r-modules: fix Hydra evaluation errors
This commit is contained in:
Peter Simons
parent
7021988dd1
commit
aaa9f837a9
@ -665,9 +665,9 @@ let
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"babel" # requires edgeR
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"BACA" # requires RDAVIDWebService
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"BcDiag" # requires fabia
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"beadarrayMSV" # requires Biobase, geneplotter, andlimma
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"bdvis" # requres taxize
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"beadarrayFilter" # requires beadarray
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"beadarrayMSV" # requires Biobase, geneplotter, andlimma
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"bigGP" # requires MPI running. HELP WANTED!
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"bigpca" # requires NCmisc
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"Biograph" # requires mvna
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@ -681,13 +681,13 @@ let
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"CARrampsOcl" # depends on OpenCL
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"CHAT" # requires DNAcopy
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"ChemoSpec" # depends on broken speaq
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"Crossover" # fails self-test
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"classGraph" # requires graph, and Rgraphviz
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"clpAPI" # requires clp
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"compendiumdb" # requires Biobase
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"CORM" # requires limma
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"cplexAPI" # requires CPLEX
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"crmn" # requires pcaMethods, and Biobase
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"Crossover" # fails self-test
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"CrypticIBDcheck" # requires rJPSGCS
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"cudaBayesreg" # requres Rmath
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"curvHDR" # requires flowCore
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@ -702,6 +702,7 @@ let
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"demi" # requires affy, affxparser, and oligo
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"DepthProc" # requires samr
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"DiagrammeR" # requires V8 to build
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"DiffCorr" # misses undeclared dependencies 'pcaMethods', 'multtest'
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"Digiroo2" # requires spatstat
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"dixon" # requires spatstat
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"dnet" # requires supraHex, graph, Rgraphviz, and Biobase
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@ -729,13 +730,14 @@ let
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"FunctionalNetworks" # requires breastCancerVDX, and Biobase
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"gamlss_demo" # requires rpanel
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"GeneticTools" # requires snpStats
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"geojsonio" # requires V8 to build
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"GExMap" # requires Biobase and multtest
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"gitter" # requires EBImage
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"glmgraph" # test suite says: "undefined symbol: dgemv_"
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"gmatrix" # depends on proprietary cudatoolkit
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"gMCP" # fails self-test
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"GOGANPA" # requires WGCNA
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"gputools" # depends on proprietary cudatoolkit
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"gMCP" # fails self-test
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"gRain" # requires gRbase
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"gRapHD" # requires graph
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"gRbase" # requires RBGL, and graph
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@ -752,6 +754,7 @@ let
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"HierO" # requires rneos
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"HiPLARM" # requires MAGMA or PLASMA
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"hpoPlot" # requires Rgraphviz
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"hsdar" # fails to build
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"HTSCluster" # requires edgeR
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"iFes" # depends on proprietary cudatoolkit
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"imputeLCMD" # requires pcaMethods, and impute
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@ -768,6 +771,7 @@ let
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"latticeDensity" # requires spatstat
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"leapp" # requires sva
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"lefse" # SDMTools.so: undefined symbol: X
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"lfe" # fails to compile
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"lgcp" # requires rpanel
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"LinRegInteractive" # requires Rpanel
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"LogisticDx" # requires gRbase
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@ -785,13 +789,16 @@ let
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"MigClim" # SDMTools.So: Undefined Symbol: X
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"minimist" # requires broken V8
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"miRtest" # requires globaltest, GlobalAncova, and limma
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"MixGHD" # requires mixture to build
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"mixture" # mixture.so: undefined symbol: dtrmm_
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"moduleColor" # requires impute
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"mongolite" # doesn't find OpenSSL
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"msarc" # requires AnnotationDbi
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"MSeasy" # requires mzR, and xcms
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"MSeasyTkGUI" # requires MSeasyTkGUI
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"MSIseq" # requires IRanges
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"msSurv" # requires graph
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"muir" # requires DiagrammeR to build
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"multiDimBio" # requires pcaMethods
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"mutossGUI" # requires mutoss
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"mutoss" # requires multtest
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@ -800,17 +807,14 @@ let
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"NCmisc" # requires BiocInstaller
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"netClass" # requires samr
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"nettools" # requires WGCNA
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"NORRRM" # can't load SDMTools properly
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"netweavers" # requires BiocGenerics, Biobase, and limma
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"NLPutils" # requires qdap
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"NORRRM" # can't load SDMTools properly
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"NSA" # requires aroma_core
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"OpenCL" # FIXME: requires CL/opencl.h
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"optBiomarker" # requires rpanel
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"ora" # requires ROracle
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"orQA" # requires genefilter
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"pRF" # requires multtest
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"PBSmapping" # fails its test suite for unclear reasons
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"PBSddesolve" # fails its test suite for unclear reasons
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"PairViz" # requires graph
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"PANDA" # requires GO.db
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"ParDNAcopy" # requires DNAcopy
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@ -820,6 +824,8 @@ let
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"pbdDEMO" # requires pbdMPI
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"pbdDMAT" # requires pbdMPI
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"pbdSLAP" # requires pbdMPI
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"PBSddesolve" # fails its test suite for unclear reasons
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"PBSmapping" # fails its test suite for unclear reasons
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"pcaL1" # requires clp
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"pcalg" # requires graph, and RBGL
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"PCGSE" # requires safe
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@ -836,6 +842,7 @@ let
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"pmclust" # requires MPI running. HELP WANTED!
