diff --git a/doc/Makefile b/doc/Makefile index 91b62fe138bc..cd6d7eb8d1c8 100644 --- a/doc/Makefile +++ b/doc/Makefile @@ -21,7 +21,7 @@ fix-misc-xml: .PHONY: clean clean: - rm -f ${MD_TARGETS} .version manual-full.xml functions/library/locations.xml + rm -f ${MD_TARGETS} .version manual-full.xml functions/library/locations.xml functions/library/generated rm -rf ./out/ ./highlightjs .PHONY: validate @@ -71,16 +71,22 @@ highlightjs: cp -r "$$HIGHLIGHTJS/loader.js" highlightjs/ -manual-full.xml: ${MD_TARGETS} .version functions/library/locations.xml *.xml **/*.xml **/**/*.xml +manual-full.xml: ${MD_TARGETS} .version functions/library/locations.xml functions/library/generated *.xml **/*.xml **/**/*.xml xmllint --nonet --xinclude --noxincludenode manual.xml --output manual-full.xml .version: nix-instantiate --eval \ -E '(import ../lib).version' > .version +function_locations := $(shell nix-build --no-out-link ./lib-function-locations.nix) + functions/library/locations.xml: - nix-build ./lib-function-locations.nix \ - --out-link ./functions/library/locations.xml + ln -s $(function_locations) ./functions/library/locations.xml + +functions/library/generated: + nix-build ./lib-function-docs.nix \ + --arg locationsXml $(function_locations)\ + --out-link ./functions/library/generated %.section.xml: %.section.md pandoc $^ -w docbook+smart \ diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index dac1acfefb4c..cc121c15ac88 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -1962,6 +1962,11 @@ github = "ikervagyok"; name = "Balázs Lengyel"; }; + ilikeavocadoes = { + email = "ilikeavocadoes@hush.com"; + github = "ilikeavocadoes"; + name = "Lassi Haasio"; + }; illegalprime = { email = "themichaeleden@gmail.com"; github = "illegalprime"; @@ -4668,7 +4673,7 @@ name = "Thomas Bereknyei"; }; tomsmeets = { - email = "tom@tsmeets.nl"; + email = "tom.tsmeets@gmail.com"; github = "tomsmeets"; name = "Tom Smeets"; }; diff --git a/maintainers/scripts/luarocks-packages.csv b/maintainers/scripts/luarocks-packages.csv index e6817a060560..1144bc723254 100644 --- a/maintainers/scripts/luarocks-packages.csv +++ b/maintainers/scripts/luarocks-packages.csv @@ -1,7 +1,12 @@ ansicolors, argparse, +basexx, +cqueues dkjson +fifo inspect +lgi +lpeg_patterns lrexlib-gnu, lrexlib-posix, ltermbox, diff --git a/nixos/maintainers/scripts/openstack/nova-image.nix b/nixos/maintainers/scripts/openstack/nova-image.nix deleted file mode 100644 index b6f3a5b15200..000000000000 --- a/nixos/maintainers/scripts/openstack/nova-image.nix +++ /dev/null @@ -1,26 +0,0 @@ -# nix-build '' -A config.system.build.novaImage --arg configuration "{ imports = [ ./nixos/maintainers/scripts/openstack/nova-image.nix ]; }" - -{ config, lib, pkgs, ... }: - -with lib; - -{ - imports = - [ ../../../modules/installer/cd-dvd/channel.nix - ../../../modules/virtualisation/nova-config.nix - ]; - - system.build.novaImage = import ../../../lib/make-disk-image.nix { - inherit lib config; - pkgs = import ../../../.. { inherit (pkgs) system; }; # ensure we use the regular qemu-kvm package - diskSize = 8192; - format = "qcow2"; - configFile = pkgs.writeText "configuration.nix" - '' - { - imports = [ ]; - } - ''; - }; - -} diff --git a/nixos/maintainers/scripts/openstack/openstack-image.nix b/nixos/maintainers/scripts/openstack/openstack-image.nix new file mode 100644 index 000000000000..4c464f43f61d --- /dev/null +++ b/nixos/maintainers/scripts/openstack/openstack-image.nix @@ -0,0 +1,26 @@ +# nix-build '' -A config.system.build.openstackImage --arg configuration "{ imports = [ ./nixos/maintainers/scripts/openstack/openstack-image.nix ]; }" + +{ config, lib, pkgs, ... }: + +with lib; + +{ + imports = + [ ../../../modules/installer/cd-dvd/channel.nix + ../../../modules/virtualisation/openstack-config.nix + ]; + + system.build.openstackImage = import ../../../lib/make-disk-image.nix { + inherit lib config; + pkgs = import ../../../.. { inherit (pkgs) system; }; # ensure we use the regular qemu-kvm package + diskSize = 8192; + format = "qcow2"; + configFile = pkgs.writeText "configuration.nix" + '' + { + imports = [ ]; + } + ''; + }; + +} diff --git a/nixos/modules/installer/tools/nixos-generate-config.pl b/nixos/modules/installer/tools/nixos-generate-config.pl index 3bcf90258d79..686204ee0342 100644 --- a/nixos/modules/installer/tools/nixos-generate-config.pl +++ b/nixos/modules/installer/tools/nixos-generate-config.pl @@ -641,7 +641,6 @@ $bootLoaderConfig # Define a user account. Don't forget to set a password with ‘passwd’. # users.users.jane = { # isNormalUser = true; - # uid = 1000; # extraGroups = [ "wheel" ]; # Enable ‘sudo’ for the user. # }; diff --git a/nixos/modules/services/misc/airsonic.nix b/nixos/modules/services/misc/airsonic.nix index 01d7b3cf6b9d..8b2ec82c7705 100644 --- a/nixos/modules/services/misc/airsonic.nix +++ b/nixos/modules/services/misc/airsonic.nix @@ -25,6 +25,14 @@ in { ''; }; + virtualHost = mkOption { + type = types.nullOr types.str; + default = null; + description = '' + Name of the nginx virtualhost to use and setup. If null, do not setup any virtualhost. + ''; + }; + listenAddress = mkOption { type = types.string; default = "127.0.0.1"; @@ -116,6 +124,8 @@ in { -Dserver.port=${toString cfg.port} \ -Dairsonic.contextPath=${cfg.contextPath} \ -Djava.awt.headless=true \ + ${optionalString (cfg.virtualHost != null) + "-Dserver.use-forward-headers=true"} \ ${toString cfg.jvmOptions} \ -verbose:gc \ -jar ${pkgs.airsonic}/webapps/airsonic.war @@ -126,6 +136,13 @@ in { }; }; + services.nginx = mkIf (cfg.virtualHost != null) { + enable = true; + virtualHosts."${cfg.virtualHost}" = { + locations."${cfg.contextPath}".proxyPass = "http://${cfg.listenAddress}:${toString cfg.port}"; + }; + }; + users.users.airsonic = { description = "Airsonic service user"; name = cfg.user; diff --git a/nixos/modules/services/misc/plex.nix b/nixos/modules/services/misc/plex.nix index e4810ce9f876..b06c1c4bbc68 100644 --- a/nixos/modules/services/misc/plex.nix +++ b/nixos/modules/services/misc/plex.nix @@ -145,6 +145,7 @@ in PLEX_MEDIA_SERVER_HOME="${cfg.package}/usr/lib/plexmediaserver"; PLEX_MEDIA_SERVER_MAX_PLUGIN_PROCS="6"; PLEX_MEDIA_SERVER_TMPDIR="/tmp"; + PLEX_MEDIA_SERVER_USE_SYSLOG="true"; LD_LIBRARY_PATH="/run/opengl-driver/lib:${cfg.package}/usr/lib/plexmediaserver"; LC_ALL="en_US.UTF-8"; LANG="en_US.UTF-8"; diff --git a/nixos/modules/services/networking/teamspeak3.nix b/nixos/modules/services/networking/teamspeak3.nix index 410d650b1f64..9ea9c83e37cd 100644 --- a/nixos/modules/services/networking/teamspeak3.nix +++ b/nixos/modules/services/networking/teamspeak3.nix @@ -41,8 +41,9 @@ in }; voiceIP = mkOption { - type = types.str; - default = "0.0.0.0"; + type = types.nullOr types.str; + default = null; + example = "0.0.0.0"; description = '' IP on which the server instance will listen for incoming voice connections. Defaults to any IP. ''; @@ -57,8 +58,9 @@ in }; fileTransferIP = mkOption { - type = types.str; - default = "0.0.0.0"; + type = types.nullOr types.str; + default = null; + example = "0.0.0.0"; description = '' IP on which the server instance will listen for incoming file transfer connections. Defaults to any IP. ''; @@ -73,8 +75,9 @@ in }; queryIP = mkOption { - type = types.str; - default = "0.0.0.0"; + type = types.nullOr types.str; + default = null; + example = "0.0.0.0"; description = '' IP on which the server instance will listen for incoming ServerQuery connections. Defaults to any IP. ''; @@ -122,9 +125,12 @@ in ExecStart = '' ${ts3}/bin/ts3server \ dbsqlpath=${ts3}/lib/teamspeak/sql/ logpath=${cfg.logPath} \ - voice_ip=${cfg.voiceIP} default_voice_port=${toString cfg.defaultVoicePort} \ - filetransfer_ip=${cfg.fileTransferIP} filetransfer_port=${toString cfg.fileTransferPort} \ - query_ip=${cfg.queryIP} query_port=${toString cfg.queryPort} license_accepted=1 + ${optionalString (cfg.voiceIP != null) "voice_ip=${cfg.voiceIP}"} \ + default_voice_port=${toString cfg.defaultVoicePort} \ + ${optionalString (cfg.fileTransferIP != null) "filetransfer_ip=${cfg.fileTransferIP}"} \ + filetransfer_port=${toString cfg.fileTransferPort} \ + ${optionalString (cfg.queryIP != null) "query_ip=${cfg.queryIP}"} \ + query_port=${toString cfg.queryPort} license_accepted=1 ''; WorkingDirectory = cfg.dataDir; User = user; diff --git a/nixos/modules/services/web-apps/atlassian/confluence.nix b/nixos/modules/services/web-apps/atlassian/confluence.nix index b71887fcc6ee..15744d90cc79 100644 --- a/nixos/modules/services/web-apps/atlassian/confluence.nix +++ b/nixos/modules/services/web-apps/atlassian/confluence.nix @@ -6,7 +6,7 @@ let cfg = config.services.confluence; - pkg = pkgs.atlassian-confluence.override (optionalAttrs cfg.sso.enable { + pkg = cfg.package.override (optionalAttrs cfg.sso.enable { enableSSO = cfg.sso.enable; crowdProperties = '' application.name ${cfg.sso.applicationName} @@ -125,7 +125,12 @@ in }; }; - + package = mkOption { + type = types.package; + default = pkgs.atlassian-confluence; + defaultText = "pkgs.atlassian-confluence"; + description = "Atlassian Confluence package to use."; + }; jrePackage = mkOption { type = types.package; diff --git a/nixos/modules/services/web-apps/atlassian/crowd.nix b/nixos/modules/services/web-apps/atlassian/crowd.nix index 9f48d1e16a44..c144b21bdaf2 100644 --- a/nixos/modules/services/web-apps/atlassian/crowd.nix +++ b/nixos/modules/services/web-apps/atlassian/crowd.nix @@ -6,7 +6,7 @@ let cfg = config.services.crowd; - pkg = pkgs.atlassian-crowd.override { + pkg = cfg.package.override { home = cfg.home; port = cfg.listenPort; openidPassword = cfg.openidPassword; @@ -93,6 +93,13 @@ in }; }; + package = mkOption { + type = types.package; + default = pkgs.atlassian-crowd; + defaultText = "pkgs.atlassian-crowd"; + description = "Atlassian Crowd package to use."; + }; + jrePackage = mkOption { type = types.package; default = pkgs.oraclejre8; diff --git a/nixos/modules/services/web-apps/atlassian/jira.nix b/nixos/modules/services/web-apps/atlassian/jira.nix index dba970c612bc..0b3a5722d6c8 100644 --- a/nixos/modules/services/web-apps/atlassian/jira.nix +++ b/nixos/modules/services/web-apps/atlassian/jira.nix @@ -6,7 +6,7 @@ let cfg = config.services.jira; - pkg = pkgs.atlassian-jira.override (optionalAttrs cfg.sso.enable { + pkg = cfg.package.override (optionalAttrs cfg.sso.enable { enableSSO = cfg.sso.enable; crowdProperties = '' application.name ${cfg.sso.applicationName} @@ -131,6 +131,13 @@ in }; }; + package = mkOption { + type = types.package; + default = pkgs.atlassian-jira; + defaultText = "pkgs.atlassian-jira"; + description = "Atlassian JIRA package to use."; + }; + jrePackage = mkOption { type = types.package; default = pkgs.oraclejre8; diff --git a/nixos/modules/services/web-apps/tt-rss.nix b/nixos/modules/services/web-apps/tt-rss.nix index 90b35d19ea11..e043ce4b5812 100644 --- a/nixos/modules/services/web-apps/tt-rss.nix +++ b/nixos/modules/services/web-apps/tt-rss.nix @@ -34,7 +34,14 @@ let define('DB_HOST', '${optionalString (cfg.database.host != null) cfg.database.host}'); define('DB_USER', '${cfg.database.user}'); define('DB_NAME', '${cfg.database.name}'); - define('DB_PASS', '${optionalString (cfg.database.password != null) (escape ["'" "\\"] cfg.database.password)}'); + define('DB_PASS', ${ + if (cfg.database.password != null) then + "'${(escape ["'" "\\"] cfg.database.password)}'" + else if (cfg.database.passwordFile != null) then + "file_get_contents('${cfg.database.passwordFile}')" + else + "" + }); define('DB_PORT', '${toString dbPort}'); define('AUTH_AUTO_CREATE', ${boolToString cfg.auth.autoCreate}); @@ -168,6 +175,14 @@ let ''; }; + passwordFile = mkOption { + type = types.nullOr types.str; + default = null; + description = '' + The database user's password. + ''; + }; + port = mkOption { type = types.nullOr types.int; default = null; @@ -479,21 +494,30 @@ let config = mkIf cfg.enable { - services.phpfpm.poolConfigs = mkIf (cfg.pool == "${poolName}") { - "${poolName}" = '' - listen = "${phpfpmSocketName}"; - listen.owner = nginx - listen.group = nginx - listen.mode = 0600 - user = ${cfg.user} - pm = dynamic - pm.max_children = 75 - pm.start_servers = 10 - pm.min_spare_servers = 5 - pm.max_spare_servers = 20 - pm.max_requests = 500 - catch_workers_output = 1 - ''; + assertions = [ + { + assertion = cfg.database.password != null -> cfg.database.passwordFile == null; + message = "Cannot set both password and passwordFile"; + } + ]; + + services.phpfpm.pools = mkIf (cfg.pool == "${poolName}") { + "${poolName}" = { + listen = "/var/run/phpfpm/${poolName}.sock"; + extraConfig = '' + listen.owner = nginx + listen.group = nginx + listen.mode = 0600 + user = ${cfg.user} + pm = dynamic + pm.max_children = 75 + pm.start_servers = 10 + pm.min_spare_servers = 5 + pm.max_spare_servers = 20 + pm.max_requests = 500 + catch_workers_output = 1 + ''; + }; }; # NOTE: No configuration is done if not using virtual host @@ -510,7 +534,7 @@ let locations."~ \.php$" = { extraConfig = '' fastcgi_split_path_info ^(.+\.php)(/.+)$; - fastcgi_pass unix:${phpfpmSocketName}; + fastcgi_pass unix:${config.services.phpfpm.pools.${cfg.pool}.listen}; fastcgi_index index.php; ''; }; @@ -528,6 +552,7 @@ let callSql = e: if cfg.database.type == "pgsql" then '' ${optionalString (cfg.database.password != null) "PGPASSWORD=${cfg.database.password}"} \ + ${optionalString (cfg.database.passwordFile != null) "PGPASSWORD=$(cat ${cfg.database.passwordFile}"}) \ ${pkgs.sudo}/bin/sudo -u ${cfg.user} ${config.services.postgresql.package}/bin/psql \ -U ${cfg.database.user} \ ${optionalString (cfg.database.host != null) "-h ${cfg.database.host} --port ${toString dbPort}"} \ diff --git a/nixos/modules/services/x11/xautolock.nix b/nixos/modules/services/x11/xautolock.nix index a614559970e9..cbe000058dc6 100644 --- a/nixos/modules/services/x11/xautolock.nix +++ b/nixos/modules/services/x11/xautolock.nix @@ -21,7 +21,7 @@ in type = types.int; description = '' - Idle time to wait until xautolock locks the computer. + Idle time (in minutes) to wait until xautolock locks the computer. ''; }; diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index f783daba902a..58812bf33d9b 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -321,7 +321,9 @@ let in concatMapStrings (n: let s = optionalString (env."${n}" != null) "Environment=${builtins.toJSON "${n}=${env.${n}}"}\n"; - in if stringLength s >= 2048 then throw "The value of the environment variable ‘${n}’ in systemd service ‘${name}.service’ is too long." else s) (attrNames env)} + # systemd max line length is now 1MiB + # https://github.com/systemd/systemd/commit/e6dde451a51dc5aaa7f4d98d39b8fe735f73d2af + in if stringLength s >= 1048576 then throw "The value of the environment variable ‘${n}’ in systemd service ‘${name}.service’ is too long." else s) (attrNames env)} ${if def.reloadIfChanged then '' X-ReloadIfChanged=true '' else if !def.restartIfChanged then '' diff --git a/nixos/modules/virtualisation/amazon-image.nix b/nixos/modules/virtualisation/amazon-image.nix index 9015200beead..6f4f99caa6f1 100644 --- a/nixos/modules/virtualisation/amazon-image.nix +++ b/nixos/modules/virtualisation/amazon-image.nix @@ -8,7 +8,13 @@ with lib; -let cfg = config.ec2; in +let + cfg = config.ec2; + metadataFetcher = import ./ec2-metadata-fetcher.nix { + targetRoot = "$targetRoot/"; + wgetExtraOptions = "-q"; + }; +in { imports = [ ../profiles/headless.nix ./ec2-data.nix ./amazon-init.nix ]; @@ -61,26 +67,7 @@ let cfg = config.ec2; in # Nix operations. boot.initrd.postMountCommands = '' - metaDir=$targetRoot/etc/ec2-metadata - mkdir -m 0755 -p "$metaDir" - - echo "getting EC2 instance metadata..." - - if ! [ -e "$metaDir/ami-manifest-path" ]; then - wget -q -O "$metaDir/ami-manifest-path" http://169.254.169.254/1.0/meta-data/ami-manifest-path - fi - - if ! [ -e "$metaDir/user-data" ]; then - wget -q -O "$metaDir/user-data" http://169.254.169.254/1.0/user-data && chmod 600 "$metaDir/user-data" - fi - - if ! [ -e "$metaDir/hostname" ]; then - wget -q -O "$metaDir/hostname" http://169.254.169.254/1.0/meta-data/hostname - fi - - if ! [ -e "$metaDir/public-keys-0-openssh-key" ]; then - wget -q -O "$metaDir/public-keys-0-openssh-key" http://169.254.169.254/1.0/meta-data/public-keys/0/openssh-key - fi + ${metadataFetcher} diskNr=0 diskForUnionfs= diff --git a/nixos/modules/virtualisation/docker-preloader.nix b/nixos/modules/virtualisation/docker-preloader.nix index faa94f53d98f..6ab83058dee1 100644 --- a/nixos/modules/virtualisation/docker-preloader.nix +++ b/nixos/modules/virtualisation/docker-preloader.nix @@ -78,12 +78,11 @@ in }; }; - config = { + config = mkIf (cfg.dockerPreloader.images != []) { assertions = [{ # If docker.storageDriver is null, Docker choose the storage # driver. So, in this case, we cannot be sure overlay2 is used. - assertion = cfg.dockerPreloader.images == [] - || cfg.docker.storageDriver == "overlay2" + assertion = cfg.docker.storageDriver == "overlay2" || cfg.docker.storageDriver == "overlay" || cfg.docker.storageDriver == null; message = "The Docker image Preloader only works with overlay2 storage driver!"; diff --git a/nixos/modules/virtualisation/ec2-metadata-fetcher.nix b/nixos/modules/virtualisation/ec2-metadata-fetcher.nix new file mode 100644 index 000000000000..b531787c31a2 --- /dev/null +++ b/nixos/modules/virtualisation/ec2-metadata-fetcher.nix @@ -0,0 +1,23 @@ +{ targetRoot, wgetExtraOptions }: +'' + metaDir=${targetRoot}etc/ec2-metadata + mkdir -m 0755 -p "$metaDir" + + echo "getting EC2 instance metadata..." + + if ! [ -e "$metaDir/ami-manifest-path" ]; then + wget ${wgetExtraOptions} -O "$metaDir/ami-manifest-path" http://169.254.169.254/1.0/meta-data/ami-manifest-path + fi + + if ! [ -e "$metaDir/user-data" ]; then + wget ${wgetExtraOptions} -O "$metaDir/user-data" http://169.254.169.254/1.0/user-data && chmod 600 "$metaDir/user-data" + fi + + if ! [ -e "$metaDir/hostname" ]; then + wget ${wgetExtraOptions} -O "$metaDir/hostname" http://169.254.169.254/1.0/meta-data/hostname + fi + + if ! [ -e "$metaDir/public-keys-0-openssh-key" ]; then + wget ${wgetExtraOptions} -O "$metaDir/public-keys-0-openssh-key" http://169.254.169.254/1.0/meta-data/public-keys/0/openssh-key + fi +'' diff --git a/nixos/modules/virtualisation/nova-config.nix b/nixos/modules/virtualisation/nova-config.nix deleted file mode 100644 index cecf2a3f144c..000000000000 --- a/nixos/modules/virtualisation/nova-config.nix +++ /dev/null @@ -1,60 +0,0 @@ -{ lib, ... }: - -with lib; - -{ - imports = [ - ../profiles/qemu-guest.nix - ../profiles/headless.nix - ]; - - config = { - fileSystems."/" = { - device = "/dev/disk/by-label/nixos"; - autoResize = true; - }; - - boot.growPartition = true; - boot.kernelParams = [ "console=ttyS0" ]; - boot.loader.grub.device = "/dev/vda"; - boot.loader.timeout = 0; - - # Allow root logins - services.openssh = { - enable = true; - permitRootLogin = "prohibit-password"; - passwordAuthentication = mkDefault false; - }; - - services.cloud-init.enable = true; - - # Put /tmp and /var on /ephemeral0, which has a lot more space. - # Unfortunately we can't do this with the `fileSystems' option - # because it has no support for creating the source of a bind - # mount. Also, "move" /nix to /ephemeral0 by layering a unionfs-fuse - # mount on top of it so we have a lot more space for Nix operations. - - /* - boot.initrd.postMountCommands = - '' - mkdir -m 1777 -p $targetRoot/ephemeral0/tmp - mkdir -m 1777 -p $targetRoot/tmp - mount --bind $targetRoot/ephemeral0/tmp $targetRoot/tmp - - mkdir -m 755 -p $targetRoot/ephemeral0/var - mkdir -m 755 -p $targetRoot/var - mount --bind $targetRoot/ephemeral0/var $targetRoot/var - - mkdir -p /unionfs-chroot/ro-nix - mount --rbind $targetRoot/nix /unionfs-chroot/ro-nix - - mkdir -p /unionfs-chroot/rw-nix - mkdir -m 755 -p $targetRoot/ephemeral0/nix - mount --rbind $targetRoot/ephemeral0/nix /unionfs-chroot/rw-nix - unionfs -o allow_other,cow,nonempty,chroot=/unionfs-chroot,max_files=32768 /rw-nix=RW:/ro-nix=RO $targetRoot/nix - ''; - - boot.initrd.supportedFilesystems = [ "unionfs-fuse" ]; - */ - }; -} diff --git a/nixos/modules/virtualisation/openstack-config.nix b/nixos/modules/virtualisation/openstack-config.nix new file mode 100644 index 000000000000..d5e862da0ea4 --- /dev/null +++ b/nixos/modules/virtualisation/openstack-config.nix @@ -0,0 +1,57 @@ +{ pkgs, lib, ... }: + +with lib; + +let + metadataFetcher = import ./ec2-metadata-fetcher.nix { + targetRoot = "/"; + wgetExtraOptions = "--retry-connrefused"; + }; +in +{ + imports = [ + ../profiles/qemu-guest.nix + ../profiles/headless.nix + # The Openstack Metadata service exposes data on an EC2 API also. + ./ec2-data.nix + ./amazon-init.nix + ]; + + config = { + fileSystems."