Disable some broken R packages.
This commit is contained in:
Peter Simons
parent
d5017499a2
commit
80101c8329
@ -647,286 +647,289 @@ let
|
|||||||
];
|
];
|
||||||
|
|
||||||
# Packages which cannot be installed due to lack of dependencies or other reasons.
|
# Packages which cannot be installed due to lack of dependencies or other reasons.
|
||||||
brokenPackages = [ # sort -t '#' -k 2
|
brokenPackages = [
|
||||||
"V8" # compilation error
|
|
||||||
"metabolomics" # depends on broken crmn
|
|
||||||
"selectspm" # depends on broken ecespa
|
|
||||||
"BLCOP" # depends on broken fPortfolio
|
|
||||||
"MXM" # depends on broken gRbase
|
|
||||||
"bamboo" # depends on broken jvmr
|
|
||||||
"flexCWM" # depends on broken mixture
|
|
||||||
"pmcgd" # depends on broken mixture
|
|
||||||
"retistruct" # depends on broken RImageJROI
|
|
||||||
"ROI_plugin_symphony" # depends on broken Rsymphony
|
|
||||||
"ChemoSpec" # depends on broken speaq
|
|
||||||
"CARrampsOcl" # depends on OpenCL
|
|
||||||
"gmatrix" # depends on proprietary cudatoolkit
|
|
||||||
"gputools" # depends on proprietary cudatoolkit
|
|
||||||
"iFes" # depends on proprietary cudatoolkit
|
|
||||||
"SOD" # depends on proprietary cudatoolkit
|
|
||||||
"WideLM" # depends on proprietary cudatoolkit
|
|
||||||
"OpenCL" # FIXME: requires CL/opencl.h
|
|
||||||
"Rsymphony" # FIXME: requires SYMPHONY
|
|
||||||
"rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
|
|
||||||
"jomo" # linking errors
|
|
||||||
"mixture" # mixture.so: undefined symbol: dtrmm_
|
|
||||||
"rDEA" # no such file or directory
|
|
||||||
"demi" # requires affy, affxparser, and oligo
|
|
||||||
"KANT" # requires affy, and Biobase
|
|
||||||
"pathClass" # requires affy, and Biobase
|
|
||||||
"msarc" # requires AnnotationDbi
|
|
||||||
"ppiPre" # requires AnnotationDbi, GOSemSim, GO.db
|
|
||||||
"ACNE" # requires aroma_affymetrix
|
"ACNE" # requires aroma_affymetrix
|
||||||
"aroma_affymetrix" # requires aroma_core
|
"Actigraphy" # SDMTools.so: undefined symbol: X
|
||||||
"calmate" # requires aroma_core
|
"adaptsmoFMRI" # requires spatstat
|
||||||
"NSA" # requires aroma_core
|
"ads" # requires spatstat
|
||||||
"beadarrayFilter" # requires beadarray
|
"agridat" # requires pcaMethods
|
||||||
"compendiumdb" # requires Biobase
|
"aLFQ" # requires protiq
|
||||||
"ktspair" # requires Biobase
|
|
||||||
"MetaLandSim" # requires Biobase
|
|
||||||
"permGPU" # requires Biobase
|
|
||||||
"propOverlap" # requires Biobase
|
|
||||||
"RobLoxBioC" # requires Biobase
|
|
||||||
"RobLox" # requires Biobase
|
|
||||||
"IsoGene" # requires Biobase, and affy
|
|
||||||
"mGSZ" # requires Biobase, and limma
|
|
||||||
"GExMap" # requires Biobase and multtest
|
|
||||||
"Statomica" # requires Biobase, multtest
|
|
||||||
"netweavers" # requires BiocGenerics, Biobase, and limma
|
|
||||||
"NCmisc" # requires BiocInstaller
|
|
||||||
"EMDomics" # requires BiocParallel
|
|
||||||
"PepPrep" # requires biomaRt
|
|
||||||
"snplist" # requires biomaRt
|
|
||||||
"ionflows" # requires Biostrings
|
|
||||||
"RADami" # requires Biostrings
|
|
||||||
"SimRAD" # requires Biostrings, and ShortRead
|
|
||||||
"SeqFeatR" # requires Biostrings, qvalue, and widgetTools
|
|
||||||
"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
|
|
||||||
