Merge pull request #170756 from cpcloud/bump-ibis-framework

python3Packages.ibis-framework: 2.1.1 -> 3.0.2

pkgs/development/python-modules/duckdb-engine/default.nix

@@ -0,0 +1,40 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pytestCheckHook
+, pythonOlder
+, duckdb
+, hypothesis
+, ipython-sql
+, poetry-core
+, sqlalchemy
+}:
+buildPythonPackage rec {
+  pname = "duckdb-engine";
+  version = "0.1.8";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    repo = "duckdb_engine";
+    owner = "Mause";
+    rev = version;
+    hash = "sha256-dnm1nveCjrXFjDRykHp39AeVx7sk7Q/XwGn6hxdydT4=";
+  };
+
+  nativeBuildInputs = [ poetry-core ];
+
+  propagatedBuildInputs = [ duckdb sqlalchemy ];
+
+  checkInputs = [ pytestCheckHook hypothesis ipython-sql ];
+
+  pythonImportsCheck = [ "duckdb_engine" ];
+
+  meta = with lib; {
+    description = "Very very very basic sqlalchemy driver for duckdb";
+    homepage = "https://github.com/Mause/duckdb_engine";
+    license = licenses.mit;
+    maintainers = with maintainers; [ cpcloud ];
+  };
+}

pkgs/development/python-modules/ibis-framework/default.nix

@@ -8,6 +8,9 @@
 , clickhouse-driver
 , click
 , dask
+, datafusion
+, duckdb
+, duckdb-engine
 , graphviz
 , importlib-metadata
 , multipledispatch
@@ -15,50 +18,51 @@
 , pandas
 , parsy
 , poetry-core
+, poetry-dynamic-versioning
 , pyarrow
-, pytest
+, pydantic
+, pytest-benchmark
 , pytest-mock
 , pytest-xdist
+, python
 , pytz
 , regex
 , requests
 , sqlalchemy
-, tables
+, sqlite
+, tabulate
 , toolz
 }:
 let
   # ignore tests for which dependencies are not available
   backends = [
-    "csv"
     "dask"
-    "hdf5"
+    "datafusion"
+    "duckdb"
     "pandas"
-    "parquet"
     "sqlite"
   ];
 
-  backendsString = lib.concatStringsSep " " backends;
-
   ibisTestingData = fetchFromGitHub {
     owner = "ibis-project";
     repo = "testing-data";
-    rev = "743201a35c6b968cf55b054f9d28949ea15d1f0a";
+    rev = "a88a4b3c3b54a88e7f77e59de70f5bf20fb62f19";
-    sha256 = "sha256-xuSE6wHP3aF8lnEE2SuFbTRBu49ecRmc1F3HPcszptI=";
+    sha256 = "sha256-BnRhVwPcWFwiBJ2ySgiiuUdnF4gesnTq1/dLcuvc868=";
   };
 in
 
 buildPythonPackage rec {
   pname = "ibis-framework";
-  version = "2.1.1";
+  version = "3.0.2";
   format = "pyproject";
 
-  disabled = pythonOlder "3.7";
+  disabled = pythonOlder "3.8";
 
   src = fetchFromGitHub {
     repo = "ibis";
     owner = "ibis-project";
     rev = version;
-    hash = "sha256-n3fR6wvcSfIo7760seB+5SxtoYSqQmqkzZ9VlNQF200=";
+    hash = "sha256-7ywDMAHQAl39kiHfxVkq7voUEKqbb9Zq8qlaug7+ukI=";
   };
 
   nativeBuildInputs = [ poetry-core ];
@@ -68,65 +72,48 @@ buildPythonPackage rec {
     cached-property
     clickhouse-driver
     dask
+    datafusion
+    duckdb
+    duckdb-engine
     graphviz
+    importlib-metadata
     multipledispatch
     numpy
     pandas
     parsy
+    poetry-dynamic-versioning
     pyarrow
+    pydantic
     pytz
     regex
     requests
     sqlalchemy
-    tables
+    tabulate
     toolz
-  ] ++ lib.optionals (pythonOlder "3.8" && lib.versionOlder version "3.0.0") [
-    importlib-metadata
   ];
 
   checkInputs = [
     pytestCheckHook
     click
-    pytest
+    pytest-benchmark
     pytest-mock
     pytest-xdist
+    sqlite
   ];
 
-  postPatch = ''
-    substituteInPlace pyproject.toml \
-      --replace 'atpublic = ">=2.3,<3"' 'atpublic = ">=2.3"' \
-      --replace 'regex = "^2021.7.6"' 'regex = "*"'
-  '';
-
   preBuild = ''
     # setup.py exists only for developer convenience and is automatically generated
     rm setup.py
   '';
 
