jars
       environment.LD_LIBRARY_PATH = with pkgs.stdenv; "${cc.cc.lib}/lib";
+      # Make sure package upgrades trigger a service restart
+      restartTriggers = [ cfg.unifiPackage cfg.mongodbPackage ];
 
       serviceConfig = {
         Type = "simple";

nixos/modules/system/boot/loader/grub/install-grub.pl

@@ -652,7 +652,7 @@ my @deviceTargets = getList('devices');
 my $prevGrubState = readGrubState();
 my @prevDeviceTargets = split/,/, $prevGrubState->devices;
 my @extraGrubInstallArgs = getList('extraGrubInstallArgs');
-my @prevExtraGrubInstallArgs = $prevGrubState->extraGrubInstallArgs;
+my @prevExtraGrubInstallArgs = @{$prevGrubState->extraGrubInstallArgs};
 
 my $devicesDiffer = scalar (List::Compare->new( '-u', '-a', \@deviceTargets, \@prevDeviceTargets)->get_symmetric_difference());
 my $extraGrubInstallArgsDiffer = scalar (List::Compare->new( '-u', '-a', \@extraGrubInstallArgs, \@prevExtraGrubInstallArgs)->get_symmetric_difference());

nixos/modules/system/boot/luksroot.nix

@@ -473,8 +473,6 @@ in
         [ "aes" "aes_generic" "blowfish" "twofish"
           "serpent" "cbc" "xts" "lrw" "sha1" "sha256" "sha512"
           "af_alg" "algif_skcipher"
-
-          (if pkgs.stdenv.hostPlatform.system == "x86_64-linux" then "aes_x86_64" else "aes_i586")
         ];
       description = ''
         A list of cryptographic kernel modules needed to decrypt the root device(s).

nixos/modules/system/boot/networkd.nix

@@ -302,7 +302,7 @@ let
 
   checkDhcpV6 = checkUnitConfig "DHCPv6" [
     (assertOnlyFields [
-      "UseDns" "UseNTP" "RapidCommit" "ForceDHCPv6PDOtherInformation"
+      "UseDNS" "UseNTP" "RapidCommit" "ForceDHCPv6PDOtherInformation"
       "PrefixDelegationHint"
     ])
     (assertValueOneOf "UseDNS" boolValues)

nixos/modules/system/boot/systemd.nix

@@ -818,6 +818,49 @@ in
       '';
     };
 
+    systemd.watchdog.device = mkOption {
+      type = types.nullOr types.path;
+      default = null;
+      example = "/dev/watchdog";
+      description = ''
+        The path to a hardware watchdog device which will be managed by systemd.
+        If not specified, systemd will default to /dev/watchdog.
+      '';
+    };
+
+    systemd.watchdog.runtimeTime = mkOption {
+      type = types.nullOr types.str;
+      default = null;
+      example = "30s";
+      description = ''
+        The amount of time which can elapse before a watchdog hardware device
+        will automatically reboot the system. Valid time units include "ms",
+        "s", "min", "h", "d", and "w".
+      '';
+    };
+
+    systemd.watchdog.rebootTime = mkOption {
+      type = types.nullOr types.str;
+      default = null;
+      example = "10m";
+      description = ''
+        The amount of time which can elapse after a reboot has been triggered
+        before a watchdog hardware device will automatically reboot the system.
+        Valid time units include "ms", "s", "min", "h", "d", and "w".
+      '';
+    };
+
+    systemd.watchdog.kexecTime = mkOption {
+      type = types.nullOr types.str;
+      default = null;
+      example = "10m";
+      description = ''
+        The amount of time which can elapse when kexec is being executed before
+        a watchdog hardware device will automatically reboot the system. This
+        option should only be enabled if reloadTime is also enabled. Valid
+        time units include "ms", "s", "min", "h", "d", and "w".
+      '';
+    };
   };
 
 
@@ -889,6 +932,19 @@ in
           DefaultIPAccounting=yes
         ''}
         DefaultLimitCORE=infinity
+        ${optionalString (config.systemd.watchdog.device != null) ''
+          WatchdogDevice=${config.systemd.watchdog.device}
+        ''}
+        ${optionalString (config.systemd.watchdog.runtimeTime != null) ''
+          RuntimeWatchdogSec=${config.systemd.watchdog.runtimeTime}
+        ''}
+        ${optionalString (config.systemd.watchdog.rebootTime != null) ''
+          RebootWatchdogSec=${config.systemd.watchdog.rebootTime}
+        ''}
+        ${optionalString (config.systemd.watchdog.kexecTime != null) ''
+          KExecWatchdogSec=${config.systemd.watchdog.kexecTime}
+        ''}
+
         ${config.systemd.extraConfig}
       '';
 

nixos/tests/restic.nix

@@ -4,33 +4,50 @@ import ./make-test-python.nix (
     let
       password = "some_password";
       repository = "/tmp/restic-backup";
-      passwordFile = pkgs.writeText "password" "correcthorsebatterystaple";
+      rcloneRepository = "rclone:local:/tmp/restic-rclone-backup";
+
+      passwordFile = "${pkgs.writeText "password" "correcthorsebatterystaple"}";
+      initialize = true;
+      paths = [ "/opt" ];
+      pruneOpts = [
+        "--keep-daily 2"
+        "--keep-weekly 1"
+        "--keep-monthly 1"
+        "--keep-yearly 99"
+      ];
     in
       {
         name = "restic";
 
         meta = with pkgs.stdenv.lib.maintainers; {
-          maintainers = [ bbigras ];
+          maintainers = [ bbigras i077 ];
         };
 
         nodes = {
           server =
-            { ... }:
+            { pkgs, ... }:
               {
                 services.restic.backups = {
                   remotebackup = {
-                    inherit repository;
+                    inherit repository passwordFile initialize paths pruneOpts;
-                    passwordFile = "${passwordFile}";
+                  };
-                    initialize = true;
+                  rclonebackup = {
-                    paths = [ "/opt" ];
+                    repository = rcloneRepository;
-                    pruneOpts = [
+                    rcloneConfig = {
-                      "--keep-daily 2"
+                      type = "local";
-                      "--keep-weekly 1"
+                      one_file_system = true;
-                      "--keep-monthly 1"
+                    };
-                      "--keep-yearly 99"
+
-                    ];
+                    # This gets overridden by rcloneConfig.type
+                    rcloneConfigFile = pkgs.writeText "rclone.conf" ''
+                      [local]
+                      type=ftp
+                    '';
+                    inherit passwordFile initialize paths pruneOpts;
                   };
                 };
+
+                environment.sessionVariables.RCLONE_CONFIG_LOCAL_TYPE = "local";
               };
         };
 
@@ -38,25 +55,35 @@ import ./make-test-python.nix (
           server.start()
           server.wait_for_unit("dbus.socket")
           server.fail(
-              "${pkgs.restic}/bin/restic -r ${repository} -p ${passwordFile} snapshots"
+              "${pkgs.restic}/bin/restic -r ${repository} -p ${passwordFile} snapshots",
+              "${pkgs.restic}/bin/restic -r ${rcloneRepository} -p ${passwordFile} snapshots",
           )
           server.succeed(
               "mkdir -p /opt",
               "touch /opt/some_file",
+              "mkdir -p /tmp/restic-rclone-backup",
               "timedatectl set-time '2016-12-13 13:45'",
               "systemctl start restic-backups-remotebackup.service",
+              "systemctl start restic-backups-rclonebackup.service",
               '${pkgs.restic}/bin/restic -r ${repository} -p ${passwordFile} snapshots -c | grep -e "^1 snapshot"',
+              '${pkgs.restic}/bin/restic -r ${rcloneRepository} -p ${passwordFile} snapshots -c | grep -e "^1 snapshot"',
               "timedatectl set-time '2017-12-13 13:45'",
               "systemctl start restic-backups-remotebackup.service",
+              "systemctl start restic-backups-rclonebackup.service",
               "timedatectl set-time '2018-12-13 13:45'",
               "systemctl start restic-backups-remotebackup.service",
+              "systemctl start restic-backups-rclonebackup.service",
               "timedatectl set-time '2018-12-14 13:45'",
               "systemctl start restic-backups-remotebackup.service",
+              "systemctl start restic-backups-rclonebackup.service",
               "timedatectl set-time '2018-12-15 13:45'",
               "systemctl start restic-backups-remotebackup.service",
+              "systemctl start restic-backups-rclonebackup.service",
               "timedatectl set-time '2018-12-16 13:45'",
               "systemctl start restic-backups-remotebackup.service",
+              "systemctl start restic-backups-rclonebackup.service",
               '${pkgs.restic}/bin/restic -r ${repository} -p ${passwordFile} snapshots -c | grep -e "^4 snapshot"',
+              '${pkgs.restic}/bin/restic -r ${rcloneRepository} -p ${passwordFile} snapshots -c | grep -e "^4 snapshot"',
           )
         '';
       }

nixos/tests/systemd.nix

@@ -50,6 +50,13 @@ import ./make-test-python.nix ({ pkgs, ... }: {
         fi
       '';
     };
+
+    systemd.watchdog = {
+      device = "/dev/watchdog";
+      runtimeTime = "30s";
+      rebootTime = "10min";
+      kexecTime = "5min";
+    };
   };
 
   testScript = ''
@@ -117,5 +124,20 @@ import ./make-test-python.nix ({ pkgs, ... }: {
         retcode, output = machine.execute("systemctl status testservice1.service")
         assert retcode in [0, 3]  # https://bugs.freedesktop.org/show_bug.cgi?id=77507
         assert "CPU:" in output
+
+    # Test systemd is configured to manage a watchdog
+    with subtest("systemd manages hardware watchdog"):
+        machine.wait_for_unit("multi-user.target")
+
+        # It seems that the device's path doesn't appear in 'systemctl show' so
+        # check it separately.
+        assert "WatchdogDevice=/dev/watchdog" in machine.succeed(
+            "cat /etc/systemd/system.conf"
+        )
+
+        output = machine.succeed("systemctl show | grep Watchdog")
+        assert "RuntimeWatchdogUSec=30s" in output
+        assert "RebootWatchdogUSec=10m" in output
+        assert "KExecWatchdogUSec=5m" in output
   '';
 })

pkgs/applications/audio/gnome-podcasts/default.nix

@@ -20,7 +20,7 @@
 }:
 
 rustPlatform.buildRustPackage rec {
-  version = "0.4.7";
+  version = "0.4.8";
   pname = "gnome-podcasts";
 
   src = fetchFromGitLab {
@@ -28,10 +28,10 @@ rustPlatform.buildRustPackage rec {
     owner = "World";
     repo = "podcasts";
     rev = version;
-    sha256 = "0vy5i77bv8c22ldhrnr4z6kx22zqnb1lg3s7y8673bqjgd7dppi0";
+    sha256 = "0y2332zjq7vf1v38wzwz98fs19vpzy9kl7y0xbdzqr303l59hjb1";
   };
 
-  cargoSha256 = "1dlbdxsf9p2jzrsclm43k95y8m3zcd41qd9ajg1ii3fpnahi58kd";
+  cargoSha256 = "1jbii9k4bkrivdk1ffr6556q1sgk9j4jbzwnn8vbxmksyl1x328q";
 
   nativeBuildInputs = [
     meson

pkgs/applications/audio/mixxx/default.nix

@@ -19,13 +19,13 @@ let
 in
 mkDerivation rec {
   pname = "mixxx";
-  version = "2.2.3";
+  version = "2.2.4";
 
   src = fetchFromGitHub {
     owner = "mixxxdj";
     repo = "mixxx";
     rev = "release-${version}";
-    sha256 = "1h7q25fv62c5m74d4cn1m6mpanmqpbl2wqbch4qvn488jb2jw1dv";
+    sha256 = "1dj9li8av9b2kbm76jvvbdmihy1pyrw0s4xd7dd524wfhwr1llxr";
   };
 
   nativeBuildInputs = [ scons.py2 ];

pkgs/applications/blockchains/go-ethereum.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "go-ethereum";
-  version = "1.9.15";
+  version = "1.9.16";
 
   src = fetchFromGitHub {
     owner = "ethereum";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1c69rfnx9130b87pw9lnaxyrbzwfhqb2dxyl7qyiscq85hqs16f9";
+    sha256 = "0vycnyz6v39cfrck70h3dbn7jkkh67q0fli240ksw2cp4pqwpwcn";
   };
 
   usb = fetchFromGitHub {
@@ -18,7 +18,7 @@ buildGoModule rec {
     sha256 = "0asd5fz2rhzkjmd8wjgmla5qmqyz4jaa6qf0n2ycia16jsck6wc2";
   };
 
-  vendorSha256 = "1pjgcx6sydfipsx8s0kl7n6r3lk61klsfrkd7cg4l934k590q2n7";
+  vendorSha256 = "0w2214fllw93xbrlxayhl014aqbjsc8zz7mpik7w5b26m60hn5kr";
 
   overrideModAttrs = (_: {
       postBuild = ''

pkgs/applications/editors/jetbrains/default.nix

@@ -294,12 +294,12 @@ in
 
   goland = buildGoland rec {
     name = "goland-${version}";
-    version = "2020.1.3"; /* updated by script */
+    version = "2020.1.4"; /* updated by script */
     description = "Up and Coming Go IDE";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/go/${name}.tar.gz";
-      sha256 = "0pqwj4gc23gf10xqciwndimb4ml7djmx8m5rh52c07m77y4aniyn"; /* updated by script */
+      sha256 = "1wgcc1faqn0y9brxikh53s6ly7zvpdmpg7m5gvp5437isbllisbl"; /* updated by script */
     };
     wmClass = "jetbrains-goland";
     update-channel = "GoLand RELEASE";
@@ -307,12 +307,12 @@ in
 
   idea-community = buildIdea rec {
     name = "idea-community-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "Integrated Development Environment (IDE) by Jetbrains, community edition";
     license = stdenv.lib.licenses.asl20;
     src = fetchurl {
       url = "https://download.jetbrains.com/idea/ideaIC-${version}.tar.gz";
-      sha256 = "07gfqyp6blbf7v8p106ngpq7c5p0llcjahi205yg2jgzkhshn7ld"; /* updated by script */
+      sha256 = "1aycsy2pg8nw5il8p2r6bhim9y47g5rfga63f0p435mpjmzpll0s"; /* updated by script */
     };
     wmClass = "jetbrains-idea-ce";
     update-channel = "IntelliJ IDEA RELEASE";
@@ -320,12 +320,12 @@ in
 
   idea-ultimate = buildIdea rec {
     name = "idea-ultimate-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "Integrated Development Environment (IDE) by Jetbrains, requires paid license";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/idea/ideaIU-${version}-no-jbr.tar.gz";
-      sha256 = "13qj8n5daz0z0pjizyfsvbbr1gxp5479ar3a68ygi0vrpmbdbssd"; /* updated by script */
+      sha256 = "188wkqcv67kizq4w6v4vg9jpr3qfgbg9x5jc77s4ki4nafkbfxas"; /* updated by script */
     };
     wmClass = "jetbrains-idea";
     update-channel = "IntelliJ IDEA RELEASE";
@@ -333,12 +333,12 @@ in
 
   mps = buildMps rec {
     name = "mps-${version}";
-    version = "2019.2";
+    version = "2020.1.2"; /* updated by script */
     description = "Create your own domain-specific language";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
-      url = "https://download.jetbrains.com/mps/2019.2/MPS-${version}.tar.gz";
+      url = "https://download.jetbrains.com/mps/2020.1/MPS-${version}.tar.gz";
-      sha256 = "0rph3bibj74ddbyrn0az1npn4san4g1alci8nlq4gaqdlcz6zx22";
+      sha256 = "0ygk31l44bxcv64h6lnqxssmx5prcb5b5xdm3qxmrv7xz1qv59c1"; /* updated by script */
     };
     wmClass = "jetbrains-mps";
     update-channel = "MPS RELEASE";
@@ -346,12 +346,12 @@ in
 
   phpstorm = buildPhpStorm rec {
     name = "phpstorm-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "Professional IDE for Web and PHP developers";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/webide/PhpStorm-${version}.tar.gz";
-      sha256 = "00c8vlp125j56v9g9d4rc5g4dhgvl1bhi6qrzvpaf6x77jbq4fv4"; /* updated by script */
+      sha256 = "0cw2rx68rl6mrnizpb69ahz4hrh8blry70cv4rjnkw19d4x877m8"; /* updated by script */
     };
     wmClass = "jetbrains-phpstorm";
     update-channel = "PhpStorm RELEASE";
@@ -359,12 +359,12 @@ in
 
   pycharm-community = buildPycharm rec {
     name = "pycharm-community-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "PyCharm Community Edition";
     license = stdenv.lib.licenses.asl20;
     src = fetchurl {
       url = "https://download.jetbrains.com/python/${name}.tar.gz";
-      sha256 = "1s04b9w7sydix1sjqzmby63nwcvzs6iw28wz7441kxgryl9qg0qw"; /* updated by script */
+      sha256 = "1290k17nihiih8ipxfqax1xlx320h1vkwbcc5hc50psvpsfgiall"; /* updated by script */
     };
     wmClass = "jetbrains-pycharm-ce";
     update-channel = "PyCharm RELEASE";
@@ -372,12 +372,12 @@ in
 
   pycharm-professional = buildPycharm rec {
     name = "pycharm-professional-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "PyCharm Professional Edition";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/python/${name}.tar.gz";
-      sha256 = "1ysj00qbn5ik6i5953b9mln4g456fmn3phdln9m5jmcb0126y235"; /* updated by script */
+      sha256 = "1ag8jrfs38f0q11pyil4pvddi8lv46b0jxd3mcbmidn3p1z29f9x"; /* updated by script */
     };
     wmClass = "jetbrains-pycharm";
     update-channel = "PyCharm RELEASE";
@@ -385,12 +385,12 @@ in
 