"FunctionalNetworks" # requires breastCancerVDX, and Biobase
|
|
||||||
"js" # requires broken V8
|
|
||||||
"minimist" # requires broken V8
|
|
||||||
"rJPSGCS" # requires chopsticks
|
|
||||||
"clpAPI" # requires clp
|
|
||||||
"pcaL1" # requires clp
|
|
||||||
"bmrm" # requires clpAPI
|
|
||||||
"sequenza" # requires copynumber
|
|
||||||
"cplexAPI" # requires CPLEX
|
|
||||||
"Rcplex" # requires cplexAPI
|
|
||||||
"empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges
|
|
||||||
"CHAT" # requires DNAcopy
|
|
||||||
"ParDNAcopy" # requires DNAcopy
|
|
||||||
"PSCBS" # requires DNAcopy
|
|
||||||
"dcGOR" # requires dnet
|
|
||||||
"gitter" # requires EBImage
|
|
||||||
"Rcell" # requires EBImage
|
|
||||||
"RockFab" # requires EBImage
|
|
||||||
"babel" # requires edgeR
|
|
||||||
"edgeRun" # requires edgeR
|
|
||||||
"fdrDiscreteNull" # requires edgeR
|
|
||||||
"GSAgm" # requires edgeR
|
|
||||||
"HTSCluster" # requires edgeR
|
|
||||||
"QuasiSeq" # requires edgeR
|
|
||||||
"SimSeq" # requires edgeR
|
|
||||||
"BcDiag" # requires fabia
|
|
||||||
"superbiclust" # requires fabia
|
|
||||||
"curvHDR" # requires flowCore
|
|
||||||
"RbioRXN" # requires fmcsR, and KEGGREST
|
|
||||||
"qdap" # requires gender
|
|
||||||
"orQA" # requires genefilter
|
|
||||||
"apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light
|
|
||||||
"ExomeDepth" # requires GenomicRanges, and Rsamtools
|
|
||||||
"rggobi" # requires GGobi
|
|
||||||
"miRtest" # requires globaltest, GlobalAncova, and limma
|
|
||||||
"PANDA" # requires GO.db
|
|
||||||
"BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db
|
|
||||||
"PubMedWordcloud" # requires GOsummaries
|
|
||||||
"eulerian" # requires graph
|
|
||||||
"gRapHD" # requires graph
|
|
||||||
"msSurv" # requires graph
|
|
||||||
"PairViz" # requires graph
|
|
||||||
"iRefR" # requires graph, and RBGL
|
|
||||||
"pcalg" # requires graph, and RBGL
|
|
||||||
"protiq" # requires graph, and RBGL
|
|
||||||
"RnavGraph" # requires graph, and RBGL
|
|
||||||
"classGraph" # requires graph, and Rgraphviz
|
|
||||||
"epoc" # requires graph, and Rgraphviz
|
|
||||||
"gridGraphviz" # requires graph, and Rgraphviz
|
|
||||||
"QuACN" # requires graph, RBGL
|
|
||||||
"D2C" # requires gRbase
|
|
||||||
"gRain" # requires gRbase
|
|
||||||
"gRc" # requires gRbase
|
|
||||||
"gRim" # requires gRbase
|
|
||||||
"LogisticDx" # requires gRbase
|
|
||||||
"topologyGSA" # requires gRbase
|
|
||||||
"gridDebug" # requires gridGraphviz
|
|
||||||
"RAM" # requires Heatplus
|
|
||||||
"RcppRedis" # requires Hiredis
|
|
||||||
"interval" # requires Icens
|
|
||||||
"FAMT" # requires impute
|
|
||||||
"moduleColor" # requires impute
|
|
||||||
"PMA" # requires impute
|
|
||||||
"samr" # requires impute
|
|
||||||
"swamp" # requires impute
|
|
||||||
"WGCNA" # requires impute
|
|
||||||
"MetaDE" # requires impute, and Biobase
|
|
||||||
"FHtest" # requires interval
|
|
||||||
"MSIseq" # requires IRanges
|
|
||||||
"SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools
|
|
||||||
"RefFreeEWAS" # requires isva
|
|
||||||
"PhViD" # requires LBE
|
|
||||||
"AntWeb" # requires leafletR
|
"AntWeb" # requires leafletR
|
||||||
"ecoengine" # requires leafletR
|
"aoristic" # requires spatstat
|
||||||
"spocc" # requires leafletR
|
"apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light
