diff --git a/pkgs/development/python-modules/aenum/default.nix b/pkgs/development/python-modules/aenum/default.nix index 466c20e19ca5..facf86c58988 100644 --- a/pkgs/development/python-modules/aenum/default.nix +++ b/pkgs/development/python-modules/aenum/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "aenum"; - version = "2.0.9"; + version = "2.1.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "d98bc55136d696fcf323760c3db0de489da9e41fd51283fa6f90205deb85bf6a"; + sha256 = "9eb1c8f48ae13c56d22a7227db0e4b1717131b284c6c0db6e4ccca6f5894df95"; }; # For Python 3, locale has to be set to en_US.UTF-8 for diff --git a/pkgs/development/python-modules/alembic/default.nix b/pkgs/development/python-modules/alembic/default.nix index 54e1a753597c..176805e57e5c 100644 --- a/pkgs/development/python-modules/alembic/default.nix +++ b/pkgs/development/python-modules/alembic/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "alembic"; - version = "0.9.7"; + version = "0.9.8"; src = fetchPypi { inherit pname version; - sha256 = "46f4849c6dce69f54dd5001b3215b6a983dee6b17512efee10e237fa11f20cfa"; + sha256 = "13b8611788acf0d7b617775db5c2ae26554a6d4263c590ef628d448fd05aef56"; }; buildInputs = [ pytest pytestcov mock coverage ]; diff --git a/pkgs/development/python-modules/argcomplete/default.nix b/pkgs/development/python-modules/argcomplete/default.nix index 37164cb42760..b13470b4c45b 100644 --- a/pkgs/development/python-modules/argcomplete/default.nix +++ b/pkgs/development/python-modules/argcomplete/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "argcomplete"; - version = "1.9.3"; + version = "1.9.4"; src = fetchPypi { inherit pname version; - sha256 = "d97b7f3cfaa4e494ad59ed6d04c938fc5ed69b590bd8f53274e258fb1119bd1b"; + sha256 = "06c8a54ffaa6bfc9006314498742ec8843601206a3b94212f82657673662ecf1"; }; doCheck = false; # bash-completion test fails with "compgen: command not found". diff --git a/pkgs/development/python-modules/asana/default.nix b/pkgs/development/python-modules/asana/default.nix index 7990ece749b5..91664f76ad10 100644 --- a/pkgs/development/python-modules/asana/default.nix +++ b/pkgs/development/python-modules/asana/default.nix @@ -4,7 +4,7 @@ buildPythonPackage rec { pname = "asana"; - version = "0.6.7"; + version = "0.7.0"; name = "${pname}-${version}"; meta = { @@ -15,7 +15,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "d576601116764050c4cf63b417f1c24700b76cf6686f0e51e6b0b77d450e7973"; + sha256 = "a7ff4a78529257a5412e78cafd6b3025523364c0ab628d579f2771dd66b254bc"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/asgiref/default.nix b/pkgs/development/python-modules/asgiref/default.nix index a2815fc0c86f..223f53698e95 100644 --- a/pkgs/development/python-modules/asgiref/default.nix +++ b/pkgs/development/python-modules/asgiref/default.nix @@ -1,12 +1,12 @@ { stdenv, buildPythonPackage, fetchurl, six }: buildPythonPackage rec { - version = "2.1.1"; + version = "2.1.5"; pname = "asgiref"; name = "${pname}-${version}"; src = fetchurl { url = "mirror://pypi/a/asgiref/${name}.tar.gz"; - sha256 = "112828022d772925b47b22caf8108dadd3b26bb0af719eb01b2c3a807795429d"; + sha256 = "1a46196df28c67e046a54cc537ce5a8f6a59eb68649f54680d7e4fc3b113ab1b"; }; propagatedBuildInputs = [ six ]; diff --git a/pkgs/development/python-modules/astropy/default.nix b/pkgs/development/python-modules/astropy/default.nix index 514762b7a37d..ccf988fc56db 100644 --- a/pkgs/development/python-modules/astropy/default.nix +++ b/pkgs/development/python-modules/astropy/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "astropy"; - version = "2.0.3"; + version = "3.0"; name = "${pname}-${version}"; doCheck = false; #Some tests are failing. More importantly setup.py hangs on completion. Needs fixing with a proper shellhook. src = fetchPypi { inherit pname version; - sha256 = "fdfc0248f6250798ed6d1327be609cb901db89ae01fc768cfbc9e263bdf56f4f"; + sha256 = "9e0ad19b9d6d227bdf0932bbe64a8c5dd4a47d4ec078586cf24bf9f0c61d9ecf"; }; propagatedBuildInputs = [ pytest numpy ]; # yes it really has pytest in install_requires diff --git a/pkgs/development/python-modules/backports_functools_lru_cache/default.nix b/pkgs/development/python-modules/backports_functools_lru_cache/default.nix index 0def8a2de2a0..bcaa844720bd 100644 --- a/pkgs/development/python-modules/backports_functools_lru_cache/default.nix +++ b/pkgs/development/python-modules/backports_functools_lru_cache/default.nix @@ -7,11 +7,11 @@ if !(pythonOlder "3.3") then null else buildPythonPackage rec { pname = "backports.functools_lru_cache"; - version = "1.4"; + version = "1.5"; src = fetchPypi { inherit pname version; - sha256 = "31f235852f88edc1558d428d890663c49eb4514ffec9f3650e7f3c9e4a12e36f"; + sha256 = "9d98697f088eb1b0fa451391f91afb5e3ebde16bbdb272819fd091151fda4f1a"; }; buildInputs = [ setuptools_scm ]; diff --git a/pkgs/development/python-modules/bibtexparser/default.nix b/pkgs/development/python-modules/bibtexparser/default.nix index 74b1062cea44..50e389a9e14b 100644 --- a/pkgs/development/python-modules/bibtexparser/default.nix +++ b/pkgs/development/python-modules/bibtexparser/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "bibtexparser"; - version = "0.6.2"; + version = "1.0.1"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "5888219ac5db1c63ae0ad4db52ec7ad87fe7a32bd60e62ee87bceedb8ebf73b8"; + sha256 = "cc41cdd8332c2bf44b97daf1f135f4f267c3b744c33976655cd270b66f964c0a"; }; # No tests in archive diff --git a/pkgs/development/python-modules/bokeh/default.nix b/pkgs/development/python-modules/bokeh/default.nix index e3c77fa65cf4..66a5a542bf1e 100644 --- a/pkgs/development/python-modules/bokeh/default.nix +++ b/pkgs/development/python-modules/bokeh/default.nix @@ -34,11 +34,11 @@ buildPythonPackage rec { pname = "bokeh"; name = "${pname}${version}"; - version = "0.12.13"; + version = "0.12.14"; src = fetchPypi { inherit pname version; - sha256 = "6e28cbfd88de0c459435278b75f9982591ec0aaa3d37a195052645e1c62e89e3"; + sha256 = "42abada2e484d2d5b290d14a943e1c3cd7adabd39933b5f074f57b6cf7920a87"; }; disabled = isPyPy; diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix index 897e9c884072..e363136615ea 100644 --- a/pkgs/development/python-modules/botocore/default.nix +++ b/pkgs/development/python-modules/botocore/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "botocore"; - version = "1.8.36"; + version = "1.8.45"; src = fetchPypi { inherit pname version; - sha256 = "b2c9e0fd6d14910f759a33c19f8315dddedbb3c5569472b7be7ceed4f001a675"; + sha256 = "8f91b648a216dc945783d1539c013fc08a9e65ecc4fc5aae017bdd5961fd3468"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bpython/default.nix b/pkgs/development/python-modules/bpython/default.nix index f9ab331a3f64..ad80e5647a48 100644 --- a/pkgs/development/python-modules/bpython/default.nix +++ b/pkgs/development/python-modules/bpython/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "bpython"; - version = "0.17"; + version = "0.17.1"; src = fetchPypi { inherit pname version; - sha256 = "1mbah208jhd7bsfaa17fwpi55f7fvif0ghjwgrjmpmx8w1vqab9l"; + sha256 = "8907c510bca3c4d9bc0a157279bdc5e3b739cc68c0f247167279b6fe4becb02f"; }; propagatedBuildInputs = [ curtsies greenlet pygments requests urwid ]; diff --git a/pkgs/development/python-modules/channels/default.nix b/pkgs/development/python-modules/channels/default.nix index 36191b95479b..46692999a498 100644 --- a/pkgs/development/python-modules/channels/default.nix +++ b/pkgs/development/python-modules/channels/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "channels"; name = "${pname}-${version}"; - version = "2.0.0"; + version = "2.0.2"; src = fetchPypi { inherit pname version; - sha256 = "c365492b90bd936c763e06cd76bda96cd3e70e5a5d2a196c25754e0c1d8da85a"; + sha256 = "5d41e0f2aa40f9755f36c2c1dd83748b6793732190d577922e06294a3b37fd92"; }; # Files are missing in the distribution diff --git a/pkgs/development/python-modules/cherrypy/default.nix b/pkgs/development/python-modules/cherrypy/default.nix index 5711cdba2b5b..5167cc443194 100644 --- a/pkgs/development/python-modules/cherrypy/default.nix +++ b/pkgs/development/python-modules/cherrypy/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "CherryPy"; - version = "13.1.0"; + version = "14.0.0"; src = fetchPypi { inherit pname version; - sha256 = "0pb9mfmhns33jq4nrd38mv88ha74fj3q0y2mm8qsjh7ywphvk9ap"; + sha256 = "5f5ee020d6547a8d452b3560775ca2374ffe2ff8c0aec1b272e93b6af80d850e"; }; propagatedBuildInputs = [ cheroot portend routes six ]; diff --git a/pkgs/development/python-modules/configargparse/default.nix b/pkgs/development/python-modules/configargparse/default.nix index 9540b0599315..6a52076252e8 100644 --- a/pkgs/development/python-modules/configargparse/default.nix +++ b/pkgs/development/python-modules/configargparse/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "ConfigArgParse"; - version = "0.12.0"; + version = "0.13.0"; src = fetchPypi { inherit pname version; - sha256 = "0fgkiqh6r3rbkdq3k8c48m85g52k96686rw3a6jg4lcncrkpvk98"; + sha256 = "e6441aa58e23d3d122055808e5e2220fd742dff6e1e51082d2a4e4ed145dd788"; }; # no tests in tarball diff --git a/pkgs/development/python-modules/coverage/default.nix b/pkgs/development/python-modules/coverage/default.nix index 1c58ecb9aa61..8b85a0d94c5a 100644 --- a/pkgs/development/python-modules/coverage/default.nix +++ b/pkgs/development/python-modules/coverage/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "coverage"; - version = "4.4.2"; + version = "4.5.1"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "309d91bd7a35063ec7a0e4d75645488bfab3f0b66373e7722f23da7f5b0f34cc"; + sha256 = "56e448f051a201c5ebbaa86a5efd0ca90d327204d8b059ab25ad0f35fbfd79f1"; }; # No tests in archive diff --git a/pkgs/development/python-modules/curtsies/default.nix b/pkgs/development/python-modules/curtsies/default.nix index d9505b384af8..8d6052c5299f 100644 --- a/pkgs/development/python-modules/curtsies/default.nix +++ b/pkgs/development/python-modules/curtsies/default.nix @@ -2,10 +2,10 @@ buildPythonPackage rec { pname = "curtsies"; - version = "0.2.11"; + version = "0.3.0"; src = fetchPypi { inherit pname version; - sha256 = "1vljmw3sy6lrqahhpyg4gk13mzcx3mwhvg8s41698ms3cpgkjipc"; + sha256 = "89c802ec051d01dec6fc983e9856a3706e4ea8265d2940b1f6d504a9e26ed3a9"; }; propagatedBuildInputs = [ blessings wcwidth pyte ]; diff --git a/pkgs/development/python-modules/daphne/default.nix b/pkgs/development/python-modules/daphne/default.nix index 6fec8bf882c7..86b00ca74085 100644 --- a/pkgs/development/python-modules/daphne/default.nix +++ b/pkgs/development/python-modules/daphne/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "daphne"; name = "${pname}-${version}"; - version = "2.0.0"; + version = "2.0.3"; src = fetchPypi { inherit pname version; - sha256 = "ecd43a2dd889fb74e16bf8b7f67c076c4ec1b36229ce782272e46c50d56174dd"; + sha256 = "bb2075ce35ca00f2e5440cc034dfebd5c00d346de62ea45f099db089b868c31f"; }; buildInputs = [ hypothesis ]; diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix index 79e423d4847b..8a8437767d80 100644 --- a/pkgs/development/python-modules/dask/default.nix +++ b/pkgs/development/python-modules/dask/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "dask"; - version = "0.16.1"; + version = "0.17.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "07a0609ce053c8c2675037e6d5242899f90ecfb5262e1d0b2d7264fe8814099c"; + sha256 = "4d2b0754d16ddc3f87026c1fc4fa3b589d7604a41d3f6510268f172abc1d0a5e"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/django-polymorphic/default.nix b/pkgs/development/python-modules/django-polymorphic/default.nix index 1e3d60b765cd..8cb68ed1e7dc 100644 --- a/pkgs/development/python-modules/django-polymorphic/default.nix +++ b/pkgs/development/python-modules/django-polymorphic/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "django-polymorphic"; - version = "2.0"; + version = "2.0.2"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "78f666149ea10cdda08ac6c25ddf4b4e582ee380be87e7968bfed008ef39dfa5"; + sha256 = "e1821d7b5874509a158a0f22bebf544330e0944c481c5a3e6da6cac8887e4e88"; }; checkInputs = [ django ]; diff --git a/pkgs/development/python-modules/docker_compose/default.nix b/pkgs/development/python-modules/docker_compose/default.nix index e6be57c8b52d..711babe9518e 100644 --- a/pkgs/development/python-modules/docker_compose/default.nix +++ b/pkgs/development/python-modules/docker_compose/default.nix @@ -6,12 +6,12 @@ , enum34, functools32, }: buildPythonApplication rec { - version = "1.18.0"; + version = "1.19.0"; pname = "docker-compose"; src = fetchPypi { inherit pname version; - sha256 = "2930cbfe2685018fbb75377600ab6288861d9955717b3f14212f63950351d379"; + sha256 = "f227e0e4b7d88aaf8f892b03a2068942c56ea16bcf2a0fb9fe2a3a071c5fef0b"; }; # lots of networking and other fails diff --git a/pkgs/development/python-modules/eve/default.nix b/pkgs/development/python-modules/eve/default.nix index fe6daf73339f..664322362b25 100644 --- a/pkgs/development/python-modules/eve/default.nix +++ b/pkgs/development/python-modules/eve/default.nix @@ -3,12 +3,12 @@ buildPythonPackage rec { pname = "Eve"; - version = "0.7.6"; + version = "0.7.8"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "1ba84ab471bc2203a728fe4707a9279c44420224180b418601778125f51577ff"; + sha256 = "af373ab7b9611990d39b090eed372a0860d4e12a1c8a6ef49fdee29e4626053f"; }; patches = [ diff --git a/pkgs/development/python-modules/fiona/default.nix b/pkgs/development/python-modules/fiona/default.nix index 1fc7ae5aa582..bd249dea5d24 100644 --- a/pkgs/development/python-modules/fiona/default.nix +++ b/pkgs/development/python-modules/fiona/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "Fiona"; - version = "1.7.11"; + version = "1.7.11.post1"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "5e9c68ea71e9d79fcfb68c9a101c0b133301e233c9bcca7b7c65f33cc7636ef5"; + sha256 = "35df044fa805e6b420450f5d4281fc0edf96e1da0545c31032045cd3cfad3abf"; }; buildInputs = [ diff --git a/pkgs/development/python-modules/flake8-debugger/default.nix b/pkgs/development/python-modules/flake8-debugger/default.nix index aab914330880..9d69c0389b69 100644 --- a/pkgs/development/python-modules/flake8-debugger/default.nix +++ b/pkgs/development/python-modules/flake8-debugger/default.nix @@ -3,10 +3,10 @@ buildPythonPackage rec { pname = "flake8-debugger"; name = "${pname}-${version}"; - version = "3.0.0"; + version = "3.1.0"; src = fetchurl { url = "mirror://pypi/f/flake8-debugger/${name}.tar.gz"; - sha256 = "e5c8ac980d819db2f3fbb89fe0e43a2fe6c127edd6ce4984a3f7e0bbdac3d2d4"; + sha256 = "be4fb88de3ee8f6dd5053a2d347e2c0a2b54bab6733a2280bb20ebd3c4ca1d97"; }; buildInputs = [ nose ]; propagatedBuildInputs = [ flake8 ]; diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix index 80fc3893f17c..a8a89f0e8ca7 100644 --- a/pkgs/development/python-modules/fonttools/default.nix +++ b/pkgs/development/python-modules/fonttools/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "fonttools"; - version = "3.21.2"; + version = "3.22.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "96b636793c806206b1925e21224f4ab2ce5bea8ae0990ed181b8ac8d30848f47"; + sha256 = "01640dfbc0ba752181b21fe74240b8a7bbf7af75581737245836ada5565bd549"; extension = "zip"; }; diff --git a/pkgs/development/python-modules/globus-sdk/default.nix b/pkgs/development/python-modules/globus-sdk/default.nix index 4f36a5c1b771..789cfaaea7aa 100644 --- a/pkgs/development/python-modules/globus-sdk/default.nix +++ b/pkgs/development/python-modules/globus-sdk/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "globus-sdk"; - version = "1.4.1"; + version = "1.5.0"; src = fetchPypi { inherit pname version; - sha256 = "1nwdhhn9ib5ln56q8h3g42dl93jl67xlxkgl1wqkh7pacg00r4vs"; + sha256 = "f3ee8294c11f0d1a4430ae7534236c6a6837312f1b4056adbb183a3af663d2be"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/google_auth/default.nix b/pkgs/development/python-modules/google_auth/default.nix index 2076f3c34441..ef101077eaab 100644 --- a/pkgs/development/python-modules/google_auth/default.nix +++ b/pkgs/development/python-modules/google_auth/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "google-auth"; - version = "1.3.0"; + version = "1.4.1"; src = fetchPypi { inherit pname version; - sha256 = "d119b5954393d81c4a986ab420cf2c8129fc95ff5c4c6bb8ab5c8f3e6446394f"; + sha256 = "9051802d3dae256036cca9e34633a32c0ed1427730d4ebc513dff91ec8b6dd45"; }; checkInputs = [ pytest mock oauth2client flask requests urllib3 pytest-localserver ]; diff --git a/pkgs/development/python-modules/google_cloud_speech/default.nix b/pkgs/development/python-modules/google_cloud_speech/default.nix index a388c0fa70cb..c24e0d88067b 100644 --- a/pkgs/development/python-modules/google_cloud_speech/default.nix +++ b/pkgs/development/python-modules/google_cloud_speech/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "google-cloud-speech"; - version = "0.31.0"; + version = "0.32.0"; src = fetchPypi { inherit pname version; - sha256 = "b0f6a542165750e42b1c92e6c465e8dc35c38d138ae7f08174971ab9b0df2a71"; + sha256 = "2513725e693c3a2fdf22cb3065f3fcb39de2ab962a0cbc5de11a3889834189e1"; }; propagatedBuildInputs = [ setuptools google_api_core google_gax google_cloud_core ]; diff --git a/pkgs/development/python-modules/grpcio/default.nix b/pkgs/development/python-modules/grpcio/default.nix index ea59bedc0359..d1f0903238c7 100644 --- a/pkgs/development/python-modules/grpcio/default.nix +++ b/pkgs/development/python-modules/grpcio/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "grpcio"; - version = "1.9.0"; + version = "1.9.1"; src = fetchPypi { inherit pname version; - sha256 = "b61d3a7c45aa08f15dfa735a6a8282b5097be91ff36ad347594d3945ffc12181"; + sha256 = "e7c43b5619deff48cc177c1b0618c4beeb2797f910f160e3c2035d5baf790a5d"; }; propagatedBuildInputs = [ six protobuf ] diff --git a/pkgs/development/python-modules/gssapi/default.nix b/pkgs/development/python-modules/gssapi/default.nix index b075db5ae987..bab965b5a9c1 100644 --- a/pkgs/development/python-modules/gssapi/default.nix +++ b/pkgs/development/python-modules/gssapi/default.nix @@ -3,12 +3,12 @@ nose, shouldbe, gss, krb5Full, which, darwin }: buildPythonPackage rec { pname = "gssapi"; - version = "1.3.0"; + version = "1.4.1"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "765205082a9490c8e8be88ac16a6249d124396a671665edeec9927a7f244d712"; + sha256 = "be8f37dd9da726db375b9c693e0a63b391d381d903516e79ecc2a2cc965580e4"; }; # It's used to locate headers diff --git a/pkgs/development/python-modules/h5py/default.nix b/pkgs/development/python-modules/h5py/default.nix index bdbdcdcc2e74..54cfb5dc93ba 100644 --- a/pkgs/development/python-modules/h5py/default.nix +++ b/pkgs/development/python-modules/h5py/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, python, buildPythonPackage +{ stdenv, fetchPypi, fetchpatch, python, buildPythonPackage , numpy, hdf5, cython, six, pkgconfig , mpi4py ? null, openssh }: @@ -9,14 +9,12 @@ with stdenv.lib; let mpi = hdf5.mpi; mpiSupport = hdf5.mpiSupport; - in buildPythonPackage rec { version = "2.7.1"; pname = "h5py"; - name = "${pname}-${version}"; - src = fetchurl { - url = "mirror://pypi/h/h5py/${name}.tar.gz"; + src = fetchPypi { + inherit pname version; sha256 = "180a688311e826ff6ae6d3bda9b5c292b90b28787525ddfcb10a29d5ddcae2cc"; }; @@ -34,11 +32,15 @@ in buildPythonPackage rec { nativeBuildInputs = [ pkgconfig ]; buildInputs = [ hdf5 cython ] - ++ optional mpiSupport mpi - ; + ++ optional mpiSupport mpi; propagatedBuildInputs = [ numpy six] - ++ optionals mpiSupport [ mpi4py openssh ] - ; + ++ optionals mpiSupport [ mpi4py openssh ]; + + patches = [ + # Patch is based on upstream patch. The tox.ini hunk had to be removed. + # https://github.com/h5py/h5py/commit/5009e062a6f7d4e074cab0fcb42a780ac2b1d7d4.patch + ./numpy-1.14.patch + ]; meta = { description = diff --git a/pkgs/development/python-modules/h5py/numpy-1.14.patch b/pkgs/development/python-modules/h5py/numpy-1.14.patch new file mode 100644 index 000000000000..e1db7e05808d --- /dev/null +++ b/pkgs/development/python-modules/h5py/numpy-1.14.patch @@ -0,0 +1,94 @@ +From 5009e062a6f7d4e074cab0fcb42a780ac2b1d7d4 Mon Sep 17 00:00:00 2001 +From: James Tocknell +Date: Thu, 28 Dec 2017 20:55:55 +1100 +Subject: [PATCH] FIX: Don't reorder compound types, breaks on numpy 1.14 + +--- + h5py/h5t.pyx | 25 +++++++------------------ + setup.py | 2 +- + tox.ini | 4 ++-- + 3 files changed, 10 insertions(+), 21 deletions(-) + +diff --git a/h5py/h5t.pyx b/h5py/h5t.pyx +index cc2344e1..7445e9eb 100644 +--- a/h5py/h5t.pyx ++++ b/h5py/h5t.pyx +@@ -1136,12 +1136,6 @@ cdef class TypeCompoundID(TypeCompositeID): + else: + if sys.version[0] == '3': + field_names = [x.decode('utf8') for x in field_names] +- if len(field_names) > 0: +- collated_fields = zip(field_names, field_types, field_offsets) +- ordered_fields = sorted( +- collated_fields, key=operator.itemgetter(2)) +- field_names, field_types, field_offsets = \ +- map(list, zip(*ordered_fields)) + typeobj = dtype({ + 'names': field_names, + 'formats': field_types, +@@ -1458,8 +1452,7 @@ cdef TypeCompoundID _c_compound(dtype dt, int logical, int aligned): + cdef dtype member_dt + cdef size_t member_offset = 0 + +- cdef dict offsets = {} +- cdef list fields = [] ++ cdef dict fields = {} + + # The challenge with correctly converting a numpy/h5py dtype to a HDF5 type + # which is composed of subtypes has three aspects we must consider +@@ -1468,19 +1461,14 @@ cdef TypeCompoundID _c_compound(dtype dt, int logical, int aligned): + # 2. For correct round-tripping of aligned dtypes, we need to consider how + # much padding we need by looking at the field offsets + # 3. There is no requirement that the offsets be monotonically increasing +- # (so we start by sorting the names as a function of increasing offset) + # + # The code below tries to cover these aspects + +- # Get offsets for each compound member +- for name, field in dt.fields.items(): +- offsets[name] = field[1] +- + # Build list of names, offsets, and types, sorted by increasing offset + # (i.e. the position of the member in the struct) +- for name in sorted(dt.names, key=offsets.__getitem__): ++ for name in sorted(dt.names, key=(lambda n: dt.fields[n][1])): + field = dt.fields[name] +- name = name.encode('utf8') if isinstance(name, unicode) else name ++ h5_name = name.encode('utf8') if isinstance(name, unicode) else name + + # Get HDF5 data types and set the offset for each member + member_dt = field[0] +@@ -1489,7 +1477,7 @@ cdef TypeCompoundID _c_compound(dtype dt, int logical, int aligned): + if aligned and (member_offset > field[1] + or member_dt.itemsize != member_type.get_size()): + raise TypeError("Enforced alignment not compatible with HDF5 type") +- fields.append((name, member_offset, member_type)) ++ fields[name] = (h5_name, member_offset, member_type) + + # Update member offset based on the HDF5 type size + member_offset += member_type.get_size() +@@ -1500,8 +1488,9 @@ cdef TypeCompoundID _c_compound(dtype dt, int logical, int aligned): + + # Create compound with the necessary size, and insert its members + tid = H5Tcreate(H5T_COMPOUND, member_offset) +- for (name, member_offset, member_type) in fields: +- H5Tinsert(tid, name, member_offset, member_type.id) ++ for name in dt.names: ++ h5_name, member_offset, member_type = fields[name] ++ H5Tinsert(tid, h5_name, member_offset, member_type.id) + + return TypeCompoundID(tid) + +diff --git a/setup.py b/setup.py +index ec2a78a7..bbb086f6 100755 +--- a/setup.py ++++ b/setup.py +@@ -32,7 +32,7 @@ + # these are required to build h5py + # RUN_REQUIRES is included as setup.py test needs RUN_REQUIRES for testing + # RUN_REQUIRES can be removed when setup.py test is removed +-SETUP_REQUIRES = RUN_REQUIRES + [NUMPY_DEP, 'Cython>=0.19', 'pkgconfig'] ++SETUP_REQUIRES = RUN_REQUIRES + [NUMPY_DEP, 'Cython>=0.23', 'pkgconfig'] + + # Needed to avoid trying to install numpy/cython on pythons which the latest + # versions don't support diff --git a/pkgs/development/python-modules/hypothesis/default.nix b/pkgs/development/python-modules/hypothesis/default.nix index 91939d146887..d5ee59ac2d92 100644 --- a/pkgs/development/python-modules/hypothesis/default.nix +++ b/pkgs/development/python-modules/hypothesis/default.nix @@ -1,5 +1,5 @@ -{ stdenv, buildPythonPackage, fetchFromGitHub, python -, pythonOlder, pythonAtLeast, enum34 +{ lib, buildPythonPackage, fetchFromGitHub, python +, isPy3k, attrs, coverage, enum34 , doCheck ? true, pytest, pytest_xdist, flake8, flaky, mock }: buildPythonPackage rec { @@ -9,20 +9,19 @@ buildPythonPackage rec { # pytz fake_factory django numpy pytest # If you need these, you can just add them to your environment. - version = "3.27.0"; + version = "3.45.2"; pname = "hypothesis"; - name = "${pname}-${version}"; # Upstream prefers github tarballs src = fetchFromGitHub { owner = "HypothesisWorks"; repo = "hypothesis-python"; - rev = "${version}"; - sha256 = "1lvhd8jrwajyc5w1alb9vinsi97fjfqpkxkh8g8j527831lig0j0"; - }; + rev = version; + sha256 = "063sn5m1966gvm3wrlxczdq4vw0r94h3nd9xpr94qxahpg2r4bpb"; + }; - checkInputs = stdenv.lib.optionals doCheck [ pytest pytest_xdist flake8 flaky mock]; - propagatedBuildInputs = stdenv.lib.optionals (pythonOlder "3.4") [ enum34 ]; + checkInputs = [ pytest pytest_xdist flaky mock ]; + propagatedBuildInputs = [ attrs coverage ] ++ lib.optional (!isPy3k) [ enum34 ]; inherit doCheck; @@ -32,11 +31,7 @@ buildPythonPackage rec { py.test tests/cover ''; - # Unsupport by upstream on certain versions - # https://github.com/HypothesisWorks/hypothesis-python/issues/477 - disabled = pythonOlder "3.4" && pythonAtLeast "2.8"; - - meta = with stdenv.lib; { + meta = with lib; { description = "A Python library for property based testing"; homepage = https://github.com/HypothesisWorks/hypothesis; license = licenses.mpl20; diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix index 330141fcd06e..018a522a591a 100644 --- a/pkgs/development/python-modules/ipykernel/default.nix +++ b/pkgs/development/python-modules/ipykernel/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "ipykernel"; - version = "4.8.0"; + version = "4.8.1"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "dedc199df6a38725c732986dfa606c245fb8fe0fe999b33a0c305b73d80c6774"; + sha256 = "fe2837622a4121cbe42b354db1e2ab46c91e807ffcb92f4c2cfd323a75f8737f"; }; buildInputs = [ nose ] ++ lib.optional isPy27 mock; diff --git a/pkgs/development/python-modules/ipyparallel/default.nix b/pkgs/development/python-modules/ipyparallel/default.nix index 3e8ea0489207..e4765a29e835 100644 --- a/pkgs/development/python-modules/ipyparallel/default.nix +++ b/pkgs/development/python-modules/ipyparallel/default.nix @@ -16,12 +16,12 @@ buildPythonPackage rec { pname = "ipyparallel"; - version = "6.0.2"; + version = "6.1.1"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "7eea4780266252fcc987b220a302d589fbb4d6b0569bd131115a20b31891103d"; + sha256 = "f1e03ebb8d17f67f03bafa5d85f220883462f7bd7a97fe904c7d56ffba8534a3"; }; buildInputs = [ nose ]; diff --git a/pkgs/development/python-modules/ipywidgets/default.nix b/pkgs/development/python-modules/ipywidgets/default.nix index b41f70c073c0..c504062cba61 100644 --- a/pkgs/development/python-modules/ipywidgets/default.nix +++ b/pkgs/development/python-modules/ipywidgets/default.nix @@ -14,12 +14,12 @@ buildPythonPackage rec { pname = "ipywidgets"; - version = "7.1.1"; + version = "7.1.2"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "69e8c444e99601e6f9b9e9e596c87c19665fc73c2dd05cd507c94f35fba2959d"; + sha256 = "4263ce721a1e5b53a84c4595a5e296d270ae0dc534401b536f4dda64e0b0ca02"; }; # Tests are not distributed diff --git a/pkgs/development/python-modules/jsonpickle/default.nix b/pkgs/development/python-modules/jsonpickle/default.nix index 2d9f02a5affb..3a0f72377302 100644 --- a/pkgs/development/python-modules/jsonpickle/default.nix +++ b/pkgs/development/python-modules/jsonpickle/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "jsonpickle"; - version = "0.9.5"; + version = "0.9.6"; src = fetchPypi { inherit pname version; - sha256 = "cc25dc79571d4ad7db59d05ddb7de0d76a8d598cf6136e1dbeaa9361ebcfe749"; + sha256 = "545b3bee0d65e1abb4baa1818edcc9ec239aa9f2ffbfde8084d71c056180054f"; }; doCheck = false; diff --git a/pkgs/development/python-modules/kaitaistruct/default.nix b/pkgs/development/python-modules/kaitaistruct/default.nix index c99619566175..0863cd79f46e 100644 --- a/pkgs/development/python-modules/kaitaistruct/default.nix +++ b/pkgs/development/python-modules/kaitaistruct/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "kaitaistruct"; - version = "0.7"; + version = "0.8"; src = fetchPypi { inherit pname version; - sha256 = "19j3snmr0qbd48f7yd3cc21ffv13dahf8ys591dnalbhvnkar71i"; + sha256 = "d1d17c7f6839b3d28fc22b21295f787974786c2201e8788975e72e2a1d109ff5"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/keras/default.nix b/pkgs/development/python-modules/keras/default.nix index 8ef263cdfa80..4c42a4ebafea 100644 --- a/pkgs/development/python-modules/keras/default.nix +++ b/pkgs/development/python-modules/keras/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "Keras"; - version = "2.1.3"; + version = "2.1.4"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "7ca3a381523bad40a6922e88951a316664cb088fd01cea07e5ec8ada3327e3c7"; + sha256 = "7ee1fcc79072ac904a4f008d715bcb78c60250ae3cd41d99e268c60ade8d0d3a"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/libagent/default.nix b/pkgs/development/python-modules/libagent/default.nix index d6c96534d748..757a171d8381 100644 --- a/pkgs/development/python-modules/libagent/default.nix +++ b/pkgs/development/python-modules/libagent/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "libagent"; - version = "0.9.7"; + version = "0.9.8"; src = fetchPypi{ inherit pname version; - sha256 = "3ae14dc14859f7b4b92583ab0d40884ac07f26dbe00c7b747df2d50f4b1af098"; + sha256 = "7e7d62cedef9d1291b8e77abc463d50b3d685dfd953611d55a0414c12276aa78"; }; buildInputs = [ diff --git a/pkgs/development/python-modules/m2r/default.nix b/pkgs/development/python-modules/m2r/default.nix index e493596cfa59..c1a6721bb804 100644 --- a/pkgs/development/python-modules/m2r/default.nix +++ b/pkgs/development/python-modules/m2r/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "m2r"; name = "${pname}-${version}"; - version = "0.1.12"; + version = "0.1.13"; src = fetchPypi { inherit pname version; - sha256 = "adfb86ebb7ff3fcd3ebb27ce8cd6f795c409a13f0c03363e265f17419ce5b9ab"; + sha256 = "b19e3703a3a897859f01ff6a068ee9a0eea8e8fdf75e896e00e88b3476a12f87"; }; propagatedBuildInputs = [ mistune docutils ]; diff --git a/pkgs/development/python-modules/magic-wormhole/default.nix b/pkgs/development/python-modules/magic-wormhole/default.nix index 6afe4cba00d4..9d2d80747a93 100644 --- a/pkgs/development/python-modules/magic-wormhole/default.nix +++ b/pkgs/development/python-modules/magic-wormhole/default.nix @@ -22,12 +22,12 @@ buildPythonPackage rec { pname = "magic-wormhole"; - version = "0.10.4"; + version = "0.10.5"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "cd3105975e71bc6437848c7fc9f0b23ef0e0c625c8b19ec66a5ddc727c6d11ae"; + sha256 = "9558ea1f3551e535deec3462cd5c8391cb32ebb12ecd8b40b36861dbee4917ee"; }; checkInputs = [ mock ]; diff --git a/pkgs/development/python-modules/natsort/default.nix b/pkgs/development/python-modules/natsort/default.nix index 8e81f923b916..a5940ed6c9f6 100644 --- a/pkgs/development/python-modules/natsort/default.nix +++ b/pkgs/development/python-modules/natsort/default.nix @@ -16,9 +16,8 @@ }: buildPythonPackage rec { - name = "${pname}-${version}"; pname = "natsort"; - version = "5.1.1"; + version = "5.2.0"; buildInputs = [ hypothesis @@ -36,11 +35,9 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "9ffbfb74bf3fc3905be1b9b052ed865675651e38fcd972ed1ed5c64a02f93cbd"; + sha256 = "c960082d2145b04723041c4b85092546560538e29664dd197a1344d5b090bc91"; }; - patches = lib.optional (isPy35 || isPy36) ./python-3.6.3-test-failures.patch; - # testing based on project's tox.ini checkPhase = '' pytest --doctest-modules natsort diff --git a/pkgs/development/python-modules/natsort/python-3.6.3-test-failures.patch b/pkgs/development/python-modules/natsort/python-3.6.3-test-failures.patch deleted file mode 100644 index b304a1d11e52..000000000000 --- a/pkgs/development/python-modules/natsort/python-3.6.3-test-failures.patch +++ /dev/null @@ -1,37 +0,0 @@ -diff --git a/test_natsort/test_string_component_transform_factory.py b/test_natsort/test_string_component_transform_factory.py -index 6790e51..8db4efb 100644 ---- a/test_natsort/test_string_component_transform_factory.py -+++ b/test_natsort/test_string_component_transform_factory.py -@@ -24,6 +24,8 @@ from hypothesis.strategies import ( - ) - from compat.locale import bad_uni_chars - -+import pytest -+ - - # Each test has an "example" version for demonstrative purposes, - # and a test that uses the hypothesis module. -@@ -77,6 +79,7 @@ def test_string_component_transform_factory_with_LOCALE_returns_fast_int_and_gro - assert _string_component_transform_factory(ns.LOCALE)(x) == fast_int(x, key=get_strxfrm()) - - -+@pytest.mark.xfail - @given(text()) - def test_string_component_transform_factory_with_LOCALE_returns_fast_int_and_groupletters(x): - assume(x) -@@ -89,6 +92,7 @@ def test_string_component_transform_factory_with_LOCALE_and_GROUPLETTERS_returns - assert _string_component_transform_factory(ns.GROUPLETTERS | ns.LOCALE)(x) == fast_int(x, key=lambda x: get_strxfrm()(_groupletters(x))) - - -+@pytest.mark.xfail - @given(text()) - def test_string_component_transform_factory_with_LOCALE_and_GROUPLETTERS_returns_fast_int_and_groupletters_and_locale_convert(x): - assume(x) -@@ -104,6 +108,7 @@ def test_string_component_transform_factory_with_LOCALE_and_DUMB_returns_fast_in - assert _string_component_transform_factory(ns._DUMB | ns.LOCALE)(x) == fast_int(x, key=lambda x: get_strxfrm()(_groupletters(x))) - - -+@pytest.mark.xfail - @given(text()) - def test_string_component_transform_factory_with_LOCALE_and_DUMB_returns_fast_int_and_groupletters_and_locale_convert(x): - assume(x) diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix index 2d575d8742aa..f32f417c3917 100644 --- a/pkgs/development/python-modules/numpy/default.nix +++ b/pkgs/development/python-modules/numpy/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "numpy"; - version = "1.13.3"; + version = "1.14.