/" = { + device = "/dev/disk/by-label/nixos"; + autoResize = true; + }; + + boot.growPartition = true; + boot.kernelParams = [ "console=ttyS0" ]; + boot.loader.grub.device = "/dev/vda"; + boot.loader.timeout = 0; + + # Allow root logins + services.openssh = { + enable = true; + permitRootLogin = "prohibit-password"; + passwordAuthentication = mkDefault false; + }; + + # Force getting the hostname from Openstack metadata. + networking.hostName = mkDefault ""; + + systemd.services.openstack-init = { + path = [ pkgs.wget ]; + description = "Fetch Metadata on startup"; + wantedBy = [ "multi-user.target" ]; + before = [ "apply-ec2-data.service" "amazon-init.service"]; + wants = [ "network-online.target" ]; + after = [ "network-online.target" ]; + script = metadataFetcher; + restartIfChanged = false; + unitConfig.X-StopOnRemoval = false; + serviceConfig = { + Type = "oneshot"; + RemainAfterExit = true; + }; + }; + }; +} diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index fb68159d6677..fe4ca5772c6d 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -163,6 +163,9 @@ in openldap = handleTest ./openldap.nix {}; opensmtpd = handleTest ./opensmtpd.nix {}; openssh = handleTest ./openssh.nix {}; + # openstack-image-userdata doesn't work in a sandbox as the simulated openstack instance needs network access + #openstack-image-userdata = (handleTestOn ["x86_64-linux"] ./openstack-image.nix {}).userdata or {}; + openstack-image-metadata = (handleTestOn ["x86_64-linux"] ./openstack-image.nix {}).metadata or {}; osquery = handleTest ./osquery.nix {}; osrm-backend = handleTest ./osrm-backend.nix {}; ostree = handleTest ./ostree.nix {}; diff --git a/nixos/tests/common/ec2.nix b/nixos/tests/common/ec2.nix new file mode 100644 index 000000000000..1e69b63191a7 --- /dev/null +++ b/nixos/tests/common/ec2.nix @@ -0,0 +1,49 @@ +{ pkgs, makeTest }: + +with pkgs.lib; + +{ + makeEc2Test = { name, image, userData, script, hostname ? "ec2-instance", sshPublicKey ? null }: + let + metaData = pkgs.stdenv.mkDerivation { + name = "metadata"; + buildCommand = '' + mkdir -p $out/1.0/meta-data + ln -s ${pkgs.writeText "userData" userData} $out/1.0/user-data + echo "${hostname}" > $out/1.0/meta-data/hostname + echo "(unknown)" > $out/1.0/meta-data/ami-manifest-path + '' + optionalString (sshPublicKey != null) '' + mkdir -p $out/1.0/meta-data/public-keys/0 + ln -s ${pkgs.writeText "sshPublicKey" sshPublicKey} $out/1.0/meta-data/public-keys/0/openssh-key + ''; + }; + in makeTest { + name = "ec2-" + name; + nodes = {}; + testScript = + '' + my $imageDir = ($ENV{'TMPDIR'} // "/tmp") . "/vm-state-machine"; + mkdir $imageDir, 0700; + my $diskImage = "$imageDir/machine.qcow2"; + system("qemu-img create -f qcow2 -o backing_file=${image}/nixos.qcow2 $diskImage") == 0 or die; + system("qemu-img resize $diskImage 10G") == 0 or die; + + # Note: we use net=169.0.0.0/8 rather than + # net=169.254.0.0/16 to prevent dhcpcd from getting horribly + # confused. (It would get a DHCP lease in the 169.254.* + # range, which it would then configure and prompty delete + # again when it deletes link-local addresses.) Ideally we'd + # turn off the DHCP server, but qemu does not have an option + # to do that. + my $startCommand = "qemu-kvm -m 768"; + $startCommand .= " -device virtio-net-pci,netdev=vlan0"; + $startCommand .= " -netdev 'user,id=vlan0,net=169.0.0.0/8,guestfwd=tcp:169.254.169.254:80-cmd:${pkgs.micro-httpd}/bin/micro_httpd ${metaData}'"; + $startCommand .= " -drive file=$diskImage,if=virtio,werror=report"; + $startCommand .= " \$QEMU_OPTS"; + + my $machine = createMachine({ startCommand => $startCommand }); + + ${script} + ''; + }; +} diff --git a/nixos/tests/ec2.nix b/nixos/tests/ec2.nix index ed6bf7da988c..384fce67c227 100644 --- a/nixos/tests/ec2.nix +++ b/nixos/tests/ec2.nix @@ -6,6 +6,8 @@ with import ../lib/testing.nix { inherit system pkgs; }; with pkgs.lib; +with import common/ec2.nix { inherit makeTest pkgs; }; + let image = (import ../lib/eval-config.nix { @@ -39,65 +41,14 @@ let ]; }).config.system.build.amazonImage; - makeEc2Test = { name, userData, script, hostname ? "ec2-instance", sshPublicKey ? null }: - let - metaData = pkgs.stdenv.mkDerivation { - name = "metadata"; - buildCommand = '' - mkdir -p $out/1.0/meta-data - ln -s ${pkgs.writeText "userData" userData} $out/1.0/user-data - echo "${hostname}" > $out/1.0/meta-data/hostname - echo "(unknown)" > $out/1.0/meta-data/ami-manifest-path - '' + optionalString (sshPublicKey != null) '' - mkdir -p $out/1.0/meta-data/public-keys/0 - ln -s ${pkgs.writeText "sshPublicKey" sshPublicKey} $out/1.0/meta-data/public-keys/0/openssh-key - ''; - }; - in makeTest { - name = "ec2-" + name; - nodes = {}; - testScript = - '' - my $imageDir = ($ENV{'TMPDIR'} // "/tmp") . "/vm-state-machine"; - mkdir $imageDir, 0700; - my $diskImage = "$imageDir/machine.qcow2"; - system("qemu-img create -f qcow2 -o backing_file=${image}/nixos.qcow2 $diskImage") == 0 or die; - system("qemu-img resize $diskImage 10G") == 0 or die; - - # Note: we use net=169.0.0.0/8 rather than - # net=169.254.0.0/16 to prevent dhcpcd from getting horribly - # confused. (It would get a DHCP lease in the 169.254.* - # range, which it would then configure and prompty delete - # again when it deletes link-local addresses.) Ideally we'd - # turn off the DHCP server, but qemu does not have an option - # to do that. - my $startCommand = "qemu-kvm -m 768"; - $startCommand .= " -device virtio-net-pci,netdev=vlan0"; - $startCommand .= " -netdev 'user,id=vlan0,net=169.0.0.0/8,guestfwd=tcp:169.254.169.254:80-cmd:${pkgs.micro-httpd}/bin/micro_httpd ${metaData}'"; - $startCommand .= " -drive file=$diskImage,if=virtio,werror=report"; - $startCommand .= " \$QEMU_OPTS"; - - my $machine = createMachine({ startCommand => $startCommand }); - - ${script} - ''; - }; - - snakeOilPrivateKey = '' - -----BEGIN OPENSSH PRIVATE KEY----- - b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW - QyNTUxOQAAACDEPmwZv5dDPrMUaq0dDP+6eBTTe+QNrz14KBEIdhHd1QAAAJDufJ4S7nye - EgAAAAtzc2gtZWQyNTUxOQAAACDEPmwZv5dDPrMUaq0dDP+6eBTTe+QNrz14KBEIdhHd1Q - AAAECgwbDlYATM5/jypuptb0GF/+zWZcJfoVIFBG3LQeRyGsQ+bBm/l0M+sxRqrR0M/7p4 - FNN75A2vPXgoEQh2Ed3VAAAADEVDMiB0ZXN0IGtleQE= - -----END OPENSSH PRIVATE KEY----- - ''; - - snakeOilPublicKey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIMQ+bBm/l0M+sxRqrR0M/7p4FNN75A2vPXgoEQh2Ed3V EC2 test key"; + sshKeys = import ./ssh-keys.nix pkgs; + snakeOilPrivateKey = sshKeys.snakeOilPrivateKey.text; + snakeOilPublicKey = sshKeys.snakeOilPublicKey; in { boot-ec2-nixops = makeEc2Test { name = "nixops-userdata"; + inherit image; sshPublicKey = snakeOilPublicKey; # That's right folks! My user's key is also the host key! userData = '' @@ -142,6 +93,7 @@ in { boot-ec2-config = makeEc2Test { name = "config-userdata"; + inherit image; sshPublicKey = snakeOilPublicKey; # ### http://nixos.org/channels/nixos-unstable nixos diff --git a/nixos/tests/openstack-image.nix b/nixos/tests/openstack-image.nix new file mode 100644 index 000000000000..d0225016ab76 --- /dev/null +++ b/nixos/tests/openstack-image.nix @@ -0,0 +1,88 @@ +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing.nix { inherit system pkgs; }; +with pkgs.lib; + +with import common/ec2.nix { inherit makeTest pkgs; }; + +let + image = + (import ../lib/eval-config.nix { + inherit system; + modules = [ + ../maintainers/scripts/openstack/openstack-image.nix + ../modules/testing/test-instrumentation.nix + ../modules/profiles/qemu-guest.nix + ]; + }).config.system.build.openstackImage; + + sshKeys = import ./ssh-keys.nix pkgs; + snakeOilPrivateKey = sshKeys.snakeOilPrivateKey.text; + snakeOilPublicKey = sshKeys.snakeOilPublicKey; + +in { + metadata = makeEc2Test { + name = "openstack-ec2-metadata"; + inherit image; + sshPublicKey = snakeOilPublicKey; + userData = '' + SSH_HOST_ED25519_KEY_PUB:${snakeOilPublicKey} + SSH_HOST_ED25519_KEY:${replaceStrings ["\n"] ["|"] snakeOilPrivateKey} + ''; + script = '' + $machine->start; + $machine->waitForFile("/etc/ec2-metadata/user-data"); + $machine->waitForUnit("sshd.service"); + + $machine->succeed("grep unknown /etc/ec2-metadata/ami-manifest-path"); + + # We have no keys configured on the client side yet, so this should fail + $machine->fail("ssh -o BatchMode=yes localhost exit"); + + # Let's install our client private key + $machine->succeed("mkdir -p ~/.ssh"); + + $machine->succeed("echo '${snakeOilPrivateKey}' > ~/.ssh/id_ed25519"); + $machine->succeed("chmod 600 ~/.ssh/id_ed25519"); + + # We haven't configured the host key yet, so this should still fail + $machine->fail("ssh -o BatchMode=yes localhost exit"); + + # Add the host key; ssh should finally succeed + $machine->succeed("echo localhost,127.0.0.1 ${snakeOilPublicKey} > ~/.ssh/known_hosts"); + $machine->succeed("ssh -o BatchMode=yes localhost exit"); + + # Just to make sure resizing is idempotent. + $machine->shutdown; + $machine->start; + $machine->waitForFile("/etc/ec2-metadata/user-data"); + ''; + }; + + userdata = makeEc2Test { + name = "openstack-ec2-metadata"; + inherit image; + sshPublicKey = snakeOilPublicKey; + userData = '' + { pkgs, ... }: + { + imports = [ + + + + ]; + environment.etc.testFile = { + text = "whoa"; + }; + } + ''; + script = '' + $machine->start; + $machine->waitForFile("/etc/testFile"); + $machine->succeed("cat /etc/testFile | grep -q 'whoa'"); + ''; + }; +} diff --git a/pkgs/applications/audio/adlplug/default.nix b/pkgs/applications/audio/adlplug/default.nix new file mode 100644 index 000000000000..35c7d316dd16 --- /dev/null +++ b/pkgs/applications/audio/adlplug/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchFromGitHub, cmake, pkgconfig, libjack2, alsaLib +, freetype, libX11, libXrandr, libXinerama, libXext, libXcursor +, adlplugChip ? "-DADLplug_CHIP=OPL3" +, pname ? "ADLplug" }: + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + version = "v1.0.0-beta.5"; + + src = fetchFromGitHub { + owner = "jpcima"; + repo = "ADLplug"; + rev = version; + sha256 = "1f8v61nv33xwpzmmk38dkr3fvm2j2xf0a74agxnl9p1yvy3a9w3s"; + fetchSubmodules = true; + }; + + cmakeFlags = [ adlplugChip ]; + + buildInputs = [ + libjack2 alsaLib freetype libX11 libXrandr libXinerama libXext + libXcursor + ]; + nativeBuildInputs = [ cmake pkgconfig ]; + + meta = with stdenv.lib; { + description = "Synthesizer plugin for ADLMIDI and OPNMIDI (VST/LV2)"; + homepage = src.meta.homepage; + license = licenses.boost; + platforms = platforms.linux; + maintainers = with maintainers; [ gnidorah ]; + }; +} diff --git a/pkgs/applications/editors/bvi/default.nix b/pkgs/applications/editors/bvi/default.nix index f3f44f769a99..f5e14ff1e096 100644 --- a/pkgs/applications/editors/bvi/default.nix +++ b/pkgs/applications/editors/bvi/default.nix @@ -16,6 +16,6 @@ stdenv.mkDerivation rec { homepage = http://bvi.sourceforge.net/download.html; license = licenses.gpl2; maintainers = with maintainers; [ pSub ]; - platforms = platforms.linux; + platforms = with platforms; linux ++ darwin; }; } diff --git a/pkgs/applications/editors/neovim/neovim-remote.nix b/pkgs/applications/editors/neovim/neovim-remote.nix index 1444d53da077..cda45c2c739d 100644 --- a/pkgs/applications/editors/neovim/neovim-remote.nix +++ b/pkgs/applications/editors/neovim/neovim-remote.nix @@ -2,7 +2,7 @@ with stdenv.lib; -pythonPackages.buildPythonPackage rec { +pythonPackages.buildPythonApplication rec { pname = "neovim-remote"; version = "2.1.4"; disabled = !pythonPackages.isPy3k; diff --git a/pkgs/applications/editors/texmaker/default.nix b/pkgs/applications/editors/texmaker/default.nix index 036bd8e546c4..79ece9d62a98 100644 --- a/pkgs/applications/editors/texmaker/default.nix +++ b/pkgs/applications/editors/texmaker/default.nix @@ -31,6 +31,6 @@ stdenv.mkDerivation rec { homepage = http://www.xm1math.net/texmaker/; license = licenses.gpl2Plus; platforms = platforms.linux; - maintainers = with maintainers; [ cfouche ]; + maintainers = with maintainers; [ cfouche markuskowa ]; }; } diff --git a/pkgs/applications/editors/textadept/default.nix b/pkgs/applications/editors/textadept/default.nix index f17f5a9a26a4..79cad6a9782c 100644 --- a/pkgs/applications/editors/textadept/default.nix +++ b/pkgs/applications/editors/textadept/default.nix @@ -1,139 +1,29 @@ -{ stdenv, fetchhg, fetchurl, fetchzip, gtk2, glib, pkgconfig, unzip, ncurses, zip }: -let - # Textadept requires a whole bunch of external dependencies. - # The build system expects to be able to download them with wget. - # This expression gets Nix to fetch them instead. - - - cached_url = url: sha256: fetchurl { - inherit sha256 url; - }; - - get_url = url: sha256: let - store_path = cached_url url sha256; - in '' - local_path=$(basename ${store_path} | sed -e 's@^[0-9a-z]\+-@@') - - # Copy the file from the Nix store and remove the hash part. - cp ${store_path} $local_path - - # Update its access and modified times. - touch $local_path - ''; - - cached_url_zip = url: sha256: fetchzip { - inherit sha256 url; - }; - - get_url_zip = url: sha256: let - store_path = cached_url_zip url sha256; - in '' - ( - build_dir=$PWD - cd $TMPDIR - - local_path=$(basename ${url} .zip) - - cp -r ${store_path} $local_path - chmod u+rwX -R $local_path - zip -r $build_dir/$local_path.zip $local_path - touch $local_path - ) - ''; - - - # These lists are taken from the Makefile. - scintilla_tgz = "scintilla373.tgz"; - tre_zip = "cdce45e8dd7a3b36954022b4a4d3570e1ac5a4f8.zip"; - scinterm_zip = "scinterm_1.8.zip"; - scintillua_zip = "33298b6cbce3.zip"; - lua_tgz = "lua-5.3.4.tar.gz"; - lpeg_tgz = "lpeg-1.0.0.tar.gz"; - lfs_zip = "v_1_6_3.zip"; - lspawn_zip = "lspawn_1.5.zip"; - luajit_tgz = "LuaJIT-2.0.3.tar.gz"; - libluajit_tgz = "libluajit_2.0.3.x86_64.tgz"; - gtdialog_zip = "gtdialog_1.3.zip"; - cdk_tgz = "cdk-5.0-20150928.tgz"; - termkey_tgz = "libtermkey-0.17.tar.gz"; - - scinterm_url = "http://foicica.com/scinterm/download/" + scinterm_zip; - tre_url = "https://github.com/laurikari/tre/archive/" + tre_zip; - #scintillua_url = "http://foicica.com/scintillua/download/" + scintillua_zip; - scintillua_url = "http://foicica.com/hg/scintillua/archive/" + scintillua_zip; - gtdialog_url = "http://foicica.com/gtdialog/download/" + gtdialog_zip; - lspawn_url = "http://foicica.com/lspawn/download/" + lspawn_zip; - - scintilla_url = "mirror://sourceforge/scintilla/" + scintilla_tgz; - lua_url = "http://www.lua.org/ftp/" + lua_tgz; - lpeg_url = "http://www.inf.puc-rio.br/~roberto/lpeg/" + lpeg_tgz; - lfs_url = "https://github.com/keplerproject/luafilesystem/archive/" + lfs_zip; - luajit_url = "http://luajit.org/download/" + luajit_tgz; - libluajit_url = "http://foicica.com/textadept/download/" + libluajit_tgz; - cdk_url = "http://invisible-mirror.net/archives/cdk/" + cdk_tgz; - bombay_url = "http://foicica.com/hg/bombay/archive/tip.zip"; - termkey_url = "http://www.leonerd.org.uk/code/libtermkey/" + termkey_tgz; - - - get_scintilla = get_url scintilla_url "0rkczxzj6bqxks4jcbxbyrarjhfjh95nwxxiqprfid1kaamgkfm2"; - get_tre = get_url tre_url "0mw8npwk5nnhc33352j4akannhpx77kqvfam8jdq1n4yf8js1gi7"; - get_scinterm = get_url scinterm_url "02ax6cjpxylfz7iqp1cjmsl323in066a38yklmsyzdl3w7761nxi"; - get_scintillua = get_url scintillua_url "1kx113dpjby1p9jcsqlnlzwj01z94f9szw4b38077qav3bj4lk6g"; - get_lua = get_url lua_url "0320a8dg3aci4hxla380dx1ifkw8gj4gbw5c4dz41g1kh98sm0gn"; - get_lpeg = get_url lpeg_url "13mz18s359wlkwm9d9iqlyyrrwjc6iqfpa99ai0icam2b3khl68h"; - get_lfs = get_url_zip lfs_url "1hxcnqj53540ysyw8fzax7f09pl98b8f55s712gsglcdxp2g2pri"; - get_lspawn = get_url lspawn_url "09c6v9irblay2kv1n7i59pyj9g4xb43c6rfa7ba5m353lymcwwqi"; - get_luajit = get_url luajit_url "0ydxpqkmsn2c341j4r2v6r5r0ig3kbwv3i9jran3iv81s6r6rgjm"; - get_libluajit = get_url libluajit_url "1nhvcdjpqrhd5qbihdm3bxpw84irfvnw2vmfqnsy253ay3dxzrgy"; - get_gtdialog = get_url gtdialog_url "0nvcldyhj8abr8jny9pbyfjwg8qfp9f2h508vjmrvr5c5fqdbbm0"; - get_cdk = get_url cdk_url "0j74l874y33i26y5kjg3pf1vswyjif8k93pqhi0iqykpbxfsg382"; - get_bombay = get_url_zip bombay_url "0illabngrrxidkprgz268wgjqknrds34nhm6hav95xc1nmsdr6jj" - + "mv tip.zip bombay.zip\n"; - get_termkey = get_url termkey_url "12gkrv1ldwk945qbpprnyawh0jz7rmqh18fyndbxiajyxmj97538"; - - - get_deps = get_scintilla - + get_tre - + get_scinterm - + get_scintillua - + get_lua - + get_lpeg - + get_lfs - + get_lspawn - + get_luajit - + get_libluajit - + get_gtdialog - + get_cdk - + get_bombay - + get_termkey; -in +{ lib, stdenv, fetchhg, fetchurl, gtk2, glib, pkgconfig, unzip, ncurses, zip }: stdenv.mkDerivation rec { - version = "9.3"; + version = "10.2"; name = "textadept-${version}"; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ - gtk2 glib unzip ncurses zip + gtk2 ncurses glib unzip zip ]; src = fetchhg { url = http://foicica.com/hg/textadept; rev = "textadept_${version}"; - sha256 = "18x79pazm86agn1khdxfnf87la6kli3xasi7dcjx7l6yyz19y14d"; + sha256 = "0fai8xqddkkprmbf0cf8wwgv7ccfdb1iyim30nppm2m16whkc8fl"; }; - preConfigure = '' + preConfigure = + lib.concatStringsSep "\n" (lib.mapAttrsToList (name: params: + "ln -s ${fetchurl params} $PWD/src/${name}" + ) (import ./deps.nix)) + '' + + # work around trying to download stuff in `make deps` + function wget() { true; } + export -f wget + cd src - - # Make a dummy wget. - mkdir wget - echo '#! ${stdenv.shell}' > wget/wget - chmod a+x wget/wget - export PATH="$PATH:$PWD/wget" - - ${get_deps} - - # Let the build system do whatever setup it needs to do with these files. make deps ''; diff --git a/pkgs/applications/editors/textadept/deps.nix b/pkgs/applications/editors/textadept/deps.nix new file mode 100644 index 000000000000..80306191ff12 --- /dev/null +++ b/pkgs/applications/editors/textadept/deps.nix @@ -0,0 +1,42 @@ +{ + "542782a4df7d.zip" = { + url = "http://foicica.com/hg/scintilla/archive/542782a4df7d.zip"; + sha256 = "1qwxxcj86z9y7ij05j60lcp1awy2c9ck0vnn9z6c732sqjza0zx5"; + }; + "lua-5.3.5.tar.gz" = { + url = "http://www.lua.org/ftp/lua-5.3.5.tar.gz"; + sha256 = "1b2qn2rv96nmbm6zab4l877bd4zq7wpwm8drwjiy2ih4jqzysbhc"; + }; + "lpeg-1.0.0.tar.gz" = { + url = "http://www.inf.puc-rio.br/~roberto/lpeg/lpeg-1.0.0.tar.gz"; + sha256 = "13mz18s359wlkwm9d9iqlyyrrwjc6iqfpa99ai0icam2b3khl68h"; + }; + "v_1_6_3.zip" = { + url = "https://github.com/keplerproject/luafilesystem/archive/v_1_6_3.zip"; + sha256 = "044s125im2irb4i42nnc5shvjj25fp4vsdbzd6b0va5igj0f6h4y"; + }; + "6435a42450c7.zip" = { + url = "http://foicica.com/hg/gtdialog/archive/6435a42450c7.zip"; + sha256 = "1vxn89sif3qccksb6x5iprysqhjg69g7nyxlgrg31q397dmsg1ym"; + }; + "cdk-5.0-20150928.tgz" = { + url = "http://invisible-mirror.net/archives/cdk/cdk-5.0-20150928.tgz"; + sha256 = "0j74l874y33i26y5kjg3pf1vswyjif8k93pqhi0iqykpbxfsg382"; + }; + "libtermkey-0.20.tar.gz" = { + url = "http://www.leonerd.org.uk/code/libtermkey/libtermkey-0.20.tar.gz"; + sha256 = "1xfj6lchhfljmbcl6dz8dpakppyy13nbl4ykxiv5x4dr9b4qf3bc"; + }; + "pdcurs36.zip" = { + url = "http://prdownloads.sourceforge.net/pdcurses/pdcurs36.zip"; + sha256 = "0y91zpygrxms7d1l5ksrz42bkvq8jd2xqlj5j7wgyxcl58chcw9b"; + }; + "bombay.zip" = { + url = "http://foicica.com/hg/bombay/archive/b25520cc76bb.zip"; + sha256 = "07spq7jmkfyq20gv67yffara3ln3ns2xi0k02m2mxdms3xm1q36h"; + }; + "cloc-1.60.pl" = { + url = "http://prdownloads.sourceforge.net/cloc/cloc-1.60.pl"; + sha256 = "0p504bi19va3dh274v7lb7giqrydwa5yyry60f7jpz84y6z71a2a"; + }; +} diff --git a/pkgs/applications/editors/vscode/default.nix b/pkgs/applications/editors/vscode/default.nix index 08c8561abeda..0c0441f20257 100644 --- a/pkgs/applications/editors/vscode/default.nix +++ b/pkgs/applications/editors/vscode/default.nix @@ -1,39 +1,33 @@ -{ stdenv, lib, fetchurl, unzip, atomEnv, makeDesktopItem, - gtk2, wrapGAppsHook, libXScrnSaver, libxkbfile, libsecret, - isInsiders ? false }: +{ stdenv, lib, fetchurl, makeDesktopItem +, unzip, libsecret, libXScrnSaver, wrapGAppsHook +, gtk2, atomEnv, at-spi2-atk, autoPatchelfHook +, systemd, fontconfig +, isInsiders ? false }: let executableName = "code" + lib.optionalString isInsiders "-insiders"; longName = "Visual Studio Code" + lib.optionalString isInsiders " - Insiders"; shortName = "Code" + lib.optionalString isInsiders " - Insiders"; + inherit (stdenv.hostPlatform) system; + plat = { "i686-linux" = "linux-ia32"; "x86_64-linux" = "linux-x64"; "x86_64-darwin" = "darwin"; - }.${stdenv.hostPlatform.system}; + }.${system}; sha256 = { - "i686-linux" = "1g73fay6fxlqhalkqq5m6rjbp68k9npk0rrxrkhdj8mw0cz74dpm"; - "x86_64-linux" = "0mil8n5i2ajdyrgq862wq59ajy2122rvvn7m7mxq4ab92sk26rix"; - "x86_64-darwin" = "07r52scs1sgafzxqal39r8vf9p9qqvwwx8f6z09gqcf6clr6k48q"; - }.${stdenv.hostPlatform.system}; - - archive_fmt = if stdenv.hostPlatform.system == "x86_64-darwin" then "zip" else "tar.gz"; - - rpath = lib.concatStringsSep ":" [ - atomEnv.libPath - "${lib.makeLibraryPath [gtk2]}" - "${lib.makeLibraryPath [libsecret]}/libsecret-1.so.0" - "${lib.makeLibraryPath [libXScrnSaver]}/libXss.so.1" - "${lib.makeLibraryPath [libxkbfile]}/libxkbfile.so.1" - "$out/lib/vscode" - ]; + "i686-linux" = "09mgvff27iljj9z7h0xxmr6152hcxh7qqxl3i7wdc55ra1rsjq1n"; + "x86_64-linux" = "1gvlvg3cjsscx6khy5gxd4wnb069kska00qdfwcq4kn7x1z04xnz"; + "x86_64-darwin" = "1mf9nyjnxgmzai7rfd1rkwk0wvil0ripg3mh8icg4mld2jjz8rsy"; + }.${system}; + archive_fmt = if system == "x86_64-darwin" then "zip" else "tar.gz"; in stdenv.mkDerivation rec { name = "vscode-${version}"; - version = "1.30.2"; + version = "1.31.0"; src = fetchurl { name = "VSCode_${version}_${plat}.