|
||||||
"RDieHarder" # requires libdieharder
|
"aroma_affymetrix" # requires aroma_core
|
||||||
"sybilSBML" # requires libSBML
|
"aroma_cn" # requires PSCBS
|
||||||
"CORM" # requires limma
|
"aroma_core" # requires PSCBS
|
||||||
"DAAGbio" # requires limma
|
"ArrayBin" # requires SAGx
|
||||||
"DCGL" # requires limma
|
"babel" # requires edgeR
|
||||||
"metaMA" # requires limma
|
"BACA" # requires RDAVIDWebService
|
||||||
"plmDE" # requires limma
|
"bamboo" # depends on broken jvmr
|
||||||
"SQDA" # requires limma
|
"BcDiag" # requires fabia
|
||||||
"PerfMeas" # requires limma, graph, and RBGL
|
"bdvis" # requres taxize
|
||||||
"rLindo" # requires LINDO API
|
"beadarrayFilter" # requires beadarray
|
||||||
"magma" # requires MAGMA
|
"beadarrayMSV" # requires rggobi
|
||||||
"HiPLARM" # requires MAGMA or PLASMA
|
|
||||||
"speaq" # requires MassSpecWavelet
|
|
||||||
"MAMA" # requires metaMA
|
|
||||||
"Rmosek" # requires mosek
|
|
||||||
"bigGP" # requires MPI running. HELP WANTED!
|
"bigGP" # requires MPI running. HELP WANTED!
|
||||||
"doMPI" # requires MPI running. HELP WANTED!
|
|
||||||
"metaMix" # requires MPI running. HELP WANTED!
|
|
||||||
"pmclust" # requires MPI running. HELP WANTED!
|
|
||||||
"MSeasyTkGUI" # requires MSeasyTkGUI
|
|
||||||
"hddplot" # requires multtest
|
|
||||||
"mutoss" # requires multtest
|
|
||||||
"PCS" # requires multtest
|
|
||||||
"structSSI" # requires multtest
|
|
||||||
"TcGSA" # requires multtest
|
|
||||||
"mutossGUI" # requires mutoss
|
|
||||||
"Biograph" # requires mvna
|
|
||||||
"MSeasy" # requires mzR, and xcms
|
|
||||||
"bigpca" # requires NCmisc
|
"bigpca" # requires NCmisc
|
||||||
"reader" # requires NCmisc
|
"Biograph" # requires mvna
|
||||||
"ROracle" # requires OCI
|
"biotools" # requires rpanel
|
||||||
|
"BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db
|
||||||
|
"BLCOP" # depends on broken fPortfolio
|
||||||
|
"bmrm" # requires clpAPI
|
||||||
|
"branchLars" # requires Rgraphviz
|
||||||
"BRugs" # requires OpenBUGS
|
"BRugs" # requires OpenBUGS
|
||||||
"x_ent" # requires opencpu
|
"calmate" # requires aroma_core
|
||||||
|
"CARrampsOcl" # depends on OpenCL
|
||||||
|
"CHAT" # requires DNAcopy
|
||||||
|
"ChemoSpec" # depends on broken speaq
|
||||||
|
"classGraph" # requires graph, and Rgraphviz
|
||||||
|
"clpAPI" # requires clp
|
||||||
|
"clusterfly" # requires rggobi
|
||||||
|
"compendiumdb" # requires Biobase
|
||||||
|
"CORM" # requires limma
|
||||||
|
"cplexAPI" # requires CPLEX
|
||||||
|
"cqrReg" # requires Rmosek
|
||||||
|
"crmn" # requires pcaMethods, and Biobase
|
||||||
|
"CrypticIBDcheck" # requires rJPSGCS
|
||||||
|
"cudaBayesreg" # requres Rmath
|
||||||
|
"curvHDR" # requires flowCore
|
||||||
|
"D2C" # requires gRbase
|
||||||
|
"DAAGbio" # requires limma
|
||||||
|
"dagbag" # requires Rlapack
|
||||||
|
"DBKGrad" # requires SDD
|
||||||
|
"dbmss" # requires spatstat
|
||||||
|
"DCGL" # requires limma
|
||||||
|
"dcGOR" # requires dnet
|
||||||
|
"demi" # requires affy, affxparser, and oligo
|
||||||
|
"DepthProc" # requires samr
|
||||||
|
"Digiroo2" # requires spatstat
|
||||||
|
"dixon" # requires spatstat
|
||||||
|
"dnet" # requires supraHex, graph, Rgraphviz, and Biobase
|
||||||
|
"doMPI" # requires MPI running. HELP WANTED!