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "36ee86d5adbabc4fa2643a073f93d5504bdfed37a149a3a49f4dde259f35a750"; + sha256 = "3de643935b212307b420248018323a44ec51987a336d1d747c1322afc3c099fb"; }; disabled = isPyPy; diff --git a/pkgs/development/python-modules/numpydoc/default.nix b/pkgs/development/python-modules/numpydoc/default.nix new file mode 100644 index 000000000000..3af324c87652 --- /dev/null +++ b/pkgs/development/python-modules/numpydoc/default.nix @@ -0,0 +1,27 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, sphinx +, jinja2 +}: + +buildPythonPackage rec { + pname = "numpydoc"; + version = "0.7.0"; + + src = fetchPypi { + inherit pname; + inherit version; + sha256 = "2dc7b2c4e3914745e38e370946fa4c109817331e6d450806285c08bce5cd575a"; + }; + + checkInputs = [ nose ]; + propagatedBuildInputs = [ sphinx jinja2 ]; + + meta = { + description = "Sphinx extension to support docstrings in Numpy format"; + homepage = "https://github.com/numpy/numpydoc"; + license = lib.licenses.free; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/oauthenticator/default.nix b/pkgs/development/python-modules/oauthenticator/default.nix index ecb21404a085..362554b9bb89 100644 --- a/pkgs/development/python-modules/oauthenticator/default.nix +++ b/pkgs/development/python-modules/oauthenticator/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "oauthenticator"; - version = "0.7.2"; + version = "0.7.3"; src = fetchPypi { inherit pname version; - sha256 = "0rlg63ii7sxj1xad2nx6wk1xgv3a8dm0az0q9g2v6hdv9cnc4b55"; + sha256 = "cb0b2564e46db28350693bc3e6457333c4ee21af5066ac743730e3f3173ea7ed"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/packaging/default.nix b/pkgs/development/python-modules/packaging/default.nix index 4ba93bb57f20..f335bfa135f9 100644 --- a/pkgs/development/python-modules/packaging/default.nix +++ b/pkgs/development/python-modules/packaging/default.nix @@ -4,7 +4,6 @@ buildPythonPackage rec { pname = "packaging"; version = "16.8"; - name = "${pname}-${version}"; src = fetchPypi { inherit pname version; @@ -13,7 +12,11 @@ buildPythonPackage rec { propagatedBuildInputs = [ pyparsing six ]; - buildInputs = [ pytest pretend ]; + checkInputs = [ pytest pretend ]; + + checkPhase = '' + py.test tests + ''; meta = with stdenv.lib; { description = "Core utilities for Python packages"; diff --git a/pkgs/development/python-modules/pafy/default.nix b/pkgs/development/python-modules/pafy/default.nix index 77ed1d6c4c0a..a1b5c77b2d10 100644 --- a/pkgs/development/python-modules/pafy/default.nix +++ b/pkgs/development/python-modules/pafy/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "pafy"; - version = "0.5.3.1"; + version = "0.5.4"; src = fetchPypi { inherit pname version; - sha256 = "1a7dxi95m1043rxx1r5x3ngb66nwlq6aqcasyqqjzmmmjps4zrim"; + sha256 = "e842dc589a339a870b5869cc3802f2e95824edf347f65128223cd5ebdff21024"; }; # No tests included in archive diff --git a/pkgs/development/python-modules/path.py/default.nix b/pkgs/development/python-modules/path.py/default.nix index 2830477d3cf1..53754fd3dc29 100644 --- a/pkgs/development/python-modules/path.py/default.nix +++ b/pkgs/development/python-modules/path.py/default.nix @@ -5,20 +5,21 @@ , pytestrunner , pytest , glibcLocales +, packaging }: buildPythonPackage rec { pname = "path.py"; - version = "10.5"; + version = "11.0"; name = pname + "-" + version; src = fetchPypi { inherit pname version; - sha256 = "63a7af08676668fd51750f111affbd38c1a13c61aba15c6665b16681771c79a8"; + sha256 = "16134e5b287aba4a4125a6722e7837cf2a149fccc5000c500ae6c71a5525488b"; }; - checkInputs = [ pytest pytestrunner ]; - buildInputs = [setuptools_scm glibcLocales ]; + checkInputs = [ pytest pytestrunner glibcLocales packaging ]; + buildInputs = [ setuptools_scm ]; LC_ALL="en_US.UTF-8"; diff --git a/pkgs/development/python-modules/pendulum/default.nix b/pkgs/development/python-modules/pendulum/default.nix index aa8e2d22b43e..12d5c82d511a 100644 --- a/pkgs/development/python-modules/pendulum/default.nix +++ b/pkgs/development/python-modules/pendulum/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pendulum"; - version = "1.4.0"; + version = "1.4.1"; src = fetchPypi { inherit pname version; - sha256 = "e996c34fb101c9c6d88a839c19af74d7c067b92ed3371274efcf4d4b6dc160a6"; + sha256 = "3f16fb759e6126dd89d49886f8100caa72e5ab36563bc148b4f7eddfa0099c0f"; }; propagatedBuildInputs = [ dateutil pytzdata tzlocal ]; diff --git a/pkgs/development/python-modules/pexpect/default.nix b/pkgs/development/python-modules/pexpect/default.nix index da8d5db359b0..b064b9037e90 100644 --- a/pkgs/development/python-modules/pexpect/default.nix +++ b/pkgs/development/python-modules/pexpect/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "pexpect"; - version = "4.3.1"; + version = "4.4.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "8e287b171dbaf249d0b06b5f2e88cb7e694651d2d0b8c15bccb83170d3c55575"; + sha256 = "67b85a1565968e3d5b5e7c9283caddc90c3947a2625bed1905be27bd5a03e47d"; }; # Wants to run pythonin a subprocess diff --git a/pkgs/development/python-modules/plone-testing/default.nix b/pkgs/development/python-modules/plone-testing/default.nix index 910fc034e365..6f18a74f0738 100644 --- a/pkgs/development/python-modules/plone-testing/default.nix +++ b/pkgs/development/python-modules/plone-testing/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "plone.testing"; - version = "5.1.1"; + version = "6.0.0"; src = fetchPypi { inherit pname version; - sha256 = "2ca558a910b93355b760535b233518be3a06c58e46160487bf802b6f7cb1e511"; + sha256 = "8aa7c45237b883ea1d1c28fb465322f69310b084b9f9b6a79af64401b649dc4c"; }; propagatedBuildInputs = [ setuptools zope_testing ]; diff --git a/pkgs/development/python-modules/plotly/default.nix b/pkgs/development/python-modules/plotly/default.nix index bddff8e95f44..a202ef8b85a5 100644 --- a/pkgs/development/python-modules/plotly/default.nix +++ b/pkgs/development/python-modules/plotly/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "plotly"; - version = "2.3.0"; + version = "2.4.0"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "95e72273699108f215886ab961dbf0890904d39583be39eabcd0788bc7ccf695"; + sha256 = "8e7ee039231fec52b0b38d45e7470f70b117f6527b08cc922d74992f4d082858"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/plumbum/default.nix b/pkgs/development/python-modules/plumbum/default.nix index a5881bb2e7cf..cd4a79104eb8 100644 --- a/pkgs/development/python-modules/plumbum/default.nix +++ b/pkgs/development/python-modules/plumbum/default.nix @@ -6,7 +6,7 @@ buildPythonPackage rec { pname = "plumbum"; - version = "1.6.5"; + version = "1.6.6"; name = "${pname}-${version}"; checkInputs = [ pytest ]; @@ -16,6 +16,6 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "d8abb059bb62beb6c99db08d3598167abaeeab53eaf218f91e74bae471a24bee"; + sha256 = "d179b90a9927f91427a28c1bac2864c61342cb43ef39aa7324c7c9a96bcc23eb"; }; } \ No newline at end of file diff --git a/pkgs/development/python-modules/prov/default.nix b/pkgs/development/python-modules/prov/default.nix index 9dac8677c33b..8866382ea8f2 100644 --- a/pkgs/development/python-modules/prov/default.nix +++ b/pkgs/development/python-modules/prov/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "prov"; - version = "1.5.1"; + version = "1.5.2"; src = fetchPypi { inherit pname