${archive_fmt}"; @@ -83,12 +77,18 @@ in ''; }; - buildInputs = if stdenv.hostPlatform.system == "x86_64-darwin" - then [ unzip libXScrnSaver libsecret ] - else [ wrapGAppsHook libXScrnSaver libxkbfile libsecret ]; + buildInputs = (if stdenv.isDarwin + then [ unzip ] + else [ gtk2 at-spi2-atk wrapGAppsHook ] ++ atomEnv.packages) + ++ [ libsecret libXScrnSaver ]; + + nativeBuildInputs = lib.optional (!stdenv.isDarwin) autoPatchelfHook; + + dontBuild = true; + dontConfigure = true; installPhase = - if stdenv.hostPlatform.system == "x86_64-darwin" then '' + if system == "x86_64-darwin" then '' mkdir -p $out/lib/vscode $out/bin cp -r ./* $out/lib/vscode ln -s $out/lib/vscode/Contents/Resources/app/bin/${executableName} $out/bin @@ -110,22 +110,8 @@ in cp $out/lib/vscode/resources/app/resources/linux/code.png $out/share/pixmaps/code.png ''; - postFixup = lib.optionalString (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux") '' - patchelf \ - --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \ - --set-rpath "${rpath}" \ - $out/lib/vscode/${executableName} - - patchelf \ - --set-rpath "${rpath}" \ - $out/lib/vscode/resources/app/node_modules.asar.unpacked/keytar/build/Release/keytar.node - - patchelf \ - --set-rpath "${rpath}" \ - "$out/lib/vscode/resources/app/node_modules.asar.unpacked/native-keymap/build/Release/\ - keymapping.node" - - ln -s ${lib.makeLibraryPath [libsecret]}/libsecret-1.so.0 $out/lib/vscode/libsecret-1.so.0 + preFixup = lib.optionalString (system == "i686-linux" || system == "x86_64-linux") '' + gappsWrapperArgs+=(--prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ systemd fontconfig ]}) ''; meta = with stdenv.lib; { @@ -143,6 +129,7 @@ in homepage = http://code.visualstudio.com/; downloadPage = https://code.visualstudio.com/Updates; license = licenses.unfree; + maintainers = with maintainers; [ eadwu ]; platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ]; }; } diff --git a/pkgs/applications/graphics/ipe/default.nix b/pkgs/applications/graphics/ipe/default.nix index ee5c348eb6be..140227eb9eca 100644 --- a/pkgs/applications/graphics/ipe/default.nix +++ b/pkgs/applications/graphics/ipe/default.nix @@ -3,26 +3,16 @@ }: stdenv.mkDerivation rec { - name = "ipe-7.2.9"; + name = "ipe-7.2.10"; src = fetchurl { url = "https://dl.bintray.com/otfried/generic/ipe/7.2/${name}-src.tar.gz"; - sha256 = "1i0h0q32xvbb0d3y2ff76jxnaw05hjf2z5gzww886z8arxwar1xn"; + sha256 = "0rm31kvyg30452bz12yi49bkhdmi4bjdx6zann5cdlbi0pvmx7xh"; }; - # changes taken from Gentoo portage - preConfigure = '' - cd src - sed -i \ - -e 's/fpic/fPIC/' \ - -e 's/moc-qt4/moc/' \ - config.mak || die - sed -i -e 's/install -s/install/' common.mak || die - ''; + sourceRoot = "${name}/src"; - NIX_CFLAGS_COMPILE = [ "-std=c++11" ]; # build with Qt 5.7 - - IPEPREFIX="$$out"; + IPEPREFIX="${placeholder "out"}"; URWFONTDIR="${texlive}/texmf-dist/fonts/type1/urw/"; LUA_PACKAGE = "lua"; @@ -38,6 +28,8 @@ stdenv.mkDerivation rec { done ''; + enableParallelBuilding = true; + #TODO: make .desktop entry meta = { diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix index 06512f6123b1..ef0b49f8d7ba 100644 --- a/pkgs/applications/misc/alacritty/default.nix +++ b/pkgs/applications/misc/alacritty/default.nix @@ -43,16 +43,16 @@ let ]; in buildRustPackage rec { name = "alacritty-${version}"; - version = "0.2.6"; + version = "0.2.9"; src = fetchFromGitHub { owner = "jwilm"; repo = "alacritty"; rev = "v${version}"; - sha256 = "1yjmlvxs5vwqhgjlb83a4hq2b12zzhr4pp209djprgdi0cf2bbqw"; + sha256 = "01wzkpbz6jjmpmnkqswilnn069ir3cx3jvd3j7zsvqdxqpwncz39"; }; - cargoSha256 = "11n5xl43l07zycdg0icv4i7mh6zy4ia6aw48i0wm59xqdl7xqn9f"; + cargoSha256 = "0h9wczgpjh52lhrqg0r2dkrh5svmyvrvh4yj7p0nz45skgrnl8w9"; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/misc/todoist/default.nix b/pkgs/applications/misc/todoist/default.nix new file mode 100644 index 000000000000..abe1fda23445 --- /dev/null +++ b/pkgs/applications/misc/todoist/default.nix @@ -0,0 +1,24 @@ +{ lib, buildGoPackage, fetchFromGitHub }: + +buildGoPackage rec { + name = "todoist-${version}"; + version = "0.13.1"; + + goPackagePath = "github.com/sachaos/todoist"; + + src = fetchFromGitHub { + owner = "sachaos"; + repo = "todoist"; + rev = "v${version}"; + sha256 = "1kwvlsjr2a7wdhlwpxxpdh87wz8k9yjwl59vl2g7ya6m0rvhd3mc"; + }; + + goDeps = ./deps.nix; + + meta = { + homepage = https://github.com/sachaos/todoist; + description = "Todoist CLI Client"; + license = lib.licenses.mit; + platforms = lib.platforms.unix; + }; +} diff --git a/pkgs/applications/misc/todoist/deps.nix b/pkgs/applications/misc/todoist/deps.nix new file mode 100644 index 000000000000..9b132e29c779 --- /dev/null +++ b/pkgs/applications/misc/todoist/deps.nix @@ -0,0 +1,237 @@ +# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) +[ + { + goPackagePath = "github.com/BurntSushi/toml"; + fetch = { + type = "git"; + url = "https://github.com/BurntSushi/toml"; + rev = "v0.3.1"; + sha256 = "1fjdwwfzyzllgiwydknf1pwjvy49qxfsczqx5gz3y0izs7as99j6"; + }; + } + { + goPackagePath = "github.com/davecgh/go-spew"; + fetch = { + type = "git"; + url = "https://github.com/davecgh/go-spew"; + rev = "v1.1.1"; + sha256 = "0hka6hmyvp701adzag2g26cxdj47g21x6jz4sc6jjz1mn59d474y"; + }; + } + { + goPackagePath = "github.com/fatih/color"; + fetch = { + type = "git"; + url = "https://github.com/fatih/color"; + rev = "v1.7.0"; + sha256 = "0v8msvg38r8d1iiq2i5r4xyfx0invhc941kjrsg5gzwvagv55inv"; + }; + } + { + goPackagePath = "github.com/fsnotify/fsnotify"; + fetch = { + type = "git"; + url = "https://github.com/fsnotify/fsnotify"; + rev = "v1.4.7"; + sha256 = "07va9crci0ijlivbb7q57d2rz9h27zgn2fsm60spjsqpdbvyrx4g"; + }; + } + { + goPackagePath = "github.com/gofrs/uuid"; + fetch = { + type = "git"; + url = "https://github.com/gofrs/uuid"; + rev = "v3.2.0"; + sha256 = "1q63mp7bznhfgyw133c0wc0hpcj1cq9bcf7w1f8r6inkcrils1fz"; + }; + } + { + goPackagePath = "github.com/hashicorp/hcl"; + fetch = { + type = "git"; + url = "https://github.com/hashicorp/hcl"; + rev = "v1.0.0"; + sha256 = "0q6ml0qqs0yil76mpn4mdx4lp94id8vbv575qm60jzl1ijcl5i66"; + }; + } + { + goPackagePath = "github.com/magiconair/properties"; + fetch = { + type = "git"; + url = "https://github.com/magiconair/properties"; + rev = "v1.8.0"; + sha256 = "1a10362wv8a8qwb818wygn2z48lgzch940hvpv81hv8gc747ajxn"; + }; + } + { + goPackagePath = "github.com/mattn/go-colorable"; + fetch = { + type = "git"; + url = "https://github.com/mattn/go-colorable"; + rev = "v0.0.9"; + sha256 = "1nwjmsppsjicr7anq8na6md7b1z84l9ppnlr045hhxjvbkqwalvx"; + }; + } + { + goPackagePath = "github.com/mattn/go-isatty"; + fetch = { + type = "git"; + url = "https://github.com/mattn/go-isatty"; + rev = "v0.0.4"; + sha256 = "0zs92j2cqaw9j8qx1sdxpv3ap0rgbs0vrvi72m40mg8aa36gd39w"; + }; + } + { + goPackagePath = "github.com/mitchellh/go-homedir"; + fetch = { + type = "git"; + url = "https://github.com/mitchellh/go-homedir"; + rev = "v1.0.0"; + sha256 = "0f0z0aa4wivk4z1y503dmnw0k0g0g403dly8i4q263gfshs82sbq"; + }; + } + { + goPackagePath = "github.com/mitchellh/mapstructure"; + fetch = { + type = "git"; + url = "https://github.com/mitchellh/mapstructure"; + rev = "v1.0.0"; + sha256 = "0f06q4fpzg0c370cvmpsl0iq2apl5nkbz5cd3nba5x5ysmshv1lm"; + }; + } + { + goPackagePath = "github.com/pelletier/go-toml"; + fetch = { + type = "git"; + url = "https://github.com/pelletier/go-toml"; + rev = "v1.2.0"; + sha256 = "1fjzpcjng60mc3a4b2ql5a00d5gah84wj740dabv9kq67mpg8fxy"; + }; + } + { + goPackagePath = "github.com/pkg/browser"; + fetch = { + type = "git"; + url = "https://github.com/pkg/browser"; + rev = "0a3d74bf9ce4"; + sha256 = "0lv6kwvm31n79mh14a63zslaf4l9bspi2q0i8i9im4njfl42iv1c"; + }; + } + { + goPackagePath = "github.com/pmezard/go-difflib"; + fetch = { + type = "git"; + url = "https://github.com/pmezard/go-difflib"; + rev = "v1.0.0"; + sha256 = "0c1cn55m4rypmscgf0rrb88pn58j3ysvc2d0432dp3c6fqg6cnzw"; + }; + } + { + goPackagePath = "github.com/spf13/afero"; + fetch = { + type = "git"; + url = "https://github.com/spf13/afero"; + rev = "v1.1.2"; + sha256 = "0miv4faf5ihjfifb1zv6aia6f6ik7h1s4954kcb8n6ixzhx9ck6k"; + }; + } + { + goPackagePath = "github.com/spf13/cast"; + fetch = { + type = "git"; + url = "https://github.com/spf13/cast"; + rev = "v1.2.0"; + sha256 = "177bk7lq40jbgv9p9r80aydpaccfk8ja3a7jjhfwiwk9r1pa4rr2"; + }; + } + { + goPackagePath = "github.com/spf13/jwalterweatherman"; + fetch = { + type = "git"; + url = "https://github.com/spf13/jwalterweatherman"; + rev = "v1.0.0"; + sha256 = "093fmmvavv84pv4q84hav7ph3fmrq87bvspjj899q0qsx37yvdr8"; + }; + } + { + goPackagePath = "github.com/spf13/pflag"; + fetch = { + type = "git"; + url = "https://github.com/spf13/pflag"; + rev = "v1.0.2"; + sha256 = "005598piihl3l83a71ahj10cpq9pbhjck4xishx1b4dzc02r9xr2"; + }; + } + { + goPackagePath = "github.com/spf13/viper"; + fetch = { + type = "git"; + url = "https://github.com/spf13/viper"; + rev = "v1.2.1"; + sha256 = "0y7czxki8zhjhanh5ydnx4sf2darw70z2i5dskgarbk4gjmagx6k"; + }; + } + { + goPackagePath = "github.com/stretchr/testify"; + fetch = { + type = "git"; + url = "https://github.com/stretchr/testify"; + rev = "v1.2.2"; + sha256 = "0dlszlshlxbmmfxj5hlwgv3r22x0y1af45gn1vd198nvvs3pnvfs"; + }; + } + { + goPackagePath = "github.com/urfave/cli"; + fetch = { + type = "git"; + url = "https://github.com/urfave/cli"; + rev = "v1.20.0"; + sha256 = "0y6f4sbzkiiwrxbl15biivj8c7qwxnvm3zl2dd3mw4wzg4x10ygj"; + }; + } + { + goPackagePath = "golang.org/x/sys"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/sys"; + rev = "8cf3aee42992"; + sha256 = "1l2hyd5z91jzml5isn1i0g882pxbxk0x6ry5vdwghrprcx06syag"; + }; + } + { + goPackagePath = "golang.org/x/text"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/text"; + rev = "v0.3.0"; + sha256 = "0r6x6zjzhr8ksqlpiwm5gdd7s209kwk5p4lw54xjvz10cs3qlq19"; + }; + } + { + goPackagePath = "golang.org/x/tools"; + fetch = { + type = "git"; + url = "https://go.googlesource.com/tools"; + rev = "77439c55185e"; + sha256 = "15f7yghpw9yn00s1k8czld8cm3kvjx5rzda2gfm8pq5542i8w9rs"; + }; + } + { + goPackagePath = "gopkg.in/check.v1"; + fetch = { + type = "git"; + url = "https://gopkg.in/check.v1"; + rev = "20d25e280405"; + sha256 = "0k1m83ji9l1a7ng8a7v40psbymxasmssbrrhpdv2wl4rhs0nc3np"; + }; + } + { + goPackagePath = "gopkg.in/yaml.v2"; + fetch = { + type = "git"; + url = "https://gopkg.in/yaml.v2"; + rev = "v2.2.1"; + sha256 = "0dwjrs2lp2gdlscs7bsrmyc5yf6mm4fvgw71bzr9mv2qrd2q73s1"; + }; + } +] diff --git a/pkgs/applications/misc/xmrig/default.nix b/pkgs/applications/misc/xmrig/default.nix index c8ff2d479a06..cb2b682a952f 100644 --- a/pkgs/applications/misc/xmrig/default.nix +++ b/pkgs/applications/misc/xmrig/default.nix @@ -4,20 +4,22 @@ stdenv.mkDerivation rec { name = "xmrig-${version}"; - version = "2.10.0"; + version = "2.11.0"; src = fetchFromGitHub { owner = "xmrig"; repo = "xmrig"; rev = "v${version}"; - sha256 = "10nqwxj8j2ciw2h178g2z5lrzv48xsi2a4v6s0ha93hfbjzvag5a"; + sha256 = "0k897lx60gjf464j2ndindxhr6x3l90fv81bcqyglsv47danivlc"; }; nativeBuildInputs = [ cmake ]; buildInputs = [ libuv libmicrohttpd openssl ]; postPatch = '' - substituteInPlace src/donate.h --replace "kDonateLevel = 5;" "kDonateLevel = ${toString donateLevel};" + substituteInPlace src/donate.h \ + --replace "kDefaultDonateLevel = 5;" "kDefaultDonateLevel = ${toString donateLevel};" \ + --replace "kMinimumDonateLevel = 1;" "kMinimumDonateLevel = ${toString donateLevel};" ''; installPhase = '' diff --git a/pkgs/applications/misc/xmrig/proxy.nix b/pkgs/applications/misc/xmrig/proxy.nix index c013a9cc44ec..2df0cdafdc4b 100644 --- a/pkgs/applications/misc/xmrig/proxy.nix +++ b/pkgs/applications/misc/xmrig/proxy.nix @@ -1,24 +1,28 @@ -{ stdenv, lib, fetchFromGitHub, cmake, libuv, libmicrohttpd, libuuid +{ stdenv, lib, fetchFromGitHub, cmake, libuv, libmicrohttpd, libuuid, openssl , donateLevel ? 0 }: stdenv.mkDerivation rec { name = "xmrig-proxy-${version}"; - version = "2.6.4"; + version = "2.11.0"; src = fetchFromGitHub { owner = "xmrig"; repo = "xmrig-proxy"; rev = "v${version}"; - sha256 = "0h6ihrrkgwi8k642iqq13qx3zlxl9r8q7wm417hb7j35rnmwn8lq"; + sha256 = "1jjcgnpkxdafsdsxndsvzd84i6mwk7ix4vvgs3k1dla9ll9nwq5j"; }; nativeBuildInputs = [ cmake ]; - buildInputs = [ libuv libmicrohttpd libuuid ]; + buildInputs = [ libuv libmicrohttpd libuuid openssl ]; - # Set default donation level to 0%. Can be increased at runtime via --donate-level option. postPatch = '' - substituteInPlace src/donate.h --replace "kDonateLevel = 2;" "kDonateLevel = ${toString donateLevel};" + # Set default donation level to 0%. Can be increased at runtime via --donate-level option. + substituteInPlace src/donate.h \ + --replace "kDefaultDonateLevel = 2;" "kDefaultDonateLevel = ${toString donateLevel};" + + # Link dynamically against libuuid instead of statically + substituteInPlace CMakeLists.txt --replace uuid.a uuid ''; installPhase = '' diff --git a/pkgs/applications/networking/browsers/chromium/plugins.nix b/pkgs/applications/networking/browsers/chromium/plugins.nix index 814a5117ae0e..a097b9fac4ec 100644 --- a/pkgs/applications/networking/browsers/chromium/plugins.nix +++ b/pkgs/applications/networking/browsers/chromium/plugins.nix @@ -100,11 +100,11 @@ let flash = stdenv.mkDerivation rec { name = "flashplayer-ppapi-${version}"; - version = "32.0.0.114"; + version = "32.0.0.142"; src = fetchzip { url = "https://fpdownload.adobe.com/pub/flashplayer/pdc/${version}/flash_player_ppapi_linux.x86_64.tar.gz"; - sha256 = "11b47w14hgvp7lpis39a9vkncla7lvqrgc717v4mwj6p741z7v78"; + sha256 = "1mifgrfcvz1mc5w9s0df498z2dma50yq3vqw3pz82wxynmk28gq9"; stripRoot = false; }; diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix index f63ad6fde762..6f6a69369a0d 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix @@ -1,18 +1,18 @@ # This file is autogenerated from update.sh in the same directory. { beta = { - sha256 = "01l0vlvcckpag376mjld7qprv63l0z8li689k0h6v3h0i7irzs6z"; - sha256bin64 = "1dwxys43hn72inxja27jqq3mkiri6nf7ysrfwnnlvyg2iqz83avx"; - version = "72.0.3626.81"; + sha256 = "1kbcn8yzgrn41d12806bsycnw6xyjbgv4d8nk0y4x2hymg34vc2k"; + sha256bin64 = "0irafrmz9c3s8bdkqkwhj96v090ynvvbs50qzcdmidw8iqh2x1f8"; + version = "73.0.3683.27"; }; dev = { - sha256 = "1mdna7k715bxxd6cli4zryclp2p5l6i2dvfgzsfifgvgf2915hiz"; - sha256bin64 = "01w05dpmc7h0pwh0rjslr3iqaxhmnb12nmj4rs7w1yq9c58zf1qr"; - version = "73.0.3679.0"; + sha256 = "0gyzil473kn7mqpa1dp3pai0x7vk8rw2bkqr3z0p33fx2g7b7y5s"; + sha256bin64 = "1clr6xr08mmzmi71jy5ri4b2cp4qaf5apynbd9gnrp6qiy04rmn2"; + version = "73.0.3683.20"; }; stable = { - sha256 = "01l0vlvcckpag376mjld7qprv63l0z8li689k0h6v3h0i7irzs6z"; - sha256bin64 = "09fsj90sjw3srkrq12l2bh39r172s783riyzi5y2g0wlyhxalpql"; - version = "72.0.3626.81"; + sha256 = "0fxavi4nwfiyb15lqm02vlq6kb8i4ipxnd7hp45bm7jdmhmgbnmj"; + sha256bin64 = "1gz1ga8d3a4q1n6bdb79wv8ldlksvj0mlnrs5k1safwzlv11prsx"; + version = "72.0.3626.96"; }; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index 034233f5584e..256d2e39cded 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,995 +1,995 @@ { - version = "66.0b5"; + version = "66.0b7"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/66.0b5/linux-x86_64/ach/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/66.0b7/linux-x86_64/ach/firefox-66.0b7.tar.bz2"; 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} - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/sq/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/sq/firefox-66.0b7.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha512 = "454ef28169422d558929ea2f2be5c087f355ffd85869159f06d12d2328de38e0d624cb384722474d50bc8cbab529d1e830b776d2d138e26bf488e4e75e72039a"; + sha512 = "2bcd1ba640008b38c9b00a5bd1d7262e66a48145dee08870f4f175d2f8639aa30dd67d2ea720c4fe5d7db8c364967d187bad7e1851f241e15e688a0332a2c6b7"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/sr/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/sr/firefox-66.0b7.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha512 = "a3fa4b1db89ce3e1938d603d76b6b488b28a69886554b9f43503bebcfb9c65514b151321540a86ae60d2f1d01f6a4a62cf81a0526a248e9ce694732702ec77b2"; + sha512 = "9c4a686480402299710579ce8e2d40289802cf05f8c188ab65fcf40d236c37e7e4e244f9b5d1e79abb347643b0fa65d16cd5ea2256a7488371e7ef6e7b3a2f8f"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/sv-SE/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/sv-SE/firefox-66.0b7.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha512 = "c11bdbacea1c45d42c48c8eeb96a6300aca16625f0a69a4e78e7b9806aef48ae3cf8b4c2317afdfc2593b919022d30fb5dc2089309c507bb88d9c55cbc21cdc2"; + sha512 = "ff0db370979bfe4cc2542a2048b05aa6e10ff8965719a0ae371d196566981ad449c42acb6b6a44aa2a19cca768ac7f4074c27e1741fff8d7908855d1ff8c06bd"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/ta/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/ta/firefox-66.0b7.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha512 = "558a598ee70a958c9dee23b3ee4bdd325749e52d416dd2eea95af5eb1c6f748d27577a2c5f07e7d44b412be4e3bbf806ddf78a5628df32f83d30008b34eb4721"; + sha512 = "330334037c1f2fdccb8700b3068e6e10ee6a52090b106aceb7f96e3b55cc2797bf3a483cfddf7440f0280e54f3115f280a420ea78d4bc934cc570dd8590d1190"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/te/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/te/firefox-66.0b7.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha512 = "39fd59f8e54e7bc7ff510ab153c3627c4abeb5f7b6bfc084aa9ac58b95ae8a0a6fee42b0b8110d6cda8c1b62da77d6429b41546a469c9d148ea38f2fa056b638"; + sha512 = "0ab6da55daead9c2e83d4595b3f282f3cf9f5747ab435f098e38cc664c42c1b9490730126cb73a85a2b5a3ee4016739d3d85987ae174a5a63d3921322cc22e54"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/th/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/th/firefox-66.0b7.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha512 = "41591bf6b657dd239a6dbd42d3edd24b9f4991f15fd9b60b8a9a5bad67dafe745e7b115a3e5c6d10db1319b0a1008238fcd710c6230e01055067aa7f8c62141f"; + sha512 = "2a4b8c5f185e017b01b4e2b54ada5237482dbc83125554e21325a1fee427ad64dbaa887fe02705618c074a51229748e2f091ae62cb2054e0b2c158d9a2c2d04f"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/tr/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/tr/firefox-66.0b7.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha512 = "dbc3db4a3d815e25a78b127fc290fa35ea9bc1aab5d3ad5a9e77e74dcd0314b8fe2d4e0bed8c00935e0ac724eb743d05341dcfa6690eb7064f74a65b8316a79f"; + sha512 = "fe07d4ada692091072ec0e636c95f000c9c5fcd3b403ad216230100bab2b5afd9c76098bd6bca3f1ebdee6189b3ead9b082d77b3fd24d52d0b3f358b24e59ecc"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/uk/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/uk/firefox-66.0b7.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha512 = "f15e73810339fb17baf16ae271f2707624d3fe06cdbffd090f1cf52f5f90885dfb555dfc09f19e6438926d93a50b282a6904c5af163ac7eec8862d8a62420b19"; + sha512 = "1f95b06b26b4a1005424640355f93d7a8eb7fe66f93e24f8728c2eb4e1f69919f1431abfcc2b5ef2a1c830b87f4b907f497ac72b28c5a81166878722333818ba"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/ur/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/ur/firefox-66.0b7.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha512 = "d138690ac1d8e1447efef0f76ff4030ba3e8d866f635c5ba3caebfe417baaf9cd795446284f8078851abd13dcbee83b7ea9366dd486a12a0d29beb70f6f2e7b0"; + sha512 = "76e41d84384f47a5d654972babce48b6aa4d17294bf6bd8fd0d47948a4428d5c81b87d6c1f657c5e6a8e84afb94e5dd23c7faa472f3b0104c87c408eb7ec752c"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/uz/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/uz/firefox-66.0b7.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha512 = "a6cbad45bde64d738fc4df3a63af45d2c059af7d02c86a313d5c39a30c6a56065c79cfc3dcd4e719c7ad8fb823784ffb57cdb0dea6da78dc5431736ced8e7de0"; + sha512 = "ee582f0c4500844a99e671d2dd18615e0e7faae2a41ca781fe2c8d05dc7256e931d34a559c9e2b976bb7a7347b1e51578727d0b014d59ee8d464279f561ddd47"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/vi/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/vi/firefox-66.0b7.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha512 = "7ae0ac3d309658510c34fe3714f56b6ff4393bf6cec9e8072d94eb36493a4bb3abce47eb634a02be2669f4f123f35bf5ece733dbbbd3fa4cc1dd50bef6a61224"; + sha512 = "705eea5171f9059a2ad02d15f58959a6a85656de44e7b301f851a7835ba6a1d8a6b908ddd9048e357141a6bcd9c03075650376eef0f859823604991db19a3671"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/xh/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/xh/firefox-66.0b7.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha512 = "c31f304029f6700bafc919ad61ca103b4fe59001b5d8452619ac563d30e08758c8341e2c48d64a623dbd5c1cfc91ca7d80ea6c8dc3661169a3526b597fad37b1"; + sha512 = "3a737d094a9d70ce72282a286beec8feffb397dec3ce032fc2f5013b0676455b3e8719f569d75a3849e42547752de6124f65bd618b0c629253d6360cd3a2efd0"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/zh-CN/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/zh-CN/firefox-66.0b7.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha512 = "4b1d6acea615d0bd84f270ca6fb19ffb93d9f98a924c6d59593954c7131fa454759bb93676323f5983b79888b9c54cd1ea922a8db05fc09845039d118be97982"; + sha512 = "eb79ef6b04a82305faefab6b775a41412d939a91ba819bd327eaccbee3b744f64294d0fc66fefbd848766d07e4fd21dbef2bcc862dc664d7d2367334d7f11750"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b5/linux-i686/zh-TW/firefox-66.0b5.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/66.0b7/linux-i686/zh-TW/firefox-66.0b7.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha512 = "d51268f8fffde7b00a4a73a0eb6089cd6c059ad55237c74134442f097d6eccb2b7c4b6031925a41f5d3a20694233d760e6370dc6783d2fc54e6264d52f5125c4"; + sha512 = "dbc3b3568bf023830ff6fc009da3737c7609b7204307ca553e629150cecaf5f5e06cbee0fe95e02b040864fbb60b38ab1b319cf5bc9e3568387bfb49251d0b17"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/common.nix b/pkgs/applications/networking/browsers/firefox/common.nix index 2ef05a8f8d4b..1219f3bb895e 100644 --- a/pkgs/applications/networking/browsers/firefox/common.nix +++ b/pkgs/applications/networking/browsers/firefox/common.nix @@ -22,6 +22,7 @@ , pulseaudioSupport ? stdenv.isLinux, libpulseaudio , ffmpegSupport ? true , gtk3Support ? true, gtk2, gtk3, wrapGAppsHook +, waylandSupport ? true, libxkbcommon , gssSupport ? true, kerberos ## privacy-related options @@ -74,7 +75,7 @@ let flag = tf: x: [(if tf then "--enable-${x}" else "--disable-${x}")]; default-toolkit = if stdenv.isDarwin then "cairo-cocoa" - else "cairo-gtk${if gtk3Support then "3" else "2"}"; + else "cairo-gtk${if gtk3Support then "3${lib.optionalString waylandSupport "-wayland"}" else "2"}"; binaryName = if isIceCatLike then "icecat" else "firefox"; binaryNameCapitalized = lib.toUpper (lib.substring 0 1 binaryName) + lib.substring 1 (-1) binaryName; @@ -124,6 +125,7 @@ stdenv.mkDerivation rec { ++ lib.optional pulseaudioSupport libpulseaudio # only headers are needed ++ lib.optional gtk3Support gtk3 ++ lib.optional gssSupport kerberos + ++ lib.optional waylandSupport libxkbcommon ++ lib.optionals stdenv.isDarwin [ CoreMedia ExceptionHandling Kerberos AVFoundation MediaToolbox CoreLocation Foundation libobjc AddressBook cups ]; diff --git a/pkgs/applications/networking/browsers/firefox/wrapper.nix b/pkgs/applications/networking/browsers/firefox/wrapper.nix index 1c214230e4ed..bc3a1ed844a4 100644 --- a/pkgs/applications/networking/browsers/firefox/wrapper.nix +++ b/pkgs/applications/networking/browsers/firefox/wrapper.nix @@ -26,8 +26,11 @@ let , icon ? browserName , extraPlugins ? [] , extraNativeMessagingHosts ? [] + , gdkWayland ? false }: + assert gdkWayland -> (browser ? gtk3); # Can only use the wayland backend if gtk3 is being used + let cfg = config.