   rider = buildRider rec {
     name = "rider-${version}";
-    version = "2020.1.3"; /* updated by script */
+    version = "2020.1.4"; /* updated by script */
     description = "A cross-platform .NET IDE based on the IntelliJ platform and ReSharper";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/rider/JetBrains.Rider-${version}.tar.gz";
-      sha256 = "1zzkd3b5j3q6jqrvibxz33a4fcm7pgqfx91bqjs615v3499ncng7"; /* updated by script */
+      sha256 = "0vicgwgsbllfw6fz4l82x4vbka3agf541576ix9akyvsskwbaxj9"; /* updated by script */
     };
     wmClass = "jetbrains-rider";
     update-channel = "Rider RELEASE";
@@ -398,12 +398,12 @@ in
 
   ruby-mine = buildRubyMine rec {
     name = "ruby-mine-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "The Most Intelligent Ruby and Rails IDE";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/ruby/RubyMine-${version}.tar.gz";
-      sha256 = "1ycwml7fyhjajjfy1fhggmx0mcdcjidkxll7357rv2z51r0yhc9h"; /* updated by script */
+      sha256 = "1z6z2c31aq29hzi1cifc77zz9vnw48h2jvw4w61lvgskcnzrw9vn"; /* updated by script */
     };
     wmClass = "jetbrains-rubymine";
     update-channel = "RubyMine RELEASE";
@@ -411,12 +411,12 @@ in
 
   webstorm = buildWebStorm rec {
     name = "webstorm-${version}";
-    version = "2020.1.2"; /* updated by script */
+    version = "2020.1.3"; /* updated by script */
     description = "Professional IDE for Web and JavaScript development";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/webstorm/WebStorm-${version}.tar.gz";
-      sha256 = "1szgiccimfk99z9x1k99lgic6ix81fdahf1k3a88rddl8hhncjwv"; /* updated by script */
+      sha256 = "19zqac77fkw1czf86s39ggnd24r9ljr80gj422ch4fdkz4qy832q"; /* updated by script */
     };
     wmClass = "jetbrains-webstorm";
     update-channel = "WebStorm RELEASE";

pkgs/applications/graphics/ImageMagick/7.0.nix

@@ -13,8 +13,8 @@ let
     else throw "ImageMagick is not supported on this platform.";
 
   cfg = {
-    version = "7.0.10-17";
+    version = "7.0.10-19";
-    sha256 = "15cj9qkikx13j6gfqaawi4nh09lnzg3asf5mdcswx6z6yhbf90zx";
+    sha256 = "12ilfdbxllkaa3bs9z86d2nkklqz5c0l57kqj91l2ixjlvra64w0";
     patches = [];
   };
 in

pkgs/applications/graphics/darktable/default.nix

@@ -34,8 +34,6 @@ stdenv.mkDerivation rec {
     "-DUSE_KWALLET=OFF"
   ];
 
-  # Reduce the risk of collisions
-  postInstall = "rm -r $out/share/doc";
 
   # darktable changed its rpath handling in commit
   # 83c70b876af6484506901e6b381304ae0d073d3c and as a result the

pkgs/applications/graphics/gscan2pdf/default.nix

@@ -10,11 +10,11 @@ with stdenv.lib;
 
 perlPackages.buildPerlPackage rec {
   pname = "gscan2pdf";
-  version = "2.8.0";
+  version = "2.8.1";
 
   src = fetchurl {
     url = "mirror://sourceforge/gscan2pdf/${version}/${pname}-${version}.tar.xz";
-    sha256 = "0rqx41hkppil3lp1dhkxwlhv0kwp8w8fkgzlapryq1yd9pgkx6lw";
+    sha256 = "00g2vw7lz3yb4nq358x8d3r4mf3hkrq2vw1g9lli27zdp5p6jja1";
   };
 
   nativeBuildInputs = [ wrapGAppsHook ];

pkgs/applications/kde/bovo.nix

@@ -0,0 +1,28 @@
+{ mkDerivation, lib
+, libkdegames, extra-cmake-modules
+, kdeclarative, knewstuff
+}:
+
+mkDerivation {
+  name = "bovo";
+  meta = with lib; {
+    homepage = "https://kde.org/applications/en/games/org.kde.bovo";
+    description = "Five in a row application";
+    longDescription = ''
+      Bovo is a Gomoku (from Japanese 五目並べ - lit. "five points") like game for two players,
+      where the opponents alternate in placing their respective pictogram on the game board.
+      (Also known as: Connect Five, Five in a row, X and O, Naughts and Crosses)
+    '';
+    maintainers = with maintainers; [ freezeboy ];
+    license = licenses.gpl2Plus;
+    platforms = platforms.linux;
+  };
+  nativeBuildInputs = [
+    extra-cmake-modules
+  ];
+  buildInputs = [
+    kdeclarative
+    knewstuff
+    libkdegames
+  ];
+}

pkgs/applications/kde/default.nix

@@ -74,6 +74,7 @@ let
       akregator = callPackage ./akregator.nix {};
       ark = callPackage ./ark {};
       baloo-widgets = callPackage ./baloo-widgets.nix {};
+      bovo = callPackage ./bovo.nix {};
       calendarsupport = callPackage ./calendarsupport.nix {};
       dolphin = callPackage ./dolphin.nix {};
       dolphin-plugins = callPackage ./dolphin-plugins.nix {};
@@ -175,6 +176,7 @@ let
       messagelib = callPackage ./messagelib.nix {};
       minuet = callPackage ./minuet.nix {};
       okular = callPackage ./okular.nix {};
+      picmi = callPackage ./picmi.nix {};
       pimcommon = callPackage ./pimcommon.nix {};
       pim-data-exporter = callPackage ./pim-data-exporter.nix {};
       pim-sieve-editor = callPackage ./pim-sieve-editor.nix {};

pkgs/applications/kde/picmi.nix

@@ -0,0 +1,25 @@
+{ mkDerivation, lib
+, libkdegames, extra-cmake-modules
+, kdeclarative, knewstuff
+}:
+
+mkDerivation {
+  name = "picmi";
+  meta = with lib; {
+    description = "Nonogram game";
+    longDescription = ''The goal is to reveal the hidden pattern in the board by coloring or
+      leaving blank the cells in a grid according to numbers given at the side of the grid.
+      '';
+    maintainers = with maintainers; [ freezeboy ];
+    license = licenses.gpl2Plus;
+    platforms = platforms.linux;
+  };
+  nativeBuildInputs = [
+    extra-cmake-modules
+  ];
+  buildInputs = [
+    kdeclarative
+    knewstuff
+    libkdegames
+  ];
+}

pkgs/applications/misc/font-manager/default.nix

@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   pname = "font-manager";
-  version = "0.7.7";
+  version = "0.7.8";
 
   src = fetchFromGitHub {
     owner = "FontManager";
     repo = "master";
     rev = version;
-    sha256 = "1bzqvspplp1zj0n0869jqbc60wgbjhf0vdrn5bj8dfawxynh8s5f";
+    sha256 = "0s1l30y55l45rrqd9lygvp2gzrqw25rmjgnnja6s5rzs79gc668c";
   };
 
   nativeBuildInputs = [

pkgs/applications/misc/lyx/default.nix

@@ -3,12 +3,12 @@
 }:
 
 mkDerivation rec {
-  version = "2.3.5.1";
+  version = "2.3.5.2";
   pname = "lyx";
 
   src = fetchurl {
     url = "ftp://ftp.lyx.org/pub/lyx/stable/2.3.x/${pname}-${version}.tar.xz";
-    sha256 = "0mv32s26igm0pd8vs7d2mk1240dpr83y0a2wyh3xz6b67ph0w157";
+    sha256 = "1pwdh0ljd7lm5a83vsqmp4695irhig07wxa90jc23ng5gap589na";
   };
 
   # LaTeX is used from $PATH, as people often want to have it with extra pkgs

pkgs/applications/misc/masterpdfeditor/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "masterpdfeditor";
-  version = "5.4.38";
+  version = "5.6.09";
 
   src = fetchurl {
     url = "https://code-industry.net/public/master-pdf-editor-${version}-qt5.amd64.tar.gz";
-    sha256 = "0fidy8gd4mqvyfgmrwdiz8z53dyzihqqhgfrffj0z0idm2zi4mcq";
+    sha256 = "0v9j6fwr0xl03kr77vf4wdb06zlplmn4mr3jyzxhvs8a77scmfzb";
   };
 
   nativeBuildInputs = [ autoPatchelfHook wrapQtAppsHook ];

pkgs/applications/misc/tipp10/default.nix

@@ -3,13 +3,13 @@
 
 mkDerivation rec {
   pname = "tipp10";
-  version = "3.1.0";
+  version = "3.2.0";
 
   src = fetchFromGitLab {
-    owner = "a_a";
+    owner = "tipp10";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1mksga1zyqz1y2s524nkw86irg36zpjwz7ff87n2ygrlysczvnx1";
+    sha256 = "0fav5jlw6lw78iqrj7a65b8vd50hhyyaqyzmfrvyxirpsqhjk1v7";
   };
 
   nativeBuildInputs = [ cmake qttools ];

pkgs/applications/misc/wofi/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchhg, fetchpatch, pkg-config, meson, ninja, wayland, gtk3, wrapGAppsHook }:
+{ stdenv, lib, fetchhg, fetchpatch, pkg-config, meson, ninja, wayland, gtk3, wrapGAppsHook, installShellFiles }:
 
 stdenv.mkDerivation rec {
   pname = "wofi";
@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
     sha256 = "086j5wshawjbwdmmmldivfagc2rr7g5a2gk11l0snqqslm294xsn";
   };
 
-  nativeBuildInputs = [ pkg-config meson ninja wrapGAppsHook ];
+  nativeBuildInputs = [ pkg-config meson ninja wrapGAppsHook installShellFiles ];
   buildInputs = [ wayland gtk3 ];
 
   # Fixes icon bug on NixOS.
@@ -23,6 +23,10 @@ stdenv.mkDerivation rec {
     })
   ];
 
+  postInstall = ''
+    installManPage man/wofi*
+  '';
+
   meta = with lib; {
     description = "A launcher/menu program for wlroots based wayland compositors such as sway";
     homepage = "https://hg.sr.ht/~scoopta/wofi";

pkgs/applications/misc/wtf/default.nix

@@ -7,16 +7,16 @@
 
 buildGoModule rec {
   pname = "wtf";
-  version = "0.30.0";
+  version = "0.31.0";
 
   src = fetchFromGitHub {
     owner = "wtfutil";
     repo = pname;
     rev = "v${version}";
-    sha256 = "11vy39zygk1gxb1nc1zmxlgs6fn7yq68090fwm2jar0lsxx8a83i";
+    sha256 = "07ngk83p753w9qxm8bvw6n5vk0zldn14yv08d900sxny8cg2h0rb";
    };
 
-  vendorSha256 = "0qfb352gmsmy5glrsjwc3w57di5k2kjdsyfqn4xf7p4v12yg88va";
+  vendorSha256 = "09iy148pnbdrzjj2j50lbd8s9mkv7vggrx77mj88p1gnqclz3lip";
 
   buildFlagsArray = [ "-ldflags=-s -w -X main.version=${version}" ];
 

pkgs/applications/networking/browsers/firefox-bin/default.nix

@@ -47,6 +47,7 @@
 , gnupg
 , ffmpeg_3
 , runtimeShell
+, mesa # firefox wants gbm for drm+dmabuf
 , systemLocale ? config.i18n.defaultLocale or "en-US"
 }:
 
@@ -106,6 +107,7 @@ stdenv.mkDerivation {
       gtk2
       gtk3
       kerberos
+      mesa
       libX11
       libXScrnSaver
       libXcomposite

pkgs/applications/networking/browsers/firefox/common.nix

@@ -177,7 +177,7 @@ stdenv.mkDerivation ({
 
     BINDGEN_CFLAGS="$(< ${stdenv.cc}/nix-support/libc-cflags) \
       $(< ${stdenv.cc}/nix-support/cc-cflags) \
-      ${stdenv.cc.default_cxx_stdlib_compile} \
+      $(< ${stdenv.cc}/nix-support/libcxx-cxxflags) \
       ${lib.optionalString stdenv.cc.isClang "-idirafter ${stdenv.cc.cc}/lib/clang/${lib.getVersion stdenv.cc.cc}/include"} \
       ${lib.optionalString stdenv.cc.isGNU "-isystem ${stdenv.cc.cc}/include/c++/${lib.getVersion stdenv.cc.cc} -isystem ${stdenv.cc.cc}/include/c++/${lib.getVersion stdenv.cc.cc}/${stdenv.hostPlatform.config}"} \
       $NIX_CFLAGS_COMPILE"

pkgs/applications/networking/browsers/firefox/wrapper.nix

@@ -10,6 +10,7 @@
 , udev
 , kerberos
 , libva
+, mesa # firefox wants gbm for drm+dmabuf
 }:
 
 ## configurability of the wrapper itself
@@ -26,11 +27,12 @@ let
     , nameSuffix ? ""
     , icon ? browserName
     , extraNativeMessagingHosts ? []
-    , gdkWayland ? false
+    , forceWayland ? false
+    , useGlvnd ? true
     , cfg ? config.${browserName} or {}
     }:
 
-    assert gdkWayland -> (browser ? gtk3); # Can only use the wayland backend if gtk3 is being used
+    assert forceWayland -> (browser ? gtk3); # Can only use the wayland backend if gtk3 is being used
 
     let
       enableAdobeFlash = cfg.enableAdobeFlash or false;
@@ -65,10 +67,10 @@ let
           ++ lib.optional (cfg.enableFXCastBridge or false) fx_cast_bridge
           ++ extraNativeMessagingHosts
         );
-      libs =   lib.optionals stdenv.isLinux [ udev libva ]
+      libs =   lib.optionals stdenv.isLinux [ udev libva mesa ]
             ++ lib.optional ffmpegSupport ffmpeg
             ++ lib.optional gssSupport kerberos
-            ++ lib.optional gdkWayland libglvnd
+            ++ lib.optional useGlvnd libglvnd
             ++ lib.optionals (cfg.enableQuakeLive or false)
             (with xorg; [ stdenv.cc libX11 libXxf86dga libXxf86vm libXext libXt alsaLib zlib ])
             ++ lib.optional (enableAdobeFlash && (cfg.enableAdobeFlashDRM or false)) hal-flash
@@ -83,7 +85,7 @@ let
         exec = "${browserName}${nameSuffix} %U";
         inherit icon;
         comment = "";
-        desktopName = "${desktopName}${nameSuffix}${lib.optionalString gdkWayland " (Wayland)"}";
+        desktopName = "${desktopName}${nameSuffix}${lib.optionalString forceWayland " (Wayland)"}";
         genericName = "Web Browser";
         categories = "Network;WebBrowser;";
         mimeType = stdenv.lib.concatStringsSep ";" [
@@ -124,8 +126,8 @@ let
             --set SNAP_NAME "firefox" \
             --set MOZ_LEGACY_PROFILES 1 \
             --set MOZ_ALLOW_DOWNGRADE 1 \
-            ${lib.optionalString gdkWayland ''
+            ${lib.optionalString forceWayland ''
-              --set GDK_BACKEND "wayland" \
+              --set MOZ_ENABLE_WAYLAND "1" \
             ''}${lib.optionalString (browser ? gtk3)
                 ''--prefix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH" \
                   --suffix XDG_DATA_DIRS : '${gnome3.adwaita-icon-theme}/share'

pkgs/applications/networking/cluster/docker-machine/hyperkit.nix

@@ -1,12 +1,12 @@
 { lib, buildGoModule, minikube }:
 
 buildGoModule rec {
-  inherit (minikube) version src nativeBuildInputs buildInputs vendorSha256 commit;
+  inherit (minikube) version src nativeBuildInputs buildInputs vendorSha256;
 
   pname = "docker-machine-hyperkit";
 
   buildPhase = ''
-    make docker-machine-driver-hyperkit COMMIT=${commit}
+    make docker-machine-driver-hyperkit COMMIT=${src.rev}
   '';
 
   installPhase = ''

pkgs/applications/networking/cluster/docker-machine/kvm2.nix

@@ -1,7 +1,7 @@
 { lib, buildGoModule, minikube }:
 
 buildGoModule rec {
-  inherit (minikube) version src nativeBuildInputs buildInputs vendorSha256 commit;
+  inherit (minikube) version src nativeBuildInputs buildInputs vendorSha256;
 
   pname = "docker-machine-kvm2";
 
@@ -10,7 +10,7 @@ buildGoModule rec {
   '';
 
   buildPhase = ''
-    make docker-machine-driver-kvm2 COMMIT=${commit}
+    make docker-machine-driver-kvm2 COMMIT=${src.rev}
   '';
 
   installPhase = ''

pkgs/applications/networking/cluster/fluxctl/default.nix

@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "fluxctl";
-  version = "1.19.0";
+  version = "1.20.0";
 
   src = fetchFromGitHub {
     owner = "weaveworks";
     repo = "flux";
     rev = version;
-    sha256 = "1w6ndp0nrpps6pkxnq38hikbnzwahi6j9gn8l0bxd0qkf7cjc5w0";
+    sha256 = "0bfib5pg2cbip6fw45slb0h3a7qpikxsfpclzr86bcnjq60pshl1";
   };
 
-  vendorSha256 = "0w5l1lkzx4frllflkbilj8qqwf54wkz7hin7q8xn1vflkv3lxcnp";
+  vendorSha256 = "0a5sv11pb2i6r0ffwaiqdhc0m7gz679yfmqw6ix9imk4ybhf4jp9";
 
   subPackages = [ "cmd/fluxctl" ];
 

pkgs/applications/networking/cluster/minikube/default.nix

@@ -11,18 +11,15 @@
 
 buildGoModule rec {
   pname = "minikube";
-  version = "1.11.0";
+  version = "1.12.0";
 
