bpp-phyl: init at 2.4.1

pkgs/development/libraries/science/biology/bpp-phyl/default.nix

@@ -0,0 +1,32 @@
+{ stdenv, fetchFromGitHub, cmake, bpp-core, bpp-seq }:
+
+stdenv.mkDerivation rec {
+  pname = "bpp-phyl";
+
+  inherit (bpp-core) version;
+
+  src = fetchFromGitHub {
+    owner = "BioPP";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "192zks6wyk903n06c2lbsscdhkjnfwms8p7jblsmk3lvjhdipb20";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ bpp-core bpp-seq ];
+
+  preCheck = ''
+    export LD_LIBRARY_PATH=$(pwd)/src
+  '';
+
+  postFixup = ''
+    substituteInPlace $out/lib/cmake/${pname}/${pname}-targets.cmake  \
+      --replace 'set(_IMPORT_PREFIX' '#set(_IMPORT_PREFIX'
+  '';
+
+  doCheck = !stdenv.isDarwin;
+
+  meta = bpp-core.meta // {
+    changelog = "https://github.com/BioPP/bpp-phyl/blob/master/ChangeLog";
+  };
+}

pkgs/top-level/all-packages.nix

@@ -24392,6 +24392,8 @@ in
 
   bpp-core = callPackage ../development/libraries/science/biology/bpp-core { };
 
+  bpp-phyl = callPackage ../development/libraries/science/biology/bpp-phyl { };
+
   bpp-seq = callPackage ../development/libraries/science/biology/bpp-seq { };
 
   cd-hit = callPackage ../applications/science/biology/cd-hit { };