${browserName} or {}; enableAdobeFlash = cfg.enableAdobeFlash or false; @@ -86,7 +89,7 @@ let exec = "${browserName}${nameSuffix} %U"; inherit icon; comment = ""; - desktopName = "${desktopName}${nameSuffix}"; + desktopName = "${desktopName}${nameSuffix}${lib.optionalString gdkWayland " (Wayland)"}"; genericName = "Web Browser"; categories = "Application;Network;WebBrowser;"; mimeType = stdenv.lib.concatStringsSep ";" [ @@ -124,7 +127,9 @@ let --suffix PATH ':' "$out${browser.execdir or "/bin"}" \ --set MOZ_APP_LAUNCHER "${browserName}${nameSuffix}" \ --set MOZ_SYSTEM_DIR "$out/lib/mozilla" \ - ${lib.optionalString (browser ? gtk3) + ${lib.optionalString gdkWayland '' + --set GDK_BACKEND "wayland" \ + ''}${lib.optionalString (browser ? gtk3) ''--prefix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH" \ --suffix XDG_DATA_DIRS : '${gnome3.defaultIconTheme}/share' '' diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix index 663c38466ff1..c48c36ad7a06 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix @@ -74,7 +74,7 @@ let in stdenv.mkDerivation rec { name = "flashplayer-${version}"; - version = "32.0.0.114"; + version = "32.0.0.142"; src = fetchurl { url = @@ -85,14 +85,14 @@ stdenv.mkDerivation rec { sha256 = if debug then if arch == "x86_64" then - "199dd2fkjfcavfzfd2d38y21155yxvj9yl838i8y63v9i5j5nhfj" + "1g3c0hzpf6lwfvlh8h3fl1vwfxc909nkpvrymwlc3vi3zpqwv4r7" else - "1b7g92ywwxrzfdj8acqx2r8k19y84ci2nhwwghjc7276q95gpzj8" + "14pyhynmjb88n5r9ds7v59vsrlzxfkr8zqnzgf6bj0h0x9grzhdv" else if arch == "x86_64" then - "17nzchmacyqnb184d23caz52w7sy5sr7d081iwc46wic0px78m3m" + "102ixxh2sq7bmasnifm9arvlqqvmmm4bazzdppib3pz2yh4yy7m2" else - "16slvhyqq0i7rlh2s5kpy78whkh57r129kva14wradx9yv8bqr7h"; + "1hg03fb4xc7h7lbx57wn1xvkhq096aijaxkb4b60wna04p62bdim"; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix index b6ea06fc113f..dd7b931b9405 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix @@ -50,7 +50,7 @@ stdenv.mkDerivation rec { name = "flashplayer-standalone-${version}"; - version = "32.0.0.114"; + version = "32.0.0.142"; src = fetchurl { url = @@ -60,9 +60,9 @@ stdenv.mkDerivation rec { "https://fpdownload.macromedia.com/pub/flashplayer/updaters/32/flash_player_sa_linux.x86_64.tar.gz"; sha256 = if debug then - "0wlzqdnl8lhbc428gcahld842bhia4aygy1k5vyyg27fwmskxhy7" + "1vp1nfys9pjmh3fmyp95yymmyvwrbmwjsmjhl5rnpwv5a0xn9nc6" else - "01a1dwrgw7lc098vp4ifkf5bj2qvv0pmdyibjhzzrx3387d1pd2l"; + "05r1z87zpllyb2hvj0fbps39hvkx5jzsqafyg62am8qm9khzs2qh"; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/applications/networking/instant-messengers/nheko/default.nix b/pkgs/applications/networking/instant-messengers/nheko/default.nix index 6e78a9034aec..4a669f127e54 100644 --- a/pkgs/applications/networking/instant-messengers/nheko/default.nix +++ b/pkgs/applications/networking/instant-messengers/nheko/default.nix @@ -20,13 +20,13 @@ let in stdenv.mkDerivation rec { name = "nheko-${version}"; - version = "0.6.2"; + version = "0.6.3"; src = fetchFromGitHub { - owner = "mujx"; + owner = "Nheko-Reborn"; repo = "nheko"; rev = "v${version}"; - sha256 = "014k68mmw3ys7ldgj96kkr1i1lyv2nk89wndkqznsizcr3097fn5"; + sha256 = "1h95lixciiq904dnfpwxhyf545yfsrphhwqyvs4yrzdfr9k0cf98"; }; # If, on Darwin, you encounter the error @@ -67,9 +67,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Desktop client for the Matrix protocol"; + homepage = https://github.com/Nheko-Reborn/nheko; maintainers = with maintainers; [ ekleog fpletz ]; platforms = platforms.unix; license = licenses.gpl3Plus; - knownVulnerabilities = [ "No longer maintained" ]; }; } diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix index 276bfca8bd55..668f466cf976 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix @@ -56,11 +56,11 @@ let in stdenv.mkDerivation rec { name = "signal-desktop-${version}"; - version = "1.21.1"; + version = "1.21.2"; src = fetchurl { url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb"; - sha256 = "1vs42kvaacsx8smaqpn1q9i0pb5wcca22a9s4467286b5n0lfc4r"; + sha256 = "0nr9d4z9c451nbzhjz3a1szx490rw1r01qf84xw72z7d7awn25ci"; }; phases = [ "unpackPhase" "installPhase" ]; diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix index 69d67ca205e2..6028e732c8fb 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix @@ -4,8 +4,8 @@ let mkTelegram = args: qt5.callPackage (import ./generic.nix args) { }; stableVersion = { stable = true; - version = "1.5.11"; - sha256Hash = "09blyzs6mrmrrmjcfia9pa35mfv4zfc9mrqc36hqqcchmg54kx6w"; + version = "1.5.15"; + sha256Hash = "09m9pcm0yd9x3vz22c7zn2xzcnqc7mkbml8xg1z608nnsd702c51"; # svn log svn://svn.archlinux.org/community/telegram-desktop/trunk archPatchesRevision = "429149"; archPatchesHash = "1ylpi9kb6hk27x9wmna4ing8vzn9b7247iya91pyxxrpxrcrhpli"; diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix index 3ba772eb0bfa..fb60b772e29d 100644 --- a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix +++ b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix @@ -41,9 +41,6 @@ in stdenv.mkDerivation { runtimeDependencies = optional pulseaudioSupport libpulseaudio; - # Don't remove runtimeDependencies from RPATH via patchelf --shrink-rpath - dontPatchELF = true; - installPhase = let files = concatStringsSep " " [ diff --git a/pkgs/applications/networking/syncthing/default.nix b/pkgs/applications/networking/syncthing/default.nix index 8fe9af549bf7..a2e38577ecdc 100644 --- a/pkgs/applications/networking/syncthing/default.nix +++ b/pkgs/applications/networking/syncthing/default.nix @@ -3,14 +3,14 @@ let common = { stname, target, postInstall ? "" }: buildGoPackage rec { - version = "1.0.0"; + version = "1.0.1"; name = "${stname}-${version}"; src = fetchFromGitHub { owner = "syncthing"; repo = "syncthing"; rev = "v${version}"; - sha256 = "1qkjnij9jw3d4pjkdr6npz5ps604qg6g36jnsng0k1r2qnrydnwh"; + sha256 = "09qrdh6rvphh6sjyzh3jjil1fkrp9jp8mzrbz9ncqhvqra70f6sw"; }; goPackagePath = "github.com/syncthing/syncthing"; diff --git a/pkgs/applications/office/trilium/default.nix b/pkgs/applications/office/trilium/default.nix index a72332f2f338..7ea4de464661 100644 --- a/pkgs/applications/office/trilium/default.nix +++ b/pkgs/applications/office/trilium/default.nix @@ -13,11 +13,11 @@ let in stdenv.mkDerivation rec { name = "trilium-${version}"; - version = "0.28.3"; + version = "0.29.1"; src = fetchurl { url = "https://github.com/zadam/trilium/releases/download/v${version}/trilium-linux-x64-${version}.tar.xz"; - sha256 = "0bg7fzb0drw6692hcskiwwd4d9s9547cqp3m1s4qj0y7ca3wrx8r"; + sha256 = "1yyd650l628x3kvyn73d5b35sj7ixmdlqkb6h1swdjp0z2n00w4w"; }; # Fetch from source repo, no longer included in release. diff --git a/pkgs/applications/misc/airspy/default.nix b/pkgs/applications/radio/airspy/default.nix similarity index 100% rename from pkgs/applications/misc/airspy/default.nix rename to pkgs/applications/radio/airspy/default.nix diff --git a/pkgs/applications/radio/aldo/default.nix b/pkgs/applications/radio/aldo/default.nix new file mode 100644 index 000000000000..fc38f6be4cca --- /dev/null +++ b/pkgs/applications/radio/aldo/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchurl, libao }: + +stdenv.mkDerivation rec { + pname = "aldo"; + version = "0.7.7"; + + src = fetchurl { + url = "mirror://savannah/${pname}/${pname}-${version}.tar.bz2"; + sha256 = "14lzgldqzbbzydsy1cai3wln3hpyj1yhj8ji3wygyzr616fq9f7i"; + }; + + buildInputs = [ libao ]; + + meta = with stdenv.lib; { + description = "Morse code training program"; + homepage = http://aldo.nongnu.org/; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ etu ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/radio/chirp/default.nix similarity index 100% rename from pkgs/applications/misc/chirp/default.nix rename to pkgs/applications/radio/chirp/default.nix diff --git a/pkgs/applications/misc/dmrconfig/default.nix b/pkgs/applications/radio/dmrconfig/default.nix similarity index 100% rename from pkgs/applications/misc/dmrconfig/default.nix rename to pkgs/applications/radio/dmrconfig/default.nix diff --git a/pkgs/applications/audio/fldigi/default.nix b/pkgs/applications/radio/fldigi/default.nix similarity index 100% rename from pkgs/applications/audio/fldigi/default.nix rename to pkgs/applications/radio/fldigi/default.nix diff --git a/pkgs/applications/misc/fllog/default.nix b/pkgs/applications/radio/fllog/default.nix similarity index 100% rename from pkgs/applications/misc/fllog/default.nix rename to pkgs/applications/radio/fllog/default.nix diff --git a/pkgs/applications/misc/flmsg/default.nix b/pkgs/applications/radio/flmsg/default.nix similarity index 100% rename from pkgs/applications/misc/flmsg/default.nix rename to pkgs/applications/radio/flmsg/default.nix diff --git a/pkgs/applications/misc/flrig/default.nix b/pkgs/applications/radio/flrig/default.nix similarity index 100% rename from pkgs/applications/misc/flrig/default.nix rename to pkgs/applications/radio/flrig/default.nix diff --git a/pkgs/applications/misc/flwrap/default.nix b/pkgs/applications/radio/flwrap/default.nix similarity index 100% rename from pkgs/applications/misc/flwrap/default.nix rename to pkgs/applications/radio/flwrap/default.nix diff --git a/pkgs/applications/misc/gnss-sdr/default.nix b/pkgs/applications/radio/gnss-sdr/default.nix similarity index 100% rename from pkgs/applications/misc/gnss-sdr/default.nix rename to pkgs/applications/radio/gnss-sdr/default.nix diff --git a/pkgs/applications/misc/gnuradio/ais.nix b/pkgs/applications/radio/gnuradio/ais.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/ais.nix rename to pkgs/applications/radio/gnuradio/ais.nix diff --git a/pkgs/applications/misc/gnuradio/default.nix b/pkgs/applications/radio/gnuradio/default.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/default.nix rename to pkgs/applications/radio/gnuradio/default.nix diff --git a/pkgs/applications/misc/gnuradio/gsm.nix b/pkgs/applications/radio/gnuradio/gsm.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/gsm.nix rename to pkgs/applications/radio/gnuradio/gsm.nix diff --git a/pkgs/applications/misc/gnuradio/limesdr.nix b/pkgs/applications/radio/gnuradio/limesdr.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/limesdr.nix rename to pkgs/applications/radio/gnuradio/limesdr.nix diff --git a/pkgs/applications/misc/gnuradio/nacl.nix b/pkgs/applications/radio/gnuradio/nacl.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/nacl.nix rename to pkgs/applications/radio/gnuradio/nacl.nix diff --git a/pkgs/applications/misc/gnuradio/osmosdr.nix b/pkgs/applications/radio/gnuradio/osmosdr.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/osmosdr.nix rename to pkgs/applications/radio/gnuradio/osmosdr.nix diff --git a/pkgs/applications/misc/gnuradio/rds.nix b/pkgs/applications/radio/gnuradio/rds.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/rds.nix rename to pkgs/applications/radio/gnuradio/rds.nix diff --git a/pkgs/applications/misc/gnuradio/wrapper.nix b/pkgs/applications/radio/gnuradio/wrapper.nix similarity index 100% rename from pkgs/applications/misc/gnuradio/wrapper.nix rename to pkgs/applications/radio/gnuradio/wrapper.nix diff --git a/pkgs/applications/misc/gqrx/default.nix b/pkgs/applications/radio/gqrx/default.nix similarity index 100% rename from pkgs/applications/misc/gqrx/default.nix rename to pkgs/applications/radio/gqrx/default.nix diff --git a/pkgs/applications/misc/hackrf/default.nix b/pkgs/applications/radio/hackrf/default.nix similarity index 100% rename from pkgs/applications/misc/hackrf/default.nix rename to pkgs/applications/radio/hackrf/default.nix diff --git a/pkgs/applications/misc/inspectrum/default.nix b/pkgs/applications/radio/inspectrum/default.nix similarity index 100% rename from pkgs/applications/misc/inspectrum/default.nix rename to pkgs/applications/radio/inspectrum/default.nix diff --git a/pkgs/tools/misc/kalibrate-hackrf/default.nix b/pkgs/applications/radio/kalibrate-hackrf/default.nix similarity index 100% rename from pkgs/tools/misc/kalibrate-hackrf/default.nix rename to pkgs/applications/radio/kalibrate-hackrf/default.nix diff --git a/pkgs/tools/misc/kalibrate-rtl/default.nix b/pkgs/applications/radio/kalibrate-rtl/default.nix similarity index 100% rename from pkgs/tools/misc/kalibrate-rtl/default.nix rename to pkgs/applications/radio/kalibrate-rtl/default.nix diff --git a/pkgs/applications/misc/limesuite/default.nix b/pkgs/applications/radio/limesuite/default.nix similarity index 91% rename from pkgs/applications/misc/limesuite/default.nix rename to pkgs/applications/radio/limesuite/default.nix index e1cdc4a0f863..ef9b28b36f82 100644 --- a/pkgs/applications/misc/limesuite/default.nix +++ b/pkgs/applications/radio/limesuite/default.nix @@ -4,7 +4,7 @@ } : let - version = "18.10.0"; + version = "19.01.0"; in stdenv.mkDerivation { name = "limesuite-${version}"; @@ -13,7 +13,7 @@ in stdenv.mkDerivation { owner = "myriadrf"; repo = "LimeSuite"; rev = "v${version}"; - sha256 = "0nbyvcdwvfvln1wic9qwb7y221v3jv454gp5v6ms9112a41zj46h"; + sha256 = "1r03kc1pvlhkvp19qbw7f5qzxx48z2v638f0xpawf6d1nwfky1n3"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/audio/minimodem/default.nix b/pkgs/applications/radio/minimodem/default.nix similarity index 100% rename from pkgs/applications/audio/minimodem/default.nix rename to pkgs/applications/radio/minimodem/default.nix diff --git a/pkgs/applications/misc/multimon-ng/default.nix b/pkgs/applications/radio/multimon-ng/default.nix similarity index 100% rename from pkgs/applications/misc/multimon-ng/default.nix rename to pkgs/applications/radio/multimon-ng/default.nix diff --git a/pkgs/applications/misc/qradiolink/default.nix b/pkgs/applications/radio/qradiolink/default.nix similarity index 100% rename from pkgs/applications/misc/qradiolink/default.nix rename to pkgs/applications/radio/qradiolink/default.nix diff --git a/pkgs/applications/misc/qsstv/default.nix b/pkgs/applications/radio/qsstv/default.nix similarity index 100% rename from pkgs/applications/misc/qsstv/default.nix rename to pkgs/applications/radio/qsstv/default.nix diff --git a/pkgs/applications/misc/rtl-sdr/default.nix b/pkgs/applications/radio/rtl-sdr/default.nix similarity index 100% rename from pkgs/applications/misc/rtl-sdr/default.nix rename to pkgs/applications/radio/rtl-sdr/default.nix diff --git a/pkgs/applications/misc/rtl_433/default.nix b/pkgs/applications/radio/rtl_433/default.nix similarity index 100% rename from pkgs/applications/misc/rtl_433/default.nix rename to pkgs/applications/radio/rtl_433/default.nix diff --git a/pkgs/applications/misc/soapyairspy/default.nix b/pkgs/applications/radio/soapyairspy/default.nix similarity index 100% rename from pkgs/applications/misc/soapyairspy/default.nix rename to pkgs/applications/radio/soapyairspy/default.nix diff --git a/pkgs/applications/misc/soapybladerf/default.nix b/pkgs/applications/radio/soapybladerf/default.nix similarity index 88% rename from pkgs/applications/misc/soapybladerf/default.nix rename to pkgs/applications/radio/soapybladerf/default.nix index bab829e05e3a..5472254b19dc 100644 --- a/pkgs/applications/misc/soapybladerf/default.nix +++ b/pkgs/applications/radio/soapybladerf/default.nix @@ -3,7 +3,7 @@ } : let - version = "0.4.0"; + version = "0.4.1"; in stdenv.mkDerivation { name = "soapybladerf-${version}"; @@ -12,7 +12,7 @@ in stdenv.mkDerivation { owner = "pothosware"; repo = "SoapyBladeRF"; rev = "soapy-bladerf-${version}"; - sha256 = "1gf1azfydw033nlg2bgs9cbsbp9npjdrgjwlsffn0d9x0qbgxjqp"; + sha256 = "02wh09850vinqg248fw4lxmx7y857cqmnnb8jm9zhyrsggal0hki"; }; nativeBuildInputs = [ cmake pkgconfig ]; diff --git a/pkgs/applications/misc/soapyhackrf/default.nix b/pkgs/applications/radio/soapyhackrf/default.nix similarity index 100% rename from pkgs/applications/misc/soapyhackrf/default.nix rename to pkgs/applications/radio/soapyhackrf/default.nix diff --git a/pkgs/applications/misc/soapyremote/default.nix b/pkgs/applications/radio/soapyremote/default.nix similarity index 87% rename from pkgs/applications/misc/soapyremote/default.nix rename to pkgs/applications/radio/soapyremote/default.nix index f6970c156b8f..a0057978ea33 100644 --- a/pkgs/applications/misc/soapyremote/default.nix +++ b/pkgs/applications/radio/soapyremote/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, cmake, soapysdr, avahi }: let - version = "0.5.0"; + version = "0.5.1"; in stdenv.mkDerivation { name = "soapyremote-${version}"; @@ -10,7 +10,7 @@ in stdenv.mkDerivation { owner = "pothosware"; repo = "SoapyRemote"; rev = "soapy-remote-${version}"; - sha256 = "1lyjhf934zap61ky7rbk46bp8s8sjk8sgdyszhryfyf571jv9b2i"; + sha256 = "1qlpjg8mh564q26mni8g6bb8w9nj7hgcq86278fszxpwpnk3jsvk"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/soapyrtlsdr/default.nix b/pkgs/applications/radio/soapyrtlsdr/default.nix similarity index 100% rename from pkgs/applications/misc/soapyrtlsdr/default.nix rename to pkgs/applications/radio/soapyrtlsdr/default.nix diff --git a/pkgs/applications/misc/soapysdr/default.nix b/pkgs/applications/radio/soapysdr/default.nix similarity index 100% rename from pkgs/applications/misc/soapysdr/default.nix rename to pkgs/applications/radio/soapysdr/default.nix diff --git a/pkgs/applications/misc/soapyuhd/default.nix b/pkgs/applications/radio/soapyuhd/default.nix similarity index 89% rename from pkgs/applications/misc/soapyuhd/default.nix rename to pkgs/applications/radio/soapyuhd/default.nix index 4f2a79c97fe2..f7c0f27160d2 100644 --- a/pkgs/applications/misc/soapyuhd/default.nix +++ b/pkgs/applications/radio/soapyuhd/default.nix @@ -3,7 +3,7 @@ } : let - version = "0.3.4"; + version = "0.3.5"; in stdenv.mkDerivation { name = "soapyuhd-${version}"; @@ -12,7 +12,7 @@ in stdenv.mkDerivation { owner = "pothosware"; repo = "SoapyUHD"; rev = "soapy-uhd-${version}"; - sha256 = "1da7cjcvfdqhgznm7x14s1h7lwz5lan1b48akw445ah1vxwvh4hl"; + sha256 = "07cr4zk42d0l5g03wm7dzl5lmqr104hmzp1fdjqa1z7xq4v9c9b1"; }; nativeBuildInputs = [ cmake pkgconfig ]; diff --git a/pkgs/applications/radio/tlf/default.nix b/pkgs/applications/radio/tlf/default.nix new file mode 100644 index 000000000000..92183306038b --- /dev/null +++ b/pkgs/applications/radio/tlf/default.nix @@ -0,0 +1,42 @@ +{ stdenv, fetchFromGitHub, autoreconfHook, autoconf, automake, pkgconfig, glib +, perl, ncurses, hamlib, xmlrpc_c }: + +stdenv.mkDerivation rec { + pname = "tlf"; + version = "1.3.2"; + + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = "${pname}-${version}"; + sha256 = "0gniysjm8aq5anq0a0az31vd6h1vyg56bifc7rpf53lsh9hkzmgc"; + }; + + nativeBuildInputs = [ autoreconfHook autoconf automake pkgconfig perl ]; + buildInputs = [ glib ncurses hamlib xmlrpc_c ]; + + configureFlags = [ "--enable-hamlib" "--enable-fldigi-xmlrpc" ]; + + postInstall = '' + mkdir -p $out/lib + + # Hack around lack of libtinfo in NixOS + ln -s ${ncurses.out}/lib/libncursesw.so.6 $out/lib/libtinfo.so.5 + ''; + + meta = with stdenv.lib; { + description = "Advanced ham radio logging and contest program"; + longDescription = '' + TLF is a curses based console mode general logging and contest program for + amateur radio. + + It supports the CQWW, the WPX, the ARRL-DX, the ARRL-FD, the PACC and the + EU SPRINT shortwave contests (single operator) as well as a LOT MORE basic + contests, general QSO and DXpedition mode. + ''; + homepage = https://tlf.github.io/; + license = licenses.gpl2; + maintainers = with maintainers; [ etu ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/tools/misc/uhd/default.nix b/pkgs/applications/radio/uhd/default.nix similarity index 100% rename from pkgs/development/tools/misc/uhd/default.nix rename to pkgs/applications/radio/uhd/default.nix diff --git a/pkgs/development/tools/misc/uhd/neon.patch b/pkgs/applications/radio/uhd/neon.patch similarity index 100% rename from pkgs/development/tools/misc/uhd/neon.patch rename to pkgs/applications/radio/uhd/neon.patch diff --git a/pkgs/applications/misc/unixcw/default.nix b/pkgs/applications/radio/unixcw/default.nix similarity index 100% rename from pkgs/applications/misc/unixcw/default.nix rename to pkgs/applications/radio/unixcw/default.nix diff --git a/pkgs/applications/misc/unixcw/remove-use-of-dlopen.patch b/pkgs/applications/radio/unixcw/remove-use-of-dlopen.patch similarity index 100% rename from pkgs/applications/misc/unixcw/remove-use-of-dlopen.patch rename to pkgs/applications/radio/unixcw/remove-use-of-dlopen.patch diff --git a/pkgs/applications/misc/urh/default.nix b/pkgs/applications/radio/urh/default.nix similarity index 100% rename from pkgs/applications/misc/urh/default.nix rename to pkgs/applications/radio/urh/default.nix diff --git a/pkgs/applications/misc/welle-io/default.nix b/pkgs/applications/radio/welle-io/default.nix similarity index 94% rename from pkgs/applications/misc/welle-io/default.nix rename to pkgs/applications/radio/welle-io/default.nix index fae591d7ee03..acf0226c0db5 100644 --- a/pkgs/applications/misc/welle-io/default.nix +++ b/pkgs/applications/radio/welle-io/default.nix @@ -40,7 +40,7 @@ in stdenv.mkDerivation { meta = with stdenv.lib; { description = "A DAB/DAB+ Software Radio"; homepage = https://www.welle.io/; - maintainers = with maintainers; [ ck3d ]; + maintainers = with maintainers; [ ck3d markuskowa ]; license = licenses.gpl2; platforms = with platforms; [ "x86_64-linux" "i686-linux" ] ++ darwin; }; diff --git a/pkgs/applications/misc/wsjtx/default.nix b/pkgs/applications/radio/wsjtx/default.nix similarity index 100% rename from pkgs/applications/misc/wsjtx/default.nix rename to pkgs/applications/radio/wsjtx/default.nix diff --git a/pkgs/applications/misc/wsjtx/super.patch b/pkgs/applications/radio/wsjtx/super.patch similarity index 100% rename from pkgs/applications/misc/wsjtx/super.patch rename to pkgs/applications/radio/wsjtx/super.patch diff --git a/pkgs/applications/misc/wsjtx/wsjtx.patch b/pkgs/applications/radio/wsjtx/wsjtx.patch similarity index 100% rename from pkgs/applications/misc/wsjtx/wsjtx.patch rename to pkgs/applications/radio/wsjtx/wsjtx.patch diff --git a/pkgs/applications/misc/xlog/default.nix b/pkgs/applications/radio/xlog/default.nix similarity index 100% rename from pkgs/applications/misc/xlog/default.nix rename to pkgs/applications/radio/xlog/default.nix diff --git a/pkgs/applications/science/machine-learning/sc2-headless/default.nix b/pkgs/applications/science/machine-learning/sc2-headless/default.nix index 517edd0d7799..7f5145d977c3 100644 --- a/pkgs/applications/science/machine-learning/sc2-headless/default.nix +++ b/pkgs/applications/science/machine-learning/sc2-headless/default.nix @@ -14,12 +14,12 @@ if !licenseAccepted then throw '' else assert licenseAccepted; let maps = callPackage ./maps.nix {}; in stdenv.mkDerivation rec { - version = "3.17"; + version = "4.7.1"; name = "sc2-headless-${version}"; src = fetchurl { url = "https://blzdistsc2-a.akamaihd.net/Linux/SC2.