-  # for -ldflags
+  vendorSha256 = "0wcm7kw5z7d0ch59nyx5xlv5ci7jrwnzspmsh1yb76318cx2aghi";
-  commit = "57e2f55f47effe9ce396cea42a1e0eb4f611ebbd";
-
-  vendorSha256 = "1l9dxn7yy21x4b3cg6l5a08wx2ng8qf531ilg8yf1rznwfwjajrv";
 
   src = fetchFromGitHub {
     owner = "kubernetes";
     repo = "minikube";
     rev = "v${version}";
-    sha256 = "0y761svwyrpc4ywdd4vr9hxkg6593wg4wwqzn8n86g0zcz6qg11d";
+    sha256 = "0bvdyfx5vjcgnkqd23rpbbhxf1zigpzxlqpay2sb6dpldsj0nhdk";
   };
 
   nativeBuildInputs = [ go-bindata installShellFiles pkg-config which ];
@@ -30,7 +27,7 @@ buildGoModule rec {
   buildInputs = if stdenv.isDarwin then [ vmnet ] else if stdenv.isLinux then [ libvirt ] else null;
 
   buildPhase = ''
-    make COMMIT=${commit}
+    make COMMIT=${src.rev}
   '';
 
   installPhase = ''
@@ -40,7 +37,7 @@ buildGoModule rec {
     export MINIKUBE_WANTUPDATENOTIFICATION=false
     export MINIKUBE_WANTKUBECTLDOWNLOADMSG=false
 
-    for shell in bash zsh; do
+    for shell in bash zsh fish; do
       $out/bin/minikube completion $shell > minikube.$shell
       installShellCompletion minikube.$shell
     done

pkgs/applications/networking/gns3/default.nix

@@ -1,7 +1,7 @@
 { callPackage }:
 
 let
-  stableVersion = "2.2.8";
+  stableVersion = "2.2.11";
   previewVersion = stableVersion;
   addVersion = args:
     let version = if args.stable then stableVersion else previewVersion;
@@ -15,18 +15,19 @@ let
           src = oldAttrs.src.override {
             inherit version sha256;
           };
-          doCheck = oldAttrs.doCheck && (attrname != "psutil");
         });
       };
     commonOverrides = [
-      (mkOverride "psutil" "5.6.6"
+      (mkOverride "psutil" "5.7.0"
-        "1rs6z8bfy6bqzw88s4i5zllrx3i18hnkv4akvmw7bifngcgjh8dd")
+        "03jykdi3dgf1cdal9bv4fq9zjvzj9l9bs99gi5ar81sdl5nc2pk8")
+      (mkOverride "jsonschema" "3.2.0"
+        "0ykr61yiiizgvm3bzipa3l73rvj49wmrybbfwhvpgk3pscl5pa68")
     ];
   };
   mkGui = args: callPackage (import ./gui.nix (addVersion args // extraArgs)) { };
   mkServer = args: callPackage (import ./server.nix (addVersion args // extraArgs)) { };
-  guiSrcHash = "1qgzad9hdbvkdalzdnlg5gnlzn2f9qlpd1aj8djmi6w1mmdkf9q7";
+  guiSrcHash = "1carwhp49l9zx2p6i3in03x6rjzn0x6ls2svwazd643rmrl4y7gn";
-  serverSrcHash = "1kg38dh0xk4yvi7hz0d5dq9k0wany0sfd185l0zxs3nz78zd23an";
+  serverSrcHash = "0acbxay1pwq62yq9q67hid44byyi6rb6smz5wa8br3vka7z31iqf";
 in {
   guiStable = mkGui {
     stable = true;

pkgs/applications/networking/gns3/gui.nix

@@ -4,8 +4,6 @@
 
 let
   defaultOverrides = commonOverrides ++ [
-    (mkOverride "jsonschema" "3.2.0"
-      "0ykr61yiiizgvm3bzipa3l73rvj49wmrybbfwhvpgk3pscl5pa68")
   ];
 
   python = python3.override {
@@ -23,7 +21,7 @@ in python.pkgs.buildPythonPackage rec {
   };
 
   propagatedBuildInputs = with python.pkgs; [
-    raven psutil jsonschema # tox for check
+    sentry-sdk psutil jsonschema # tox for check
     # Runtime dependencies
     sip (pyqt5.override { withWebSockets = true; }) distro setuptools
     pkgs.qt5Full

pkgs/applications/networking/gns3/server.nix

@@ -4,10 +4,19 @@
 
 let
   defaultOverrides = commonOverrides ++ [
-    (mkOverride "jsonschema" "3.2.0"
+    (mkOverride "aiofiles" "0.5.0"
-      "0ykr61yiiizgvm3bzipa3l73rvj49wmrybbfwhvpgk3pscl5pa68")
+      "98e6bcfd1b50f97db4980e182ddd509b7cc35909e903a8fe50d8849e02d815af")
-    (mkOverride "aiofiles" "0.4.0"
+    (self: super: {
-      "1vmvq9qja3wahv8m1adkyk00zm7j0x64pk3f2ry051ja66xa07h2")
+      py-cpuinfo = super.py-cpuinfo.overridePythonAttrs (oldAttrs: rec {
+        version = "6.0.0";
+        src = fetchFromGitHub {
+           owner = "workhorsy";
+           repo = "py-cpuinfo";
+           rev = "v${version}";
+           sha256 = "0595gjkd7gzmn9cfpgjw3ia2sl1y8mmw7ajyscibjx59m5mqcki5";
+        };
+      });
+    })
   ];
 
   python = python3.override {
@@ -31,7 +40,7 @@ in python.pkgs.buildPythonPackage {
 
   propagatedBuildInputs = with python.pkgs; [
     aiohttp-cors yarl aiohttp multidict setuptools
-    jinja2 psutil zipstream raven jsonschema distro async_generator aiofiles
+    jinja2 psutil zipstream sentry-sdk jsonschema distro async_generator aiofiles
     prompt_toolkit py-cpuinfo
   ];
 

pkgs/applications/networking/ipfs-migrator/default.nix

@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "ipfs-migrator";
-  version = "1.5.1";
+  version = "1.6.3";
 
   src = fetchFromGitHub {
     owner = "ipfs";
     repo = "fs-repo-migrations";
     rev = "v${version}";
-    sha256 = "18pjxkxfbsbbj4hs4xyzfmmz991h31785ldx41dll6wa9zx4lsnm";
+    sha256 = "13ah5jk8n3wznvag6dda1ssgpqsdr9pdgvqm9gcsb7zzls89j9x5";
   };
 
   vendorSha256 = null;
@@ -22,4 +22,4 @@ buildGoModule rec {
     platforms = platforms.unix;
     maintainers = with maintainers; [ elitak ];
   };
-}
+}

pkgs/applications/networking/mailreaders/mutt/default.nix

@@ -27,11 +27,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "mutt";
-  version = "1.14.5";
+  version = "1.14.6";
 
   src = fetchurl {
     url = "http://ftp.mutt.org/pub/mutt/${pname}-${version}.tar.gz";
-    sha256 = "0p1xiqzmkqlzy5yi4l0dh0lacdq300zdj48zk0fir8j1pp512sri";
+    sha256 = "0i0q6vwhnb1grimsrpmz8maw255rh9k0laijzxkry6xqa80jm5s7";
   };
 
   patches = optional smimeSupport (fetchpatch {

pkgs/applications/networking/mailreaders/thunderbird/default.nix

@@ -177,7 +177,7 @@ stdenv.mkDerivation rec {
 
     BINDGEN_CFLAGS="$(< ${stdenv.cc}/nix-support/libc-cflags) \
       $(< ${stdenv.cc}/nix-support/cc-cflags) \
-      ${stdenv.cc.default_cxx_stdlib_compile} \
+      $(< ${stdenv.cc}/nix-support/libcxx-cxxflags) \
       ${
         lib.optionalString stdenv.cc.isClang
         "-idirafter ${stdenv.cc.cc}/lib/clang/${

pkgs/applications/networking/mailreaders/trojita/default.nix

@@ -19,12 +19,12 @@
 
 mkDerivation rec {
   pname = "trojita";
-  version = "0.7.20190618";
+  version = "0.7.20200706";
 
   src = fetchgit {
     url = "https://anongit.kde.org/trojita.git";
-    rev = "90b417b131853553c94ff93aef62abaf301aa8f1";
+    rev = "e973a5169f18ca862ceb8ad749c93cd621d86e14";
-    sha256 = "0xpxq5bzqaa68lkz90wima5q2m0mdcn0rvnigb66lylb4n20mnql";
+    sha256 = "0r8nmlqwgsqkk0k8xh32fkwvv6iylj35xq2h8b7l3g03yc342kbn";
   };
 
   buildInputs = [

pkgs/applications/networking/mumble/default.nix

@@ -128,14 +128,14 @@ let
   } source;
 
   source = rec {
-    version = "1.3.1";
+    version = "1.3.2";
 
     # Needs submodules
     src = fetchFromGitHub {
       owner = "mumble-voip";
       repo = "mumble";
       rev = version;
-      sha256 = "1xsla9g7xbq6xniwcsjik5hbjh0xahv44qh4z9hjn7p70b8vgnwc";
+      sha256 = "1ljn7h7dr9iyhvq7rdh0prl7hzn9d2hhnxv0ni6dha6f7d9qbfy6";
       fetchSubmodules = true;
     };
   };

pkgs/applications/networking/p2p/stig/default.nix

@@ -7,13 +7,13 @@ python3Packages.buildPythonApplication rec {
   pname = "stig";
   # This project has a different concept for pre release / alpha,
   # Read the project's README for details: https://github.com/rndusr/stig#stig
-  version = "0.11.0a";
+  version = "0.11.2a0";
 
   src = fetchFromGitHub {
     owner = "rndusr";
     repo = "stig";
     rev = "v${version}";
-    sha256 = "192v8f80jfly12bqzsslpxlvm72kdqm3jl40x1az5czpg4ab3lb7";
+    sha256 = "05dn6mr86ly65gdqarl16a2jk1bwiw5xa6r4kyag3s6lqsv66iw8";
   };
 
   # urwidtrees 1.0.3 is requested by the developer because 1.0.2 (which is packaged

pkgs/applications/networking/p2p/transmission/default.nix

@@ -72,9 +72,6 @@ in stdenv.mkDerivation {
 
   NIX_LDFLAGS = lib.optionalString stdenv.isDarwin "-framework CoreFoundation";
 
-  # Reduce the risk of collisions
-  postInstall = "rm -r $out/share/doc";
-
   meta = {
     description = "A fast, easy and free BitTorrent client";
     longDescription = ''

pkgs/applications/networking/syncthing/default.nix

@@ -3,17 +3,17 @@
 let
   common = { stname, target, postInstall ? "" }:
     buildGoModule rec {
-      version = "1.6.1";
+      version = "1.7.0";
       name = "${stname}-${version}";
 
       src = fetchFromGitHub {
         owner  = "syncthing";
         repo   = "syncthing";
         rev    = "v${version}";
-        sha256 = "1lhbx1mh2hdjjwks3s17i8y9vbl3fnapc1czaf42pp7nf8245q3j";
+        sha256 = "0jz1xfbs5ql9z7zdldyxc6wr0y5b0pf3vg8vzva5ml9aiqjcs9fg";
       };
 
-      vendorSha256 = "12g63a6jsshzqjgww792xmvybhfbkjx5aza4xnyljjsp453iky7k";
+      vendorSha256 = "1gmdv0g0gymq6khrwvplw6yfp146kg5ar8vqdp5dlp0myxfzi22b";
 
       patches = [
         ./add-stcli-target.patch

pkgs/applications/science/electronics/gtkwave/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "gtkwave";
-  version = "3.3.104";
+  version = "3.3.105";
 
   src = fetchurl {
     url    = "mirror://sourceforge/gtkwave/${pname}-gtk3-${version}.tar.gz";
-    sha256 = "1qvldbnlp3wkqr5ff93f6pdvv9yzij7lxfhpqlizakz08l1xb391";
+    sha256 = "1vifgyhwqhpipnzmsivncawqjqihcm5kyg3yyygmd0lmgljy9rs4";
   };
 
   nativeBuildInputs = [ pkgconfig wrapGAppsHook ];

pkgs/applications/science/molecular-dynamics/gromacs/default.nix

@@ -9,11 +9,11 @@
 }:
 
 stdenv.mkDerivation {
-  name = "gromacs-2020.2";
+  name = "gromacs-2020.3";
 
   src = fetchurl {
-    url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-2020.2.tar.gz";
+    url = "ftp://ftp.gromacs.org/pub/gromacs/gromacs-2020.3.tar.gz";
-    sha256 = "1wyjgcdl30wy4hy6jvi9lkq53bqs9fgfq6fri52dhnb3c76y8rbl";
+    sha256 = "1acjrhcfzpqy2dncblhj97602jbg9gdha4q1bgji9nrj25lq6cch";
   };
 
   nativeBuildInputs = [ cmake ];

pkgs/applications/science/robotics/qgroundcontrol/default.nix

@@ -1,4 +1,4 @@
-{ lib, mkDerivation, fetchgit, SDL2
+{ lib, mkDerivation, fetchFromGitHub, SDL2
 , qtbase, qtcharts, qtlocation, qtserialport, qtsvg, qtquickcontrols2
 , qtgraphicaleffects, qtspeech, qtx11extras, qmake, qttools
 , gst_all_1, wayland, pkgconfig
@@ -6,7 +6,7 @@
 
 mkDerivation rec {
   pname = "qgroundcontrol";
-  version = "4.0.8";
+  version = "4.0.9";
 
   qtInputs = [
     qtbase qtcharts qtlocation qtserialport qtsvg qtquickcontrols2
@@ -58,10 +58,11 @@ mkDerivation rec {
   '';
 
   # TODO: package mavlink so we can build from a normal source tarball
-  src = fetchgit {
+  src = fetchFromGitHub {
-    url = "https://github.com/mavlink/qgroundcontrol.git";
+    owner = "mavlink";
+    repo = pname;
     rev = "v${version}";
-    sha256 = "0jr9jpjqdwizsvh9zm0fdp8k2r4536m40dxrn30fbr3ba8vnzkgq";
+    sha256 = "0fwibgb9wmxk2zili5vsibi2q6pk1gna21870y5abx4scbvhgq68";
     fetchSubmodules = true;
   };
 

pkgs/applications/version-management/git-and-tools/delta/default.nix

@@ -9,16 +9,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "delta";
-  version = "0.2.0";
+  version = "0.3.0";
 
   src = fetchFromGitHub {
     owner = "dandavison";
     repo = pname;
     rev = version;
-    sha256 = "15c7rsmiinnpxh12520jz3wr0j86vgzjq1ss5pf30fa7lcgicb32";
+    sha256 = "0y3gkan5v0d6637yf5p5a9dklyv5zngw7a8pyqzj4ixys72ixg20";
   };
 
-  cargoSha256 = "0lzz32qh80s4dxr0d4pg0qagkn549lr4vbqknl2l0cmlq1bvvq6g";
+  cargoSha256 = "15sh2lsc16nf9w7sp3avy77f4vyj0rdsm6m1bn60y8gmv2r16v6i";
 
   nativeBuildInputs = [ installShellFiles ];
 

pkgs/applications/version-management/gitea/default.nix

@@ -8,11 +8,11 @@ with stdenv.lib;
 
 buildGoPackage rec {
   pname = "gitea";
-  version = "1.12.1";
+  version = "1.12.2";
 
   src = fetchurl {
     url = "https://github.com/go-gitea/gitea/releases/download/v${version}/gitea-src-${version}.tar.gz";
-    sha256 = "0n92msf5pbgb5q6pa2p0nj9lnzs4y0qis62c5mp4hp8rc1j22wlb";
+    sha256 = "12zzb1c4cl07ccxaravkmia8vdyw5ffxrlx9v95ampvv6a0swpb9";
   };
 
   unpackPhase = ''

pkgs/applications/video/vdr/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchurl, fontconfig, libjpeg, libcap, freetype, fribidi, pkgconfig
-, gettext, systemd, perl, lib
+, gettext, systemd, perl, lib, fetchpatch
 , enableSystemd ? true
 , enableBidi ? true
 }: stdenv.mkDerivation rec {
@@ -12,6 +12,11 @@
     sha256 = "1p51b14aqzncx3xpfg0rjplc48pg7520035i5p6r5zzkqhszihr5";
   };
 
