julia03: refactor and build with openblas
Compared to ATLAS, OpenBLAS offers better performance, faster builds, and dynamic architecture detection.
This commit is contained in:
Thomas Tuegel
parent
4f98287afa
commit
77a454b866
@ -1,26 +1,24 @@
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{ stdenv, fetchgit, gfortran, perl, m4, llvm, gmp, pcre, zlib
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, readline, fftwSinglePrec, fftw, libunwind, suitesparse, glpk, fetchurl
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, ncurses, libunistring, patchelf, openblas, liblapack
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, tcl, tk, xproto, libX11, git, mpfr, which, wget
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} :
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, readline, fftwSinglePrec, fftw, libunwind, suitesparse, glpk, fetchurl
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, ncurses, libunistring, patchelf, openblas
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, tcl, tk, xproto, libX11, git, mpfr, which
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}:
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assert stdenv.isLinux;
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with stdenv.lib;
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let
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realGcc = stdenv.cc.cc;
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in
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stdenv.mkDerivation rec {
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pname = "julia";
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version = "0.3.6";
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name = "${pname}-${version}";
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arch = head (splitString "-" stdenv.system);
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march =
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{
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"x86_64-linux" = "x86-64";
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"i686-linux" = "i686";
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}."${stdenv.system}" or (throw "unsupported system: ${stdenv.system}");
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dsfmt_ver = "2.2";
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grisu_ver = "1.1.1";
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openblas_ver = "v0.2.13";
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lapack_ver = "3.5.0";
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arpack_ver = "3.1.5";
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patchelf_ver = "0.8";
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pcre_ver = "8.36";
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utf8proc_ver = "1.1.6";
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dsfmt_src = fetchurl {
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@ -32,33 +30,26 @@ stdenv.mkDerivation rec {
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url = "http://double-conversion.googlecode.com/files/double-conversion-${grisu_ver}.tar.gz";
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md5 = "29b533ed4311161267bff1a9a97e2953";
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};
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openblas_src = fetchurl {
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url = "https://github.com/xianyi/OpenBLAS/tarball/${openblas_ver}";
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name = "openblas-${openblas_ver}.tar.gz";
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md5 = "74adf4c0d0d82bff4774be5bf2134183";
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};
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arpack_src = fetchurl rec {
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url = "https://github.com/opencollab/arpack-ng/archive/${arpack_ver}.tar.gz";
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md5 = "d84e1b6108d9ee67c0d21aba7099e953";
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name = "arpack-ng-${arpack_ver}.tar.gz";
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};
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lapack_src = fetchurl {
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url = "http://www.netlib.org/lapack/lapack-${lapack_ver}.tgz";
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name = "lapack-${lapack_ver}.tgz";
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md5 = "b1d3e3e425b2e44a06760ff173104bdf";
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};
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patchelf_src = fetchurl {
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url = "http://hydra.nixos.org/build/1524660/download/2/patchelf-${patchelf_ver}.tar.bz2";
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md5 = "5087261514b4b5814a39c3d3a36eb6ef";
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};
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pcre_src = fetchurl {
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url = "ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-${pcre_ver}.tar.bz2";
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md5 = "b767bc9af0c20bc9c1fe403b0d41ad97";
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};
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utf8proc_src = fetchurl {
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url = "http://www.public-software-group.org/pub/projects/utf8proc/v${utf8proc_ver}/utf8proc-v${utf8proc_ver}.tar.gz";
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md5 = "2462346301fac2994c34f5574d6c3ca7";
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};
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in
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stdenv.mkDerivation rec {
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pname = "julia";
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version = "0.3.6";
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name = "${pname}-${version}";
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extraSrcs = [ dsfmt_src grisu_src arpack_src utf8proc_src ];
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src = fetchgit {
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url = "git://github.com/JuliaLang/julia.git";
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@ -67,59 +58,81 @@ stdenv.mkDerivation rec {
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name = "julia-git-v${version}";
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};
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buildInputs = [ gfortran perl m4 gmp pcre llvm readline zlib
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fftw fftwSinglePrec libunwind suitesparse glpk ncurses libunistring patchelf
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openblas liblapack tcl tk xproto libX11 git mpfr which wget
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buildInputs =
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[
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gfortran perl m4 gmp pcre llvm readline zlib
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fftw fftwSinglePrec libunwind suitesparse glpk ncurses libunistring patchelf
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openblas tcl tk xproto libX11 git mpfr which
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];
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makeFlags =
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[
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"USE_SYSTEM_PATCHELF=1"
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"USE_SYSTEM_OPENBLAS=1"
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"USE_SYSTEM_BLAS=1"
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"USE_SYSTEM_LAPACK=1"
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"ARCH=${arch}"
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"MARCH=${march}"
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"JULIA_CPU_TARGET=${march}"
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"PREFIX=$(out)"