version; - sha256 = "7a2d72b0df43cd9c6e374d815c8ce3cd5ca371d54f98f837853ac9fcc98aee4c"; + sha256 = "640dc158d931403bc6c1a0ad80702caae71f810bac21f90ec605865c8444b7bb"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/py_scrypt/default.nix b/pkgs/development/python-modules/py_scrypt/default.nix index bf6300b84119..1b1f758d9413 100644 --- a/pkgs/development/python-modules/py_scrypt/default.nix +++ b/pkgs/development/python-modules/py_scrypt/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "scrypt"; - version = "0.8.0"; + version = "0.8.6"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "0830r3q8f8mc4738ngcvwhv9kih5c6zf87mzkdifzf2h6kss99fl"; + sha256 = "f8239b2d47fa1d40bc27efd231dc7083695d10c1c2ac51a99380360741e0362d"; }; buildInputs = [ openssl ]; diff --git a/pkgs/development/python-modules/pyglet/default.nix b/pkgs/development/python-modules/pyglet/default.nix index 51243154b1a2..8ac066500a4c 100644 --- a/pkgs/development/python-modules/pyglet/default.nix +++ b/pkgs/development/python-modules/pyglet/default.nix @@ -2,12 +2,12 @@ , mesa, xorg, freetype, fontconfig, future}: buildPythonPackage rec { - version = "1.3.0"; + version = "1.3.1"; pname = "pyglet"; src = fetchPypi { inherit pname version; - sha256 = "640a8f8e3d7bf8dbb551fa707f14021f619932990ab1401c48ba9dbcc6c2242c"; + sha256 = "0a73280fa3949ea4890fee28f625c10b1e10a7cda390a08b6bce4740948167cd"; }; postPatch = let diff --git a/pkgs/development/python-modules/pytest-mock/default.nix b/pkgs/development/python-modules/pytest-mock/default.nix index 7cb5224c60b6..51ec2a1f4cbc 100644 --- a/pkgs/development/python-modules/pytest-mock/default.nix +++ b/pkgs/development/python-modules/pytest-mock/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pytest-mock"; - version = "1.6.3"; + version = "1.7.0"; src = fetchPypi { inherit pname version; - sha256 = "920d1167af5c2c2ad3fa0717d0c6c52e97e97810160c15721ac895cac53abb1c"; + sha256 = "8ed6c9ac6b7565b226b4da2da48876c9198d76401ec8d9c5e4c69b45423e33f8"; }; propagatedBuildInputs = [ pytest ] ++ lib.optional (!isPy3k) mock; diff --git a/pkgs/development/python-modules/pytestrunner/default.nix b/pkgs/development/python-modules/pytestrunner/default.nix index 67af195b68a6..4f15adcd90e5 100644 --- a/pkgs/development/python-modules/pytestrunner/default.nix +++ b/pkgs/development/python-modules/pytestrunner/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pytest-runner"; - version = "3.0"; + version = "4.0"; src = fetchPypi { inherit pname version; - sha256 = "00v7pi09q60yx0l1kzyklnmr5bp597mir85a9gsi7bdfyly3lz0g"; + sha256 = "183f3745561b1e00ea51cd97634ba5c540848ab4aa8016a81faba7fb7f33ec76"; }; buildInputs = [ setuptools_scm pytest ]; diff --git a/pkgs/development/python-modules/python-magic/default.nix b/pkgs/development/python-modules/python-magic/default.nix index 56be2e3448ae..d48a6288a7dd 100644 --- a/pkgs/development/python-modules/python-magic/default.nix +++ b/pkgs/development/python-modules/python-magic/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "python-magic"; - version = "0.4.13"; + version = "0.4.15"; src = fetchPypi { inherit pname version; - sha256 = "128j9y30zih6cyjyjnxhghnvpjm8vw40a1q7pgmrp035yvkaqkk0"; + sha256 = "f3765c0f582d2dfc72c15f3b5a82aecfae9498bd29ca840d72f37d7bd38bfcd5"; }; postPatch = '' diff --git a/pkgs/development/python-modules/regex/default.nix b/pkgs/development/python-modules/regex/default.nix index c6279f5e7c41..65de08382239 100644 --- a/pkgs/development/python-modules/regex/default.nix +++ b/pkgs/development/python-modules/regex/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "regex"; - version = "2018.01.10"; + version = "2018.02.08"; src = fetchPypi { inherit pname version; - sha256 = "139678fc013b75e486e580c39b4c52d085ed7362e400960f8be1711a414f16b5"; + sha256 = "2353c0e983c4029caf32016f1dddef623c3117ac282a818468c6d2f5d541698d"; }; meta = { diff --git a/pkgs/development/python-modules/ropper/default.nix b/pkgs/development/python-modules/ropper/default.nix index b35145872dd1..82b809a1e917 100644 --- a/pkgs/development/python-modules/ropper/default.nix +++ b/pkgs/development/python-modules/ropper/default.nix @@ -8,11 +8,11 @@ buildPythonApplication rec { pname = "ropper"; - version = "1.11.3"; + version = "1.11.6"; src = fetchPypi { inherit pname version; - sha256 = "77d9b03083d0a098261a1d2856cd330ea3db520511a78472e421a00526aa220c"; + sha256 = "33777d0c3ddd9ca7bc48f53dbe2c4a222a567f1125c43b1c34fb1b360d0b19dc"; }; # XXX tests rely on user-writeable /dev/shm to obtain process locks and return PermissionError otherwise # workaround: sudo chmod 777 /dev/shm diff --git a/pkgs/development/python-modules/s3transfer/default.nix b/pkgs/development/python-modules/s3transfer/default.nix index 3311af5e8869..9b74b9c8ba35 100644 --- a/pkgs/development/python-modules/s3transfer/default.nix +++ b/pkgs/development/python-modules/s3transfer/default.nix @@ -14,11 +14,11 @@ buildPythonPackage rec { pname = "s3transfer"; - version = "0.1.12"; + version = "0.1.13"; src = fetchPypi { inherit pname version; - sha256 = "07hjj1cy62sc3rh5lhna9mhylp7h7aak4v6mf6809q4nc8j1p28h"; + sha256 = "90dc18e028989c609146e241ea153250be451e05ecc0c2832565231dacdf59c1"; }; foo = 1; diff --git a/pkgs/development/python-modules/sphinx/default.nix b/pkgs/development/python-modules/sphinx/default.nix index 6f3d0b3c117b..2256bcc7310f 100644 --- a/pkgs/development/python-modules/sphinx/default.nix +++ b/pkgs/development/python-modules/sphinx/default.nix @@ -27,10 +27,10 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "Sphinx"; - version = "1.6.6"; + version = "1.7.0"; src = fetchPypi { inherit pname version; - sha256 = "c39a6fa41bd3ec6fc10064329a664ed3a3ca2e27640a823dc520c682e4433cdb"; + sha256 = "278b7923f3f4ed2a1d1359f0ae94d89ac90ddd4189e8362f4b4d3baa2afe6b4a"; }; LC_ALL = "en_US.UTF-8"; diff --git a/pkgs/development/python-modules/sqlalchemy/default.nix b/pkgs/development/python-modules/sqlalchemy/default.nix index 51856ec0da04..18540cb63f8d 100644 --- a/pkgs/development/python-modules/sqlalchemy/default.nix +++ b/pkgs/development/python-modules/sqlalchemy/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "SQLAlchemy"; name = "${pname}-${version}"; - version = "1.2.2"; + version = "1.2.3"; src = fetchPypi { inherit pname version; - sha256 = "64b4720f0a8e033db0154d3824f5bf677cf2797e11d44743cf0aebd2a0499d9d"; + sha256 = "9e9ec143e2e246f385cfb2de8daa89d2fa466279addcb7be9e102988fdf33d24"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/sqlmap/default.nix b/pkgs/development/python-modules/sqlmap/default.nix index dd7fdc173e5e..0fa889b88f26 100644 --- a/pkgs/development/python-modules/sqlmap/default.nix +++ b/pkgs/development/python-modules/sqlmap/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "sqlmap"; - version = "1.2"; + version = "1.2.2"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "18ac6392a710f0cc106c28c4e27e43e8f1b25cb46fb8b6714836212607c07b10"; + sha256 = "6256e0d5ab6d465152c8a8a21bdb97b50e155255d6bedd586ce214ed7a1fb9d7"; }; # No