+  patches = [
+    # Derived from http://git.tvdr.de/?p=vdr.git;a=commit;h=930c2cd2eb8947413e88404fa94c66e4e1db5ad6
+    ./glibc2.31-compat.patch
+  ];
+
   enableParallelBuilding = true;
 
   postPatch = "substituteInPlace Makefile --replace libsystemd-daemon libsystemd";

pkgs/applications/video/vdr/glibc2.31-compat.patch

@@ -0,0 +1,15 @@
+diff --git a/eit.c b/eit.c
+index 50d8229..373dbca 100644
+--- a/eit.c
++++ b/eit.c
+@@ -391,7 +391,9 @@ cTDT::cTDT(const u_char *Data)
+   if (abs(diff) > MAX_TIME_DIFF) {
+      mutex.Lock();
+      if (abs(diff) > MAX_ADJ_DIFF) {
+-        if (stime(&dvbtim) == 0)
++        timespec ts = { 0 };
++        ts.tv_sec = dvbtim;
++        if (clock_settime(CLOCK_REALTIME, &ts) == 0)
+            isyslog("system time changed from %s (%ld) to %s (%ld)", *TimeToString(loctim), loctim, *TimeToString(dvbtim), dvbtim);
+         else
+            esyslog("ERROR while setting system time: %m");

pkgs/applications/video/webtorrent_desktop/default.nix

@@ -1,14 +1,16 @@
 {
-  alsaLib, atk, cairo, cups, dbus, dpkg, expat, fetchurl, fontconfig, freetype,
+  alsaLib, atk, cairo, cups, dbus, dpkg, expat, fetchurl, fetchzip, fontconfig, freetype,
-  gdk-pixbuf, glib, gnome2, libX11, libXScrnSaver, libXcomposite, libXcursor,
+  gdk-pixbuf, glib, gnome3, libX11, libXScrnSaver, libXcomposite, libXcursor,
   libXdamage, libXext, libXfixes, libXi, libXrandr, libXrender, libXtst,
-  libxcb, nspr, nss, stdenv, udev
+  libxcb, nspr, nss, stdenv, udev, libuuid, pango, at-spi2-atk, at-spi2-core
 }:
 
   let
     rpath = stdenv.lib.makeLibraryPath ([
     alsaLib
     atk
+    at-spi2-core
+    at-spi2-atk
     cairo
     cups
     dbus
@@ -17,9 +19,9 @@
     freetype
     gdk-pixbuf
     glib
-    gnome2.GConf
+    gnome3.gtk
-    gnome2.gtk
+    pango
-    gnome2.pango
+    libuuid
     libX11
     libXScrnSaver
     libXcomposite
@@ -39,29 +41,33 @@
     ]);
   in stdenv.mkDerivation rec {
     pname = "webtorrent-desktop";
-    version = "0.20.0";
+    version = "0.21.0";
 
     src =
       if stdenv.hostPlatform.system == "x86_64-linux" then
-        fetchurl {
+        fetchzip {
-          url = "https://github.com/webtorrent/webtorrent-desktop/releases/download/v0.20.0/webtorrent-desktop_${version}-1_amd64.deb";
+          url = "https://github.com/webtorrent/webtorrent-desktop/releases/download/v${version}/WebTorrent-v${version}-linux.zip";
-          sha256 = "1kkrnbimiip5pn2nwpln35bbdda9gc3cgrjwphq4fqasbjf2781k";
+          sha256 = "13gd8isq2l10kibsc1bsc15dbgpnwa7nw4cwcamycgx6pfz9a852";
         }
         else
           throw "Webtorrent is not currently supported on ${stdenv.hostPlatform.system}";
+    desktopFile = fetchurl {
+      url = "https://raw.githubusercontent.com/webtorrent/webtorrent-desktop/v${version}/static/linux/share/applications/webtorrent-desktop.desktop";
+      sha256 = "1v16dqbxqds3cqg3xkzxsa5fyd8ssddvjhy9g3i3lz90n47916ca";
+    };
+    icon256File = fetchurl {
+      url = "https://raw.githubusercontent.com/webtorrent/webtorrent-desktop/v${version}/static/linux/share/icons/hicolor/256x256/apps/webtorrent-desktop.png";
+      sha256 = "1dapxvvp7cx52zhyaby4bxm4rll9xc7x3wk8k0il4g3mc7zzn3yk";
+    };
+    icon48File = fetchurl {
+      url = "https://raw.githubusercontent.com/webtorrent/webtorrent-desktop/v${version}/static/linux/share/icons/hicolor/48x48/apps/webtorrent-desktop.png";
+      sha256 = "00y96w9shbbrdbf6xcjlahqd08154kkrxmqraik7qshiwcqpw7p4";
+    };
     phases = [ "unpackPhase" "installPhase" ];
     nativeBuildInputs = [ dpkg ];
-    unpackPhase = "dpkg-deb -x $src .";
     installPhase = ''
-      mkdir -p $out
+      mkdir -p $out/share/{applications,icons/hicolor/{48x48,256x256}/apps}
-      cp -R opt $out
+      cp -R . $out/libexec
-
-      mv ./usr/share $out/share
-      mv $out/opt/webtorrent-desktop $out/libexec
-      chmod +x $out/libexec/WebTorrent
-      rmdir $out/opt
-
-      chmod -R g-w $out
 
       # Patch WebTorrent
       patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
@@ -71,9 +77,11 @@
       mkdir -p $out/bin
       ln -s $out/libexec/WebTorrent $out/bin/WebTorrent
 
-      # Fix the desktop link
+      cp $icon48File $out/share/icons/hicolor/48x48/apps/webtorrent-desktop.png
-      substituteInPlace $out/share/applications/webtorrent-desktop.desktop \
+      cp $icon256File $out/share/icons/hicolor/256x256/apps/webtorrent-desktop.png
-        --replace /opt/webtorrent-desktop $out/bin
+      ## Fix the desktop link
+      substitute $desktopFile $out/share/applications/webtorrent-desktop.desktop \
+        --replace /opt/webtorrent-desktop $out/libexec
     '';
 
     meta = with stdenv.lib; {

pkgs/build-support/bintools-wrapper/default.nix

@@ -132,15 +132,15 @@ stdenv.mkDerivation {
       ldPath="${bintools_bin}/bin"
     ''
 
+    # Solaris needs an additional ld wrapper.
     + optionalString (targetPlatform.isSunOS && nativePrefix != "") ''
-      # Solaris needs an additional ld wrapper.
       ldPath="${nativePrefix}/bin"
       exec="$ldPath/${targetPrefix}ld"
       wrap ld-solaris ${./ld-solaris-wrapper.sh}
     '')
 
+    # Create a symlink to as (the assembler).
     + ''
-      # Create a symlink to as (the assembler).
       if [ -e $ldPath/${targetPrefix}as ]; then
         ln -s $ldPath/${targetPrefix}as $out/bin/${targetPrefix}as
       fi
@@ -200,26 +200,29 @@ stdenv.mkDerivation {
   ];
 
   postFixup =
+    ##
+    ## General libc support
+    ##
     optionalString (libc != null) (''
-      ##
+      touch "$out/nix-support/libc-ldflags"
-      ## General libc support
+      echo "-L${libc_lib}${libc.libdir or "/lib"}" >> $out/nix-support/libc-ldflags
-      ##
-
-      echo "-L${libc_lib}${libc.libdir or "/lib"}" > $out/nix-support/libc-ldflags
 
       echo "${libc_lib}" > $out/nix-support/orig-libc
       echo "${libc_dev}" > $out/nix-support/orig-libc-dev
+    ''
 
-      ##
+    ##
-      ## Dynamic linker support
+    ## Dynamic linker support
-      ##
+    ##
-
+    + ''
       if [[ -z ''${dynamicLinker+x} ]]; then
         echo "Don't know the name of the dynamic linker for platform '${targetPlatform.config}', so guessing instead." >&2
         local dynamicLinker="${libc_lib}/lib/ld*.so.?"
       fi
+    ''
 
-      # Expand globs to fill array of options
+    # Expand globs to fill array of options
+    + ''
       dynamicLinker=($dynamicLinker)
 
       case ''${#dynamicLinker[@]} in
@@ -228,58 +231,56 @@ stdenv.mkDerivation {
         *) echo "Multiple dynamic linkers found for platform '${targetPlatform.config}'." >&2;;
       esac
 
-      if [ -n "''${dynamicLinker:-}" ]; then
+      if [ -n "''${dynamicLinker-}" ]; then
         echo $dynamicLinker > $out/nix-support/dynamic-linker
 
     '' + (if targetPlatform.isDarwin then ''
         printf "export LD_DYLD_PATH=%q\n" "$dynamicLinker" >> $out/nix-support/setup-hook
-    '' else ''
+      '' else ''
         if [ -e ${libc_lib}/lib/32/ld-linux.so.2 ]; then
           echo ${libc_lib}/lib/32/ld-linux.so.2 > $out/nix-support/dynamic-linker-m32
         fi
-
+      ''
-        local ldflagsBefore=(-dynamic-linker "$dynamicLinker")
-    '') + ''
-      fi
-
       # The dynamic linker is passed in `ldflagsBefore' to allow
       # explicit overrides of the dynamic linker by callers to ld
       # (the *last* value counts, so ours should come first).
-      printWords "''${ldflagsBefore[@]}" > $out/nix-support/libc-ldflags-before
+      + ''
+        echo -dynamic-linker "$dynamicLinker" >> $out/nix-support/libc-ldflags-before
+    '') + ''
+      fi
     '')
 
+    # Ensure consistent LC_VERSION_MIN_MACOSX and remove LC_UUID.
     + optionalString stdenv.targetPlatform.isMacOS ''
-      # Ensure consistent LC_VERSION_MIN_MACOSX and remove LC_UUID.
       echo "-macosx_version_min 10.12 -sdk_version 10.12 -no_uuid" >> $out/nix-support/libc-ldflags-before
     ''
 
-    + optionalString (!nativeTools) ''
+    ##
-      ##
+    ## User env support
-      ## User env support
+    ##
-      ##
 
-      # Propagate the underling unwrapped bintools so that if you
+    # Propagate the underling unwrapped bintools so that if you
-      # install the wrapper, you get tools like objdump (same for any
+    # install the wrapper, you get tools like objdump (same for any
-      # binaries of libc).
+    # binaries of libc).
+    + optionalString (!nativeTools) ''
       printWords ${bintools_bin} ${if libc == null then "" else libc_bin} > $out/nix-support/propagated-user-env-packages
     ''
 
+    ##
+    ## Man page and info support
+    ##
     + optionalString propagateDoc (''
-      ##
-      ## Man page and info support
-      ##
-
       ln -s ${bintools.man} $man
     '' + optionalString (bintools ? info) ''
       ln -s ${bintools.info} $info
     '')
 
-    + ''
+    ##
-      ##
+    ## Hardening support
-      ## Hardening support
+    ##
-      ##
 
-      # some linkers on some platforms don't support specific -z flags
+    # some linkers on some platforms don't support specific -z flags
+    + ''
       export hardening_unsupported_flags=""
       if [[ "$($ldPath/${targetPrefix}ld -z now 2>&1 || true)" =~ un(recognized|known)\ option ]]; then
         hardening_unsupported_flags+=" bindnow"
@@ -304,15 +305,18 @@ stdenv.mkDerivation {
     ''
 
     + ''
+      for flags in "$out/nix-support"/*flags*; do
+        substituteInPlace "$flags" --replace $'\n' ' '
+      done
+
       substituteAll ${./add-flags.sh} $out/nix-support/add-flags.sh
       substituteAll ${./add-hardening.sh} $out/nix-support/add-hardening.sh
       substituteAll ${../wrapper-common/utils.bash} $out/nix-support/utils.bash
-
-      ##
-      ## Extra custom steps
-      ##
     ''
 
+    ##
+    ## Extra custom steps
+    ##
     + extraBuildCommands;
 
   inherit dynamicLinker expand-response-params;

pkgs/build-support/cc-wrapper/add-flags.sh

@@ -37,6 +37,14 @@ if [ -e @out@/nix-support/libc-cflags ]; then
     NIX_CFLAGS_COMPILE_@suffixSalt@="$(< @out@/nix-support/libc-cflags) $NIX_CFLAGS_COMPILE_@suffixSalt@"
 fi
 
+if [ -e @out@/nix-support/libcxx-cxxflags ]; then
+    NIX_CXXSTDLIB_COMPILE_@suffixSalt@+=" $(< @out@/nix-support/libcxx-cxxflags)"
+fi
+
+if [ -e @out@/nix-support/libcxx-ldflags ]; then
+    NIX_CXXSTDLIB_LINK_@suffixSalt@+=" $(< @out@/nix-support/libcxx-ldflags)"
+fi
+
 if [ -e @out@/nix-support/cc-cflags ]; then
     NIX_CFLAGS_COMPILE_@suffixSalt@="$(< @out@/nix-support/cc-cflags) $NIX_CFLAGS_COMPILE_@suffixSalt@"
 fi

pkgs/build-support/cc-wrapper/cc-wrapper.sh

@@ -129,7 +129,7 @@ fi
 
 if [[ "$isCpp" = 1 ]]; then
     if [[ "$cppInclude" = 1 ]]; then
-        NIX_CFLAGS_COMPILE_@suffixSalt@+=" ${NIX_CXXSTDLIB_COMPILE_@suffixSalt@:-@default_cxx_stdlib_compile@}"
+        NIX_CFLAGS_COMPILE_@suffixSalt@+=" $NIX_CXXSTDLIB_COMPILE_@suffixSalt@"
     fi
     NIX_CFLAGS_LINK_@suffixSalt@+=" $NIX_CXXSTDLIB_LINK_@suffixSalt@"
 fi

pkgs/build-support/cc-wrapper/default.nix

@@ -48,12 +48,6 @@ let
   # The wrapper scripts use 'cat' and 'grep', so we may need coreutils.
   coreutils_bin = if nativeTools then "" else getBin coreutils;
 
-  default_cxx_stdlib_compile = if (targetPlatform.isLinux && !(cc.isGNU or false) && !nativeTools && cc ? gcc) && !(targetPlatform.useLLVM or false) then
-    "-isystem $(echo -n ${cc.gcc}/include/c++/*) -isystem $(echo -n ${cc.gcc}/include/c++/*)/${targetPlatform.config}"
-  else if targetPlatform.isDarwin && (libcxx != null) && (cc.isClang or false) && !(targetPlatform.useLLVM or false) then
-    "-isystem ${libcxx}/include/c++/v1"
-  else "";
-
   # The "suffix salt" is a arbitrary string added in the end of env vars
   # defined by cc-wrapper's hooks so that multiple cc-wrappers can be used
   # without interfering. For the moment, it is defined as the target triple,
@@ -68,7 +62,7 @@ let
 
   # older compilers (for example bootstrap's GCC 5) fail with -march=too-modern-cpu
   isGccArchSupported = arch:
-    if cc.isGNU or false then
+    if isGNU then
       { skylake        = versionAtLeast ccVersion "6.0";
         skylake-avx512 = versionAtLeast ccVersion "6.0";
         cannonlake     = versionAtLeast ccVersion "8.0";
@@ -76,7 +70,7 @@ let
         icelake-server = versionAtLeast ccVersion "8.0";
         knm            = versionAtLeast ccVersion "8.0";
       }.${arch} or true
-    else if cc.isClang or false then
+    else if isClang then
       { cannonlake     = versionAtLeast ccVersion "5.0";
         icelake-client = versionAtLeast ccVersion "7.0";
         icelake-server = versionAtLeast ccVersion "7.0";
@@ -116,7 +110,7 @@ stdenv.mkDerivation {
     # Binutils, and Apple's "cctools"; "bintools" as an attempt to find an
     # unused middle-ground name that evokes both.
     inherit bintools;
-    inherit libc nativeTools nativeLibc nativePrefix isGNU isClang default_cxx_stdlib_compile;
+    inherit libc nativeTools nativeLibc nativePrefix isGNU isClang;
 
     emacsBufferSetup = pkgs: ''
       ; We should handle propagation here too
@@ -160,21 +154,21 @@ stdenv.mkDerivation {
       ccPath="${cc}/bin"
     '')
 
+    # Create symlinks to everything in the bintools wrapper.
     + ''
-      # Create symlinks to everything in the bintools wrapper.
       for bbin in $bintools/bin/*; do
         mkdir -p "$out/bin"
         ln -s "$bbin" "$out/bin/$(basename $bbin)"
       done
+    ''
 
-      # We export environment variables pointing to the wrapped nonstandard
+    # We export environment variables pointing to the wrapped nonstandard
-      # cmds, lest some lousy configure script use those to guess compiler
+    # cmds, lest some lousy configure script use those to guess compiler
-      # version.
+    # version.
+    + ''
       export named_cc=${targetPrefix}cc
       export named_cxx=${targetPrefix}c++
 
-      export default_cxx_stdlib_compile="${default_cxx_stdlib_compile}"
-
       if [ -e $ccPath/${targetPrefix}gcc ]; then
         wrap ${targetPrefix}gcc $wrapper $ccPath/${targetPrefix}gcc
         ln -s ${targetPrefix}gcc $out/bin/${targetPrefix}cc
@@ -226,7 +220,7 @@ stdenv.mkDerivation {
 
   strictDeps = true;
   propagatedBuildInputs = [ bintools ] ++ extraTools ++ optionals cc.langD or false [ zlib ];
-  depsTargetTargetPropagated = extraPackages;
+  depsTargetTargetPropagated = optional (libcxx != null) libcxx ++ extraPackages;
 
   wrapperName = "CC_WRAPPER";
 
@@ -236,12 +230,19 @@ stdenv.mkDerivation {
   ];
 
   postFixup =
+    # Ensure flags files exists, as some other programs cat them. (That these
+    # are considered an exposed interface is a bit dubious, but fine for now.)
     ''
-      # Backwards compatability for packages expecting this file, e.g. with
+      touch "$out/nix-support/cc-cflags"
-      # `$NIX_CC/nix-support/dynamic-linker`.
+      touch "$out/nix-support/cc-ldflags"
-      #
+    ''
-      # TODO(@Ericson2314): Remove this after stable release and force
+
-      # everyone to refer to bintools-wrapper directly.
+    # Backwards compatability for packages expecting this file, e.g. with
+    # `$NIX_CC/nix-support/dynamic-linker`.
+    #
+    # TODO(@Ericson2314): Remove this after stable release and force
+    # everyone to refer to bintools-wrapper directly.
+    + ''
       if [[ -f "$bintools/nix-support/dynamic-linker" ]]; then
         ln -s "$bintools/nix-support/dynamic-linker" "$out/nix-support"
       fi
@@ -250,22 +251,42 @@ stdenv.mkDerivation {
       fi
     ''
 
-    + optionalString (libc != null) (''
+    ##
-      ##
+    ## General Clang support
-      ## General libc support
+    ##
-      ##
+    + optionalString isClang ''
 