|
||||||
|
"dpcR" # requires spatstat
|
||||||
|
"DSpat" # requires spatstat
|
||||||
|
"ecespa" # requires spatstat
|
||||||
|
"ecoengine" # requires leafletR
|
||||||
|
"ecospat" # requires spatstat
|
||||||
|
"edgeRun" # requires edgeR
|
||||||
|
"EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi
|
||||||
|
"EMDomics" # requires BiocParallel
|
||||||
|
"empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges
|
||||||
|
"epoc" # requires graph, and Rgraphviz
|
||||||
|
"erpR" # requires rpanel
|
||||||
|
"ETAS" # requires spatstat
|
||||||
|
"eulerian" # requires graph
|
||||||
|
"evobiR" # requres taxiz
|
||||||
|
"evora" # requires qvalue
|
||||||
|
"ExomeDepth" # requires GenomicRanges, and Rsamtools
|
||||||
|
"FAMT" # requires impute
|
||||||
|
"fdrDiscreteNull" # requires edgeR
|
||||||
|
"FHtest" # requires interval
|
||||||
|
"flexCWM" # depends on broken mixture
|
||||||
|
"fPortfolio" # requires rneos
|
||||||
|
"FunctionalNetworks" # requires breastCancerVDX, and Biobase
|
||||||
|
"gamlss_demo" # requires rpanel
|
||||||
|
"GeneticTools" # requires snpStats
|
||||||
|
"GExMap" # requires Biobase and multtest
|
||||||
|
"gitter" # requires EBImage
|
||||||
|
"gmatrix" # depends on proprietary cudatoolkit
|
||||||
|
"GOGANPA" # requires WGCNA
|
||||||
|
"gputools" # depends on proprietary cudatoolkit
|
||||||
|
"gRain" # requires gRbase
|
||||||
|
"gRapHD" # requires graph
|
||||||
|
"gRbase" # requires RBGL, and graph
|
||||||
|
"gRc" # requires gRbase
|
||||||
|
"gridDebug" # requires gridGraphviz
|
||||||
|
"gridGraphviz" # requires graph, and Rgraphviz
|
||||||
|
"GriegSmith" # requires spatstat
|
||||||
|
"gRim" # requires gRbase
|
||||||
|
"GSAgm" # requires edgeR
|
||||||
|
"GUIDE" # requires rpanel
|
||||||
|
"h2o" # tries to download some h2o.jar during its build
|
||||||
|
"hasseDiagram" # requires Rgraphviz
|
||||||
|
"hddplot" # requires multtest
|
||||||
|
"HierO" # requires rneos
|
||||||
|
"HiPLARM" # requires MAGMA or PLASMA
|
||||||
|
"hpoPlot" # requires Rgraphviz
|
||||||
|
"HTSCluster" # requires edgeR
|
||||||
|
"iFes" # depends on proprietary cudatoolkit
|
||||||
|
"imputeLCMD" # requires pcaMethods, and impute
|
||||||
|
"intamapInteractive" # requires spatstat
|
||||||
|
"interval" # requires Icens
|
||||||
|
"ionflows" # requires Biostrings
|
||||||
|
"iRefR" # requires graph, and RBGL
|
||||||
|
"IsoGene" # requires Biobase, and affy
|
||||||
|
"isva" # requires qvalue
|
||||||
|
"jomo" # linking errors
|
||||||
|
"js" # requires broken V8
|
||||||
|
"jvmr" # tries to download files during its build
|
||||||
|
"KANT" # requires affy, and Biobase
|
||||||
|
"ktspair" # requires Biobase
|
||||||
|
"latticeDensity" # requires spatstat
|
||||||
|
"leapp" # requires sva
|
||||||
|
"lefse" # SDMTools.so: undefined symbol: X
|
||||||
|
"lgcp" # requires rpanel
|
||||||
|
"LinRegInteractive" # requires Rpanel
|
||||||
|
"LogisticDx" # requires gRbase
|
||||||
|
"LOST" # requires pcaMethods
|
||||||
|
"ltsk" # requires Rlapack and Rblas
|
||||||
|
"magma" # requires MAGMA
|
||||||
|
"MAMA" # requires metaMA
|
||||||
|
"MEET" # requires pcaMethods, and seqLogo
|
||||||
|
"metabolomics" # depends on broken crmn
|
||||||
|
"MetaDE" # requires impute, and Biobase
|
||||||
|
"MetaLandSim" # requires Biobase
|
||||||
|
"metaMA" # requires limma
|
||||||
|
"metaMix" # requires MPI running. HELP WANTED!