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"prefix=$(out)"
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"SHELL=${stdenv.shell}"
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];
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GLPK_PREFIX = "${glpk}/include";
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NIX_CFLAGS_COMPILE = [ "-fPIC" ];
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NIX_LDFLAGS =
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optionals
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(realGcc != null)
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[
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"-L${realGcc}/lib"
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"-L${realGcc}/lib64"
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"-lpcre" "-lm" "-lfftw3f" "-lfftw3" "-lglpk"
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"-lunistring" "-lz" "-lgmp" "-lmpfr" "-lopenblas"
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];
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postPatch = ''
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sed -e "s@/usr/local/lib@$out/lib@g" -i deps/Makefile
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sed -e "s@/usr/lib@$out/lib@g" -i deps/Makefile
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patchShebangs . contrib
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# ldconfig doesn't seem to ever work on NixOS; system-wide ldconfig cache
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# is probably not what we want anyway on non-NixOS
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sed -e "s@/sbin/ldconfig@true@" -i src/ccall.*
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'';
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configurePhase = ''
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for i in GMP LLVM PCRE READLINE FFTW LIBUNWIND SUITESPARSE GLPK ZLIB MPFR;
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do
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makeFlags="$makeFlags USE_SYSTEM_$i=1 "
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done
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makeFlags="$makeFlags JULIA_CPU_TARGET=core2";
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copy_kill_hash(){
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cp "$1" "$2/$(basename "$1" | sed -e 's/^[a-z0-9]*-//')"
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}
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for i in "${grisu_src}" "${dsfmt_src}" "${arpack_src}" "${patchelf_src}" \
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"${pcre_src}" "${utf8proc_src}" "${lapack_src}" "${openblas_src}"; do
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for i in $extraSrcs; do
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copy_kill_hash "$i" deps
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done
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${if realGcc ==null then "" else
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''export NIX_LDFLAGS="$NIX_LDFLAGS -L${realGcc}/lib -L${realGcc}/lib64 -lpcre -llapack -lm -lfftw3f -lfftw3 -lglpk -lunistring -lz -lgmp -lmpfr -lblas -lopenblas -L$out/lib"''}
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export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -fPIC "
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${if realGcc ==null then "" else ''export NIX_LDFLAGS="$NIX_LDFLAGS -L$out/lib"''}
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export LDFLAGS="-L${suitesparse}/lib -L$out/lib/julia -Wl,-rpath,$out/lib/julia"
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export GLPK_PREFIX="${glpk}/include"
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mkdir -p "$out/lib"
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sed -e "s@/usr/local/lib@$out/lib@g" -i deps/Makefile
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sed -e "s@/usr/lib@$out/lib@g" -i deps/Makefile
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export makeFlags="$makeFlags PREFIX=$out SHELL=${stdenv.shell} prefix=$out"
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export dontPatchELF=1
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$PWD/usr/lib:$PWD/usr/lib/julia"
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patchShebangs . contrib
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export PATH="$PATH:${stdenv.cc.libc}/sbin"
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# ldconfig doesn't seem to ever work on NixOS; system-wide ldconfig cache
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# is probably not what we want anyway on non-NixOS
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sed -e "s@/sbin/ldconfig@true@" -i src/ccall.*
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ln -s "${openblas}/lib/libopenblas.so" "$out/lib/libblas.so"
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'';
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preBuild = ''
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mkdir -p "$out/lib"
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ln -s "${openblas}/lib/libopenblas.so" "$out/lib/libblas.so"
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ln -s "${openblas}/lib/libopenblas.so" "$out/lib/liblapack.so"
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mkdir -p usr/lib
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echo "$out"
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mkdir -p "$out/lib"
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(
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@ -137,6 +150,7 @@ stdenv.mkDerivation rec {
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'';
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dontStrip = true;
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dontPatchELF = true;
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enableParallelBuilding = true;
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@ -147,8 +161,8 @@ stdenv.mkDerivation rec {
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description = "High-level performance-oriented dynamical language for technical computing";
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homepage = "http://julialang.org/";
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license = stdenv.lib.licenses.mit;
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maintainers = [ stdenv.lib.maintainers.raskin ];
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platforms = with stdenv.lib.platforms; linux;
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maintainers = with stdenv.lib.maintainers; [ raskin ttuegel ];
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platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
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broken = false;
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};
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}
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@ -3994,13 +3994,8 @@ let
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suitesparse = suitesparse_4_2;
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};
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julia03 = let
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liblapack = liblapack_3_5_0.override {shared = true;};
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in callPackage ../development/compilers/julia/0.3.nix {
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inherit liblapack;
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suitesparse = suitesparse_4_2.override {
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inherit liblapack;
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};
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julia03 = callPackage ../development/compilers/julia/0.3.nix {
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suitesparse = suitesparse_4_2;
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llvm = llvm_33;
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};
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julia = julia03;
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