-      # The "-B${libc_lib}/lib/" flag is a quick hack to force gcc to link
+      echo "-target ${targetPlatform.config}" >> $out/nix-support/cc-cflags
-      # against the crt1.o from our own glibc, rather than the one in
+    ''
-      # /usr/lib.  (This is only an issue when using an `impure'
+
-      # compiler/linker, i.e., one that searches /usr/lib and so on.)
+    ##
-      #
+    ## GCC libs for non-GCC support
-      # Unfortunately, setting -B appears to override the default search
+    ##
-      # path. Thus, the gcc-specific "../includes-fixed" directory is
+    + optionalString (isClang && libcxx == null && cc ? gcc) ''
-      # now longer searched and glibc's <limits.h> header fails to
+
-      # compile, because it uses "#include_next <limits.h>" to find the
+      echo "-B${cc.gcc}/lib/gcc/${targetPlatform.config}/${cc.gcc.version}" >> $out/nix-support/cc-cflags
-      # limits.h file in ../includes-fixed. To remedy the problem,
+      echo "-L${cc.gcc}/lib/gcc/${targetPlatform.config}/${cc.gcc.version}" >> $out/nix-support/cc-ldflags
-      # another -idirafter is necessary to add that directory again.
+      echo "-L${cc.gcc.lib}/${targetPlatform.config}/lib" >> $out/nix-support/cc-ldflags
+    ''
+
+    ##
+    ## General libc support
+    ##
+
+    # The "-B${libc_lib}/lib/" flag is a quick hack to force gcc to link
+    # against the crt1.o from our own glibc, rather than the one in
+    # /usr/lib.  (This is only an issue when using an `impure'
+    # compiler/linker, i.e., one that searches /usr/lib and so on.)
+    #
+    # Unfortunately, setting -B appears to override the default search
+    # path. Thus, the gcc-specific "../includes-fixed" directory is
+    # now longer searched and glibc's <limits.h> header fails to
+    # compile, because it uses "#include_next <limits.h>" to find the
+    # limits.h file in ../includes-fixed. To remedy the problem,
+    # another -idirafter is necessary to add that directory again.
+    + optionalString (libc != null) (''
+      touch "$out/nix-support/libc-cflags"
+      touch "$out/nix-support/libc-ldflags"
       echo "-B${libc_lib}${libc.libdir or "/lib/"}" >> $out/nix-support/libc-cflags
     '' + optionalString (!(cc.langD or false)) ''
       echo "-idirafter ${libc_dev}${libc.incdir or "/include"}" >> $out/nix-support/libc-cflags
@@ -279,15 +300,39 @@ stdenv.mkDerivation {
       echo "${libc_dev}" > $out/nix-support/orig-libc-dev
     '')
 
-    + optionalString (!nativeTools) ''
+    ##
-      ##
+    ## General libc++ support
-      ## Initial CFLAGS
+    ##
-      ##
 
-      # GCC shows ${cc_solib}/lib in `gcc -print-search-dirs', but not
+    # We have a libc++ directly, we have one via "smuggled" GCC, or we have one
-      # ${cc_solib}/lib64 (even though it does actually search there...)..
+    # bundled with the C compiler because it is GCC
-      # This confuses libtool.  So add it to the compiler tool search
+    + optionalString (libcxx != null || cc.gcc.langCC or false || (isGNU && cc.langCC or false)) ''
-      # path explicitly.
+      touch "$out/nix-support/libcxx-cxxflags"
+      touch "$out/nix-support/libcxx-ldflags"
+    '' + optionalString (libcxx == null && cc ? gcc) ''
+      for dir in ${cc.gcc}/include/c++/*; do
+        echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
+      done
+      for dir in ${cc.gcc}/include/c++/*/${targetPlatform.config}; do
+        echo "-isystem $dir" >> $out/nix-support/libcxx-cxxflags
+      done
+    ''
+    + optionalString (libcxx.isLLVM or false) (''
+      echo "-isystem ${libcxx}/include/c++/v1" >> $out/nix-support/libcxx-cxxflags
+      echo "-stdlib=libc++" >> $out/nix-support/libcxx-ldflags
+    '' + stdenv.lib.optionalString stdenv.targetPlatform.isLinux ''
+      echo "-lc++abi" >> $out/nix-support/libcxx-ldflags
+    '')
+
+    ##
+    ## Initial CFLAGS
+    ##
+
+    # GCC shows ${cc_solib}/lib in `gcc -print-search-dirs', but not
+    # ${cc_solib}/lib64 (even though it does actually search there...)..
+    # This confuses libtool.  So add it to the compiler tool search
+    # path explicitly.
+    + optionalString (!nativeTools) ''
       if [ -e "${cc_solib}/lib64" -a ! -L "${cc_solib}/lib64" ]; then
         ccLDFlags+=" -L${cc_solib}/lib64"
         ccCFlags+=" -B${cc_solib}/lib64"
@@ -296,32 +341,34 @@ stdenv.mkDerivation {
       ccCFlags+=" -B${cc_solib}/lib"
 
     '' + optionalString cc.langAda or false ''
+      touch "$out/nix-support/gnat-cflags"
+      touch "$out/nix-support/gnat-ldflags"
       basePath=$(echo $cc/lib/*/*/*)
       ccCFlags+=" -B$basePath -I$basePath/adainclude"
       gnatCFlags="-I$basePath/adainclude -I$basePath/adalib"
 
-      echo "$gnatCFlags" > $out/nix-support/gnat-cflags
+      echo "$gnatCFlags" >> $out/nix-support/gnat-cflags
     '' + ''
-      echo "$ccLDFlags" > $out/nix-support/cc-ldflags
+      echo "$ccLDFlags" >> $out/nix-support/cc-ldflags
-      echo "$ccCFlags" > $out/nix-support/cc-cflags
+      echo "$ccCFlags" >> $out/nix-support/cc-cflags
     '' + optionalString (targetPlatform.isDarwin && (libcxx != null) && (cc.isClang or false)) ''
       echo " -L${libcxx}/lib" >> $out/nix-support/cc-ldflags
-    '' + optionalString propagateDoc ''
+    ''
-      ##
-      ## Man page and info support
-      ##
 
+    ##
+    ## Man page and info support
+    ##
+    + optionalString propagateDoc ''
       ln -s ${cc.man} $man
       ln -s ${cc.info} $info
     '' + optionalString (cc.langD or false) ''
       echo "-B${zlib}${zlib.libdir or "/lib/"}" >> $out/nix-support/libc-cflags
     ''
 
+    ##
+    ## Hardening support
+    ##
     + ''
-      ##
-      ## Hardening support
-      ##
-
       export hardening_unsupported_flags="${builtins.concatStringsSep " " (cc.hardeningUnsupportedFlags or [])}"
     ''
 
@@ -389,19 +436,18 @@ stdenv.mkDerivation {
     # There are a few tools (to name one libstdcxx5) which do not work
     # well with multi line flags, so make the flags single line again
     + ''
-      if [ -e "$out/nix-support/libc-cflags" ]; then
+      for flags in "$out/nix-support"/*flags*; do
-        substituteInPlace "$out/nix-support/libc-cflags" --replace $'\n' ' '
+        substituteInPlace "$flags" --replace $'\n' ' '
-      fi
+      done
 
       substituteAll ${./add-flags.sh} $out/nix-support/add-flags.sh
       substituteAll ${./add-hardening.sh} $out/nix-support/add-hardening.sh
       substituteAll ${../wrapper-common/utils.bash} $out/nix-support/utils.bash
-
-      ##
-      ## Extra custom steps
-      ##
     ''
 
+    ##
+    ## Extra custom steps
+    ##
     + extraBuildCommands;
 
   inherit expand-response-params;

pkgs/build-support/rust/default.nix

@@ -199,7 +199,7 @@ stdenv.mkDerivation (args // {
       -executable ! \( -regex ".*\.\(so.[0-9.]+\|so\|a\|dylib\)" \))
   '';
 
-  checkPhase = args.checkPhase or (let
+  installCheckPhase = args.checkPhase or (let
     argstr = "${stdenv.lib.optionalString (checkType == "release") "--release"} --target ${rustTarget} --frozen";
   in ''
     ${stdenv.lib.optionalString (buildAndTestSubdir != null) "pushd ${buildAndTestSubdir}"}

pkgs/build-support/setup-hooks/auto-patchelf.sh

@@ -141,7 +141,7 @@ autoPatchelfFile() {
     # This makes sure the builder fails if we didn't find a dependency, because
     # the stdenv setup script is run with set -e. The actual error is emitted
     # earlier in the previous loop.
-    [ $depNotFound -eq 0 ]
+    [ $depNotFound -eq 0 -o -n "$autoPatchelfIgnoreMissingDeps" ]
 
     if [ -n "$rpath" ]; then
         echo "setting RPATH to: $rpath" >&2

pkgs/build-support/setup-hooks/multiple-outputs.sh

@@ -61,7 +61,7 @@ _multioutConfig() {
             local shareDocName="$(sed -n "s/^PACKAGE_TARNAME='\(.*\)'$/\1/p" < "$confScript")"
         fi
                                     # PACKAGE_TARNAME sometimes contains garbage.
-        if [ -n "$shareDocName" ] || echo "$shareDocName" | grep -q '[^a-zA-Z0-9_-]'; then
+        if [ -z "$shareDocName" ] || echo "$shareDocName" | grep -q '[^a-zA-Z0-9_-]'; then
             shareDocName="$(echo "$name" | sed 's/-[^a-zA-Z].*//')"
         fi
     fi

pkgs/data/fonts/jetbrains-mono/default.nix

@@ -1,14 +1,14 @@
 { lib, fetchzip }:
 
 let
-  version = "1.0.6";
+  version = "2.000";
 in
-fetchzip rec {
+fetchzip {
   name = "JetBrainsMono-${version}";
 
-  url = "https://github.com/JetBrains/JetBrainsMono/releases/download/v${version}/JetBrainsMono-${version}.zip";
+  url = "https://github.com/JetBrains/JetBrainsMono/releases/download/v${version}/JetBrains.Mono.${version}.zip";
 
-  sha256 = "1198k5zw91g85h6n7rg3y7wcj1nrbby9zlr6zwlmiq0nb37n0d3g";
+  sha256 = "1kmb0fckiwaphqxw08xd5fbfjrwnwxz48bidj16ixw8lgcr29b8g";
 
   postFetch = ''
     mkdir -p $out/share/fonts

pkgs/data/icons/iconpack-jade/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "iconpack-jade";
-  version = "1.22";
+  version = "1.23";
 
   src = fetchFromGitHub {
     owner = "madmaxms";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1piypv8wdxnfiy6kgh7i3wi52m4fh4x874kh01qjmymssyirn17x";
+    sha256 = "1q29ikfssn1vmwws3dry4ssq6b44afd9sb7dwv3rdqg0frabpj1m";
   };
 
   nativeBuildInputs = [ gtk3 ];

pkgs/data/themes/cdetheme/default.nix

@@ -1,7 +1,7 @@
 { stdenv, fetchFromGitHub, python2Packages }:
 
 stdenv.mkDerivation rec {
-  pname = "cde-motif-theme";
+  pname = "cdetheme";
   version = "1.3";
 
   src = fetchFromGitHub {
@@ -29,5 +29,6 @@ stdenv.mkDerivation rec {
     license = licenses.gpl3;
     platforms = platforms.all;
     maintainers = with maintainers; [ gnidorah ];
+    hydraPlatforms = [];
   };
 }

pkgs/desktops/gnome-3/core/gnome-initial-setup/default.nix

@@ -36,11 +36,11 @@
 
 stdenv.mkDerivation rec {
   pname = "gnome-initial-setup";
-  version = "3.36.3";
+  version = "3.36.4";
 
   src = fetchurl {
     url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "11f2yj8q844gks3jkfbi4ap448snz1wjflqbq4y2kk12r3w37afq";
+    sha256 = "17szzz2a5wpi7kwjnhimiwf8vg0bfliyk3k0adgv1pw2mcfpxp5s";
   };
 
   nativeBuildInputs = [

pkgs/desktops/gnome-3/core/mutter/default.nix

@@ -1,6 +1,7 @@
 { fetchurl
 , fetchpatch
 , substituteAll
+, runCommand
 , stdenv
 , pkgconfig
 , gnome3
@@ -42,7 +43,7 @@
 , wayland-protocols
 }:
 
-stdenv.mkDerivation rec {
+let self = stdenv.mkDerivation rec {
   pname = "mutter";
   version = "3.36.4";
 
@@ -132,6 +133,18 @@ stdenv.mkDerivation rec {
   '';
 
   passthru = {
+    libdir = "${self}/lib/mutter-6";
+
+    tests = {
+      libdirExists = runCommand "mutter-libdir-exists" {} ''
+        if [[ ! -d ${self.libdir} ]]; then
+          echo "passthru.libdir should contain a directory, “${self.libdir}” is not one."
+          exit 1
+        fi
+        touch $out
+      '';
+    };
+
     updateScript = gnome3.updateScript {
       packageName = pname;
       attrPath = "gnome3.${pname}";
@@ -145,4 +158,5 @@ stdenv.mkDerivation rec {
     maintainers = teams.gnome.members;
     platforms = platforms.linux;
   };
-}
+};
+in self

pkgs/desktops/gnome-3/extensions/dash-to-panel/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "gnome-shell-dash-to-panel";
-  version = "31";
+  version = "38";
 
   src = fetchFromGitHub {
     owner = "home-sweet-gnome";
     repo = "dash-to-panel";
     rev = "v${version}";
-    sha256 = "0vh36mdncjvfp1jbinifznj5dw3ahsswwm3m9sjw5gydsbx6vh83";
+    sha256 = "1kvybb49l1vf0fvh8d0c6xkwnry8m330scamf5x40y63d4i213j1";
   };
 
   buildInputs = [

pkgs/desktops/gnome-3/extensions/system-monitor/default.nix

@@ -1,14 +1,14 @@
-{ stdenv, substituteAll, fetchFromGitHub, glib, glib-networking, libgtop, gnome3 }:
+{ stdenv, substituteAll, fetchpatch, fetchFromGitHub, glib, glib-networking, libgtop, gnome3 }:
 
 stdenv.mkDerivation rec {
   pname = "gnome-shell-system-monitor";
-  version = "38";
+  version = "2020-04-27-unstable";
 
   src = fetchFromGitHub {
     owner = "paradoxxxzero";
     repo = "gnome-shell-system-monitor-applet";
-    rev = "v${version}";
+    rev = "7f8f0a7b255473941f14d1dcaa35ebf39d3bccd0";
-    sha256 = "1sdj2kxb418mgq44a6lf6jic33wlfbnn3ja61igmx0jj1530iknv";
+    sha256 = "tUUvBY0UEUE+T79zVZEAICpKoriFZuuZzi9ArdHdXks=";
   };
 
   buildInputs = [
@@ -20,6 +20,7 @@ stdenv.mkDerivation rec {
   patches = [
     (substituteAll {
       src = ./paths_and_nonexisting_dirs.patch;
+      clutter_path = gnome3.mutter.libdir; # this should not be used in settings but 🤷‍♀️
       gtop_path = "${libgtop}/lib/girepository-1.0";
       glib_net_path = "${glib-networking}/lib/girepository-1.0";
     })
@@ -41,8 +42,5 @@ stdenv.mkDerivation rec {
     license = licenses.gpl3Plus;
     maintainers = with maintainers; [ tiramiseb ];
     homepage = "https://github.com/paradoxxxzero/gnome-shell-system-monitor-applet";
-    # 3.36 support not yet ready
-    # https://github.com/paradoxxxzero/gnome-shell-system-monitor-applet/pull/564
-    broken = stdenv.lib.versionAtLeast gnome3.gnome-shell.version "3.34";
   };
 }

pkgs/desktops/gnome-3/extensions/system-monitor/paths_and_nonexisting_dirs.patch

@@ -1,5 +1,5 @@
 diff --git a/system-monitor@paradoxxx.zero.gmail.com/extension.js b/system-monitor@paradoxxx.zero.gmail.com/extension.js
-index b4b7f15..d139135 100644
+index de5e3d7..2d7824d 100644
 --- a/system-monitor@paradoxxx.zero.gmail.com/extension.js
 +++ b/system-monitor@paradoxxx.zero.gmail.com/extension.js
 @@ -18,6 +18,9 @@
@@ -11,13 +11,23 @@ index b4b7f15..d139135 100644
 +
  /* Ugly. This is here so that we don't crash old libnm-glib based shells unnecessarily
   * by loading the new libnm.so. Should go away eventually */
- const libnm_glib = imports.gi.GIRepository.Repository.get_default().is_registered("NMClient", "1.0");
+ 
-@@ -386,7 +389,7 @@ const smMountsMonitor = new Lang.Class({
+@@ -407,7 +410,7 @@ const smMountsMonitor = class SystemMonitor_smMountsMonitor {
-     connected: false,
+         this.connected = false;
-     _init: function () {
+ 
          this._volumeMonitor = Gio.VolumeMonitor.get();
 -        let sys_mounts = ['/home', '/tmp', '/boot', '/usr', '/usr/local'];
 +        let sys_mounts = ['/home', '/tmp', '/boot'];
          this.base_mounts = ['/'];
-         sys_mounts.forEach(Lang.bind(this, function (sMount) {
+         sys_mounts.forEach((sMount) => {
              if (this.is_sys_mount(sMount + '/')) {
+diff --git a/system-monitor@paradoxxx.zero.gmail.com/prefs.js b/system-monitor@paradoxxx.zero.gmail.com/prefs.js
+index 81d667c..0da4809 100644
+--- a/system-monitor@paradoxxx.zero.gmail.com/prefs.js
++++ b/system-monitor@paradoxxx.zero.gmail.com/prefs.js
+@@ -1,3 +1,5 @@
++imports.gi.GIRepository.Repository.prepend_search_path('@clutter_path@');
++
+ const Gtk = imports.gi.Gtk;
+ const Gio = imports.gi.Gio;
+ const Gdk = imports.gi.Gdk;

pkgs/desktops/gnome-3/games/gnome-taquin/default.nix

@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "gnome-taquin";
-  version = "3.36.3";
+  version = "3.36.4";
 
   src = fetchurl {
     url = "mirror://gnome/sources/gnome-taquin/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "149bv8q2a44i9msyshhh57nxwf5a43hankbndbvjqvq95yqlnhv4";
+    sha256 = "0awfssqpswsyla4gn80ifj53biwq34hcadxlknnlm7jpz0z38cp0";
   };
 
   passthru = {

pkgs/desktops/gnome-3/games/tali/default.nix

@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "tali";
-  version = "3.36.1";
+  version = "3.36.4";
 
   src = fetchurl {
     url = "mirror://gnome/sources/tali/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "1klnxk49rr1m2lr4zj1wvfl0iaxzdh2k8ngrcmfmcq39vlxnn94y";
+    sha256 = "12h6783m4634zzprlk31j0dmvgzrfjklhl0z49fdwcziw5bszr3c";
   };
 
   passthru = {

pkgs/development/arduino/platformio/chrootenv.nix

@@ -1,4 +1,4 @@
-{ lib, buildFHSUserEnv }:
+{ lib, buildFHSUserEnv, fetchFromGitHub }:
 
 let
   pio-pkgs = pkgs:
@@ -19,6 +19,14 @@ let
       platformio
     ]);
 