|
||||||
|
"mGSZ" # requires Biobase, and limma
|
||||||
|
"MigClim" # SDMTools.So: Undefined Symbol: X
|
||||||
|
"minimist" # requires broken V8
|
||||||
|
"miRtest" # requires globaltest, GlobalAncova, and limma
|
||||||
|
"mixture" # mixture.so: undefined symbol: dtrmm_
|
||||||
|
"moduleColor" # requires impute
|
||||||
|
"msarc" # requires AnnotationDbi
|
||||||
|
"MSeasy" # requires mzR, and xcms
|
||||||
|
"MSeasyTkGUI" # requires MSeasyTkGUI
|
||||||
|
"MSIseq" # requires IRanges
|
||||||
|
"msSurv" # requires graph
|
||||||
|
"multiDimBio" # requires pcaMethods
|
||||||
|
"mutossGUI" # requires mutoss
|
||||||
|
"mutoss" # requires multtest
|
||||||
|
"MXM" # depends on broken gRbase
|
||||||
|
"NBPSeq" # requires qvalue
|
||||||
|
"NCmisc" # requires BiocInstaller
|
||||||
|
"netClass" # requires samr
|
||||||
|
"nettools" # requires WGCNA
|
||||||
|
"netweavers" # requires BiocGenerics, Biobase, and limma
|
||||||
|
"NLPutils" # requires qdap
|
||||||
|
"NSA" # requires aroma_core
|
||||||
|
"OpenCL" # FIXME: requires CL/opencl.h
|
||||||
|
"optBiomarker" # requires rpanel
|
||||||
|
"ora" # requires ROracle
|
||||||
|
"orQA" # requires genefilter
|
||||||
|
"PairViz" # requires graph
|
||||||
|
"PANDA" # requires GO.db
|
||||||
|
"ParDNAcopy" # requires DNAcopy
|
||||||
|
"pathClass" # requires affy, and Biobase
|
||||||
|
"PatternClass" # SDMTools.So: Undefined Symbol: X
|
||||||
"pbdBASE" # requires pbdMPI
|
"pbdBASE" # requires pbdMPI
|
||||||
"pbdDEMO" # requires pbdMPI
|
"pbdDEMO" # requires pbdMPI
|
||||||
"pbdDMAT" # requires pbdMPI
|
"pbdDMAT" # requires pbdMPI
|
||||||
"pbdSLAP" # requires pbdMPI
|
"pbdSLAP" # requires pbdMPI
|
||||||
"qtlnet" # requires pcalg
|
"pcaL1" # requires clp
|
||||||
"agridat" # requires pcaMethods
|
"pcalg" # requires graph, and RBGL
|
||||||
"LOST" # requires pcaMethods
|
|
||||||
"multiDimBio" # requires pcaMethods
|
|
||||||
"crmn" # requires pcaMethods, and Biobase
|
|
||||||
"imputeLCMD" # requires pcaMethods, and impute
|
|
||||||
"MEET" # requires pcaMethods, and seqLogo
|
|
||||||
"saps" # requires piano, and survcomp
|
|
||||||
"smart" # requires PMA
|
|
||||||
"surveillance" # requires polyCub
|
|
||||||
"aLFQ" # requires protiq
|
|
||||||
"aroma_cn" # requires PSCBS
|
|
||||||
"aroma_core" # requires PSCBS
|
|
||||||
"NLPutils" # requires qdap
|
|
||||||
"RQuantLib" # requires QuantLib
|
|
||||||