${version}.zip"; - sha256 = "1biyxpf7n95hali1pw30h91rhzrj6sbwrx6s52d00mlnwdhmf2v0"; + sha256 = "0q1ry9bd3dm8y4hvh57yfq7s05hl2k2sxi2wsl6h0r3w690v1kdd"; }; unpackCmd = '' diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index a21c21130d55..4ef88e34f032 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -105,6 +105,12 @@ stdenv.mkDerivation rec { sha256 = "1n5c61mvhalcr2wbp66wzsynwwk59aakvx3xqa5zw9nlkx3rd0h1"; }) + # https://trac.sagemath.org/ticket/27061 + (fetchpatch { + name = "numpy-1.16-inline-fortran.patch"; + url = "https://git.sagemath.org/sage.git/patch?id=a05b6b038e1571ab15464e98f76d1927c0c3fd12"; + sha256 = "05yq97pq84xi60wb1p9skrad5h5x770gq98ll4frr7hvvmlwsf58"; + }) ]; patches = nixPatches ++ packageUpgradePatches; diff --git a/pkgs/applications/version-management/git-and-tools/default.nix b/pkgs/applications/version-management/git-and-tools/default.nix index 9ee5df118308..e7199543ad74 100644 --- a/pkgs/applications/version-management/git-and-tools/default.nix +++ b/pkgs/applications/version-management/git-and-tools/default.nix @@ -38,6 +38,8 @@ let git-fame = callPackage ./git-fame {}; + gita = callPackage ./gita {}; + # The full-featured Git. gitFull = gitBase.override { svnSupport = true; diff --git a/pkgs/applications/version-management/git-and-tools/gita/default.nix b/pkgs/applications/version-management/git-and-tools/gita/default.nix new file mode 100644 index 000000000000..6979a47cdfc1 --- /dev/null +++ b/pkgs/applications/version-management/git-and-tools/gita/default.nix @@ -0,0 +1,24 @@ +{ lib, python3Packages }: + +python3Packages.buildPythonApplication rec { + version = "0.7.3"; + pname = "gita"; + + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "0ccqjf288513im7cvafiw4ypbp9s3z0avyzd4jzr13m38jrsss3r"; + }; + + propagatedBuildInputs = with python3Packages; [ + pyyaml + ]; + + doCheck = false; # Releases don't include tests + + meta = with lib; { + description = "A command-line tool to manage multiple git repos"; + homepage = https://github.com/nosarthur/gita; + license = licenses.mit; + maintainers = with maintainers; [ seqizz ]; + }; +} diff --git a/pkgs/applications/version-management/git-and-tools/qgit/default.nix b/pkgs/applications/version-management/git-and-tools/qgit/default.nix index 0a88fbd09291..0074d44391ef 100644 --- a/pkgs/applications/version-management/git-and-tools/qgit/default.nix +++ b/pkgs/applications/version-management/git-and-tools/qgit/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { license = licenses.gpl2; homepage = http://libre.tibirna.org/projects/qgit/wiki/QGit; description = "Graphical front-end to Git"; - maintainers = with maintainers; [ peterhoeg ]; + maintainers = with maintainers; [ peterhoeg markuskowa ]; inherit (qtbase.meta) platforms; }; } diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix index f616ca429830..e7c8a302c273 100644 --- a/pkgs/applications/virtualization/docker/default.nix +++ b/pkgs/applications/virtualization/docker/default.nix @@ -199,11 +199,11 @@ rec { # https://github.com/docker/docker-ce/tree/v${version}/components/engine/hack/dockerfile/install/* docker_18_09 = dockerGen rec { - version = "18.09.1"; - rev = "4c52b901c6cb019f7552cd93055f9688c6538be4"; # git commit - sha256 = "0q2789afx07pkisgp9iqrbac5k7xca54w1an4mf5mw34xn8yc4xc"; - runcRev = "96ec2177ae841256168fcf76954f7177af9446eb"; - runcSha256 = "1qr9msx6vs37jr0rk3r8x2q51fsk50c78a3999kd0snjy9bxmfhd"; + version = "18.09.2"; + rev = "62479626f213818ba5b4565105a05277308587d5"; # git commit + sha256 = "05kvpy1c4g661xfds6dfzb8r5q76ndblxjykfj06had18pv0xxd4"; + runcRev = "09c8266bf2fcf9519a651b04ae54c967b9ab86ec"; + runcSha256 = "08h45vs1f25byapqzy6x42r86m232z166v6z81gc2a3id8v0nzia"; containerdRev = "9754871865f7fe2f4e74d43e2fc7ccd237edcbce"; containerdSha256 = "065snv0s3v3z0ghadlii4w78qnhchcbx2kfdrvm8fk8gb4pkx1ya"; tiniRev = "fec3683b971d9c3ef73f284f176672c44b448662"; diff --git a/pkgs/applications/window-managers/sway/beta.nix b/pkgs/applications/window-managers/sway/beta.nix index 8b2acc94ea08..96e919df5a69 100644 --- a/pkgs/applications/window-managers/sway/beta.nix +++ b/pkgs/applications/window-managers/sway/beta.nix @@ -10,15 +10,19 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "sway"; - version = "1.0-rc1"; + version = "1.0-rc2"; src = fetchFromGitHub { owner = "swaywm"; repo = "sway"; rev = version; - sha256 = "1zigx2yz0i91iz2r2l6csq33hscaybmaq1p19jgxrazms7z213mz"; + sha256 = "052if3nagmwg5zh79nhrq75fbc9v2x950lcs1mal52p801qiv8f1"; }; + postPatch = '' + sed -iE "s/version: '1.0',/version: '${version}',/" meson.build + ''; + nativeBuildInputs = [ pkgconfig meson ninja ] ++ stdenv.lib.optional buildDocs scdoc; @@ -32,8 +36,8 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; mesonFlags = [ - "-Dsway-version=${version}" "-Dxwayland=enabled" "-Dgdk-pixbuf=enabled" - "-Dman-pages=enabled" "-Dtray=enabled" + "-Dxwayland=enabled" "-Dgdk-pixbuf=enabled" "-Dman-pages=enabled" + "-Dtray=enabled" ]; meta = with stdenv.lib; { diff --git a/pkgs/build-support/setup-hooks/make-wrapper.sh b/pkgs/build-support/setup-hooks/make-wrapper.sh index bc12be0fa36c..06891893e8c1 100644 --- a/pkgs/build-support/setup-hooks/make-wrapper.sh +++ b/pkgs/build-support/setup-hooks/make-wrapper.sh @@ -8,7 +8,7 @@ assertExecutable() { } # construct an executable file that wraps the actual executable -# makeWrapper EXECUTABLE ARGS +# makeWrapper EXECUTABLE OUT_PATH ARGS # ARGS: # --argv0 NAME : set name of executed process to NAME diff --git a/pkgs/build-support/trivial-builders.nix b/pkgs/build-support/trivial-builders.nix index 7543433640a3..454ef8912b3b 100644 --- a/pkgs/build-support/trivial-builders.nix +++ b/pkgs/build-support/trivial-builders.nix @@ -258,15 +258,17 @@ rec { * Example: * * # Symlinks hello path in store to current $out/hello - * linkFarm "hello" entries = [ { name = "hello"; path = pkgs.hello; } ]; + * linkFarm "hello" [ { name = "hello"; path = pkgs.hello; } ]; * */ - linkFarm = name: entries: runCommand name { preferLocalBuild = true; } - ("mkdir -p $out; cd $out; \n" + - (lib.concatMapStrings (x: '' - mkdir -p "$(dirname '${x.name}')" - ln -s '${x.path}' '${x.name}' - '') entries)); + linkFarm = name: entries: runCommand name { preferLocalBuild = true; allowSubstitutes = false; } + ''mkdir -p $out + cd $out + ${lib.concatMapStrings (x: '' + mkdir -p "$(dirname ${lib.escapeShellArg x.name})" + ln -s ${lib.escapeShellArg x.path} ${lib.escapeShellArg x.name} + '') entries} + ''; /* Print an error message if the file with the specified name and diff --git a/pkgs/data/fonts/agave/default.nix b/pkgs/data/fonts/agave/default.nix index 6aabf4f485da..eb18f620a2ad 100644 --- a/pkgs/data/fonts/agave/default.nix +++ b/pkgs/data/fonts/agave/default.nix @@ -1,20 +1,21 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "agave-${version}"; - version = "008"; + pname = "agave"; + version = "009"; src = fetchurl { - url = "https://github.com/agarick/agave/releases/download/v${version}/${name}.tar.gz"; - sha256 = "0g50mqpffn4dq761vibaf8dwfkbcl5da1cc89qz6pq35ircipbns"; + url = "https://github.com/agarick/agave/releases/download/v${version}/agave-r.ttf"; + sha256 = "05766gp2glm1p2vknk1nncxigq28hg8s58kjwsbn8zpwy8ivywpk"; }; sourceRoot = "."; + unpackPhase = ":"; dontBuild = true; installPhase = '' mkdir -p $out/share/fonts/truetype - cp *.ttf $out/share/fonts/truetype + cp $src $out/share/fonts/truetype/ ''; meta = with stdenv.lib; { diff --git a/pkgs/data/fonts/iosevka/bin.nix b/pkgs/data/fonts/iosevka/bin.nix index 529a727d6c0f..4adb0928d4fa 100644 --- a/pkgs/data/fonts/iosevka/bin.nix +++ b/pkgs/data/fonts/iosevka/bin.nix @@ -1,7 +1,7 @@ { stdenv, fetchzip }: let - version = "2.0.2"; + version = "2.1.0"; in fetchzip rec { name = "iosevka-bin-${version}"; @@ -12,7 +12,7 @@ in fetchzip rec { unzip -j $downloadedFile \*.ttc -d $out/share/fonts/iosevka ''; - sha256 = "0jr9d02dk4zbq3kyhpfs6gyynwss60210pc1dfxn0qbw3j9ch2l4"; + sha256 = "0hx91pdkiw0qvkkl7qnl78p5afldcmn18l5m1iclldnvrghrxizz"; meta = with stdenv.lib; { homepage = https://be5invis.github.io/Iosevka/; diff --git a/pkgs/misc/themes/greybird/default.nix b/pkgs/data/themes/greybird/default.nix similarity index 84% rename from pkgs/misc/themes/greybird/default.nix rename to pkgs/data/themes/greybird/default.nix index 8cc1a6415fbe..02c8d2b64901 100644 --- a/pkgs/misc/themes/greybird/default.nix +++ b/pkgs/data/themes/greybird/default.nix @@ -1,15 +1,14 @@ { stdenv, fetchFromGitHub, autoreconfHook, which, sassc, glib, libxml2, gdk_pixbuf, librsvg, gtk-engine-murrine }: stdenv.mkDerivation rec { - name = "${pname}-${version}"; pname = "greybird"; - version = "3.22.9"; + version = "3.22.10"; src = fetchFromGitHub { owner = "shimmerproject"; - repo = "${pname}"; + repo = pname; rev = "v${version}"; - sha256 = "0mixs47v0jvqpmfsv0k0d0l24y4w35krah8mgnwamr0b8spmazz3"; + sha256 = "1g1mnzxqwlbymq8npd2j294f8dzf9fw9nicd4pajmscg2vk71da9"; }; nativeBuildInputs = [ diff --git a/pkgs/misc/themes/zuki/default.nix b/pkgs/data/themes/zuki/default.nix similarity index 80% rename from pkgs/misc/themes/zuki/default.nix rename to pkgs/data/themes/zuki/default.nix index 2c293ecbc4ac..5e4e439f2afd 100644 --- a/pkgs/misc/themes/zuki/default.nix +++ b/pkgs/data/themes/zuki/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub, gdk_pixbuf, librsvg, gtk-engine-murrine }: stdenv.mkDerivation rec { - name = "zuki-themes-${version}"; - version = "3.28-3"; + pname = "zuki-themes"; + version = "3.30-1"; src = fetchFromGitHub { owner = "lassekongo83"; - repo = "zuki-themes"; + repo = pname; rev = "v${version}"; - sha256 = "0sgp41fpd8lyyb0v82y41v3hmb0ayv3zqqrv0m3ln0dzkr7ym9g7"; + sha256 = "0d7i0jhjiarqnwkc1k505bw8r9bvbwk3x8yzqmc3vnwcd7mr3m9x"; }; buildInputs = [ gdk_pixbuf librsvg ]; diff --git a/pkgs/desktops/gnome-3/core/epiphany/default.nix b/pkgs/desktops/gnome-3/core/epiphany/default.nix index 283101247181..c8ca0016d57d 100644 --- a/pkgs/desktops/gnome-3/core/epiphany/default.nix +++ b/pkgs/desktops/gnome-3/core/epiphany/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { name = "epiphany-${version}"; - version = "3.30.2"; + version = "3.30.3"; src = fetchurl { url = "mirror://gnome/sources/epiphany/${stdenv.lib.versions.majorMinor version}/${name}.tar.xz"; - sha256 = "0141bb37nd8wc743g4wy491crjh6ig76ack07aj2ba4z3gjz2zlc"; + sha256 = "05qdzx18ld1m3xiajpz6y6snfj56bgyjsgm7f4rqrnpjdbdvikbn"; }; # Tests need an X display diff --git a/pkgs/desktops/gnome-3/default.nix b/pkgs/desktops/gnome-3/default.nix index 7c028656faec..34b3faf71a41 100644 --- a/pkgs/desktops/gnome-3/default.nix +++ b/pkgs/desktops/gnome-3/default.nix @@ -19,7 +19,7 @@ lib.makeScope pkgs.newScope (self: with self; { in lib.filter (x: !(builtins.elem (pkgName x) namesToRemove)) packages; - maintainers = with pkgs.lib.maintainers; [ lethalman jtojnar hedning ]; + maintainers = with pkgs.lib.maintainers; [ lethalman jtojnar hedning worldofpeace ]; corePackages = with gnome3; [ pkgs.desktop-file-utils diff --git a/pkgs/desktops/xfce4-13/tumbler/default.nix b/pkgs/desktops/xfce4-13/tumbler/default.nix index 15b41f090af5..05a4f4ecde3c 100644 --- a/pkgs/desktops/xfce4-13/tumbler/default.nix +++ b/pkgs/desktops/xfce4-13/tumbler/default.nix @@ -6,9 +6,9 @@ mkXfceDerivation rec { category = "xfce"; pname = "tumbler"; - version = "0.2.1"; + version = "0.2.3"; - sha256 = "0vgk3s6jnsrs8bawrfc11s8nwsm4jvcl3aidbaznk52g97xiyxz0"; + sha256 = "1gb4dav6q9bn64c2ayi4896cr79lb8k63ja2sm3lwsjxgg1r4hw9"; buildInputs = [ gdk_pixbuf ffmpegthumbnailer libgsf poppler ]; } diff --git a/pkgs/development/compilers/gambit/bootstrap.nix b/pkgs/development/compilers/gambit/bootstrap.nix index aae7c61c6f9f..65cd67f527d4 100644 --- a/pkgs/development/compilers/gambit/bootstrap.nix +++ b/pkgs/development/compilers/gambit/bootstrap.nix @@ -1,13 +1,12 @@ -{ stdenv, fetchurl, autoconf, git, ... }: +{ stdenv, fetchurl, autoconf, ... }: stdenv.mkDerivation rec { name = "gambit-bootstrap-${version}"; - version = "4.9.2"; - tarball_version = "v4_9_2"; + version = "4.9.3"; src = fetchurl { - url = "http://www.iro.umontreal.ca/~gambit/download/gambit/v4.9/source/gambit-${tarball_version}.tgz"; - sha256 = "1cpganh3jgjdw6qsapcbwxdbp1xwgx5gvdl4ymwf8p2c5k018dwy"; + url = "http://www.iro.umontreal.ca/~gambit/download/gambit/v4.9/source/gambit-v4_9_3.tgz"; + sha256 = "1p6172vhcrlpjgia6hsks1w4fl8rdyjf9xjh14wxfkv7dnx8a5hk"; }; buildInputs = [ autoconf ]; diff --git a/pkgs/development/compilers/gambit/default.nix b/pkgs/development/compilers/gambit/default.nix index 275d4785a2ca..303f6a30aadb 100644 --- a/pkgs/development/compilers/gambit/default.nix +++ b/pkgs/development/compilers/gambit/default.nix @@ -1,10 +1,10 @@ { stdenv, callPackage, fetchurl }: callPackage ./build.nix { - version = "4.9.2"; + version = "4.9.3"; src = fetchurl { - url = "http://www.iro.umontreal.ca/~gambit/download/gambit/v4.9/source/gambit-v4_9_2-devel.tgz"; - sha256 = "1xpjm3m1pxwj3n0g36lbb3p6wx2nc1iry95xc22pnq3m2374gjxv"; + url = "http://www.iro.umontreal.ca/~gambit/download/gambit/v4.9/source/gambit-v4_9_3.tgz"; + sha256 = "1p6172vhcrlpjgia6hsks1w4fl8rdyjf9xjh14wxfkv7dnx8a5hk"; }; inherit stdenv; } diff --git a/pkgs/development/compilers/gambit/unstable.nix b/pkgs/development/compilers/gambit/unstable.nix index a907de017408..5788f0df1da9 100644 --- a/pkgs/development/compilers/gambit/unstable.nix +++ b/pkgs/development/compilers/gambit/unstable.nix @@ -1,13 +1,13 @@ { stdenv, callPackage, fetchFromGitHub }: callPackage ./build.nix { - version = "unstable-2019-01-18"; -# git-version = "4.9.2"; + version = "unstable-2019-02-05"; +# git-version = "4.9.3"; src = fetchFromGitHub { owner = "feeley"; repo = "gambit"; - rev = "cf5688ecf35d85b9355c645f535c1e057b3064e7"; - sha256 = "1xr7j4iws6hlrdbvlii4n98apr78k4adbnmy4ggzyik65bynh1kl"; + rev = "baf7de67f6d800821412fe83a8d9e9e09faeb490"; + sha256 = "0ygm5y8fvq6dbb8mwq52v8rc8pdnwm4qpmxlnx5m9hzzbm1kzxxv"; }; inherit stdenv; } diff --git a/pkgs/development/compilers/gerbil/default.nix b/pkgs/development/compilers/gerbil/default.nix index d2740354e923..8c6b1a87cd37 100644 --- a/pkgs/development/compilers/gerbil/default.nix +++ b/pkgs/development/compilers/gerbil/default.nix @@ -1,14 +1,14 @@ { stdenv, callPackage, fetchFromGitHub, gambit }: callPackage ./build.nix rec { - version = "0.15"; - git-version = "0.15"; + version = "0.15.1"; + git-version = "0.15.1"; inherit gambit; src = fetchFromGitHub { owner = "vyzo"; repo = "gerbil"; rev = "v${version}"; - sha256 = "1ff1gpl0bl1pbs68bxax82ikw4bzbkrj4a6l775ziwyfndjggl66"; + sha256 = "0qpqms66hz41wwhxb1z0fnzj96ivkm7qi9h9d7lhlr3fsxm1kp1n"; }; inherit stdenv; } diff --git a/pkgs/development/compilers/gerbil/unstable.nix b/pkgs/development/compilers/gerbil/unstable.nix index b96ff53b56c2..6e60ea6fea49 100644 --- a/pkgs/development/compilers/gerbil/unstable.nix +++ b/pkgs/development/compilers/gerbil/unstable.nix @@ -1,14 +1,14 @@ { stdenv, callPackage, fetchFromGitHub, gambit-unstable }: callPackage ./build.nix { - version = "unstable-2019-01-25"; - git-version = "0.15"; + version = "unstable-2019-02-09"; + git-version = "0.16-DEV-15-gafc20fc2"; gambit = gambit-unstable; src = fetchFromGitHub { owner = "vyzo"; repo = "gerbil"; - rev = "8c1aa2ca129a380de9cf668a7f3f6d56e56cbf94"; - sha256 = "1ff1gpl0bl1pbs68bxax82ikw4bzbkrj4a6l775ziwyfndjggl66"; + rev = "afc20fc21030e8445b46b8267cc4c52cfd662aad"; + sha256 = "02v16zya9zryjs4wallibp1kvnpba60aw15y4k7zhddc71qjfbhw"; }; inherit stdenv; } diff --git a/pkgs/development/compilers/ghc/8.6.3.nix b/pkgs/development/compilers/ghc/8.6.3.nix index 4e1f0dd9fc72..c57e4d96ae2e 100644 --- a/pkgs/development/compilers/ghc/8.6.3.nix +++ b/pkgs/development/compilers/ghc/8.6.3.nix @@ -6,6 +6,9 @@ , libiconv ? null, ncurses +, # GHC can be built with system libffi or a bundled one. + libffi ? null + , useLLVM ? !stdenv.targetPlatform.isx86 || (stdenv.targetPlatform.isMusl && stdenv.hostPlatform != stdenv.targetPlatform) , # LLVM is conceptually a run-time-only depedendency, but for # non-x86, we need LLVM to bootstrap later stages, so it becomes a @@ -65,6 +68,7 @@ let # Splicer will pull out correct variations libDeps = platform: stdenv.lib.optional enableTerminfo [ ncurses ] + ++ [libffi] ++ stdenv.lib.optional (!enableIntegerSimple) gmp ++ stdenv.lib.optional (platform.libc != "glibc" && !targetPlatform.isWindows) libiconv; @@ -149,6 +153,7 @@ stdenv.mkDerivation (rec { configureFlags = [ "--datadir=$doc/share/doc/ghc" "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib" + ] ++ stdenv.lib.optionals (libffi != null) ["--with-system-libffi" "--with-ffi-includes=${libffi}/include" "--with-ffi-libraries=${libffi}/lib" ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && !enableIntegerSimple) [ "--with-gmp-includes=${targetPackages.gmp.dev}/include" "--with-gmp-libraries=${targetPackages.gmp.out}/lib" ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc" && !targetPlatform.isWindows) [ diff --git a/pkgs/development/compilers/llvm/7/clang/default.nix b/pkgs/development/compilers/llvm/7/clang/default.nix index a307978f59a5..bc6767e8766e 100644 --- a/pkgs/development/compilers/llvm/7/clang/default.nix +++ b/pkgs/development/compilers/llvm/7/clang/default.nix @@ -43,6 +43,9 @@ let sed -i '1s,^,find_package(Sphinx REQUIRED)\n,' docs/CMakeLists.txt '' + stdenv.lib.optionalString stdenv.hostPlatform.isMusl '' sed -i -e 's/lgcc_s/lgcc_eh/' lib/Driver/ToolChains/*.cpp + '' + stdenv.lib.optionalString stdenv.hostPlatform.isDarwin '' + substituteInPlace tools/extra/clangd/CMakeLists.txt \ + --replace "NOT HAVE_CXX_ATOMICS64_WITHOUT_LIB" FALSE ''; outputs = [ "out" "lib" "python" ]; diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index c75ca32410c9..4391f7b6f46a 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -1151,11 +1151,8 @@ self: super: { }; }; - # https://github.com/kcsongor/generic-lens/pull/60 - generic-lens = appendPatch super.generic-lens (pkgs.fetchpatch { - url = https://github.com/kcsongor/generic-lens/commit/d9af1ec22785d6c21e928beb88fc3885c6f05bed.patch; - sha256 = "0ljwcha9l52gs5bghxq3gbzxfqmfz3hxxcg9arjsjw8f7kw946xq"; - }); + # https://github.com/kcsongor/generic-lens/pull/65 + generic-lens = dontCheck super.generic-lens; xmonad-extras = doJailbreak super.xmonad-extras; diff --git a/pkgs/development/libraries/aubio/default.nix b/pkgs/development/libraries/aubio/default.nix index e6c4a8e00895..db5ecf3b0169 100644 --- a/pkgs/development/libraries/aubio/default.nix +++ b/pkgs/development/libraries/aubio/default.nix @@ -3,11 +3,11 @@ }: stdenv.mkDerivation rec { - name = "aubio-0.4.8"; + name = "aubio-0.4.9"; src = fetchurl { url = "https://aubio.org/pub/${name}.tar.bz2"; - sha256 = "1fjbz1l9axscrb7dl6jv4ifhvmq1g77ihvg0bbwwfg0j3qz4gxyw"; + sha256 = "1npks71ljc48w6858l9bq30kaf5nph8z0v61jkfb70xb9np850nl"; }; nativeBuildInputs = [ pkgconfig python wafHook ]; diff --git a/pkgs/development/libraries/boehm-gc/7.6.6.nix b/pkgs/development/libraries/boehm-gc/7.6.6.nix index da71e40187f4..68f5d7afcf49 100644 --- a/pkgs/development/libraries/boehm-gc/7.6.6.nix +++ b/pkgs/development/libraries/boehm-gc/7.6.6.