+  src = fetchFromGitHub {
+    owner = "platformio";
+    repo = "platformio-core";
+    rev = "v4.3.4";
+    sha256 = "0vf2j79319ypr4yrdmx84853igkb188sjfvlxgw06rlsvsm3kacq";
+  };
+
+
 in buildFHSUserEnv {
   name = "platformio";
 
@@ -34,7 +42,10 @@ in buildFHSUserEnv {
   };
 
   extraInstallCommands = ''
+    mkdir -p $out/lib/udev/rules.d
+
     ln -s $out/bin/platformio $out/bin/pio
+    ln -s ${src}/scripts/99-platformio-udev.rules $out/lib/udev/rules.d/99-platformio-udev.rules
   '';
 
   runScript = "platformio";

pkgs/development/arduino/platformio/core.nix

@@ -82,6 +82,7 @@ in buildPythonApplication rec {
   patches = [
     ./fix-searchpath.patch
     ./use-local-spdx-license-list.patch
+    ./missing-udev-rules-nixos.patch
   ];
 
   postPatch = ''

pkgs/development/arduino/platformio/missing-udev-rules-nixos.patch

@@ -0,0 +1,14 @@
+diff --git a/platformio/exception.py b/platformio/exception.py
+index d291ad7f..4761a35b 100644
+--- a/platformio/exception.py
++++ b/platformio/exception.py
+@@ -195,7 +195,8 @@ class MissedUdevRules(InvalidUdevRules):
+ 
+     MESSAGE = (
+         "Warning! Please install `99-platformio-udev.rules`. \nMode details: "
+-        "https://docs.platformio.org/en/latest/faq.html#platformio-udev-rules"
++        "https://docs.platformio.org/en/latest/faq.html#platformio-udev-rules\n"
++        "On NixOS add the platformio package to services.udev.packages"
+     )
+ 
+ 

pkgs/development/compilers/adoptopenjdk-bin/sources.json

@@ -5,39 +5,45 @@
         "hotspot": {
           "aarch64": {
             "build": "10",
-            "sha256": "04b77f6754aed68528f39750c5cfd6a439190206aff216aa081d62a0e1a794fa",
+            "sha256": "3b8b8bba6a0472ec7de5271cbf67f11e6ab525de6dd5d4729300375f1d56b7a1",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jdk_aarch64_linux_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jdk_aarch64_linux_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           },
           "armv6l": {
             "build": "10",
-            "sha256": "ab5b76203e54fe7a5221535f6f407efa43153de029a746f60af3cffb7cb5080b",
+            "sha256": "45c235af67498f87e3dc99642771e57547cf226335eaee8a55d195173e66a2e9",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jdk_arm_linux_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jdk_arm_linux_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           },
           "armv7l": {
             "build": "10",
-            "sha256": "ab5b76203e54fe7a5221535f6f407efa43153de029a746f60af3cffb7cb5080b",
+            "sha256": "45c235af67498f87e3dc99642771e57547cf226335eaee8a55d195173e66a2e9",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jdk_arm_linux_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jdk_arm_linux_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           },
           "packageType": "jdk",
           "vmType": "hotspot",
           "x86_64": {
             "build": "10",
-            "sha256": "330d19a2eaa07ed02757d7a785a77bab49f5ee710ea03b4ee2fa220ddd0feffc",
+            "sha256": "ee60304d782c9d5654bf1a6b3f38c683921c1711045e1db94525a51b7024a2ca",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jdk_x64_linux_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jdk_x64_linux_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         },
         "openj9": {
+          "aarch64": {
+            "build": "10",
+            "sha256": "0be01fdcae330e26c489d8d0d0c98c535a2af8cbd0cdcda211776ab9fcd05086",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10_openj9-0.20.0/OpenJDK11U-jdk_aarch64_linux_openj9_11.0.7_10_openj9-0.20.0.tar.gz",
+            "version": "11.0.7"
+          },
           "packageType": "jdk",
           "vmType": "openj9",
           "x86_64": {
             "build": "10",
-            "sha256": "1530172ee98edd129954fcdca1bf725f7b30c8bfc3cdc381c88de96b7d19e690",
+            "sha256": "526e89f3014fec473b24c10c2464c1343e23703114983fd171b68b1599bba561",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10_openj9-0.18.1/OpenJDK11U-jdk_x64_linux_openj9_11.0.6_10_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10_openj9-0.20.0/OpenJDK11U-jdk_x64_linux_openj9_11.0.7_10_openj9-0.20.0.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         }
       },
@@ -45,27 +51,45 @@
         "hotspot": {
           "aarch64": {
             "build": "10",
-            "sha256": "7ed04ed9ed7271528e7f03490f1fd7dfbbc2d391414bd6fe4dd80ec3bad76d30",
+            "sha256": "cfe504e9e9621b831a5cfd800a2005dafe90a1d11aa14ee35d7b674d68685698",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jre_aarch64_linux_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jre_aarch64_linux_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
+          },
+          "armv6l": {
+            "build": "10",
+            "sha256": "581bae8efcaa40e209a780baa6f96b7c8c9397965bc6d54533f4fd8599d5c742",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jre_arm_linux_hotspot_11.0.7_10.tar.gz",
+            "version": "11.0.7"
+          },
+          "armv7l": {
+            "build": "10",
+            "sha256": "581bae8efcaa40e209a780baa6f96b7c8c9397965bc6d54533f4fd8599d5c742",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jre_arm_linux_hotspot_11.0.7_10.tar.gz",
+            "version": "11.0.7"
           },
           "packageType": "jre",
           "vmType": "hotspot",
           "x86_64": {
             "build": "10",
-            "sha256": "c5a4e69e2be0e3e5f5bb7c759960b20650967d0f571baad4a7f15b2c03bda352",
+            "sha256": "74b493dd8a884dcbee29682ead51b182d9d3e52b40c3d4cbb3167c2fd0063503",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jre_x64_linux_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jre_x64_linux_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         },
         "openj9": {
+          "aarch64": {
+            "build": "10",
+            "sha256": "37ae26443abb02d2ab041eced9be948f0d20db03183aaf3c159ef682eeeabf9b",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10_openj9-0.20.0/OpenJDK11U-jre_aarch64_linux_openj9_11.0.7_10_openj9-0.20.0.tar.gz",
+            "version": "11.0.7"
+          },
           "packageType": "jre",
           "vmType": "openj9",
           "x86_64": {
             "build": "10",
-            "sha256": "056e4b5f7166f5daa44f36b06c735913bda52831d2e77fa2ac371505c66d10c1",
+            "sha256": "08258a767a6953bde21d15ef3c08e776d83257afa4acc52b55c70e1ac02f0489",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10_openj9-0.18.1/OpenJDK11U-jre_x64_linux_openj9_11.0.6_10_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10_openj9-0.20.0/OpenJDK11U-jre_x64_linux_openj9_11.0.7_10_openj9-0.20.0.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         }
       }
@@ -77,9 +101,9 @@
           "vmType": "hotspot",
           "x86_64": {
             "build": "10",
-            "sha256": "b87102274d983bf6bb0aa6c2c623301d0ff5eb7f61043ffd04abb00f962c2dcd",
+            "sha256": "0ab1e15e8bd1916423960e91b932d2b17f4c15b02dbdf9fa30e9423280d9e5cc",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jdk_x64_mac_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jdk_x64_mac_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         },
         "openj9": {
@@ -87,9 +111,9 @@
           "vmType": "openj9",
           "x86_64": {
             "build": "10",
-            "sha256": "9a5c5b3bb51a82e666c46b2d1bbafa8c2bbc3aae50194858c8f96c5d43a96f64",
+            "sha256": "a0de749c37802cc233ac58ffde68191a4dc985c71b626e7c0ff53944f743427f",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10_openj9-0.18.1/OpenJDK11U-jdk_x64_mac_openj9_11.0.6_10_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10.2_openj9-0.20.0/OpenJDK11U-jdk_x64_mac_openj9_11.0.7_10_openj9-0.20.0.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         }
       },
@@ -99,9 +123,9 @@
           "vmType": "hotspot",
           "x86_64": {
             "build": "10",
-            "sha256": "ab3c2038a32c62843500109d2efb8f5dacdfa1de3cbb713c8226f26dc603cc33",
+            "sha256": "931a81f4bed38c48b364db57d4ebdd6e4b4ea1466e9bd0eaf8e0f1e47c4569e9",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10/OpenJDK11U-jre_x64_mac_hotspot_11.0.6_10.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10/OpenJDK11U-jre_x64_mac_hotspot_11.0.7_10.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         },
         "openj9": {
@@ -109,9 +133,9 @@
           "vmType": "openj9",
           "x86_64": {
             "build": "10",
-            "sha256": "130850133d9701393352c2ce13ab541b4f900ff1f5ddf8257cda624968aada9f",
+            "sha256": "0941d739e3230d1d83dc1ee54cff6d17d90331e4f275d00739cb78fba41c5b96",
-            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.6%2B10_openj9-0.18.1/OpenJDK11U-jre_x64_mac_openj9_11.0.6_10_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-11.0.7%2B10.2_openj9-0.20.0/OpenJDK11U-jre_x64_mac_openj9_11.0.7_10_openj9-0.20.0.tar.gz",
-            "version": "11.0.6"
+            "version": "11.0.7"
           }
         }
       }
@@ -122,68 +146,68 @@
       "jdk": {
         "hotspot": {
           "aarch64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "74f4110333ac4239564ed864b1d7d69b7af32af39efcfbde9816e1486cb5ae07",
+            "sha256": "0e6081cb51f8a6f3062bef4f4c45dbe1fccfd3f3b4b5d52522a3edb76581e3af",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jdk_aarch64_linux_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jdk_aarch64_linux_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           },
           "armv6l": {
-            "build": "33",
+            "build": "8",
-            "sha256": "477e1b8d26a220d6d570765e9e0a4a34dbb489fab63a420d0859d173efc59adb",
+            "sha256": "9beec080f2b2a7f6883b024272f4e8d5a0b027325e83647be318215781af1d1a",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jdk_arm_linux_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jdk_arm_linux_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           },
           "armv7l": {
-            "build": "33",
+            "build": "8",
-            "sha256": "477e1b8d26a220d6d570765e9e0a4a34dbb489fab63a420d0859d173efc59adb",
+            "sha256": "9beec080f2b2a7f6883b024272f4e8d5a0b027325e83647be318215781af1d1a",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jdk_arm_linux_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jdk_arm_linux_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           },
           "packageType": "jdk",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "e562caeffa89c834a69a44242d802eae3523875e427f07c05b1902c152638368",
+            "sha256": "9ccc063569f19899fd08e41466f8c4cd4e05058abdb5178fa374cb365dcf5998",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jdk_x64_linux_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jdk_x64_linux_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         },
         "openj9": {
           "packageType": "jdk",
           "vmType": "openj9",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "68ebab0021c719694be8fc868478725a69c5c515cdb62e2933eefe87ba6437df",
+            "sha256": "aeecf6d30d0c847db81d07793cf97e5dc44890c29366d7d9f8f9f397f6c52590",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33_openj9-0.16.0/OpenJDK13U-jdk_x64_linux_openj9_13_33_openj9-0.16.0.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8_openj9-0.18.0/OpenJDK13U-jdk_x64_linux_openj9_13.0.2_8_openj9-0.18.0.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         }
       },
       "jre": {
         "hotspot": {
           "aarch64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "2365b7fbba8d9125fb091933aad9f38f8cc1fbb0217cdec9ec75d2000f6d451a",
+            "sha256": "6c4b69d1609f4c65c576c80d6aa101de80048f8ce5566f890e8fff5349228bae",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jre_aarch64_linux_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jre_aarch64_linux_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           },
           "packageType": "jre",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "73800a0d7c4e81df408a8518d282aa2c001ce4ee15541574c639dfc3564f708f",
+            "sha256": "897f16fe8e056395209e35d2384013bd1ff250e717465769079e3f4793628c34",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jre_x64_linux_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jre_x64_linux_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         },
         "openj9": {
           "packageType": "jre",
           "vmType": "openj9",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "2ee59be5062a81daa7be85be161cab6b245f9a2e2cbd4769ae9edefaac41e31d",
+            "sha256": "a0ab38607811e282f64082edc68a2dea3fa6a5113391efb124a6d7d02883110a",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33_openj9-0.16.0/OpenJDK13U-jre_x64_linux_openj9_13_33_openj9-0.16.0.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8_openj9-0.18.0/OpenJDK13U-jre_x64_linux_openj9_13.0.2_8_openj9-0.18.0.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         }
       }
@@ -194,20 +218,20 @@
           "packageType": "jdk",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "f948be96daba250b6695e22cb51372d2ba3060e4d778dd09c89548889783099f",
+            "sha256": "0ddb24efdf5aab541898d19b7667b149a1a64a8bd039b708fc58ee0284fa7e07",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jdk_x64_mac_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jdk_x64_mac_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         },
         "openj9": {
           "packageType": "jdk",
           "vmType": "openj9",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "583e0defd5c062550896ead7cac383be16f1a81d9b6492dfec26da9af5dcc1c0",
+            "sha256": "dd8d92eec98a3455ec5cd065a0a6672cc1aef280c6a68c507c372ccc1d98fbaa",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33_openj9-0.16.0/OpenJDK13U-jdk_x64_mac_openj9_13_33_openj9-0.16.0.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8_openj9-0.18.0/OpenJDK13U-jdk_x64_mac_openj9_13.0.2_8_openj9-0.18.0.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         }
       },
@@ -216,20 +240,20 @@
           "packageType": "jre",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "1c23efba7908de9a611a98e755602f45381a8f7c957adb3fc4012ab1369a352c",
+            "sha256": "3149b9ebf0db1eaf2dc152df9efae82003e7971efb1cf550060e6a4798fe8c5c",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33/OpenJDK13U-jre_x64_mac_hotspot_13_33.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8/OpenJDK13U-jre_x64_mac_hotspot_13.0.2_8.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         },
         "openj9": {
           "packageType": "jre",
           "vmType": "openj9",
           "x86_64": {
-            "build": "33",
+            "build": "8",
-            "sha256": "33a60b78138d50cb02325156c7d1fcf588697749a4401f6c11a3cbefa3033127",
+            "sha256": "6a8a636fca4c7e368241e232a37cd73c9867cdec8f0869fd158b1f58c6128cc2",
-            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13%2B33_openj9-0.16.0/OpenJDK13U-jre_x64_mac_openj9_13_33_openj9-0.16.0.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk13-binaries/releases/download/jdk-13.0.2%2B8_openj9-0.18.0/OpenJDK13U-jre_x64_mac_openj9_13.0.2_8_openj9-0.18.0.tar.gz",
-            "version": "13.0.0"
+            "version": "13.0.2"
           }
         }
       }
@@ -241,51 +265,39 @@
         "hotspot": {
           "aarch64": {
             "build": "9",
-            "sha256": "35799a2fd4b467115aff1bc3a54853b5131ba9068e53e1ab0fbe5521a3f2ba83",
+            "sha256": "536bf397d98174b376da9ed49d2f659d65c7310318d8211444f4b7ba7c15e453",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jdk_aarch64_linux_hotspot_8u232b09.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jdk_aarch64_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.232"
+            "version": "8.0.252"
           },
           "armv6l": {
             "build": "9",
-            "sha256": "fdd9f61f1b2df74242da54ee3b3231b0123782a917e9673351276da439c7cab1",
+            "sha256": "5b401ad3c9b246281bd6df34b1abaf75e10e5cad9c6b26b55232b016e90e411a",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jdk_arm_linux_hotspot_8u232b09.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jdk_arm_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.232"
+            "version": "8.0.252"
           },
           "armv7l": {
             "build": "9",
-            "sha256": "fdd9f61f1b2df74242da54ee3b3231b0123782a917e9673351276da439c7cab1",
+            "sha256": "5b401ad3c9b246281bd6df34b1abaf75e10e5cad9c6b26b55232b016e90e411a",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jdk_arm_linux_hotspot_8u232b09.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jdk_arm_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.232"
+            "version": "8.0.252"
-          },
-          "armv6l": {
-            "build": "10",
-            "sha256": "7b3d6ade8c25adca01095ba66642132d8c87a1a8caf3883850e34778453afcec",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u222-b10/OpenJDK8U-jdk_arm_linux_hotspot_8u222b10.tar.gz",
-            "version": "8.0.222"
-          },
-          "armv7l": {
-            "build": "10",
-            "sha256": "7b3d6ade8c25adca01095ba66642132d8c87a1a8caf3883850e34778453afcec",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u222-b10/OpenJDK8U-jdk_arm_linux_hotspot_8u222b10.tar.gz",
-            "version": "8.0.222"
           },
           "packageType": "jdk",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "f39b523c724d0e0047d238eb2bb17a9565a60574cf651206c867ee5fc000ab43",
+            "sha256": "2b59b5282ff32bce7abba8ad6b9fde34c15a98f949ad8ae43e789bbd78fc8862",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08/OpenJDK8U-jdk_x64_linux_hotspot_8u242b08.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jdk_x64_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         },
         "openj9": {
           "packageType": "jdk",
           "vmType": "openj9",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "ca785af638b24f9d4df896f5a9f557cc9f1e5fa5e2b1174d6b906e3fd5474c2e",
+            "sha256": "910ae847109a6dd1b6cf69baa7615ea2cce8cff787e5a9349a5331ce7604f3a5",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08_openj9-0.18.1/OpenJDK8U-jdk_x64_linux_openj9_8u242b08_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09_openj9-0.20.0/OpenJDK8U-jdk_x64_linux_openj9_8u252b09_openj9-0.20.0.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         }
       },
@@ -293,51 +305,39 @@
         "hotspot": {
           "aarch64": {
             "build": "9",
-            "sha256": "4540db665260fdc84ae2f191e21beec9168a70a4227718bee5edd317707e2fda",
+            "sha256": "30bba4425497f5b4aabcba7b45db69d582d278fb17357d64c22c9dc6b2d29ca1",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jre_aarch64_linux_hotspot_8u232b09.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jre_aarch64_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.232"
+            "version": "8.0.252"
           },
           "armv6l": {
             "build": "9",
-            "sha256": "8ab786fc2fa0a282f5cf57f6040f1976c32c3c5e480e900ce5925de6543f6688",
+            "sha256": "107699a88f611e0c2d57816be25821ef9b17db860b14402c4e9e5bf0b9cf16fd",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jre_arm_linux_hotspot_8u232b09.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jre_arm_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.232"
+            "version": "8.0.252"
           },
           "armv7l": {
             "build": "9",
-            "sha256": "8ab786fc2fa0a282f5cf57f6040f1976c32c3c5e480e900ce5925de6543f6688",
+            "sha256": "107699a88f611e0c2d57816be25821ef9b17db860b14402c4e9e5bf0b9cf16fd",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jre_arm_linux_hotspot_8u232b09.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jre_arm_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.232"
+            "version": "8.0.252"
-          },
-          "armv6l": {
-            "build": "10",
-            "sha256": "19de77b74812b90851816bdb991d6473488a10d3ac293c6accf46ae9b1f714a0",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u222-b10/OpenJDK8U-jre_arm_linux_hotspot_8u222b10.tar.gz",
-            "version": "8.0.222"
-          },
-          "armv7l": {
-            "build": "10",
-            "sha256": "19de77b74812b90851816bdb991d6473488a10d3ac293c6accf46ae9b1f714a0",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u222-b10/OpenJDK8U-jre_arm_linux_hotspot_8u222b10.tar.gz",
-            "version": "8.0.222"
           },
           "packageType": "jre",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "5edfaefdbb0469d8b24d61c8aef80c076611053b1738029c0232b9a632fe2708",
+            "sha256": "a93be303ed62398dba9acb0376fb3caf8f488fcde80dc62d0a8e46256b3adfb1",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08/OpenJDK8U-jre_x64_linux_hotspot_8u242b08.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09/OpenJDK8U-jre_x64_linux_hotspot_8u252b09.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         },
         "openj9": {
           "packageType": "jre",
           "vmType": "openj9",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "985d3134b64c6196d4c9ddbc87af0c62b0e643cef71b29f3d25a8c7811811745",
+            "sha256": "5c0ab4691ff5f8e69bb14462f2afb8d73d751b01048eacf4b426ed6d6646dc63",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08_openj9-0.18.1/OpenJDK8U-jre_x64_linux_openj9_8u242b08_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09_openj9-0.20.0/OpenJDK8U-jre_x64_linux_openj9_8u252b09_openj9-0.20.0.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         }
       }
@@ -348,20 +348,20 @@
           "packageType": "jdk",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "06675b7d65bce0313ee1f2e888dd44267e8afeced75e0b39b5ad1f5fdff54e0b",
+            "sha256": "2caed3ec07d108bda613f9b4614b22a8bdd196ccf2a432a126161cd4077f07a5",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08/OpenJDK8U-jdk_x64_mac_hotspot_8u242b08.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09.1/OpenJDK8U-jdk_x64_mac_hotspot_8u252b09.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         },
         "openj9": {
           "packageType": "jdk",
           "vmType": "openj9",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "665dc9c8239b7270b007ab9dd7522570e2686e327d89caf57a6aa6e5c6450078",
+            "sha256": "f522061a23290bce3423e49025a95b6e78d6f30e2741817e83c8fdba4c0c4ae7",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08_openj9-0.18.1/OpenJDK8U-jdk_x64_mac_openj9_8u242b08_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09.2_openj9-0.20.0/OpenJDK8U-jdk_x64_mac_openj9_8u252b09_openj9-0.20.0.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         }
       },
@@ -370,23 +370,23 @@
           "packageType": "jre",
           "vmType": "hotspot",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "fae3777e3441dc7384c339a9054aa7efc40cd2c501625a535c2d4648367ccca3",
+            "sha256": "f8206f0fef194c598de6b206a4773b2e517154913ea0e26c5726091562a034c8",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08/OpenJDK8U-jre_x64_mac_hotspot_8u242b08.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09.1/OpenJDK8U-jre_x64_mac_hotspot_8u252b09.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         },
         "openj9": {
           "packageType": "jre",
           "vmType": "openj9",
           "x86_64": {
-            "build": "8",
+            "build": "9",
-            "sha256": "d4a924558ddda0aed671a67f71714b71c25871a7659fd4c505851cf5ee866de5",
+            "sha256": "55cce54a39c5748360e2e3fe8edf04469b75a0783514853a5745463979b43c80",
-            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u242-b08_openj9-0.18.1/OpenJDK8U-jre_x64_mac_openj9_8u242b08_openj9-0.18.1.tar.gz",
+            "url": "https://github.com/AdoptOpenJDK/openjdk8-binaries/releases/download/jdk8u252-b09.2_openj9-0.20.0/OpenJDK8U-jre_x64_mac_openj9_8u252b09_openj9-0.20.0.tar.gz",
-            "version": "8.0.242"
+            "version": "8.0.252"
           }
         }
       }
     }
   }
-}
+}