-  disabledTests = [
-    # These tests are broken upstream: https://github.com/ibis-project/ibis/issues/3291
-    "test_summary_numeric"
-    "test_summary_non_numeric"
-    "test_batting_most_hits"
-    "test_join_with_window_function"
-    "test_where_long"
-    "test_quantile_groupby"
-    "test_summary_numeric"
-    "test_summary_numeric_group_by"
-    "test_summary_non_numeric"
-    "test_searched_case_column"
-    "test_simple_case_column"
-    "test_summary_non_numeric_group_by"
-  ];
-
   pytestFlagsArray = [
-    "ibis/tests"
+    "--dist=loadgroup"
-    "ibis/backends/tests"
+    "-m"
-    "ibis/backends/{${lib.concatStringsSep "," backends}}/tests"
+    "'${lib.concatStringsSep " or " backends} or core'"
   ];
 
   preCheck = ''
-    set -euo pipefail
+    set -eo pipefail
 
     export IBIS_TEST_DATA_DIRECTORY
     IBIS_TEST_DATA_DIRECTORY="$(mktemp -d)"
@@ -138,13 +125,13 @@ buildPythonPackage rec {
     find "$IBIS_TEST_DATA_DIRECTORY" -type f -exec chmod u+rw {} +
 
     # load data
-    for backend in ${backendsString}; do
+    for backend in ${lib.concatStringsSep " " backends}; do
-      python ci/datamgr.py "$backend" &
+      ${python.interpreter} ci/datamgr.py load "$backend"
     done
+  '';
 
-    wait
+  postCheck = ''
-  '' + lib.optionalString (lib.versionOlder version "3.0.0") ''
+    rm -r "$IBIS_TEST_DATA_DIRECTORY"
-    export PYTEST_BACKENDS="${backendsString}"
   '';
 
   pythonImportsCheck = [

pkgs/development/python-modules/ipython-sql/default.nix

@@ -0,0 +1,58 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, ipython
+, ipython_genutils
+, pandas
+, prettytable
+, pytest
+, sqlalchemy
+, sqlparse
+}:
+buildPythonPackage rec {
+  pname = "ipython-sql";
+  version = "0.4.0";
+
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    owner = "catherinedevlin";
+    repo = "ipython-sql";
+    rev = "117764caf099d80100ed4b09fc004b55eed6f121";
+    hash = "sha256-ScQihsvRSnC7VIgy8Tzi1z4x6KIZo0SAeLPvHAVdrfA=";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.py --replace 'prettytable<1' prettytable
+  '';
+
+  propagatedBuildInputs = [
+    ipython
+    ipython_genutils
+    prettytable
+    sqlalchemy
+    sqlparse
+  ];
+
+  checkInputs = [ ipython pandas pytest ];
+
+  checkPhase = ''
+    runHook preCheck
+
+    # running with ipython is required because the tests use objects available
+    # only inside of ipython, for example the global `get_ipython()` function
+    ipython -c 'import pytest; pytest.main()'
+
+    runHook postCheck
+  '';
+
+  pythonImportsCheck = [ "sql" ];
+
+  meta = with lib; {
+    description = "Introduces a %sql (or %%sql) magic.";
+    homepage = "https://github.com/catherinedevlin/ipython-sql";
+    license = licenses.mit;
+    maintainers = with maintainers; [ cpcloud ];
+  };
+}

pkgs/development/python-modules/poetry-dynamic-versioning/default.nix

@@ -0,0 +1,52 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pytestCheckHook
+, pythonOlder
+, dunamai
+, jinja2
+, markupsafe
+, poetry-core
+, pytest
+, tomlkit
+}:
+buildPythonPackage rec {
+  pname = "poetry-dynamic-versioning";
+  version = "0.14.1";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    owner = "mtkennerly";
+    repo = pname;
+    rev = "v${version}";
+    hash = "sha256-J/93BFyp+XBy9TRAzAM64ZcMurHxcXDTukOGJE5yvBk=";
+  };
+
+  nativeBuildInputs = [ poetry-core ];
+
+  propagatedBuildInputs = [
+    dunamai
+    tomlkit
+    jinja2
+    markupsafe
+  ];
+
+  checkInputs = [ pytestCheckHook ];
+
+  disabledTests = [
+    # these require .git, but leaveDotGit = true doesn't help
+    "test__get_version__defaults"
+    "test__get_version__format_jinja"
+  ];
+
+  pythonImportsCheck = [ "poetry_dynamic_versioning" ];
+
+  meta = with lib; {
+    description = "Plugin for Poetry to enable dynamic versioning based on VCS tags";
+    homepage = "https://github.com/mtkennerly/poetry-dynamic-versioning";
+    license = licenses.mit;
+    maintainers = with maintainers; [ cpcloud ];
+  };
+}

pkgs/top-level/python-packages.nix

@@ -2530,6 +2530,8 @@ in {
     inherit (pkgs) duckdb;
   };
 
+  duckdb-engine = callPackage ../development/python-modules/duckdb-engine { };
+
   duecredit = callPackage ../development/python-modules/duecredit { };
 
   duet = callPackage ../development/python-modules/duet { };
@@ -4193,6 +4195,8 @@ in {
 
   ipython = callPackage ../development/python-modules/ipython { };
 
+  ipython-sql = callPackage ../development/python-modules/ipython-sql { };
+
   ipyvue = callPackage ../development/python-modules/ipyvue { };
 
   ipyvuetify = callPackage ../development/python-modules/ipyvuetify { };
@@ -6509,6 +6513,8 @@ in {
 
   poetry-core = callPackage ../development/python-modules/poetry-core { };
 
+  poetry-dynamic-versioning = callPackage ../development/python-modules/poetry-dynamic-versioning { };
+
   poetry-semver = callPackage ../development/python-modules/poetry-semver { };
 
   poetry2conda = callPackage ../development/python-modules/poetry2conda { };