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { separateDebugInfo = stdenv.isLinux; preConfigure = stdenv.lib.optionalString (stdenv.hostPlatform.libc == "musl") '' - export NIX_CFLAGS_COMPILE+="-D_GNU_SOURCE -DUSE_MMAP -DHAVE_DL_ITERATE_PHDR" + export NIX_CFLAGS_COMPILE+=" -D_GNU_SOURCE -DUSE_MMAP -DHAVE_DL_ITERATE_PHDR" ''; patches = [ (fetchpatch { diff --git a/pkgs/development/libraries/boehm-gc/default.nix b/pkgs/development/libraries/boehm-gc/default.nix index 399581400a0c..d6f7b46079f6 100644 --- a/pkgs/development/libraries/boehm-gc/default.nix +++ b/pkgs/development/libraries/boehm-gc/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { separateDebugInfo = stdenv.isLinux; preConfigure = stdenv.lib.optionalString (stdenv.hostPlatform.libc == "musl") '' - export NIX_CFLAGS_COMPILE+="-D_GNU_SOURCE -DUSE_MMAP -DHAVE_DL_ITERATE_PHDR" + export NIX_CFLAGS_COMPILE+=" -D_GNU_SOURCE -DUSE_MMAP -DHAVE_DL_ITERATE_PHDR" ''; patches = diff --git a/pkgs/development/libraries/libpqxx/default.nix b/pkgs/development/libraries/libpqxx/default.nix index 4aa06c0cd704..f88543744da0 100644 --- a/pkgs/development/libraries/libpqxx/default.nix +++ b/pkgs/development/libraries/libpqxx/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, fetchFromGitHub, postgresql, doxygen, xmlto, python2, gnused }: stdenv.mkDerivation rec { - name = "libpqxx-${version}"; - version = "6.2.5"; + pname = "libpqxx"; + version = "6.3.1"; src = fetchFromGitHub { owner = "jtv"; - repo = "libpqxx"; + repo = pname; rev = version; - sha256 = "15x9xlj2v66w81j90cb438qkrrcqaq4dqrvhllwyqfz4lprqnhh9"; + sha256 = "15na6iq4mspfa5vgayqzs0wqkqq9nk23d05qwn6xc3gpna2kyqsv"; }; nativeBuildInputs = [ gnused python2 ]; diff --git a/pkgs/development/libraries/libu2f-host/default.nix b/pkgs/development/libraries/libu2f-host/default.nix index a622f45ca5bf..8430c462ca6e 100644 --- a/pkgs/development/libraries/libu2f-host/default.nix +++ b/pkgs/development/libraries/libu2f-host/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, json_c, hidapi }: stdenv.mkDerivation rec { - name = "libu2f-host-1.1.6"; + name = "libu2f-host-1.1.7"; src = fetchurl { url = "https://developers.yubico.com/libu2f-host/Releases/${name}.tar.xz"; - sha256 = "19xxwwqfzg3njfpxvhlyxd05wjwsdw3m4lpn7gk31cna6agbp82d"; + sha256 = "1zyws91b1fsbfwn3f23ry9a9zr0i1a1hqmhk3v1qnlvp56gjayli"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/libwnck/3.x.nix b/pkgs/development/libraries/libwnck/3.x.nix index e4bbeacb3624..9c35d3373505 100644 --- a/pkgs/development/libraries/libwnck/3.x.nix +++ b/pkgs/development/libraries/libwnck/3.x.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, pkgconfig, libX11, gtk3, intltool, gobject-introspection, gnome3}: +{ stdenv, fetchurl, pkgconfig, libX11, gtk3, intltool, gobject-introspection, gnome3 }: let pname = "libwnck"; @@ -33,6 +33,6 @@ in stdenv.mkDerivation rec{ description = "Library to manage X windows and workspaces (via pagers, tasklists, etc.)"; license = licenses.lgpl21Plus; platforms = platforms.linux; - maintainers = []; + maintainers = [ maintainers.worldofpeace ]; }; } diff --git a/pkgs/development/libraries/odpic/default.nix b/pkgs/development/libraries/odpic/default.nix index 2715ff4dfaff..931ecc186be6 100644 --- a/pkgs/development/libraries/odpic/default.nix +++ b/pkgs/development/libraries/odpic/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "odpic-${version}"; - version = "2.4.2"; + version = "3.1.0"; src = fetchurl { url = "https://github.com/oracle/odpi/archive/v${version}.tar.gz"; - sha256 = "0hw6b38vnh0cgm1iwpgkqa2am86baal6irp9bglacblwh8sshqdi"; + sha256 = "0m6g7lbvfir4amf2cnap9wz9fmqrihqpihd84igrd7fp076894c0"; }; nativeBuildInputs = stdenv.lib.optional stdenv.isDarwin [ fixDarwinDylibNames ]; diff --git a/pkgs/development/libraries/science/math/nccl/default.nix b/pkgs/development/libraries/science/math/nccl/default.nix index d3c20258425b..badd08291de4 100644 --- a/pkgs/development/libraries/science/math/nccl/default.nix +++ b/pkgs/development/libraries/science/math/nccl/default.nix @@ -1,24 +1,44 @@ -{ callPackage, cudatoolkit_8, cudatoolkit_9 }: +{ stdenv, fetchFromGitHub, which, cudatoolkit }: -let - generic = args: callPackage (import ./generic.nix (removeAttrs args ["cudatoolkit"])) { - inherit (args) cudatoolkit; +stdenv.mkDerivation rec { + name = "nccl-${version}-cuda-${cudatoolkit.majorVersion}"; + version = "2.4.2-1"; + + src = fetchFromGitHub { + owner = "NVIDIA"; + repo = "nccl"; + rev = "v${version}"; + sha256 = "0aa4gv51nbmmdhx6vp40l249m4arp30sijrn6kwxdfi1k9kajiq5"; }; -in + outputs = [ "out" "dev" ]; -{ - nccl_cudatoolkit_8 = generic rec { - version = "2.1.4"; - cudatoolkit = cudatoolkit_8; - srcName = "nccl_${version}-1+cuda${cudatoolkit.majorVersion}_x86_64.txz"; - sha256 = "1lwwm8kdhna5m318yg304kl2gsz1jwhv4zv4gn8av2m57zh848zi"; - }; + nativeBuildInputs = [ which ]; - nccl_cudatoolkit_9 = generic rec { - version = "2.1.4"; - cudatoolkit = cudatoolkit_9; - srcName = "nccl_${version}-1+cuda${cudatoolkit.majorVersion}_x86_64.txz"; - sha256 = "0pajmqzkacpszs63jh2hw2qqc49kj75kcf7r0ky8hdh560q8xn0p"; + buildInputs = [ cudatoolkit ]; + + preConfigure = '' + patchShebangs src/collectives/device/gen_rules.sh + ''; + + makeFlags = [ + "CUDA_HOME=${cudatoolkit}" + "PREFIX=$(out)" + ]; + + postFixup = '' + moveToOutput lib/libnccl_static.a $dev + ''; + + NIX_CFLAGS_COMPILE = [ "-Wno-unused-function" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Multi-GPU and multi-node collective communication primitives for NVIDIA GPUs"; + homepage = https://developer.nvidia.com/nccl; + license = licenses.bsd3; + platforms = [ "x86_64-linux" ]; + maintainers = with maintainers; [ mdaiter orivej ]; }; } diff --git a/pkgs/development/libraries/science/math/nccl/generic.nix b/pkgs/development/libraries/science/math/nccl/generic.nix deleted file mode 100644 index 609a7df51e58..000000000000 --- a/pkgs/development/libraries/science/math/nccl/generic.nix +++ /dev/null @@ -1,57 +0,0 @@ -{ version -, srcName -, sha256 -}: - -{ stdenv -, lib -, requireFile -, cudatoolkit -}: - -stdenv.mkDerivation rec { - name = "cudatoolkit-${cudatoolkit.majorVersion}-nccl-${version}"; - - inherit version; - - src = requireFile rec { - name = srcName; - inherit sha256; - message = '' - This nix expression requires that ${name} is already part of the store. - Register yourself to NVIDIA Accelerated Computing Developer Program, retrieve the NCCL library - at https://developer.nvidia.com/nccl, and run the following command in the download directory: - nix-prefetch-url file://\$PWD/${name} - ''; - }; - - unpackCmd = "tar xJf $src"; - - installPhase = '' - function fixRunPath { - p=$(patchelf --print-rpath $1) - patchelf --set-rpath "$p:${lib.makeLibraryPath [ stdenv.cc.cc ]}" $1 - } - fixRunPath lib/libnccl.so - - mkdir -p $out - cp -a include $out/include - cp -a lib $out/lib - ''; - - propagatedBuildInputs = [ - cudatoolkit - ]; - - passthru = { - inherit cudatoolkit; - }; - - meta = with stdenv.lib; { - description = "Multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs"; - homepage = https://developer.nvidia.com/nccl; - license = licenses.unfree; - platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ mdaiter ]; - }; -} diff --git a/pkgs/development/libraries/science/math/openblas/default.nix b/pkgs/development/libraries/science/math/openblas/default.nix index 55fc3f750df3..68439f5921d8 100644 --- a/pkgs/development/libraries/science/math/openblas/default.nix +++ b/pkgs/development/libraries/science/math/openblas/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, fetchpatch, gfortran, perl, which, config, coreutils +{ stdenv, fetchFromGitHub, fetchpatch, gfortran, perl, which, config # Most packages depending on openblas expect integer width to match # pointer width, but some expect to use 32-bit integers always # (for compatibility with reference BLAS). @@ -107,19 +107,17 @@ stdenv.mkDerivation rec { which buildPackages.gfortran buildPackages.stdenv.cc - ] ++ optionals stdenv.isDarwin [ - coreutils ]; makeFlags = mapAttrsToList (var: val: "${var}=${toString val}") (config // { FC = "${stdenv.cc.targetPrefix}gfortran"; - CC = "${stdenv.cc.targetPrefix}cc"; + CC = "${stdenv.cc.targetPrefix}${if stdenv.cc.isClang then "clang" else "cc"}"; PREFIX = placeholder "out"; NUM_THREADS = 64; INTERFACE64 = blas64; NO_STATIC = true; CROSS = stdenv.hostPlatform != stdenv.buildPlatform; - HOSTCC = "${buildPackages.stdenv.cc.targetPrefix}cc"; + HOSTCC = "cc"; NO_BINARY_MODE = stdenv.hostPlatform != stdenv.buildPlatform; }); diff --git a/pkgs/development/libraries/webkitgtk/default.nix b/pkgs/development/libraries/webkitgtk/default.nix index 8baa6b0fc836..aa05161d19c0 100644 --- a/pkgs/development/libraries/webkitgtk/default.nix +++ b/pkgs/development/libraries/webkitgtk/default.nix @@ -15,7 +15,7 @@ assert stdenv.isDarwin -> !enableGtk2Plugins; with stdenv.lib; stdenv.mkDerivation rec { name = "webkitgtk-${version}"; - version = "2.22.5"; + version = "2.22.6"; meta = { description = "Web content rendering engine, GTK+ port"; @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://webkitgtk.org/releases/${name}.tar.xz"; - sha256 = "04ybyvaz5xhfkd2k65pc0sqizngjvd82j1p56wz3lz4a84zqdlwr"; + sha256 = "0ny8azipr2dmdk79qrf4hvb2p4k5b3af38szjhmhg8mh1nfdp46z"; }; patches = optionals stdenv.isDarwin [ diff --git a/pkgs/development/libraries/wxSVG/default.nix b/pkgs/development/libraries/wxSVG/default.nix index 27b95208432e..442e3fca77c3 100644 --- a/pkgs/development/libraries/wxSVG/default.nix +++ b/pkgs/development/libraries/wxSVG/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { name = "wxSVG-${version}"; srcName = "wxsvg-${version}"; - version = "1.5.15"; + version = "1.5.16"; src = fetchurl { url = "mirror://sourceforge/project/wxsvg/wxsvg/${version}/${srcName}.tar.bz2"; - sha256 = "1f6fhkdmcfs8w7x08vhiqygss4qzcsimhd91h0j58zw25ky6rzqn"; + sha256 = "1gnajsk73vkj7ii43ynr20ln9qck3f0lshf5gdbxsam3qgmx7gd4"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/lua-modules/generated-packages.nix b/pkgs/development/lua-modules/generated-packages.nix index dc15a7a9ad67..b7224aa334db 100644 --- a/pkgs/development/lua-modules/generated-packages.nix +++ b/pkgs/development/lua-modules/generated-packages.nix @@ -50,6 +50,46 @@ argparse = buildLuarocksPackage { }; }; }; +basexx = buildLuarocksPackage { + pname = "basexx"; + version = "0.4.0-1"; + + src = fetchurl { + url = https://luarocks.org/basexx-0.4.0-1.src.rock; + sha256 = "1px8yrxg1qkk3kzdqj3siry742jdv4ysp2dmicxi15mkynqpjlzz"; + }; + disabled = ( luaOlder "5.1"); + propagatedBuildInputs = [lua ]; + buildType="builtin"; + + meta = { + homepage = "https://github.com/aiq/basexx"; + description="A base2, base16, base32, base64 and base85 library for Lua"; + license = { + fullName = "MIT"; + }; + }; +}; +cqueues = buildLuarocksPackage { + pname = "cqueues"; + version = "20171014.52-0"; + + src = fetchurl { + url = https://luarocks.org/cqueues-20171014.52-0.src.rock; + sha256 = "0q3iy1ja20nq2sn2n6badzhjq5kni86pfc09n5g2c46q9ja3vfzx"; + }; + disabled = ( lua.luaversion != "5.2"); + propagatedBuildInputs = [lua ]; + buildType="make"; + + meta = { + homepage = "http://25thandclement.com/~william/projects/cqueues.html"; + description="Continuation Queues: Embeddable asynchronous networking, threading, and notification framework for Lua on Unix."; + license = { + fullName = "MIT/X11"; + }; + }; +}; dkjson = buildLuarocksPackage { pname = "dkjson"; version = "2.5-2"; @@ -70,6 +110,26 @@ dkjson = buildLuarocksPackage { }; }; }; +fifo = buildLuarocksPackage { + pname = "fifo"; + version = "0.2-0"; + + src = fetchurl { + url = https://luarocks.org/fifo-0.2-0.src.rock; + sha256 = "082c5g1m8brnsqj5gnjs65bm7z50l6b05cfwah14lqaqsr5a5pjk"; + }; + + propagatedBuildInputs = [lua ]; + buildType="builtin"; + + meta = { + homepage = "https://github.com/daurnimator/fifo.lua"; + description="A lua library/'class' that implements a FIFO"; + license = { + fullName = "MIT/X11"; + }; + }; +}; inspect = buildLuarocksPackage { pname = "inspect"; version = "3.1.1-0"; @@ -90,6 +150,46 @@ inspect = buildLuarocksPackage { }; }; }; +lgi = buildLuarocksPackage { + pname = "lgi"; + version = "0.9.2-1"; + + src = fetchurl { + url = https://luarocks.org/lgi-0.9.2-1.src.rock; + sha256 = "07ajc5pdavp785mdyy82n0w6d592n96g95cvq025d6i0bcm2cypa"; + }; + disabled = ( luaOlder "5.1"); + propagatedBuildInputs = [lua ]; + buildType="make"; + + meta = { + homepage = "http://github.com/pavouk/lgi"; + description="Lua bindings to GObject libraries"; + license = { + fullName = "MIT/X11"; + }; + }; +}; +lpeg_patterns = buildLuarocksPackage { + pname = "lpeg_patterns"; + version = "0.5-0"; + + src = fetchurl { + url = https://luarocks.org/lpeg_patterns-0.5-0.src.rock; + sha256 = "0mlw4nayrsdxrh98i26avz5i4170a9brciybw88kks496ra36v8f"; + }; + + propagatedBuildInputs = [lua lpeg ]; + buildType="builtin"; + + meta = { + homepage = "https://github.com/daurnimator/lpeg_patterns/archive/v0.5.zip"; + description="a collection of LPEG patterns"; + license = { + fullName = "MIT"; + }; + }; +}; lrexlib-gnu = buildLuarocksPackage { pname = "lrexlib-gnu"; version = "2.9.0-1"; @@ -167,7 +267,7 @@ lua-cmsgpack = buildLuarocksPackage { "fetchSubmodules": true } '') ["date"]) ; - + disabled = ( luaOlder "5.1"); propagatedBuildInputs = [lua ]; buildType="builtin"; @@ -213,9 +313,9 @@ lua-term = buildLuarocksPackage { url = https://github.com/hoelzro/lua-term/archive/0.07.tar.gz; sha256 = "0c3zc0cl3a5pbdn056vnlan16g0wimv0p9bq52h7w507f72x18f1"; }; - - - + + + buildType="builtin"; meta = { @@ -279,8 +379,8 @@ penlight = buildLuarocksPackage { url = http://stevedonovan.github.io/files/penlight-1.5.4.zip; sha256 = "138f921p6kdqkmf4pz115phhj0jsqf28g33avws80d2vq2ixqm8q"; }; - - + + propagatedBuildInputs = [luafilesystem ]; buildType="builtin"; @@ -305,7 +405,7 @@ say = buildLuarocksPackage { url = https://github.com/Olivine-Labs/say/archive/v1.3-1.tar.gz; sha256 = "1jh76mxq9dcmv7kps2spwcc6895jmj2sf04i4y9idaxlicvwvs13"; }; - + disabled = ( luaOlder "5.1"); propagatedBuildInputs = [lua ]; buildType="builtin"; @@ -331,7 +431,7 @@ luv = buildLuarocksPackage { url = https://github.com/luvit/luv/releases/download/1.22.0-1/luv-1.22.0-1.tar.gz; sha256 = "1xvz4a0r6kd1xqxwm55g9n6imprxb79600x7dhyillrz7p5nm217"; }; - + disabled = ( luaOlder "5.1"); propagatedBuildInputs = [lua ]; buildType="cmake"; @@ -392,8 +492,8 @@ mpack = buildLuarocksPackage { url = http://luarocks.org/manifests/teto/mpack-1.0.7-0.src.rock; sha256 = "0nq4ixaminkc7fwfpivysyv0al3j5dffsvgdrnwnqdg3w7jgfbw7"; }; - - + + buildType="builtin"; meta = { @@ -437,7 +537,7 @@ busted = buildLuarocksPackage { url = https://github.com/Olivine-Labs/busted/archive/v2.0.rc13-0.tar.gz; sha256 = "0m72bldn1r6j94ahcfmpaq1mmysrshf9qi9fjas7hpal0jp8ivvl"; }; - + disabled = ( luaOlder "5.1"); propagatedBuildInputs = [lua lua_cliargs luafilesystem luasystem dkjson say luassert lua-term penlight mediator_lua ]; buildType="builtin"; @@ -463,7 +563,7 @@ luassert = buildLuarocksPackage { url = https://github.com/Olivine-Labs/luassert/archive/v1.7.11.tar.gz; sha256 = "1vwq3wqj9cjyz9lnf1n38yhpcglr2h40v3n9096i8vcpmyvdb3ka"; }; - + disabled = ( luaOlder "5.1"); propagatedBuildInputs = [lua say ]; buildType="builtin"; @@ -484,8 +584,8 @@ coxpcall = buildLuarocksPackage { url = https://luarocks.org/manifests/hisham/coxpcall-1.17.0-1.src.rock; sha256 = "0n1jmda4g7x06458596bamhzhcsly6x0p31yp6q3jz4j11zv1zhi"; }; - - + + buildType="builtin"; meta = { diff --git a/pkgs/development/lua-modules/overrides.nix b/pkgs/development/lua-modules/overrides.nix index 20a24681b6ae..1fcc49bf5468 100644 --- a/pkgs/development/lua-modules/overrides.nix +++ b/pkgs/development/lua-modules/overrides.nix @@ -5,6 +5,30 @@ with super; ##########################################3 #### manual fixes for generated packages ##########################################3 + cqueues = super.cqueues.override({ + nativeBuildInputs = [ pkgs.gnum4 ]; + buildInputs = [ pkgs.openssl ]; + extraConfig = with pkgs; '' + variables={ + CRYPTO_INCDIR="${openssl.dev}/include"; + CRYPTO_LIBDIR="${openssl.out}/lib"; + OPENSSL_INCDIR="${openssl.dev}/include"; + OPENSSL_LIBDIR="${openssl.out}/lib"; + } + ''; + }); + + lgi = super.lgi.overrideAttrs(oa: { + nativeBuildInputs = [ pkgs.pkgconfig ]; + buildInputs = with pkgs; oa.buildInputs ++ [ glib gobjectIntrospection]; + patches = [ + (pkgs.fetchpatch { + name = "lgi-find-cairo-through-typelib.patch"; + url = "https://github.com/psychon/lgi/commit/46a163d9925e7877faf8a4f73996a20d7cf9202a.patch"; + sha256 = "0gfvvbri9kyzhvq3bvdbj2l6mwvlz040dk4mrd5m9gz79f7w109c"; + }) + ]; + }); ltermbox = super.ltermbox.override( { disabled = !isLua51 || isLuaJIT; diff --git a/pkgs/development/ocaml-modules/topkg/default.nix b/pkgs/development/ocaml-modules/topkg/default.nix index 3e6b78a71719..e28a86907bb4 100644 --- a/pkgs/development/ocaml-modules/topkg/default.nix +++ b/pkgs/development/ocaml-modules/topkg/default.nix @@ -22,11 +22,11 @@ in stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-topkg-${version}"; - version = "0.9.1"; + version = "1.0.0"; src = fetchurl { url = "http://erratique.ch/software/topkg/releases/topkg-${version}.tbz"; - sha256 = "1slrzbmyp81xhgsfwwqs2d6gxzvqx0gcp34rq00h5iblhcq7myx6"; + sha256 = "1df61vw6v5bg2mys045682ggv058yqkqb67w7r2gz85crs04d5fw"; }; buildInputs = [ ocaml findlib ocamlbuild ]; diff --git a/pkgs/development/python-modules/acme/default.nix b/pkgs/development/python-modules/acme/default.nix index 503c6f796591..e9156b5c6af1 100644 --- a/pkgs/development/python-modules/acme/default.nix +++ b/pkgs/development/python-modules/acme/default.nix @@ -1,6 +1,6 @@ { buildPythonPackage , certbot -, nose +, pytest , cryptography , pyasn1 , pyopenssl @@ -8,6 +8,7 @@ , josepy , pytz , requests +, requests-toolbelt , six , werkzeug , mock @@ -20,13 +21,13 @@ buildPythonPackage rec { pname = "acme"; propagatedBuildInputs = [ - cryptography pyasn1 pyopenssl pyRFC3339 pytz requests six werkzeug mock - ndg-httpsclient josepy + cryptography pyasn1 pyopenssl pyRFC3339 pytz requests requests-toolbelt six + werkzeug mock ndg-httpsclient josepy ]; - checkInputs = [ nose ]; + checkInputs = [ pytest ]; - postUnpack = "sourceRoot=\${sourceRoot}/acme"; + sourceRoot = "source/${pname}"; meta = certbot.meta // { description = "ACME protocol implementation in Python"; diff --git a/pkgs/development/python-modules/dateparser/default.nix b/pkgs/development/python-modules/dateparser/default.nix index f6af0855b9f5..22787df8bb64 100644 --- a/pkgs/development/python-modules/dateparser/default.nix +++ b/pkgs/development/python-modules/dateparser/default.nix @@ -14,11 +14,11 @@ buildPythonPackage rec { pname = "dateparser"; - version = "0.7.0"; + version = "0.7.1"; src = fetchPypi { inherit pname version; - sha256 = "940828183c937bcec530753211b70f673c0a9aab831e43273489b310538dff86"; + sha256 = "42d51be54e74a8e80a4d76d1fa6e4edd997098fce24ad2d94a2eab5ef247193e"; }; checkInputs = [ nose mock parameterized six glibcLocales ]; diff --git a/pkgs/development/python-modules/django/2_0.nix b/pkgs/development/python-modules/django/2_0.nix deleted file mode 100644 index daabcefb6e92..000000000000 --- a/pkgs/development/python-modules/django/2_0.nix +++ /dev/null @@ -1,43 +0,0 @@ -{ stdenv, buildPythonPackage, fetchPypi, substituteAll, - isPy3k, - geos, gdal, pytz, - withGdal ? false -}: - -buildPythonPackage rec { - pname = "Django"; - version = "2.0.10"; - - disabled = !isPy3k; - - src = fetchPypi { - inherit pname version; - sha256 = "0292a7ad7d8ffc9cfc6a77f043d2e81f5bbc360c0c4a1686e130ef3432437d23"; - }; - - patches = stdenv.lib.optionals withGdal [ - (substituteAll { - src = ./1.10-gis-libs.template.patch; - geos = geos; - gdal = gdal; - extension = stdenv.hostPlatform.extensions.sharedLibrary; - }) - ]; - - # patch only $out/bin to avoid problems with starter templates (see #3134) - postFixup = '' - wrapPythonProgramsIn $out/bin "$out $pythonPath" - ''; - - propagatedBuildInputs = [ pytz ]; - - # too complicated to setup - doCheck = false; - - meta = with stdenv.lib; { - description = "A high-level Python Web framework"; - homepage = https://www.djangoproject.com/; - license = licenses.bsd3; - maintainers = with maintainers; [ georgewhewell ]; - }; -} diff --git a/pkgs/development/python-modules/filetype/default.nix b/pkgs/development/python-modules/filetype/default.nix index 1cf8c6f9de0d..c83593227524 100644 --- a/pkgs/development/python-modules/filetype/default.nix +++ b/pkgs/development/python-modules/filetype/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "filetype"; - version = "1.0.3"; + version = "1.0.4"; src = fetchPypi { inherit pname version; - sha256 = "74ccbd9ca5c95aad5665eee2f173fb1930226a12f05b0bc7380b1d456a86fcdf"; + sha256 = "366c50d0211798e696626f125134163ac2fff25a70131eec80a1d1a6196c1027"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/isbnlib/default.nix b/pkgs/development/python-modules/isbnlib/default.nix index 1d16265242a9..012bab56ab6e 100644 --- a/pkgs/development/python-modules/isbnlib/default.nix +++ b/pkgs/development/python-modules/isbnlib/default.nix @@ -1,21 +1,17 @@ { lib , buildPythonPackage -, fetchFromGitHub +, fetchPypi , nose , coverage }: buildPythonPackage rec { pname = "isbnlib"; - version = "3.9.4"; + version = "3.9.5"; - # PyPI tarball is missing LICENSE file - # See https://github.com/xlcnd/isbnlib/pull/53 - src = fetchFromGitHub { - owner = "xlcnd"; - repo = "isbnlib"; - rev = "v${version}"; - sha256 = "0gc0k5khf34b4zz56a9zc3rscdhj3bx849lbzgmzpji30sbyy1fh"; + src = fetchPypi { + inherit pname version; + sha256 = "f500a0561b83a2982d3424d640243d05bda9716f4fe9a655e331f3a07ca02710"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/mailman-rss/default.nix b/pkgs/development/python-modules/mailman-rss/default.nix new file mode 100644 index 000000000000..afce4521d5b4 --- /dev/null +++ b/pkgs/development/python-modules/mailman-rss/default.nix @@ -0,0 +1,25 @@ +{ stdenv, python3Packages, withTwitter ? false}: + +python3Packages.buildPythonApplication rec { + pname = "mailman-rss"; + version = "0.2.4"; + + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "1brrik70jyagxa9l0cfmlxvqpilwj1q655bphxnvjxyganxf4c00"; + }; + + propagatedBuildInputs = with python3Packages; [ dateutil future requests beautifulsoup4 ] + ++ stdenv.lib.optional withTwitter python3Packages.twitter + ; + + # No tests in Pypi Tarball + doCheck = false; + + meta = with stdenv.lib; { + description = "Mailman archive -> rss converter"; + homepage = https://github.com/kyamagu/mailman-rss; + license = licenses.mit; + maintainers = with maintainers; [ samueldr ]; + }; +} diff --git a/pkgs/development/python-modules/matplotlib/2.nix b/pkgs/development/python-modules/matplotlib/2.nix index 129b864a241d..6334d2e4f793 100644 --- a/pkgs/development/python-modules/matplotlib/2.nix +++ b/pkgs/development/python-modules/matplotlib/2.nix @@ -1,6 +1,7 @@ { stdenv, fetchPypi, python, buildPythonPackage, pycairo, backports_functools_lru_cache , which, cycler, dateutil, nose, numpy, pyparsing, sphinx, tornado, kiwisolver , freetype, libpng, pkgconfig, mock, pytz, pygobject3, functools32, subprocess32 +, fetchpatch , enableGhostscript ? false, ghostscript ? null, gtk3 , enableGtk2 ? false, pygtk ? null, gobject-introspection , enableGtk3 ? false, cairo @@ -47,9 +48,16 @@ buildPythonPackage rec { ++ stdenv.lib.optionals enableQt [ pyqt4 ] ++ stdenv.lib.optionals python.isPy2 [ functools32 subprocess32 ]; - patches = - [ ./basedirlist.patch ] ++ - stdenv.lib.optionals stdenv.isDarwin [ ./darwin-stdenv-2.2.3.patch ]; + patches = [ + ./basedirlist.patch + + # https://github.com/matplotlib/matplotlib/pull/12478 + (fetchpatch { + name = "numpy-1.16-compat.patch"; + url = "https://github.com/matplotlib/matplotlib/commit/2980184d092382a40ab21f95b79582ffae6e19d6.patch"; + sha256 = "1c0wj28zy8s5h6qiavx9zzbhlmhjwpzbc3fyyw9039mbnqk0spg2"; + }) + ] ++ stdenv.lib.optionals stdenv.isDarwin [ ./darwin-stdenv-2.2.3.patch ]; # Matplotlib tries to find Tcl/Tk by opening a Tk window and asking the # corresponding interpreter object for its library paths. This fails if diff --git a/pkgs/development/python-modules/moderngl/default.nix b/pkgs/development/python-modules/moderngl/default.nix new file mode 100644 index 000000000000..8040b80f88b8 --- /dev/null +++ b/pkgs/development/python-modules/moderngl/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, isPy3k +, libGL +, libX11 +}: + +buildPythonPackage rec { + pname = "moderngl"; + version = "5.5.