pkgs/development/compilers/emscripten/fastcomp/emscripten-fastcomp.nix

@@ -2,6 +2,7 @@
 
 let
   rev = emscriptenVersion;
+  haveGcc = stdenv.cc.isGNU || stdenv.cc.cc ? gcc;
   gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc;
 in
 stdenv.mkDerivation rec {
@@ -34,7 +35,7 @@ stdenv.mkDerivation rec {
     #"-DLLVM_CONFIG=${llvm}/bin/llvm-config"
     "-DLLVM_BUILD_TESTS=ON"
     "-DCLANG_INCLUDE_TESTS=ON"
-  ] ++ (stdenv.lib.optional stdenv.isLinux
+  ] ++ (stdenv.lib.optional (stdenv.isLinux && haveGcc)
     # necessary for clang to find crtend.o
     "-DGCC_INSTALL_PREFIX=${gcc}"
   );
@@ -42,6 +43,7 @@ stdenv.mkDerivation rec {
 
   passthru = {
     isClang = true;
+  } // stdenv.lib.optionalAttrs haveGcc {
     inherit gcc;
   };
 

pkgs/development/compilers/gcc/4.9/default.nix

@@ -63,6 +63,7 @@ let majorVersion = "4";
 
     patches =
       [ ../use-source-date-epoch.patch ../parallel-bconfig.patch ./parallel-strsignal.patch
+        ./libsanitizer.patch
         (fetchpatch {
           name = "avoid-ustat-glibc-2.28.patch";
           url = "https://gitweb.gentoo.org/proj/gcc-patches.git/plain/4.9.4/gentoo/100_all_avoid-ustat-glibc-2.28.patch?id=55fcb515620a8f7d3bb77eba938aa0fcf0d67c96";

pkgs/development/compilers/gcc/4.9/libsanitizer.patch

@@ -0,0 +1,24 @@
+diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
+index aec950454..5bda9b3a3 100644
+--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
+@@ -156,18 +156,13 @@ namespace __sanitizer {
+ #elif defined(__sparc__)
+ # if defined(__arch64__)
+     unsigned mode;
+-    unsigned short __pad1;
+-# else
+-    unsigned short __pad1;
+-    unsigned short mode;
+     unsigned short __pad2;
+ # endif
+     unsigned short __seq;
+     unsigned long long __unused1;
+     unsigned long long __unused2;
+ #else
+-    unsigned short mode;
+-    unsigned short __pad1;
++    unsigned int mode;
+     unsigned short __seq;
+     unsigned short __pad2;
+ #if defined(__x86_64__) && !defined(_LP64)

pkgs/development/compilers/gcc/6/0001-Fix-build-for-glibc-2.31.patch

@@ -0,0 +1,62 @@
+From 8b55f1047cf3491429c1af607e5dac08a81db6e1 Mon Sep 17 00:00:00 2001
+From: Maximilian Bosch <maximilian@mbosch.me>
+Date: Thu, 20 Feb 2020 15:08:36 +0100
+Subject: [PATCH] Fix build for glibc 2.31
+
+---
+ .../sanitizer_platform_limits_posix.cc            |  5 +++--
+ .../sanitizer_platform_limits_posix.h             | 15 +--------------
+ 2 files changed, 4 insertions(+), 16 deletions(-)
+
+diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
+index 069d8d557..c49c28c6e 100644
+--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
+@@ -1130,8 +1130,9 @@ CHECK_SIZE_AND_OFFSET(ipc_perm, cgid);
+ #ifndef __GLIBC_PREREQ
+ #define __GLIBC_PREREQ(x, y) 0
+ #endif
+-#if !defined(__aarch64__) || !SANITIZER_LINUX || __GLIBC_PREREQ (2, 21)
+-/* On aarch64 glibc 2.20 and earlier provided incorrect mode field.  */
++#if !SANITIZER_LINUX || __GLIBC_PREREQ (2, 31)
++/* glibc 2.30 and earlier provided 16-bit mode field instead of 32-bit
++   on many architectures.  */
+ CHECK_SIZE_AND_OFFSET(ipc_perm, mode);
+ #endif
+ 
+diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
+index 304d04e39..568081a79 100644
+--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
+@@ -200,27 +200,14 @@ namespace __sanitizer {
+     unsigned __seq;
+     u64 __unused1;
+     u64 __unused2;
+-#elif defined(__mips__) || defined(__aarch64__)
+-    unsigned int mode;
+-    unsigned short __seq;
+-    unsigned short __pad1;
+-    unsigned long __unused1;
+-    unsigned long __unused2;
+ #elif defined(__sparc__)
+-# if defined(__arch64__)
+     unsigned mode;
+-    unsigned short __pad1;
+-# else
+-    unsigned short __pad1;
+-    unsigned short mode;
+     unsigned short __pad2;
+-# endif
+     unsigned short __seq;
+     unsigned long long __unused1;
+     unsigned long long __unused2;
+ #else
+-    unsigned short mode;
+-    unsigned short __pad1;
++    unsigned int mode;
+     unsigned short __seq;
+     unsigned short __pad2;
+ #if defined(__x86_64__) && !defined(_LP64)
+-- 
+2.25.0
+

pkgs/development/compilers/gcc/6/default.nix

@@ -65,7 +65,7 @@ let majorVersion = "6";
     inherit (stdenv) buildPlatform hostPlatform targetPlatform;
 
     patches =
-      [ ../use-source-date-epoch.patch ]
+      [ ../use-source-date-epoch.patch ./0001-Fix-build-for-glibc-2.31.patch ]
       ++ optional (targetPlatform != hostPlatform) ../libstdc++-target.patch
       ++ optional noSysDirs ../no-sys-dirs.patch
       ++ optional langAda ../gnat-cflags.patch

pkgs/development/compilers/gcc/7/0001-Fix-build-for-glibc-2.31.patch

@@ -0,0 +1,62 @@
+From 2d03b6eaf823fc2db6a32b4a95e18f8a7474b47f Mon Sep 17 00:00:00 2001
+From: Maximilian Bosch <maximilian@mbosch.me>
+Date: Thu, 20 Feb 2020 01:56:42 +0100
+Subject: [PATCH] Fix build for glibc 2.31
+
+---
+ .../sanitizer_platform_limits_posix.cc            |  5 +++--
+ .../sanitizer_platform_limits_posix.h             | 15 +--------------
+ 2 files changed, 4 insertions(+), 16 deletions(-)
+
+diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
+index 97eae3fc7..4089d4695 100644
+--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
+@@ -1145,8 +1145,9 @@ CHECK_SIZE_AND_OFFSET(ipc_perm, uid);
+ CHECK_SIZE_AND_OFFSET(ipc_perm, gid);
+ CHECK_SIZE_AND_OFFSET(ipc_perm, cuid);
+ CHECK_SIZE_AND_OFFSET(ipc_perm, cgid);
+-#if !defined(__aarch64__) || !SANITIZER_LINUX || __GLIBC_PREREQ (2, 21)
+-/* On aarch64 glibc 2.20 and earlier provided incorrect mode field.  */
++#if !SANITIZER_LINUX || __GLIBC_PREREQ (2, 31)
++/* glibc 2.30 and earlier provided 16-bit mode field instead of 32-bit
++   on many architectures.  */
+ CHECK_SIZE_AND_OFFSET(ipc_perm, mode);
+ #endif
+ 
+diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
+index c13932283..3456fb2db 100644
+--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.h
+@@ -204,27 +204,14 @@ namespace __sanitizer {
+     unsigned __seq;
+     u64 __unused1;
+     u64 __unused2;
+-#elif defined(__mips__) || defined(__aarch64__) || defined(__s390x__)
+-    unsigned int mode;
+-    unsigned short __seq;
+-    unsigned short __pad1;
+-    unsigned long __unused1;
+-    unsigned long __unused2;
+ #elif defined(__sparc__)
+-# if defined(__arch64__)
+     unsigned mode;
+-    unsigned short __pad1;
+-# else
+-    unsigned short __pad1;
+-    unsigned short mode;
+     unsigned short __pad2;
+-# endif
+     unsigned short __seq;
+     unsigned long long __unused1;
+     unsigned long long __unused2;
+ #else
+-    unsigned short mode;
+-    unsigned short __pad1;
++    unsigned int mode;
+     unsigned short __seq;
+     unsigned short __pad2;
+ #if defined(__x86_64__) && !defined(_LP64)
+-- 
+2.25.0
+

pkgs/development/compilers/gcc/7/default.nix

@@ -53,6 +53,8 @@ let majorVersion = "7";
         ./riscv-pthread-reentrant.patch
         # https://gcc.gnu.org/ml/gcc-patches/2018-03/msg00297.html
         ./riscv-no-relax.patch
+
+        ./0001-Fix-build-for-glibc-2.31.patch
       ]
       ++ optional (targetPlatform != hostPlatform) ../libstdc++-target.patch
       ++ optionals targetPlatform.isNetBSD [

pkgs/development/compilers/gcc/libstdc++-hook.sh

@@ -1,4 +0,0 @@
-# See pkgs/build-support/setup-hooks/role.bash
-getHostRole
-
-export NIX_CXXSTDLIB_COMPILE${role_post}+=" -isystem $(echo -n @gcc@/include/c++/*) -isystem $(echo -n @gcc@/include/c++/*)/@targetConfig@"

pkgs/development/compilers/go/1.13.nix

@@ -186,8 +186,11 @@ stdenv.mkDerivation rec {
 
     export PATH=$(pwd)/bin:$PATH
 
+    ${optionalString (stdenv.buildPlatform != stdenv.targetPlatform) ''
     # Independent from host/target, CC should produce code for the building system.
+    # We only set it when cross-compiling.
     export CC=${buildPackages.stdenv.cc}/bin/cc
+    ''}
     ulimit -a
   '';
 

pkgs/development/compilers/go/1.14.nix

@@ -193,8 +193,11 @@ stdenv.mkDerivation rec {
 
     export PATH=$(pwd)/bin:$PATH
 
+    ${optionalString (stdenv.buildPlatform != stdenv.targetPlatform) ''
     # Independent from host/target, CC should produce code for the building system.
+    # We only set it when cross-compiling.
     export CC=${buildPackages.stdenv.cc}/bin/cc
+    ''}
     ulimit -a
   '';
 

pkgs/development/compilers/jetbrains-jdk/default.nix

@@ -2,12 +2,12 @@
 
 openjdk11.overrideAttrs (oldAttrs: rec {
   pname = "jetbrains-jdk";
-  version = "11.0.6-b774";
+  version = "11.0.7-b64";
   src = fetchFromGitHub {
     owner = "JetBrains";
     repo = "JetBrainsRuntime";
     rev = "jb${stdenv.lib.replaceStrings ["."] ["_"] version}";
-    sha256 = "0lx3h74jwa14kr8ybwxbzc4jsjj6xnymvckdsrhqhvrciya7bxzw";
+    sha256 = "1gxqi6dkyriv9j29ppan638w1ns2g9m4q1sq7arf9kwqr05zim90";
   };
   patches = [];
   meta = with stdenv.lib; {

pkgs/development/compilers/llvm/10/default.nix

@@ -1,4 +1,4 @@
-{ lowPrio, newScope, pkgs, stdenv, cmake, gcc, libstdcxxHook
+{ lowPrio, newScope, pkgs, stdenv, cmake
 , libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith, wrapBintoolsWith
 , buildLlvmTools # tools, but from the previous stage, for cross
 , targetLlvmLibraries # libraries, but from the next stage, for cross
@@ -57,23 +57,17 @@ let
 
     libstdcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
+      libcxx = null; # libstdcxx is smuggled in with clang.gcc
       extraPackages = [
-        libstdcxxHook
         targetLlvmLibraries.compiler-rt
       ];
-      extraBuildCommands = ''
+      extraBuildCommands = mkExtraBuildCommands cc;
-          echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-          echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-          echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
-          echo "-L${gcc.cc.lib}/${targetConfig}/lib" >> $out/nix-support/cc-ldflags
-      '' + mkExtraBuildCommands cc;
     };
 
     libcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
       libcxx = targetLlvmLibraries.libcxx;
       extraPackages = [
-        targetLlvmLibraries.libcxx
         targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];
@@ -100,14 +94,12 @@ let
         inherit (tools) bintools;
       };
       extraPackages = [
-        targetLlvmLibraries.libcxx
         targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ] ++ stdenv.lib.optionals (!stdenv.targetPlatform.isWasm) [
         targetLlvmLibraries.libunwind
       ];
       extraBuildCommands = ''
-        echo "-target ${stdenv.targetPlatform.config}" >> $out/nix-support/cc-cflags
         echo "-rtlib=compiler-rt -Wno-unused-command-line-argument" >> $out/nix-support/cc-cflags
         echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags
       '' + stdenv.lib.optionalString (!stdenv.targetPlatform.isWasm) ''
@@ -127,7 +119,6 @@ let
         targetLlvmLibraries.compiler-rt
       ];
       extraBuildCommands = ''
-        echo "-target ${stdenv.targetPlatform.config}" >> $out/nix-support/cc-cflags
         echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags
         echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags
         echo "-nostdlib++" >> $out/nix-support/cc-cflags
@@ -145,7 +136,6 @@ let
         targetLlvmLibraries.compiler-rt
       ];
       extraBuildCommands = ''
-        echo "-target ${stdenv.targetPlatform.config}" >> $out/nix-support/cc-cflags
         echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags
         echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags
       '' + mkExtraBuildCommands cc;
@@ -161,7 +151,6 @@ let
       extraPackages = [ ];
       extraBuildCommands = ''
         echo "-nostartfiles" >> $out/nix-support/cc-cflags
-        echo "-target ${stdenv.targetPlatform.config}" >> $out/nix-support/cc-cflags
       '';
     };
 

pkgs/development/compilers/llvm/10/libc++/default.nix

@@ -39,12 +39,9 @@ stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
-  linkCxxAbi = stdenv.isLinux;
+  passthru = {
-
+    isLLVM = true;
-  setupHooks = [
+  };
-    ../../../../../build-support/setup-hooks/role.bash
-    ./setup-hook.sh
-  ];
 
   meta = {
     homepage = "https://libcxx.llvm.org/";

pkgs/development/compilers/llvm/10/libc++/setup-hook.sh

@@ -1,6 +0,0 @@
-# See pkgs/build-support/setup-hooks/role.bash
-getHostRole
-
-linkCxxAbi="@linkCxxAbi@"
-export NIX_CXXSTDLIB_COMPILE${role_post}+=" -isystem @out@/include/c++/v1"
-export NIX_CXXSTDLIB_LINK${role_post}=" -stdlib=libc++${linkCxxAbi:+" -lc++abi"}"

pkgs/development/compilers/llvm/5/compiler-rt.nix

@@ -47,6 +47,7 @@ stdenv.mkDerivation {
 
   patches = [
     ./compiler-rt-codesign.patch # Revert compiler-rt commit that makes codesign mandatory
+    ../7/compiler-rt-glibc.patch
   ] ++ stdenv.lib.optional stdenv.hostPlatform.isMusl ./sanitizers-nongnu.patch
     ++ stdenv.lib.optional (stdenv.hostPlatform.libc == "glibc") ./compiler-rt-sys-ustat.patch
     ++ stdenv.lib.optional stdenv.hostPlatform.isAarch32 ./compiler-rt-armv7l.patch;

pkgs/development/compilers/llvm/5/default.nix

@@ -1,4 +1,4 @@
-{ lowPrio, newScope, pkgs, stdenv, cmake, gcc, libstdcxxHook
+{ lowPrio, newScope, pkgs, stdenv, cmake
 , libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith
 , buildLlvmTools # tools, but from the previous stage, for cross
 , targetLlvmLibraries # libraries, but from the next stage, for cross
@@ -51,25 +51,17 @@ let
 
     libstdcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
-      extraTools = [
+      libcxx = null; # libstdcxx is smuggled in with clang.gcc
-        libstdcxxHook
-      ];
       extraPackages = [
         targetLlvmLibraries.compiler-rt
       ];
-      extraBuildCommands = ''
+      extraBuildCommands = mkExtraBuildCommands cc;
-          echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-          echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-          echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
-          echo "-L${gcc.cc.lib}/${targetConfig}/lib" >> $out/nix-support/cc-ldflags
-      '' + mkExtraBuildCommands cc;
     };
 
     libcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
       libcxx = targetLlvmLibraries.libcxx;
       extraPackages = [
-        targetLlvmLibraries.libcxx
         targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];

pkgs/development/compilers/llvm/5/libc++/default.nix

@@ -37,12 +37,9 @@ stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
-  linkCxxAbi = stdenv.isLinux;
+  passthru = {
-
+    isLLVM = true;
-  setupHooks = [
+  };
-    ../../../../../build-support/setup-hooks/role.bash
-    ./setup-hook.sh
-  ];
 
   meta = {
     homepage = "https://libcxx.llvm.org/";

pkgs/development/compilers/llvm/5/libc++/setup-hook.sh

@@ -1,6 +0,0 @@
-# See pkgs/build-support/setup-hooks/role.bash
-getHostRole
-
-linkCxxAbi="@linkCxxAbi@"
-export NIX_CXXSTDLIB_COMPILE${role_post}+=" -isystem @out@/include/c++/v1"
-export NIX_CXXSTDLIB_LINK${role_post}=" -stdlib=libc++${linkCxxAbi:+" -lc++abi"}"

pkgs/development/compilers/llvm/6/compiler-rt.nix

@@ -47,6 +47,7 @@ stdenv.mkDerivation {
 
   patches = [
     ./compiler-rt-codesign.patch # Revert compiler-rt commit that makes codesign mandatory
+    ../7/compiler-rt-glibc.patch
   ] ++ stdenv.lib.optional stdenv.hostPlatform.isMusl ./sanitizers-nongnu.patch
     ++ stdenv.lib.optional stdenv.hostPlatform.isAarch32 ./compiler-rt-armv7l.patch;
 

pkgs/development/compilers/llvm/6/default.nix

@@ -1,4 +1,4 @@
-{ lowPrio, newScope, pkgs, stdenv, cmake, gcc, libstdcxxHook
+{ lowPrio, newScope, pkgs, stdenv, cmake
 , libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith
 , buildLlvmTools # tools, but from the previous stage, for cross
 , targetLlvmLibraries # libraries, but from the next stage, for cross
@@ -51,25 +51,17 @@ let
 
     libstdcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
-      extraTools = [
+      libcxx = null; # libstdcxx is smuggled in with clang.gcc
-        libstdcxxHook
-      ];
       extraPackages = [
         targetLlvmLibraries.compiler-rt
       ];
-      extraBuildCommands = ''
+      extraBuildCommands = mkExtraBuildCommands cc;
-          echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-          echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-          echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
-          echo "-L${gcc.cc.lib}/${targetConfig}/lib" >> $out/nix-support/cc-ldflags
-      '' + mkExtraBuildCommands cc;
     };
 
     libcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
       libcxx = targetLlvmLibraries.libcxx;
       extraPackages = [
-        targetLlvmLibraries.libcxx
         targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];

pkgs/development/compilers/llvm/6/libc++/default.nix

@@ -37,12 +37,9 @@ stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
-  linkCxxAbi = stdenv.isLinux;
+  passthru = {
-
+    isLLVM = true;
-  setupHooks = [
+  };
-    ../../../../../build-support/setup-hooks/role.bash
-    ./setup-hook.sh
-  ];
 
   meta = {
     homepage = "https://libcxx.llvm.org/";

pkgs/development/compilers/llvm/6/libc++/setup-hook.sh

@@ -1,6 +0,0 @@
-# See pkgs/build-support/setup-hooks/role.bash
-getHostRole
-
-linkCxxAbi="@linkCxxAbi@"
-export NIX_CXXSTDLIB_COMPILE${role_post}+=" -isystem @out@/include/c++/v1"
-export NIX_CXXSTDLIB_LINK${role_post}=" -stdlib=libc++${linkCxxAbi:+" -lc++abi"}"

pkgs/development/compilers/llvm/7/compiler-rt-glibc.patch

@@ -0,0 +1,48 @@
+diff --git a/lib/sanitizer_common/sanitizer_platform_limits_posix.cc b/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
+index 54da635..c5dc1cd 100644
+--- a/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
++++ b/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
+@@ -1158,8 +1158,9 @@ CHECK_SIZE_AND_OFFSET(ipc_perm, uid);
+ CHECK_SIZE_AND_OFFSET(ipc_perm, gid);
+ CHECK_SIZE_AND_OFFSET(ipc_perm, cuid);
+ CHECK_SIZE_AND_OFFSET(ipc_perm, cgid);
+-#if !defined(__aarch64__) || !SANITIZER_LINUX || __GLIBC_PREREQ (2, 21)
+-/* On aarch64 glibc 2.20 and earlier provided incorrect mode field.  */
++#if !SANITIZER_LINUX || __GLIBC_PREREQ (2, 31)
++/* glibc 2.30 and earlier provided 16-bit mode field instead of 32-bit
++   on many architectures.  */
+ CHECK_SIZE_AND_OFFSET(ipc_perm, mode);
+ #endif
+ 
+diff --git a/lib/sanitizer_common/sanitizer_platform_limits_posix.h b/lib/sanitizer_common/sanitizer_platform_limits_posix.h
+index f89a113..f6f986f 100644
+--- a/lib/sanitizer_common/sanitizer_platform_limits_posix.h
++++ b/lib/sanitizer_common/sanitizer_platform_limits_posix.h
+@@ -213,26 +213,13 @@ namespace __sanitizer {
+     u64 __unused1;
+     u64 __unused2;
+ #elif defined(__sparc__)
+-#if defined(__arch64__)
+     unsigned mode;
+-    unsigned short __pad1;
+-#else
+-    unsigned short __pad1;
+-    unsigned short mode;
+     unsigned short __pad2;
+-#endif
+     unsigned short __seq;
+     unsigned long long __unused1;
+     unsigned long long __unused2;
+-#elif defined(__mips__) || defined(__aarch64__) || defined(__s390x__)
+-    unsigned int mode;
+-    unsigned short __seq;
+-    unsigned short __pad1;
+-    unsigned long __unused1;
+-    unsigned long __unused2;
+ #else
+-    unsigned short mode;
+-    unsigned short __pad1;
++    unsigned int mode;
+     unsigned short __seq;
+     unsigned short __pad2;
+ #if defined(__x86_64__) && !defined(_LP64)

pkgs/development/compilers/llvm/7/compiler-rt.nix

@@ -46,6 +46,9 @@ stdenv.mkDerivation {
   outputs = [ "out" "dev" ];
 
   patches = [
+    # https://github.com/llvm/llvm-project/commit/947f9692440836dcb8d88b74b69dd379d85974ce
+    ./compiler-rt-glibc.patch
+
     ./compiler-rt-codesign.patch # Revert compiler-rt commit that makes codesign mandatory
   ] ++ stdenv.lib.optional (useLLVM) ./crtbegin-and-end.patch
     ++ stdenv.lib.optional stdenv.hostPlatform.isMusl ./sanitizers-nongnu.patch

pkgs/development/compilers/llvm/7/default.nix

@@ -1,4 +1,4 @@
-{ lowPrio, newScope, pkgs, stdenv, cmake, gcc, libstdcxxHook
+{ lowPrio, newScope, pkgs, stdenv, cmake
 , libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith, wrapBintoolsWith
 , buildLlvmTools # tools, but from the previous stage, for cross
 , targetLlvmLibraries # libraries, but from the next stage, for cross
@@ -58,25 +58,17 @@ let
 
     libstdcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
-      extraTools = [
+      libcxx = null; # libstdcxx is smuggled in with clang.gcc
-        libstdcxxHook
-      ];
       extraPackages = [
         targetLlvmLibraries.compiler-rt
       ];
-      extraBuildCommands = ''
+      extraBuildCommands = mkExtraBuildCommands cc;
-          echo "-target ${targetConfig}" >> $out/nix-support/cc-cflags
-          echo "-B${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-cflags
-          echo "-L${gcc.cc}/lib/gcc/${targetConfig}/${gcc.version}" >> $out/nix-support/cc-ldflags
-          echo "-L${gcc.cc.lib}/${targetConfig}/lib" >> $out/nix-support/cc-ldflags
-      '' + mkExtraBuildCommands cc;
     };
 
     libcxxClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
       libcxx = targetLlvmLibraries.libcxx;
       extraPackages = [
-        targetLlvmLibraries.libcxx
         targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];
@@ -87,48 +79,77 @@ let
 
     lldb = callPackage ./lldb.nix {};
 
+    # Below, is the LLVM bootstrapping logic. It handles building a
+    # fully LLVM toolchain from scratch. No GCC toolchain should be
+    # pulled in. As a consequence, it is very quick to build different
+    # targets provided by LLVM and we can also build for what GCC
+    # doesn’t support like LLVM. Probably we should move to some other
+    # file.
+
     bintools = callPackage ./bintools.nix {};
 
     lldClang = wrapCCWith rec {
       cc = tools.clang-unwrapped;
+      libcxx = targetLlvmLibraries.libcxx;
       bintools = wrapBintoolsWith {
         inherit (tools) bintools;
       };
       extraPackages = [
-        # targetLlvmLibraries.libcxx
+        targetLlvmLibraries.libcxxabi
-        # targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];
       extraBuildCommands = ''
-        echo "-target ${stdenv.targetPlatform.config} -rtlib=compiler-rt" >> $out/nix-support/cc-cflags
+        echo "-rtlib=compiler-rt -Wno-unused-command-line-argument" >> $out/nix-support/cc-cflags
+        echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags
+      '' + stdenv.lib.optionalString (!stdenv.targetPlatform.isWasm) ''
+        echo "--unwindlib=libunwind" >> $out/nix-support/cc-cflags
+      '' + stdenv.lib.optionalString stdenv.targetPlatform.isWasm ''
+        echo "-fno-exceptions" >> $out/nix-support/cc-cflags
+      '' + mkExtraBuildCommands cc;
+    };
+
+    lldClangNoLibcxx = wrapCCWith rec {
+      cc = tools.clang-unwrapped;
+      libcxx = null;
+      bintools = wrapBintoolsWith {
+        inherit (tools) bintools;
+      };
+      extraPackages = [
+        targetLlvmLibraries.compiler-rt
+      ];
+      extraBuildCommands = ''
+        echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags
+        echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags
+        echo "-nostdlib++" >> $out/nix-support/cc-cflags
       '' + mkExtraBuildCommands cc;
     };
 
     lldClangNoLibc = wrapCCWith rec {
       cc = tools.clang-unwrapped;
+      libcxx = null;
       bintools = wrapBintoolsWith {
         inherit (tools) bintools;
         libc = null;
       };
       extraPackages = [
-        # targetLlvmLibraries.libcxx
-        # targetLlvmLibraries.libcxxabi
         targetLlvmLibraries.compiler-rt
       ];
       extraBuildCommands = ''
-        echo "-target ${stdenv.targetPlatform.config} -rtlib=compiler-rt" >> $out/nix-support/cc-cflags
+        echo "-rtlib=compiler-rt" >> $out/nix-support/cc-cflags
+        echo "-B${targetLlvmLibraries.compiler-rt}/lib" >> $out/nix-support/cc-cflags
       '' + mkExtraBuildCommands cc;
     };
 
     lldClangNoCompilerRt = wrapCCWith {
       cc = tools.clang-unwrapped;
+      libcxx = null;
       bintools = wrapBintoolsWith {
         inherit (tools) bintools;
         libc = null;
       };
       extraPackages = [ ];
       extraBuildCommands = ''
-        echo "-nostartfiles -target ${stdenv.targetPlatform.config}" >> $out/nix-support/cc-cflags
+        echo "-nostartfiles" >> $out/nix-support/cc-cflags
       '';
     };
 
@@ -148,9 +169,16 @@ let
 
     libcxxStdenv = overrideCC stdenv buildLlvmTools.libcxxClang;
 
-    libcxx = callPackage ./libc++ {};
+    libcxx = callPackage ./libc++ ({} //
+      (stdenv.lib.optionalAttrs (stdenv.hostPlatform.useLLVM or false) {
+        stdenv = overrideCC stdenv buildLlvmTools.lldClangNoLibcxx;
+      }));
 
-    libcxxabi = callPackage ./libc++abi.nix {};
+    libcxxabi = callPackage ./libc++abi.nix ({} //
+      (stdenv.lib.optionalAttrs (stdenv.hostPlatform.useLLVM or false) {
+        stdenv = overrideCC stdenv buildLlvmTools.lldClangNoLibcxx;
+        libunwind = libraries.libunwind;
+      }));
 
     openmp = callPackage ./openmp.nix {};
   });

pkgs/development/compilers/llvm/7/libc++/default.nix

@@ -37,12 +37,9 @@ stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
-  linkCxxAbi = stdenv.isLinux;
+  passthru = {
-
+    isLLVM = true;
-  setupHooks = [
+  };
-    ../../../../../build-support/setup-hooks/role.bash
-    ./setup-hook.sh
-  ];
 
   meta = {
     homepage = "https://libcxx.llvm.org/";