"evora" # requires qvalue
|
|
||||||
"isva" # requires qvalue
|
|
||||||
"NBPSeq" # requires qvalue
|
|
||||||
"pi0" # requires qvalue
|
|
||||||
"RSNPset" # requires qvalue
|
|
||||||
"gRbase" # requires RBGL, and graph
|
|
||||||
"RSeed" # requires RBGL, and graph
|
|
||||||
"BACA" # requires RDAVIDWebService
|
|
||||||
"beadarrayMSV" # requires rggobi
|
|
||||||
"clusterfly" # requires rggobi
|
|
||||||
"PKgraph" # requires rggobi
|
|
||||||
"SeqGrapheR" # requires rggobi
|
|
||||||
"branchLars" # requires Rgraphviz
|
|
||||||
"hasseDiagram" # requires Rgraphviz
|
|
||||||
"hpoPlot" # requires Rgraphviz
|
|
||||||
"strum" # requires Rgraphviz
|
|
||||||
"CrypticIBDcheck" # requires rJPSGCS
|
|
||||||
"dagbag" # requires Rlapack
|
|
||||||
"ltsk" # requires Rlapack and Rblas
|
|
||||||
"cqrReg" # requires Rmosek
|
|
||||||
"REBayes" # requires Rmosek
|
|
||||||
"fPortfolio" # requires rneos
|
|
||||||
"HierO" # requires rneos
|
|
||||||
"ora" # requires ROracle
|
|
||||||
"biotools" # requires rpanel
|
|
||||||
"erpR" # requires rpanel
|
|
||||||
"gamlss_demo" # requires rpanel
|
|
||||||
"GUIDE" # requires rpanel
|
|
||||||
"lgcp" # requires rpanel
|
|
||||||
"optBiomarker" # requires rpanel
|
|
||||||
"SDD" # requires rpanel
|
|
||||||
"soilphysics" # requires rpanel
|
|
||||||
"vows" # requires rpanel
|
|
||||||
"LinRegInteractive" # requires Rpanel
|
|
||||||
"RVideoPoker" # requires Rpanel
|
|
||||||
"semiArtificial" # requires RSNNS
|
|
||||||
"PCGSE" # requires safe
|
"PCGSE" # requires safe
|
||||||
"ArrayBin" # requires SAGx
|
"PCS" # requires multtest
|
||||||
"DepthProc" # requires samr
|
"PepPrep" # requires biomaRt
|
||||||
"netClass" # requires samr
|
"PerfMeas" # requires limma, graph, and RBGL
|
||||||
"RSAP" # requires SAPNWRFCSDK
|
"permGPU" # requires Biobase
|
||||||
"DBKGrad" # requires SDD
|
"PhViD" # requires LBE
|
||||||
"RcmdrPlugin_seeg" # requires seeg
|
"pi0" # requires qvalue
|
||||||
"EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi
|
"PKgraph" # requires rggobi
|
||||||
"GeneticTools" # requires snpStats
|
"plmDE" # requires limma
|
||||||
"snpEnrichment" # requires snpStats
|
"plsRcox" # requires survcomp
|
||||||
"snpStatsWriter" # requires snpStats
|
"PMA" # requires impute
|
||||||
"wgsea" # requires snpStats
|
"pmcgd" # depends on broken mixture
|
||||||
"rysgran" # requires soiltexture
|
"pmclust" # requires MPI running. HELP WANTED!
