Merge pull request #227207 from natsukium/kent/update

kent: 404 -> 446
This commit is contained in:
Nick Cao 2023-04-24 10:03:16 +08:00 committed by GitHub
commit ab7c128e3c
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@ -13,26 +13,32 @@
}:
stdenv.mkDerivation rec {
pname = "kent";
version = "404";
version = "446";
src = fetchFromGitHub {
owner = "ucscGenomeBrowser";
repo = pname;
rev = "v${version}_base";
sha256 = "0l5lmqqc6sqkf4hyk3z4825ly0vdlj5xdfad6zd0708cb1v81nbx";
hash = "sha256-d8gcoyMwINdHoD6xaNKt4rCKrKir99+i4KIzJ2YnxRw=";
};
buildInputs = [ libpng libuuid zlib bzip2 xz openssl curl libmysqlclient ];
patchPhase = ''
runHook prePatch
substituteInPlace ./src/checkUmask.sh \
--replace "/bin/bash" "${bash}/bin/bash"
substituteInPlace ./src/hg/sqlEnvTest.sh \
--replace "which mysql_config" "${which}/bin/which ${libmysqlclient}/bin/mysql_config"
runHook postPatch
'';
buildPhase = ''
runHook preBuild
export MACHTYPE=$(uname -m)
export CFLAGS="-fPIC"
export MYSQLINC=$(mysql_config --include | sed -e 's/^-I//g')
@ -56,18 +62,26 @@ stdenv.mkDerivation rec {
cd ../utils
make
runHook postBuild
'';
installPhase = ''
runHook preInstall
mkdir -p $out/bin
mkdir -p $out/lib
cp $NIX_BUILD_TOP/lib/jkOwnLib.a $out/lib
cp $NIX_BUILD_TOP/lib/jkweb.a $out/lib
cp $NIX_BUILD_TOP/bin/x86_64/* $out/bin
runHook postInstall
'';
meta = with lib; {
description = "UCSC Genome Bioinformatics Group's suite of biological analysis tools, i.e. the kent utilities";
homepage = "http://genome.ucsc.edu";
changelog = "https://github.com/ucscGenomeBrowser/kent/releases/tag/v${version}_base";
license = licenses.unfree;
maintainers = with maintainers; [ scalavision ];
platforms = platforms.linux;