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"polyCub" # requires spatstat
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"ppiPre" # requires AnnotationDbi, GOSemSim, GO.db
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"pRF" # requires multtest
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"propOverlap" # requires Biobase
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"protiq" # requires graph, and RBGL
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"PSCBS" # requires DNAcopy
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@ -845,17 +852,18 @@ let
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"qtlnet" # requires pcalg
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"qtpaint" # can't find QtCore libraries
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"QuACN" # requires graph, RBGL
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"quanteda" # fails to build
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"QuasiSeq" # requires edgeR
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"RADami" # requires Biostrings
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"raincpc" # SDMTools.so: undefined symbol: X
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"rainfreq" # SDMTools.so: undefined symbol: X
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"RAM" # requires Heatplus
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"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
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"RapidPolygonLookup" # depends on broken PBSmapping
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"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
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"RbioRXN" # requires fmcsR, and KEGGREST
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"RcppAPT" # configure script depends on /bin/sh
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"RcmdrPlugin_seeg" # requires seeg
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"Rcplex" # requires cplexAPI
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"RcppAPT" # configure script depends on /bin/sh
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"RcppRedis" # requires Hiredis
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"rDEA" # no such file or directory
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"RDieHarder" # requires libdieharder
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@ -863,6 +871,8 @@ let
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"REBayes" # requires Rmosek
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"RefFreeEWAS" # requires isva
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"retistruct" # depends on broken RImageJROI
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"rgp" # fails self-test
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"rgpui" # depends on broken rgp
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"RImageJROI" # requires spatstat
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"rjade" # requires V8 to build
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"rJPSGCS" # requires chopsticks
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@ -879,8 +889,6 @@ let
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"rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
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"RQuantLib" # requires QuantLib
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"RSAP" # requires SAPNWRFCSDK
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"rgp" # fails self-test
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"rgpui" # depends on broken rgp
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"RSeed" # requires RBGL, and graph
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"rsig" # requires survcomp
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"RSNPset" # requires qvalue
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@ -893,6 +901,7 @@ let
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"selectspm" # depends on broken ecespa
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"semiArtificial" # requires RSNNS
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"SeqFeatR" # requires Biostrings, qvalue, and widgetTools
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"SeqGrapheR" # depends on Biostrings
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"sequenza" # requires copynumber
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"SGCS" # requires spatstat
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"siar" # requires spatstat
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@ -913,9 +922,9 @@ let
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"speaq" # requires MassSpecWavelet
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"spocc" # requires leafletR
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"SQDA" # requires limma
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"Statomica" # requires Biobase, multtest
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"stagePop" # depends on broken PBSddesolve
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"SeqGrapheR" # depends on Biostrings
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"statar" # depends on broken lfe
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"Statomica" # requires Biobase, multtest
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"stpp" # requires spatstat
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"structSSI" # requires multtest
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"strum" # requires Rgraphviz
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@ -928,22 +937,16 @@ let
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"topologyGSA" # requires gRbase
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"TR8" # requres taxize
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"trip" # requires spatstat
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"TROM" # misses undeclared dependencies topGO', 'AnnotationDbi', 'GO.db'
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"ttScreening" # requires sva, and limma
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"V8" # compilation error
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"vows" # requires rpanel
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"vmsbase" # depends on broken PBSmapping
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"vows" # requires rpanel
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"WGCNA" # requires impute
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"wgsea" # requires snpStats
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"WideLM" # depends on proprietary cudatoolkit
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"x_ent" # requires opencpu
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"zoib" # tarball is invalid on server
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"DiffCorr" # misses undeclared dependencies 'pcaMethods', 'multtest'
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"TROM" # misses undeclared dependencies topGO', 'AnnotationDbi', 'GO.db'
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"lfe" # fails to compile
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"mongolite" # doesn't find OpenSSL
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"quanteda" # fails to build
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"statar" # depends on broken lfe
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"hsdar" # fails to build
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];
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otherOverrides = old: new: {
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