|
||||||
"adaptsmoFMRI" # requires spatstat
|
|
||||||
"ads" # requires spatstat
|
|
||||||
"aoristic" # requires spatstat
|
|
||||||
"dbmss" # requires spatstat
|
|
||||||
"Digiroo2" # requires spatstat
|
|
||||||
"dixon" # requires spatstat
|
|
||||||
"dpcR" # requires spatstat
|
|
||||||
"DSpat" # requires spatstat
|
|
||||||
"ecespa" # requires spatstat
|
|
||||||
"ecospat" # requires spatstat
|
|
||||||
"ETAS" # requires spatstat
|
|
||||||
"GriegSmith" # requires spatstat
|
|
||||||
"intamapInteractive" # requires spatstat
|
|
||||||
"latticeDensity" # requires spatstat
|
|
||||||
"polyCub" # requires spatstat
|
"polyCub" # requires spatstat
|
||||||
|
"ppiPre" # requires AnnotationDbi, GOSemSim, GO.db
|
||||||
|
"propOverlap" # requires Biobase
|
||||||
|
"protiq" # requires graph, and RBGL
|
||||||
|
"PSCBS" # requires DNAcopy
|
||||||
|
"pubmed_mineR" # requires SSOAP
|
||||||
|
"PubMedWordcloud" # requires GOsummaries
|
||||||
|
"qdap" # requires gender
|
||||||
|
"qtlnet" # requires pcalg
|
||||||
|
"qtpaint" # can't find QtCore libraries
|
||||||
|
"QuACN" # requires graph, RBGL
|
||||||
|
"QuasiSeq" # requires edgeR
|
||||||
|
"RADami" # requires Biostrings
|
||||||
|
"raincpc" # SDMTools.so: undefined symbol: X
|
||||||
|
"rainfreq" # SDMTools.so: undefined symbol: X
|
||||||
|
"RAM" # requires Heatplus
|
||||||
|
"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
|
||||||
|
"RbioRXN" # requires fmcsR, and KEGGREST
|
||||||
|
"Rcell" # requires EBImage
|
||||||
|
"RcmdrPlugin_seeg" # requires seeg
|
||||||
|
"Rcplex" # requires cplexAPI
|
||||||
|
"RcppRedis" # requires Hiredis
|
||||||
|
"rDEA" # no such file or directory
|
||||||
|
"RDieHarder" # requires libdieharder
|
||||||
|
"reader" # requires NCmisc
|
||||||
|
"REBayes" # requires Rmosek
|
||||||
|
"RefFreeEWAS" # requires isva
|
||||||
|
"retistruct" # depends on broken RImageJROI
|
||||||
|
"rggobi" # requires GGobi
|
||||||
"RImageJROI" # requires spatstat
|
"RImageJROI" # requires spatstat
|
||||||
|
"rJPSGCS" # requires chopsticks
|
||||||
|
"rLindo" # requires LINDO API
|
||||||
|
"Rmosek" # requires mosek
|
||||||
|
"RnavGraph" # requires graph, and RBGL
|
||||||
|
"rneos" # requires XMLRPC
|
||||||
|
"RNeXML" # requres taxize
|
||||||
|
"RobLoxBioC" # requires Biobase
|
||||||
|
"RobLox" # requires Biobase
|
||||||
|
"RockFab" # requires EBImage
|
||||||
|
"ROI_plugin_symphony" # depends on broken Rsymphony
|
||||||
|
"ROracle" # requires OCI
|
||||||
|
"rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
|
||||||
|
"RQuantLib" # requires QuantLib
|
||||||
|
"RSAP" # requires SAPNWRFCSDK
|
||||||
|
"RSeed" # requires RBGL, and graph
|
||||||
|
"rsig" # requires survcomp
|
||||||
|
"RSNPset" # requires qvalue
|
||||||
|
"rsprng" # requres sprng
|
||||||
|
"Rsymphony" # FIXME: requires SYMPHONY
|
||||||
|
"RVideoPoker" # requires Rpanel
|
||||||
|
"rysgran" # requires soiltexture
|
||||||
|
"samr" # requires impute
|
||||||
|
"saps" # requires piano, and survcomp
|
||||||
|
"SDD" # requires rpanel
|
||||||
"seeg" # requires spatstat
|
"seeg" # requires spatstat
|
||||||
|
"selectspm" # depends on broken ecespa
|
||||||
|
"semiArtificial" # requires RSNNS
|