tests in archive diff --git a/pkgs/development/python-modules/stripe/default.nix b/pkgs/development/python-modules/stripe/default.nix index 22c047fc54e2..7e7aa4756bbe 100644 --- a/pkgs/development/python-modules/stripe/default.nix +++ b/pkgs/development/python-modules/stripe/default.nix @@ -3,7 +3,7 @@ buildPythonPackage rec { pname = "stripe"; - version = "1.77.1"; + version = "1.77.2"; name = "${pname}-${version}"; # Tests require network connectivity and there's no easy way to disable @@ -12,7 +12,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "d1c638b417301849ff4ee0327332cfdec96edda83c79b08af307339138077d59"; + sha256 = "3bcd55108dd2c0e853a91147ee843bc375f35767e64d0f7680e5bd82ddb7fbf1"; }; buildInputs = [ unittest2 mock ]; diff --git a/pkgs/development/python-modules/trezor/default.nix b/pkgs/development/python-modules/trezor/default.nix index cb4b63ade81d..d283465b43c5 100644 --- a/pkgs/development/python-modules/trezor/default.nix +++ b/pkgs/development/python-modules/trezor/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { name = "${pname}-${version}"; pname = "trezor"; - version = "0.7.16"; + version = "0.9.0"; src = fetchPypi { inherit pname version; - sha256 = "6bdb69fc125ba705854e21163be6c7da3aa17c2a3a84f40b6d8a3f6e4a8cb314"; + sha256 = "2dd01e11d669cb8f5e40fcf1748bcabc41fb5f41edb010fc807dc3088f9bd7de"; }; propagatedBuildInputs = [ protobuf hidapi requests mnemonic ]; diff --git a/pkgs/development/python-modules/voluptuous/default.nix b/pkgs/development/python-modules/voluptuous/default.nix index 00c13cba0669..0d4f250509f0 100644 --- a/pkgs/development/python-modules/voluptuous/default.nix +++ b/pkgs/development/python-modules/voluptuous/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "voluptuous"; - version = "0.10.5"; + version = "0.11.1"; src = fetchPypi { inherit pname version; - sha256 = "15i3gaap8ilhpbah1ffc6q415wkvliqxilc6s69a4rinvkw6cx3s"; + sha256 = "af7315c9fa99e0bfd195a21106c82c81619b42f0bd9b6e287b797c6b6b6a9918"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/webcolors/default.nix b/pkgs/development/python-modules/webcolors/default.nix index c23bffaf142f..d530eda39d97 100644 --- a/pkgs/development/python-modules/webcolors/default.nix +++ b/pkgs/development/python-modules/webcolors/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "webcolors"; - version = "1.7"; + version = "1.8.1"; src = fetchPypi { inherit pname version; - sha256 = "e47e68644d41c0b1f1e4d939cfe4039bdf1ab31234df63c7a4f59d4766487206"; + sha256 = "030562f624467a9901f0b455fef05486a88cfb5daa1e356bd4aacea043850b59"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/widgetsnbextension/default.nix b/pkgs/development/python-modules/widgetsnbextension/default.nix index e455f2334110..3228e928e193 100644 --- a/pkgs/development/python-modules/widgetsnbextension/default.nix +++ b/pkgs/development/python-modules/widgetsnbextension/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "widgetsnbextension"; name = "${pname}-${version}"; - version = "3.1.3"; + version = "3.1.4"; src = fetchPypi { inherit pname version; - sha256 = "02edabcaeaa247721df8027f660f3384c20f30c4865a7ea5dd80685c368736df"; + sha256 = "79f164a644620abbe351440a70468ac3a5b22b392afa4577c8d5f91577a2669b"; }; propagatedBuildInputs = [ notebook ]; diff --git a/pkgs/development/python-modules/yapf/default.nix b/pkgs/development/python-modules/yapf/default.nix index 05913ab61c5e..d257db704451 100644 --- a/pkgs/development/python-modules/yapf/default.nix +++ b/pkgs/development/python-modules/yapf/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "yapf"; - version = "0.20.1"; + version = "0.20.2"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "bd19f246be7193ad2acdc04702b92315f1ae28d49c82f6671afdeefe9d32f468"; + sha256 = "7f5efdb7edf0318b91e53721d934580a77153e24a222f52f6e1c3b7629aead43"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/zodbpickle/default.nix b/pkgs/development/python-modules/zodbpickle/default.nix index 53dd8680c315..108f5395ece4 100644 --- a/pkgs/development/python-modules/zodbpickle/default.nix +++ b/pkgs/development/python-modules/zodbpickle/default.nix @@ -5,13 +5,13 @@ buildPythonPackage rec { pname = "zodbpickle"; - version = "0.7.0"; + version = "1.0"; name = "${pname}-${version}"; disabled = isPyPy; # https://github.com/zopefoundation/zodbpickle/issues/10 src = fetchPypi { inherit pname version; - sha256 = "95a247fb17bce980af8d548af70ac5bd1bad22773f242eb8efa24428efa909a8"; + sha256 = "3af9169fb1d5901cf6693ab356b0dfda20ad2cacc5673fad59b4449ed50d5399"; }; # fails.. diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index edc3539b0bdf..cb9424ad5cfc 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -28,6 +28,13 @@ let sha256 = "14zbnbn53yvrpv79ch6n02myq9b4winjkaykzi356sfqb7f3d16g"; }; }); + voluptuous = super.voluptuous.overridePythonAttrs (oldAttrs: rec { + version = "0.10.5"; + src = oldAttrs.src.override { + inherit version; + sha256 = "15i3gaap8ilhpbah1ffc6q415wkvliqxilc6s69a4rinvkw6cx3s"; + }; + }); hass-frontend = super.callPackage ./frontend.nix { }; }; }; diff --git a/pkgs/stdenv/generic/setup.sh b/pkgs/stdenv/generic/setup.sh index e4a77af199b9..d7a4781448ae 100644 --- a/pkgs/stdenv/generic/setup.sh +++ b/pkgs/stdenv/generic/setup.sh @@ -866,7 +866,7 @@ unpackPhase() { # necessary when sources have been copied from other store # locations. if [ "${dontMakeSourcesWritable:-0}" != 1 ]; then - chmod -R u+w "$sourceRoot" + chmod -R u+w -- "$sourceRoot" fi runHook postUnpack diff --git a/pkgs/tools/admin/awscli/default.nix b/pkgs/tools/admin/awscli/default.nix index ef5afb917663..4c6a91ec321b 100644 --- a/pkgs/tools/admin/awscli/default.nix +++ b/pkgs/tools/admin/awscli/default.nix @@ -26,12 +26,12 @@ let in buildPythonPackage rec { pname = "awscli"; - version = "1.14.32"; + version = "1.14.41"; namePrefix = ""; src = fetchPypi { inherit pname version; - sha256 = "09i82nf43pv5v598wvbj4nk1bfc64wp7xzlx5ykaca5m40lkarz0"; + sha256 = "8cf2a52d56f26e22e2fbd7b72649ef1d3de8930df7a730d7f27418d129bb3a6a"; }; # No tests included diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 0eebd578c3a3..8efafc260c44 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -11430,25 +11430,7 @@ in { blas = pkgs.openblasCompat; }; - numpydoc = buildPythonPackage rec { - pname = "numpydoc"; - name = "${pname}-${version}"; - version = "0.6.0"; - - src = pkgs.fetchurl { - url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${name}.tar.gz"; - sha256 = "1ec573e91f6d868a9940d90a6599f3e834a2d6c064030fbe078d922ee21dcfa1"; - }; - - buildInputs = [ self.nose ]; - propagatedBuildInputs = [ self.sphinx self.matplotlib ]; - - meta = { - description = "Sphinx extension to support docstrings in Numpy format"; - homepage = "https://github.com/numpy/numpydoc"; - license = licenses.free; - }; - }; + numpydoc = callPackage ../development/python-modules/numpydoc { }; numpy-stl = callPackage ../development/python-modules/numpy-stl { };