||||||
|
"SeqFeatR" # requires Biostrings, qvalue, and widgetTools
|
||||||
|
"SeqGrapheR" # requires rggobi
|
||||||
|
"sequenza" # requires copynumber
|
||||||
"SGCS" # requires spatstat
|
"SGCS" # requires spatstat
|
||||||
"siar" # requires spatstat
|
"siar" # requires spatstat
|
||||||
|
"SimRAD" # requires Biostrings, and ShortRead
|
||||||
|
"SimSeq" # requires edgeR
|
||||||
"siplab" # requires spatstat
|
"siplab" # requires spatstat
|
||||||
|
"smart" # requires PMA
|
||||||
|
"snpEnrichment" # requires snpStats
|
||||||
|
"snplist" # requires biomaRt
|
||||||
|
"snpStatsWriter" # requires snpStats
|
||||||
|
"SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools
|
||||||
|
"SOD" # depends on proprietary cudatoolkit
|
||||||
|
"soilphysics" # requires rpanel
|
||||||
"sparr" # requires spatstat
|
"sparr" # requires spatstat
|
||||||
"spatialsegregation" # requires spatstat
|
"spatialsegregation" # requires spatstat
|
||||||
"SpatialVx" # requires spatstat
|
"SpatialVx" # requires spatstat
|
||||||
|
"speaq" # requires MassSpecWavelet
|
||||||
|
"spocc" # requires leafletR
|
||||||
|
"SQDA" # requires limma
|
||||||
|
"Statomica" # requires Biobase, multtest
|
||||||
|
"StochKit2R" # tarball is invalid on server
|
||||||
"stpp" # requires spatstat
|
"stpp" # requires spatstat
|
||||||
"trip" # requires spatstat
|
"structSSI" # requires multtest
|
||||||
"pubmed_mineR" # requires SSOAP
|
"strum" # requires Rgraphviz
|
||||||
"dnet" # requires supraHex, graph, Rgraphviz, and Biobase
|
"superbiclust" # requires fabia
|
||||||
"plsRcox" # requires survcomp
|
"surveillance" # requires polyCub
|
||||||
"rsig" # requires survcomp
|
"swamp" # requires impute
|
||||||
"leapp" # requires sva
|
"sybilSBML" # requires libSBML
|
||||||
"ttScreening" # requires sva, and limma
|
|
||||||
"GOGANPA" # requires WGCNA
|
|
||||||
"nettools" # requires WGCNA
|
|
||||||
"rneos" # requires XMLRPC
|
|
||||||
"taxize" # requres bold
|
"taxize" # requres bold
|
||||||
"cudaBayesreg" # requres Rmath
|
"TcGSA" # requires multtest
|
||||||
"rsprng" # requres sprng
|
"topologyGSA" # requires gRbase
|
||||||
"evobiR" # requres taxiz
|
|
||||||
"bdvis" # requres taxize
|
|
||||||
"RNeXML" # requres taxize
|
|
||||||
"TR8" # requres taxize
|
"TR8" # requres taxize
|
||||||
"Actigraphy" # SDMTools.so: undefined symbol: X
|
"trip" # requires spatstat
|
||||||
"lefse" # SDMTools.so: undefined symbol: X
|
"ttScreening" # requires sva, and limma
|
||||||
"raincpc" # SDMTools.so: undefined symbol: X
|
"V8" # compilation error
|
||||||
"rainfreq" # SDMTools.so: undefined symbol: X
|
"vows" # requires rpanel
|
||||||
"MigClim" # SDMTools.So: Undefined Symbol: X
|
"WGCNA" # requires impute
|
||||||
"PatternClass" # SDMTools.So: Undefined Symbol: X
|
"wgsea" # requires snpStats
|
||||||
"jvmr" # tries to download files during its build
|
"WideLM" # depends on proprietary cudatoolkit
|
||||||
"h2o" # tries to download some h2o.jar during its build
|
"x_ent" # requires opencpu
|
||||||
|
"zoib" # tarball is invalid on server
|
||||||
];
|
];
|
||||||
|
|
||||||
otherOverrides = old: new: {
|
otherOverrides = old: new: {
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user