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "0x8xblc3zybp7jw9cscpm4r5pmmilj9l4yi1rkxyf0y80kchlxq4"; + }; + + disabled = !isPy3k; + + buildInputs = [ libGL libX11 ]; + + # Tests need a display to run. + doCheck = false; + + meta = with lib; { + homepage = https://github.com/cprogrammer1994/ModernGL; + description = "High performance rendering for Python 3"; + license = licenses.mit; + platforms = platforms.linux; # should be mesaPlatforms, darwin build breaks. + maintainers = with maintainers; [ c0deaddict ]; + }; +} diff --git a/pkgs/development/python-modules/pybind11/default.nix b/pkgs/development/python-modules/pybind11/default.nix new file mode 100644 index 000000000000..0bdac6594062 --- /dev/null +++ b/pkgs/development/python-modules/pybind11/default.nix @@ -0,0 +1,26 @@ +{ lib, buildPythonPackage, fetchPypi }: + +buildPythonPackage rec { + pname = "pybind11"; + version = "2.2.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "1kz1z2cg3q901q9spkdhksmcfiskaghzmbb9ivr5mva856yvnak4"; + }; + + # Current PyPi version does not include test suite + doCheck = false; + + meta = { + homepage = https://github.com/pybind/pybind11; + description = "Seamless operability between C++11 and Python"; + longDescription = '' + Pybind11 is a lightweight header-only library that exposes + C++ types in Python and vice versa, mainly to create Python + bindings of existing C++ code. + ''; + license = lib.licenses.bsd3; + maintainers = [ lib.maintainers.yuriaisaka ]; + }; +} diff --git a/pkgs/development/python-modules/pyslurm/default.nix b/pkgs/development/python-modules/pyslurm/default.nix index 7d592c7b450b..d8609ca07766 100644 --- a/pkgs/development/python-modules/pyslurm/default.nix +++ b/pkgs/development/python-modules/pyslurm/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitHub, buildPythonPackage, cython, slurm }: +{ lib, fetchFromGitHub, fetchpatch, buildPythonPackage, cython, slurm }: buildPythonPackage rec { pname = "pyslurm"; @@ -11,6 +11,19 @@ buildPythonPackage rec { sha256 = "1rymx106xa99wd4n44s7jw0w41spg39y1ji4fgn01yk7wjfrdrwg"; }; + # Needed for patch below to apply + prePatch = '' + sed -i -e '/__max_slurm_hex_version__ = "0x1208/c__max_slurm_hex_version__ = "0x120804"' setup.py + ''; + + patches = [ + # Implements a less strict slurm version check + (fetchpatch { + url = "https://github.com/PySlurm/pyslurm/commit/d3703f2d58b5177d29092fe1aae1f7a96da61765.diff"; + sha256 = "1s41z9bhzhplgg08p1llc3i8zw20r1479s04y0l1vx0ak51b6w0k"; + }) + ]; + buildInputs = [ cython slurm ]; setupPyBuildFlags = [ "--slurm-lib=${slurm}/lib" "--slurm-inc=${slurm.dev}/include" ]; diff --git a/pkgs/development/python-modules/pysnmp/default.nix b/pkgs/development/python-modules/pysnmp/default.nix index 38ea31a19d47..f4d6ceea8dd0 100644 --- a/pkgs/development/python-modules/pysnmp/default.nix +++ b/pkgs/development/python-modules/pysnmp/default.nix @@ -7,12 +7,12 @@ }: buildPythonPackage rec { - version = "4.4.8"; + version = "4.4.9"; pname = "pysnmp"; src = fetchPypi { inherit pname version; - sha256 = "1c42qicrh56m49374kxna2s2nmdwna3yqgnz16frzj0dw7vxrrhk"; + sha256 = "0h844s9p67z50bv83wdyf577759jg0xrj99fv4yrcvhjh2byblfm"; }; # NameError: name 'mibBuilder' is not defined @@ -21,9 +21,9 @@ buildPythonPackage rec { propagatedBuildInputs = [ pyasn1 pycryptodomex pysmi ]; meta = with stdenv.lib; { - homepage = http://pysnmp.sf.net; + homepage = http://snmplabs.com/pysnmp/index.html; description = "A pure-Python SNMPv1/v2c/v3 library"; license = licenses.bsd2; - maintainers = with maintainers; [ koral ]; + maintainers = with maintainers; [ primeos koral ]; }; } diff --git a/pkgs/development/python-modules/scrapy/default.nix b/pkgs/development/python-modules/scrapy/default.nix index 8bb332fa9da5..ecfbc98530ed 100644 --- a/pkgs/development/python-modules/scrapy/default.nix +++ b/pkgs/development/python-modules/scrapy/default.nix @@ -1,8 +1,8 @@ { stdenv, buildPythonPackage, fetchPypi, glibcLocales, mock, pytest, botocore, testfixtures, pillow, six, twisted, w3lib, lxml, queuelib, pyopenssl, - service-identity, parsel, pydispatcher, cssselect, lib, fetchpatch }: + service-identity, parsel, pydispatcher, cssselect, lib }: buildPythonPackage rec { - version = "1.5.1"; + version = "1.6.0"; pname = "Scrapy"; checkInputs = [ glibcLocales mock pytest botocore testfixtures pillow ]; @@ -16,25 +16,21 @@ buildPythonPackage rec { # root and readonly. As a consequence scrapy can't edit the # project templates. ./permissions-fix.patch - # fix python37 issues. Remove with the next release - (fetchpatch { - url = https://github.com/scrapy/scrapy/commit/f4f39057cbbfa4daf66f82061e57101b88d88d05.patch; - sha256 = "1f761qkji362i20i5bzcxz44sihvl29prm02i5l2xyhgl1hp91hv"; - }) ]; LC_ALL="en_US.UTF-8"; + # Disable doctest plugin—enabled in the shipped pytest.ini—because it causes pytest to hang # Ignore proxy tests because requires mitmproxy # Ignore test_retry_dns_error because tries to resolve an invalid dns and weirdly fails with "Reactor was unclean" # Ignore xml encoding test on darwin because lxml can't find encodings https://bugs.launchpad.net/lxml/+bug/707396 checkPhase = '' - pytest --ignore=tests/test_linkextractors_deprecated.py --ignore=tests/test_proxy_connect.py --deselect tests/test_crawl.py::CrawlTestCase::test_retry_dns_error ${lib.optionalString stdenv.isDarwin "--deselect tests/test_utils_iterators.py::LxmlXmliterTestCase::test_xmliter_encoding"} + pytest -p no:doctest --ignore=tests/test_linkextractors_deprecated.py --ignore=tests/test_proxy_connect.py --deselect tests/test_crawl.py::CrawlTestCase::test_retry_dns_error ${lib.optionalString stdenv.isDarwin "--deselect tests/test_utils_iterators.py::LxmlXmliterTestCase::test_xmliter_encoding"} ''; src = fetchPypi { inherit pname version; - sha256 = "5a398bf6818f87dcc817c919408a195f19ba46414ae12f259119336cfa862bb6"; + sha256 = "558dfd10ac53cb324ecd7eefd3eac412161c7507c082b01b0bcd2c6e2e9f0766"; }; postInstall = '' diff --git a/pkgs/development/python-modules/tornado/default.nix b/pkgs/development/python-modules/tornado/default.nix index d446d377e66f..1d8a03578cda 100644 --- a/pkgs/development/python-modules/tornado/default.nix +++ b/pkgs/development/python-modules/tornado/default.nix @@ -42,6 +42,8 @@ buildPythonPackage rec { inherit pname sha256 version; }; + __darwinAllowLocalNetworking = true; + meta = { description = "A web framework and asynchronous networking library"; homepage = http://www.tornadoweb.org/; diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 360a0fc89d50..f023779b88d2 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -13,8 +13,8 @@ in with self; { ACME = derive2 { name="ACME"; version="2.38.0"; sha256="17vr6ifjnmpcclifnzpbz538bmvs4xfym6rq9ndkh9xbjfacfcdm"; depends=[Biobase BiocGenerics]; }; ADaCGH2 = derive2 { name="ADaCGH2"; version="2.22.0"; sha256="121vjv6xbinkkl6zq7gg3pgqwk1068rh2fpd16w5c7pcslkr7n1q"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; AGDEX = derive2 { name="AGDEX"; version="1.30.0"; sha256="0l16sfmm3j9lhyjbl0bcghhkmr77a2rrscfd3ry93z7q0gki0fw8"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.14.0"; sha256="0kvfdr9fk3lvbj2b46ydnhj64j4gqg8ihc1vrdzydxwc8nzmp60h"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.14.0"; sha256="0zgmybmmj7an8cv8396n6q6jc27p4nrac95d61kfqgxm5xqyfd10"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; }; + AIMS = derive2 { name="AIMS"; version="1.14.1"; sha256="1np7r3982i3l5pwakmjmg7c326f47bsr9sbp5c5b6mhz500s5mrb"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.14.1"; sha256="190kcvfqhh1rg67kggdvp4pd6i3dicnqclrri0y06zrnl1c8cnlw"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; }; AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.8.0"; sha256="0w8h7a8skvwd8ass98y8sx733hz23kczpxsbwi7cdmpx8b0wxqaq"; depends=[]; }; ANF = derive2 { name="ANF"; version="1.4.0"; sha256="08kd394kz7x0hjb8js9xpz8f1b7rg4yzghgys0il0w1z335ivb8c"; depends=[Biobase igraph MASS RColorBrewer survival]; }; ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.22.0"; sha256="09wfd4vqfvmkpqn9dwqly1dz4h1ckh621jbwj1dab6q4z0dfmzmd"; depends=[ARRmData]; }; @@ -24,9 +24,9 @@ in with self; { ASICS = derive2 { name="ASICS"; version="1.2.0"; sha256="12dq0ydn35zyjfspaxpn6k8wk8443a666v5ql4d4x5nf5vy39sk7"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; }; ASSET = derive2 { name="ASSET"; version="2.0.0"; sha256="05d788w7l6sd63xzay8yv0zxjbibm6dfm9rm8shihzn74c9wk7i9"; depends=[MASS msm rmeta]; }; ASSIGN = derive2 { name="ASSIGN"; version="1.18.0"; sha256="1mcjz9nksk0a5jgd4wyjpf7af6c883idllkx4z14w651840sd6lr"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASpli = derive2 { name="ASpli"; version="1.8.0"; sha256="0x51ksxm54bfd4kyrws58wi1r5r4ak16fsx9dazx1a04ibz2sjfc"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; + ASpli = derive2 { name="ASpli"; version="1.8.1"; sha256="1lzfmnhpy94q9rj4qsgd7hy031y62jgfs4650ijs3agzb674z1ji"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; ATACseqQC = derive2 { name="ATACseqQC"; version="1.6.4"; sha256="1rblvqar11fib6ip2hq0756vqi6qmncf90jw6i5p5lrgzmaxy8hn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.4.0"; sha256="0c784r5bm3pi0s5cismsj9p3c27zj8171bgcl2pg9gcllzm15mp7"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; }; + AUCell = derive2 { name="AUCell"; version="1.4.1"; sha256="1kdrs0521cyb8wlc4i3idfprrcy2f9w6kl56hfa94n0brmx62ya9"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; }; AffiXcan = derive2 { name="AffiXcan"; version="1.0.0"; sha256="1y07gf8f94s2i080a3bh0gam2fx2n4hmbznddkcxv7rkqgcq0adx"; depends=[BiocParallel MultiAssayExperiment SummarizedExperiment]; }; AffyCompatible = derive2 { name="AffyCompatible"; version="1.42.0"; sha256="1vkjlpxpckmpgpf2svz866sa2pjpkhp4nc06vzpjfa8sqj5dl6n4"; depends=[Biostrings RCurl XML]; }; AffyExpress = derive2 { name="AffyExpress"; version="1.48.0"; sha256="0zkk74dnbihc3xna4hlypyyqg3arhdsjqbc7q3dji8j9kz76kmcw"; depends=[affy limma]; }; @@ -34,54 +34,54 @@ in with self; { AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.32.0"; sha256="0iqns14hihxr2rf4g3x47k9sniy6qsfmqq1r4jd8alcis22pl4gx"; depends=[affy affycoretools Biobase limma preprocessCore]; }; AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.20.0"; sha256="03524lj6aw9cskbpxzjmi9g708x6p94mf26yz4j941g1d0mc3z91"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.16.0"; sha256="088f4h87bvlckf4s4q8iy9n9d9hw9njj6y4wwr3f62xax264glj0"; depends=[Biobase graph log4r rjson]; }; - Anaquin = derive2 { name="Anaquin"; version="2.6.0"; sha256="0d3jnxc5dxj0dk5h9m9b5fyi2jd00i7jvdgsn5q1zhrqnddiwhym"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.10.1"; sha256="1409vacjj27gm7ck5b888rys2gjnqb46z96ibgam6z2gglhf38mk"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + Anaquin = derive2 { name="Anaquin"; version="2.6.1"; sha256="1p01bgfx5i82x6541q3479fgwln5ri8pyqrm2hbg0hlgl25w3v4d"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.10.2"; sha256="0j25syzlnyq8c8pxc5yfm6k4dzvprpna08gg6117v4k3sdmgcz4p"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.44.0"; sha256="1954vimkx5yb9irppq8vssq0f3yjkg36w38b9r0rqmijx1ps7x5d"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.6.0"; sha256="0wrr10cxjzmxx46vjzq2nsf6xlqz1sqwx4xm0sk3d77ff8wmph4x"; depends=[GenomicRanges lazyeval]; }; AnnotationForge = derive2 { name="AnnotationForge"; version="1.24.0"; sha256="13yvhf3yskmvhs8szs6rkw93h81h5xqa3h19h91pp6nprhc8s3ll"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.32.0"; sha256="1x11mfabh7kbp39y5rkmrpjkaawx7ab5anfmciamrmrcw1kddbss"; depends=[AnnotationDbi DBI]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="2.14.2"; sha256="17fgrvcnbii9siv5rq5j09bxhqffx47f6jf10418qvr7hh61ic1g"; depends=[AnnotationDbi BiocGenerics BiocManager curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="2.14.3"; sha256="04qfr7jmmp8h2c9q62fk1izild9cs03kjilz4k4anvg56ddm5v77"; depends=[AnnotationDbi BiocGenerics BiocManager curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.12.0"; sha256="1xim76sxldx70h13fpkhz7fxr5rcq0gp7558w4v1iqjjzd4gp3mh"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; ArrayExpress = derive2 { name="ArrayExpress"; version="1.42.0"; sha256="1a61miwsyqghmqnfnfpd7b0p712mz9cpcrq00p9b7jr8j4jd5vla"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.32.0"; sha256="1k8qq2l1jvnm0kqmixk4pjw8k2cz9viyh14pkbn93sv8j0bvqn0n"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.32.1"; sha256="0gv3f1ynyl52ab7zvmfi9s34ns6nwqyayh5imv6b31l92rw5ifdm"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; ArrayTV = derive2 { name="ArrayTV"; version="1.20.0"; sha256="00azibnfaa7w9gzlx8l21l9xlkzagwb0zbd70f95wvbr5qiq9w93"; depends=[DNAcopy foreach IRanges oligoClasses S4Vectors]; }; ArrayTools = derive2 { name="ArrayTools"; version="1.42.0"; sha256="08wklnb3wi0yzxis5nic5g7w8shn9n3j6h7vbvxjv8n92bqmc0y1"; depends=[affy Biobase limma xtable]; }; AssessORF = derive2 { name="AssessORF"; version="1.0.2"; sha256="1kkdds8mmrnh72j267xhyfn40i5czdfwhy8zlxxlm376mxipxwgj"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; BAC = derive2 { name="BAC"; version="1.42.0"; sha256="02r74rwsn59b1f9l3n51xh6jj5bwjcg9qp63i1jczfnglwga01av"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.20.0"; sha256="1aizqvi86wkn7d98sh55c24zx9zh55n4w5xfya50h9yg70rl4wgg"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.20.1"; sha256="114xy8yynfncnrlsi1v44gsiq2a8jyh9q7ssb3f3rhb7rw8v0k4l"; depends=[]; }; BAGS = derive2 { name="BAGS"; version="2.22.0"; sha256="13zlmffg8y1vrkpj62wawfzx9h68q1p42bizrwzq0cdh6jyafp3z"; depends=[Biobase breastCancerVDX]; }; - BASiCS = derive2 { name="BASiCS"; version="1.4.0"; sha256="0b8qjd9pyva8hjc5083dwrfij9j3khin01n1wyc2qs0df0785xjf"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; + BASiCS = derive2 { name="BASiCS"; version="1.4.1"; sha256="1ngkc3jjpma3k7xsn4a93bv4zzbxm0v38gy8hkzn29s3yfvyfmb3"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.12.0"; sha256="0k49ad1k3szjawsn7s97k7y2j7c03cqjcg8kmx8wmypjivjv1nv0"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; BCRANK = derive2 { name="BCRANK"; version="1.44.0"; sha256="0zrmrc4dsz9jl0n7a0fsnmfws54hpda21sxpdqdq86qhj4ljz2nd"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.0.0"; sha256="0l6p0nbzik4vcdw1wkvp2xnvz7y66mim3p4mkyf5s1pwblfzg456"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.2.0"; sha256="0i8qvj3j3cj6pvmckwqfc97gfyrmv40a2fscc71ihnp0xjbagm5m"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.20.0"; sha256="1m9mi0wgzz8v1f85j168d1hs3ksvz3qgj21hkq95swi45x3bmqs2"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.0.1"; sha256="1i4d9qk4iw8m1p590fg85qg6w55982mn41zp8bqinygx5vzvq8i2"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.2.1"; sha256="0zhf8l789yhp4fx75s3955r0m809r9lilrd57y5qkcpya9vq8fxb"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.20.1"; sha256="1xrfgfw91fdyx2dpkbc6xvwg266ym623mbmqzlg879lh0pny0400"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; BEclear = derive2 { name="BEclear"; version="1.14.0"; sha256="0xwmq59hbkxki573brhp2rvmn06dyysk64n4fs0vna0h729d8lhj"; depends=[BiocParallel data_table futile_logger Matrix Rdpack]; }; BGmix = derive2 { name="BGmix"; version="1.42.0"; sha256="19n8cqdfrp8br20g7gw787w2sa3sgs41vfnic6l9gdbqphb702d1"; depends=[KernSmooth]; }; BHC = derive2 { name="BHC"; version="1.34.0"; sha256="0wsz5ak60fd69mds7f3siv4g3hygbzwdapm6jkldnph2x3sv0f2w"; depends=[]; }; BLMA = derive2 { name="BLMA"; version="1.6.0"; sha256="12fxafyyffgmbnqqpq15wfawa5s1lmygkjxbh08sl34a9d5g2apf"; depends=[Biobase graph GSA limma PADOG ROntoTools]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.8.0"; sha256="1pnmpwmd30c0c2pm59wkqr95p4a8fm93fdkrk6r239z7z810svyh"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.28.0"; sha256="13sqj6mxx1wyv0ii2lag4qcd95ly9c2r4bh0ds8f40gfz2dx1z62"; depends=[Biostrings lattice PolynomF]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.8.1"; sha256="10dsww7bhad59i3667iy2kq40bxd34ikbl8bhbczgwm2pfp0pq9f"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.28.1"; sha256="0nz3ci9jyckbwpvarjmc5k19qspv5xpkks83ys3zz24j1v828z2d"; depends=[Biostrings lattice PolynomF]; }; BSgenome = derive2 { name="BSgenome"; version="1.50.0"; sha256="07z4zxx0khrc86qqvc7vxww8df9fh6pyks9ajxkc9gdqr5nn79j7"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.6.0"; sha256="1bbqx3ywh7yr49az3xyhgpyjbiqmkpv2p63s3mnywwxbccn0fxh3"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.6.1"; sha256="1j15r2f772ybvfdgdrhimypdrxq30wbxm5idyf4vgwvsgwmy4vbq"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; BUS = derive2 { name="BUS"; version="1.38.0"; sha256="04lk2rq8cv6hw64ssl1v64gqg7fz2jm7hd4hwkf6q6nhivr7skpi"; depends=[infotheo minet]; }; BUScorrect = derive2 { name="BUScorrect"; version="1.0.0"; sha256="1z841bjyyqah232dhdpm7j77irjim09h3lpy2659n5llgzr7cdi2"; depends=[gplots SummarizedExperiment]; }; BaalChIP = derive2 { name="BaalChIP"; version="1.8.0"; sha256="0xscwx5afwcyrg8pcq3fd80m9h8mqiswyvnk3x13r020r1jgxr9l"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.10.0"; sha256="1d29hnaxyvlpdbzadnjp3x1jba1d4vis797iak81b217wrq34g1z"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.26.0"; sha256="1w7iz4nhgpx25004s9bd6mw9pm1z8dr8p7nxr6ck8wbdv19j1srp"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.18.0"; sha256="0g0nzmh073f8pvrmf9cb4sjv61cn227s84ysb4arb852xap4369l"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.18.1"; sha256="1vn9lwyjmhs09cpagiycvcyync54xfyv7id8y597p4i8p2nk6c26"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.10.0"; sha256="03micn3sy861i7218vcx7fpzflvlh5rsgx0gnc4irzvi1xh478j9"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; BatchQC = derive2 { name="BatchQC"; version="1.10.1"; sha256="1clsabpfnaiy0dlb0m88z72kmwslny9rinrgzcb9ljjma3yarx8q"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.8.0"; sha256="0ziaciznv926xq6xjj22afcwpvz6ha0g93fgyw0y6cr4kx8mlphd"; depends=[Biobase]; }; BayesPeak = derive2 { name="BayesPeak"; version="1.34.0"; sha256="0zj06b8r0hqjczhlryfy8z7jf799gglisv4cxszlzw4wj7byyi9x"; depends=[IRanges]; }; BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.34.0"; sha256="0scdvj7d6gh78h6l1iv6nrd100i0n51a5dki9nvb7sk76sw06zzk"; depends=[]; }; BgeeDB = derive2 { name="BgeeDB"; version="2.8.0"; sha256="1bhin7h1bd3wc74af1fms0ha3fy9drij26d1np27knpjs95wygiq"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.2.0"; sha256="0s4wrl9c5p7vn52y1kn4vxmpy2d2bppz8qqa00782fmy59b73mrf"; depends=[GenomicRanges poibin]; }; + BiFET = derive2 { name="BiFET"; version="1.2.1"; sha256="0wxyy5y1i06x6q6s89iq9mx7lz84pxx3s20za5r3gydrwphgkc9i"; depends=[GenomicRanges poibin]; }; BiGGR = derive2 { name="BiGGR"; version="1.18.0"; sha256="0p42i0j2sqz9kc79nh0wi7hb7r8y01cs5gczanza59q3amhjidqq"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; BiRewire = derive2 { name="BiRewire"; version="3.14.0"; sha256="0zawg7gjywf8bsxmr33dj4x0xxy06rxcmimdmwx6flx0igf8xrx0"; depends=[igraph Matrix slam tsne]; }; BiSeq = derive2 { name="BiSeq"; version="1.22.0"; sha256="0bvq2qn4pn632x8ppqx99ar44xh1nazn34f2jqzhg3m8mc7q5h7c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; BicARE = derive2 { name="BicARE"; version="1.40.0"; sha256="1dl1jv927l1ywsccmf662j3dl7m4pnkw8v1lpv47nq49pns0qqsw"; depends=[Biobase GSEABase multtest]; }; - BioCor = derive2 { name="BioCor"; version="1.6.0"; sha256="07xldgqdddx1ax1djp5hgp9xp0qmi4zxz938mkm8y1v6iqwjdcc6"; depends=[BiocParallel GSEABase Matrix]; }; + BioCor = derive2 { name="BioCor"; version="1.6.1"; sha256="1zli54qjdywwfjzjkwhldy5ma9k6q5fn52vzzfllhwwkxba6ggn7"; depends=[BiocParallel GSEABase Matrix]; }; BioMVCClass = derive2 { name="BioMVCClass"; version="1.50.0"; sha256="0kkjj1c0s443agk7kaa1dxda4d1bsmlkxmivz2gvf5bhnbaxjn13"; depends=[Biobase graph MVCClass Rgraphviz]; }; BioNet = derive2 { name="BioNet"; version="1.42.0"; sha256="1hxlwh3jwgnhs8ma0ky6nk9hm2yphd0g7a7ic32vibmw1xcs8znd"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; BioNetStat = derive2 { name="BioNetStat"; version="1.2.2"; sha256="0d2kh6bbvbxwd48c9wa6nbaj12mmgikknrsdm13r4va7218d24f5"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; }; @@ -94,15 +94,15 @@ in with self; { BiocGenerics = derive2 { name="BiocGenerics"; version="0.28.0"; sha256="0cvpsrhg7sn7lpqgxvqrsagv6j7xj5rafq5xdjfd8zc4gxrs5rb8"; depends=[]; }; BiocInstaller = derive2 { name="BiocInstaller"; version="1.32.1"; sha256="1s1f9qhyf3mc73ir25x2zlgi9hf45a37lg4z8fbva4i21hqisgsl"; depends=[]; }; BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.0.0"; sha256="1fsb96acidlxwf0h65xv7fnwdi58ckmq00gmwykrlawh88wgn1ll"; depends=[BiocParallel Rcpp RcppAnnoy S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.2.0"; sha256="0bipd4s5qpa4nkvl362dvv966zyib5r77jpwj5821dajghxhwz6p"; depends=[bigrquery ComplexHeatmap DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 httr IRanges magrittr rjson S4Vectors shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.16.4"; sha256="0wlj7pc53yv6287a294zvkrsq4n0066r6bj4q1vbcsmbkgp6s9yg"; depends=[BH futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.0.2"; sha256="0ypiagphwlj5jmxxwbdfrwnmm593rsizkchfdb0kkascdbqzqs55"; depends=[BiocManager dplyr DT htmltools htmlwidgets httr igraph jsonlite readr rex rvest stringr tibble tidyr xml2]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.2.1"; sha256="0w0hqdyv580j2lxp0ma74swi0cmzf6z6v5zqnhss8qawmm90cc9x"; depends=[bigrquery ComplexHeatmap DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 httr IRanges magrittr rjson S4Vectors shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.16.5"; sha256="1164dk0fajb2vrkfpcjs11055qf1cs4vvbnq0aqdaaf2p4lyx41l"; depends=[BH futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.0.3"; sha256="0mfxcabkdxsbkk1j3kncn5jhm08b0zi1jjsz7ajkhhw7c9w85gvm"; depends=[BiocManager dplyr DT gh htmltools htmlwidgets httr igraph jsonlite readr rex rvest stringr tibble tidyr xml2]; }; BiocSklearn = derive2 { name="BiocSklearn"; version="1.4.0"; sha256="08a1jaxhqaxqrhbgkm11isi3d83sbpfjh02nki7rbwffcjim3fy0"; depends=[BBmisc knitr reticulate SummarizedExperiment]; }; BiocStyle = derive2 { name="BiocStyle"; version="2.10.0"; sha256="01lm8xljilj666fcl3wnw82dxkcxnlr294lddr553rm8xr5nwg31"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; BiocVersion = derive2 { name="BiocVersion"; version="3.8.0"; sha256="1kyqzca8n7wggz6lfx7xj0i1h1s3rma15v11iycgkdka58443qqr"; depends=[]; }; BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.8.0"; sha256="1wpihkd5j3v2qls2n67dwydvxk2mjb6cx27if5vxh7v99x3vph04"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; }; - Biostrings = derive2 { name="Biostrings"; version="2.50.1"; sha256="1qyv1ps7vy6gy78pm2rcikg0bgf1mv7falahjp3pkwqq1272hrl8"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.26.0"; sha256="0z78cwsqx7r8rdy5laaamdbd6jl0w8i4rkpbv8z9z21j3namr9fn"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; + Biostrings = derive2 { name="Biostrings"; version="2.50.2"; sha256="16cqqc8i6gb0jcz0lizfqqxsq7g0yb0ll2s9qzmb45brp07dg8f7"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.26.1"; sha256="19z785hbgal81vywgvxbyr8k99fvyn434f1pzsh67rm8w47gnmv9"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; BrainStars = derive2 { name="BrainStars"; version="1.26.0"; sha256="0ki6jm4ycm3dzdv5fhv7nflpy4zifx364mlq02fq701hjgm36fwf"; depends=[Biobase RCurl RJSONIO]; }; BridgeDbR = derive2 { name="BridgeDbR"; version="1.16.1"; sha256="09xfcbf9ix25zm7djp306iz6vyx73giamslsndzzpsgcbmg0wadb"; depends=[RCurl rJava]; }; BrowserViz = derive2 { name="BrowserViz"; version="2.4.0"; sha256="09rdysgw9dxk5qpg7sxw0w3rpcrqjdibvwj3chcpgk6kv5ysfwgj"; depends=[BiocGenerics httpuv jsonlite]; }; @@ -113,13 +113,13 @@ in with self; { CAGEfightR = derive2 { name="CAGEfightR"; version="1.2.0"; sha256="1xnsbwjnirhh4dsfpxc8f16wxnvabr07yzbbizxqyna0h3hr61s0"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges grr Gviz InteractionSet IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; }; CAGEr = derive2 { name="CAGEr"; version="1.24.0"; sha256="1vin6inq3rlj365bhxpx28rp28isi7967r1plpdyi2lwx2f2d4im"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; CALIB = derive2 { name="CALIB"; version="1.48.0"; sha256="118sy35hi5p1nkm7ygh4pn7m3855vhywsj66j0v74iis00blpv1z"; depends=[limma]; }; - CAMERA = derive2 { name="CAMERA"; version="1.38.0"; sha256="0685lpqigi26w90j61xspdhwqjny2qkni8rvxsira51r705k9bwj"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CAMERA = derive2 { name="CAMERA"; version="1.38.1"; sha256="0mz6ahdyv3334v8fbqan8i6plkyz20smfq4p7hjphcybjfxxsizv"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; CAMTHC = derive2 { name="CAMTHC"; version="1.0.0"; sha256="1n2hn4snmlfrwr5c9di214sqvgmmihyxnbzbf0n2hx99rrjlzvpg"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; }; - CATALYST = derive2 { name="CATALYST"; version="1.6.0"; sha256="0h4r6fl6p52j5d6l9hh48ws27y8j41ccw7yj4ws16gsnm0hc2s4z"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra htmltools limma magrittr Matrix matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.6.4"; sha256="1ikqskvqrnkgz4rry5qj8is2b7d18lfy6df7r1v695pvd8x77z3w"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra htmltools limma magrittr Matrix matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; }; CAnD = derive2 { name="CAnD"; version="1.14.0"; sha256="0h1ry4z9g4daga7jqnm2wh631d4yzp738yf1vpxvf2d3f2qci8dv"; depends=[ggplot2 reshape]; }; CCPROMISE = derive2 { name="CCPROMISE"; version="1.8.0"; sha256="1kpz5cwx0bk55w8paldvmvmgprxsrgyqf8r3vxns136ksv1a1zhx"; depends=[Biobase CCP GSEABase PROMISE]; }; CEMiTool = derive2 { name="CEMiTool"; version="1.6.10"; sha256="0db77vjkpv4a62hl9ralrdimrb02aqjp4iq102z9yhnjh0abn3ld"; depends=[clusterProfiler data_table dplyr DT ff ffbase fgsea GeneOverlap ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr limma matrixStats network plyr pracma RColorBrewer rmarkdown scales sna stringr tidyr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.16.0"; sha256="140nalnr7r9v3a91slviqmin6h4ag0w1x2cysqin85zabv4xj1ya"; depends=[]; }; + CFAssay = derive2 { name="CFAssay"; version="1.16.1"; sha256="1l8l157df163cy4i6qc1q95x1pqc80y7dp5jf9nfssgbkls2dpfv"; depends=[]; }; CGEN = derive2 { name="CGEN"; version="3.18.0"; sha256="0p0c05axpj94v3gksy065244vlxh9q4g6ifv07jxrvl23ji4bnyi"; depends=[mvtnorm survival]; }; CGHbase = derive2 { name="CGHbase"; version="1.42.0"; sha256="0ghxp49xdi09p3f2qwrdrq2p4qjafj4z1rr08ycgbf11gb22h1sc"; depends=[Biobase marray]; }; CGHcall = derive2 { name="CGHcall"; version="2.44.0"; sha256="1k65kaiqvjyllzbpa2367n6f6kkmsy463kpflzs66hqhx2fshsmi"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; @@ -131,108 +131,108 @@ in with self; { CMA = derive2 { name="CMA"; version="1.40.0"; sha256="1v77yiqmvd90pxbs64xfpglwy006w88b4zrb5rk90r0vasnvdl5n"; depends=[Biobase]; }; CNAnorm = derive2 { name="CNAnorm"; version="1.28.0"; sha256="050yhjqqqm5kqjpw2ar8gf0yjqzmr0xzwa0c10dfry6hml63d6m3"; depends=[DNAcopy]; }; CNEr = derive2 { name="CNEr"; version="1.18.1"; sha256="1h8p7fibhyn7117qwjrl9f7y5cczv50qihzfd83pj76z5k5ylzry"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.24.0"; sha256="1bik2sqmjfmij20l9jxphg9l85xl61x5cpb5017p5vyhgyrm0mrc"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.22.0"; sha256="1kvr3jbxm95qg6pa3wfki2d8rg7cqwdd5bgjlb5yhapwll5xcz2s"; depends=[CellNOptR graph]; }; + CNORdt = derive2 { name="CNORdt"; version="1.24.1"; sha256="1frvylz88524nac6wk4r9j0wfvywzf8dq998pfnl9km7q4f888i0"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.22.1"; sha256="1h6l5lq0xqzh4y7mrq2kvnj3gpv3ni9c8qdn1wnrsa8q0i8xcs9v"; depends=[CellNOptR graph]; }; CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.24.0"; sha256="140a42s9h7li597y45z3dmb8y1nf53xxl7vnipi8k0rgcix465dl"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.24.0"; sha256="0chx9fgrlqwvlzjnkh45lr4qjfd1q3830kr3yjjniqrhr85x76zg"; depends=[CellNOptR genalg]; }; + CNORode = derive2 { name="CNORode"; version="1.24.1"; sha256="04zf8cidpw1f7zdyd7ns4x84jpdvbvkg5zifw0w1hri70n8yl8r4"; depends=[CellNOptR genalg]; }; CNPBayes = derive2 { name="CNPBayes"; version="1.12.0"; sha256="1vlbnlr63vv2s5nyndiqcb3kh737apswqqygwqn5pz6973nvlcl3"; depends=[BiocGenerics coda combinat dplyr GenomeInfoDb GenomicRanges ggplot2 gtools IRanges magrittr matrixStats mclust purrr RColorBrewer Rcpp reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; CNTools = derive2 { name="CNTools"; version="1.38.0"; sha256="038nbqgjahc9b646s9avxgccxz1qsly8vqj84dzqwgpyvx7hxqpi"; depends=[genefilter]; }; CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.14.0"; sha256="0fh94iv66li3zsnadxyxwzhs1jcz63vpmc6khp0srac2kzvc1kcs"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; CNVrd2 = derive2 { name="CNVrd2"; version="1.20.0"; sha256="10141xwwkzrkgkad8x5y1ha779b47vp7b2qk32hgw19ys4lraj79"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; CNVtools = derive2 { name="CNVtools"; version="1.76.0"; sha256="0xmqqq3j3xxm1pnldw6l3vnww9lfjlghvkrfzfbwxmq8gkxmyzji"; depends=[survival]; }; COCOA = derive2 { name="COCOA"; version="1.0.1"; sha256="1j53vvkh5y8icmzx7p6i33jw227wxdgsddqlb7wzjpdhv7x55c1j"; depends=[Biobase BiocGenerics ComplexHeatmap data_table GenomicRanges ggplot2 IRanges MIRA S4Vectors tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.14.0"; sha256="0g76myd81kbmda6j3bi9gzlj74bwg1z6lzwlsas644m2gi7xvy0s"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + CODEX = derive2 { name="CODEX"; version="1.14.1"; sha256="0k8x1k1m11r69dbzrxqx9b1pqi5x3pf1cxyf5j4hz7qsk8fncsnq"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; COHCAP = derive2 { name="COHCAP"; version="1.28.1"; sha256="1zn0skpi7h2nws877bj1van3358cmh88prvj9691kwcwj47h1zny"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.20.0"; sha256="1ghm2l3m7csg3jwwckbqa0js4hv7ksj67qdggr6w78pwypi8qwp8"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.10.0"; sha256="1gzxd2vbg68s53yv8g8nq63am6f7vzgbb21zpxvv61sagypycix0"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + COMPASS = derive2 { name="COMPASS"; version="1.20.1"; sha256="0jhi9dhyfdnc9fmybj2q9vcshkikn9rhcdzfr9hi2jizh7pa4w8z"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.10.1"; sha256="0w32gz85balsy88q17g303nbn1c8b2gp7cxqqx9vwsvzvd7d78p1"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; CORREP = derive2 { name="CORREP"; version="1.48.0"; sha256="1jg2j61f3cz7c7xf9wm96gvl5ykc8vbb14vhrbcmibjzxf7zfd1r"; depends=[e1071]; }; COSNet = derive2 { name="COSNet"; version="1.16.0"; sha256="1bw979xx2g17p3pisvbvskv8xq26pqrn9lcq8jh6av8m592b90gp"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.22.0"; sha256="0v8mz0bxrw6v43hsmiqq9xx1crfyy522m99fisf53j2dfy7m4456"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.22.1"; sha256="0lpvq8bjjcqz6zn4dnlxjs7vynqmq0cy7jcg9nypmrgjcn0pgc6l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; CRImage = derive2 { name="CRImage"; version="1.30.0"; sha256="11pzsg1bjsg12ad4vrp8slzr53nynb93i6j9zqgcvzh0dl004ss9"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; CSAR = derive2 { name="CSAR"; version="1.34.0"; sha256="0r8rqgz95bk7piwhgh4ljr8zvnvgxz7w7h7cjwqywsg259sf54sj"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; CSSP = derive2 { name="CSSP"; version="1.20.0"; sha256="06yzh3kgxwg512ycncxj0ann0m918wyij6xwyz0kskln2vsq84jm"; depends=[]; }; CTDquerier = derive2 { name="CTDquerier"; version="1.2.0"; sha256="0lpf49gdp5bj83sqv3hnaa4l3lib112m0h4k8zbjvjgkw6inn9wb"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; }; CVE = derive2 { name="CVE"; version="1.8.0"; sha256="0fjisya8iipc4ghslaw3di62mmi93v34w1c39a57mqk5gng2pzr7"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.2.0"; sha256="01042wxyi9kr4x9ga0vx957xqa2xns291w7h47f2v8d76yfk469j"; depends=[BH Rcpp]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.2.1"; sha256="1irbgmwfpsjyl8an06qs7x0nh4jrljhklkm3ak2sd13fgg88j73s"; depends=[BH Rcpp]; }; CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.24.0"; sha256="10768i5ijrwr7hcshk60r5w6ckqacqk3f9jhs3qkm2ic0g47vgwb"; depends=[AnnotationDbi limma qvalue]; }; CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.8.0"; sha256="1cg1im5p53n5afz0pzfg7l7wp6lm8cl0dr5x8di62va71n9qdk77"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; - Cardinal = derive2 { name="Cardinal"; version="2.0.2"; sha256="0xq765ajy884q8ldjd8cvyyy5k9ykhy1zhxwzhpmigvp72yzmg0j"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr matter ProtGenerics S4Vectors signal sp]; }; + Cardinal = derive2 { name="Cardinal"; version="2.0.3"; sha256="0i6bihd6g89841kwjrdawh99c79jm8nxpwrbcjw7yzr3jx440h81"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr matter ProtGenerics S4Vectors signal sp]; }; Category = derive2 { name="Category"; version="2.48.0"; sha256="1jdm83bwdfhpfm1y6hwgvxzj6l83h1bdkqv23799kzywnwm016kv"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.14.0"; sha256="0dm34x84zwyn0l508rbh1x9xqq5135q6i75z9m952g0fa8s1v152"; depends=[igraph]; }; + CausalR = derive2 { name="CausalR"; version="1.14.1"; sha256="0v4k8nbxjf9q092d029pvpy1f29zby8j60b89x559cr2m78zw870"; depends=[igraph]; }; CellMapper = derive2 { name="CellMapper"; version="1.8.0"; sha256="0qaw5pf3lgdkfcki0z2hp9g0b07j2khinwh9r0ajvji4j7hiwrw5"; depends=[S4Vectors]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.28.0"; sha256="0ihi72c7dshmv536lyn7ym4pr3cygzl6bwwd31q17qis3bhsihxg"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.28.1"; sha256="0ygpryc9sbj031lznlmhr23vgdqgyyyzjx6zbyv2nx703x9vrj3l"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; CellScore = derive2 { name="CellScore"; version="1.2.0"; sha256="0rc77c7z9nsid22yrdny6kd4yg6031njznsdvk6n82mv2sadk51b"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.0.0"; sha256="14iw57n4pac43iad7gd47jbvwcxh3k0fdamsxkbbrk36r1mcrbsx"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellTrails = derive2 { name="CellTrails"; version="1.0.1"; sha256="1x64c4fdwlbf57s4s6zjvpjy8jga7sz790gs6ll1d79smsw3ahql"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; CexoR = derive2 { name="CexoR"; version="1.20.0"; sha256="1pwjq3r7l9hinab38g2v5sjrnbhxva1jfjvh20wh75l2hzfjs62j"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.12.2"; sha256="0j3qw7kflj9q4v90w4f8h1a4g5d49932lswf7i1497z36yvs1m0w"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel FEM GenomicRanges globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChAMP = derive2 { name="ChAMP"; version="2.12.4"; sha256="197b3k61panvxw0vxf8qjj8l86q95mf9al055scpcf7sc6xwz0db"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel FEM GenomicRanges globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; ChIC = derive2 { name="ChIC"; version="1.2.0"; sha256="190jc1k318bk1xh93h726bxl0711qzn672lri3lwsrbjm76w8m1g"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges progress S4Vectors spp]; }; ChIPComp = derive2 { name="ChIPComp"; version="1.12.0"; sha256="1sypdsvwzssraanlhddhzpf9p0xs3qlflc0hp7yfbp0aplsifx85"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.18.0"; sha256="1pc7j9nfsjryjgxs6vi6hw2918h29rchbagxa2xdra0bj34i0605"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.2.0"; sha256="10hdk94b2j2aam7mjbdjygn86sz0az1hxvd7dkwh65lcvl6hvphl"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.18.1"; sha256="15pzxskrlskdib0pp7xacr90k54m8c1k5w334z86km4yndjpffpp"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.2.1"; sha256="0cy2099pc3vcjw47xigiq7qs8czfgaizlqyb5hy4j1lpr5c8qpia"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; }; ChIPXpress = derive2 { name="ChIPXpress"; version="1.26.0"; sha256="1b5ss7s8chjm8zgpxkwmghgf2dh1xn225y1qfad838gs0d2rmd5h"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.4.0"; sha256="115ycr6s5lb9888sz9xxdsip22vnbj1gfavrm61ks12rqf0ch2b6"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.6.0"; sha256="1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.16.0"; sha256="09fhh1355diip3v3c0skmp1336vclipkm5nv02qvp5902v4262y3"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.16.1"; sha256="1x98d8iwrxjwdz1s5cnvi6flynw9gdkmara9gwf205qxgmy7j3a3"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; ChIPseeker = derive2 { name="ChIPseeker"; version="1.18.0"; sha256="08d8m4svnyki4pg0mwy17p7wi7anw9ba347ck36x8lzbjb8xcmwg"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; ChIPseqR = derive2 { name="ChIPseqR"; version="1.36.0"; sha256="0m9xrb1aksmrh0zm6sa0nklwbn0mydz70dydhycfknv96l0rrxqn"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; ChIPsim = derive2 { name="ChIPsim"; version="1.36.0"; sha256="096dlqis3mcbhz837ys0n9yimgrh5fw5cpx16kjg9hfs48253nxs"; depends=[Biostrings IRanges ShortRead XVector]; }; ChemmineOB = derive2 { name="ChemmineOB"; version="1.20.0"; sha256="037j2hwmrbk0k2abygkrkmdshsh1c434dj0iqdmqsnbyyvv34q2m"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; ChemmineR = derive2 { name="ChemmineR"; version="3.34.1"; sha256="0pzvwaycvz61156ypqf24a42nhhmlhx2hccyra3g0jm97adm69iw"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; - Chicago = derive2 { name="Chicago"; version="1.10.0"; sha256="01w2z7jc2aizf6v149h5akvzm24bz9i476pfvhl17yhywkmnwsrm"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + Chicago = derive2 { name="Chicago"; version="1.10.1"; sha256="0m3fv8qgxaysnc02ndmk0bx0rk8ly02nivhn0hzgdh6vbrgqgzdr"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.36.0"; sha256="0ah133mzrwxdhfazpw41h2h0bz555al9yjlyhahm249d4wbdzr8d"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ClassifyR = derive2 { name="ClassifyR"; version="2.2.4"; sha256="1sjkrxak6sh2iq9wj5a9cjaq6vdvpfvlyp7g3qflfm31s5n4ajh0"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; - Clomial = derive2 { name="Clomial"; version="1.18.0"; sha256="17yplh5d2a96m17karvhr0n5jd0mck66whf8m3v4xsys75pspf83"; depends=[matrixStats permute]; }; + ClassifyR = derive2 { name="ClassifyR"; version="2.2.5"; sha256="1kgzkgj484l3c369qhiysnj2zl4sjavbg263jq2q7ynk54bkrivs"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; + Clomial = derive2 { name="Clomial"; version="1.18.1"; sha256="0m1s90syqm6ll61ii1zms1phrycfngl7r2s7d9lxck19imdg8svz"; depends=[matrixStats permute]; }; Clonality = derive2 { name="Clonality"; version="1.30.0"; sha256="0nhlrzy6z8kcfghw3ciy4ymbnmwb7y68bb1ikz7fxi4d5pywzm03"; depends=[DNAcopy]; }; ClusterJudge = derive2 { name="ClusterJudge"; version="1.4.0"; sha256="1yi3hcbk8ka9krrc2q8jv0sq5szpwp3iw3wnn8x9ibn1qyimzwc5"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.10.0"; sha256="1jwl2v9qja11rrdllqkc2hlqiirzcav7s6343d66qaajq02iagzj"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; CoCiteStats = derive2 { name="CoCiteStats"; version="1.54.0"; sha256="0ar66vhlw6zhrrf6bpd82hqwxh4g6apic56mx9xir40302ikc1h4"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.2.1"; sha256="1f51jf63h9axpxgyvgzlxq63hs88v4qh58g74s88cbjnl7rrjbbf"; depends=[BH BiocParallel cluster data_table gplots RColorBrewer Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.2.2"; sha256="18xkq64kn41v6dk2rnydq9aj1abvc6c5xv2j2xwdl94pc1n6hm3a"; depends=[BH BiocParallel cluster data_table gplots RColorBrewer Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; CoRegNet = derive2 { name="CoRegNet"; version="1.20.0"; sha256="1z8ihzn4i9zzn7cw2376j92cx1b0w543vr9f47xkhnsj871f2v6c"; depends=[arules igraph shiny]; }; CompGO = derive2 { name="CompGO"; version="1.18.0"; sha256="1hzps1isfpdmcxdlpfqhanl0qafydgsgjc5xqxgd8zvib4zb28za"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.20.0"; sha256="0s01dzcfj1lmpqfpsbqw7r4858krfzy499lz4cwx4fq3mbyvy2aj"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; }; ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.46.0"; sha256="00q1xbi7znfvvcqb1szqlw7zh4vvpf1si80k5zylys512ixg9sns"; depends=[ALL Biobase cluster]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.14.0"; sha256="0aamxafdk98n7s92jyqs65d6ljpnc2463vanvsw80p44qn6l6awn"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.14.1"; sha256="1hbiw0m9hmx4na9v502pxf8y5wvxzr68r4d3fqr2755gxx86qck6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; CorMut = derive2 { name="CorMut"; version="1.24.0"; sha256="1p4xj8f5hf1z31943s51inc0mc28bphzy5qs4ay2nccwshbypq0l"; depends=[igraph seqinr]; }; Cormotif = derive2 { name="Cormotif"; version="1.28.0"; sha256="0lb691mvr9zim7z5yplncmlzyr799jym1wvrgfm1diqjz2daixai"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.10.0"; sha256="0v10145s9qplg8qd4vd7p6kq1x7dndbiw5i06mjnan1qgwc994n0"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; - CoverageView = derive2 { name="CoverageView"; version="1.20.0"; sha256="14zkmpc2zmashx987qa61y9db0wgfywgg6cinwjk50jsica6l40y"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.10.0"; sha256="02fyl6gap84pppfqp3wjhx86i7h54qyfrjdx9gs0wbypp0ia47j5"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CytoDx = derive2 { name="CytoDx"; version="1.2.0"; sha256="1h037kwxdldcg8g9diaj414sz1mrr15zq8wkxzhjj74qzazm83nl"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoML = derive2 { name="CytoML"; version="1.8.0"; sha256="0iljvwys5cx4rvmphf3nwha1q32qrxd8kwhrgkddqbig9s0iiq0h"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; - DAPAR = derive2 { name="DAPAR"; version="1.14.3"; sha256="1j9zcifwmaw3zq8cn8114r2z902s3d2b8811dng5039w3d8cd2s2"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr factoextra FactoMineR foreach ggplot2 gplots graph highcharter imp4p impute knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot vsn]; }; + CountClust = derive2 { name="CountClust"; version="1.10.1"; sha256="1b129r97wv3gm25pk3ccg5bmp2476jyhz1pphapqlrb1im3fixq6"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; + CoverageView = derive2 { name="CoverageView"; version="1.20.1"; sha256="164lla4v6ll0kqzapm3kmwz39k5shl0cwwashpbwiixrrxhcy8d2"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.10.1"; sha256="0n1mw3ybbdaybbcms12cj4vy21wahq5srny0qnbxjlzyl1zjbpr0"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CytoDx = derive2 { name="CytoDx"; version="1.2.1"; sha256="05apvaf4dmkdfsp2aary14i7znjyzk0k6rqcbsk6m98fkp3d9r8b"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoML = derive2 { name="CytoML"; version="1.8.1"; sha256="18isg4kjdn975q8vpziisnyxj1jxm4lkq7hi9jy4imf7bffc234i"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; + DAPAR = derive2 { name="DAPAR"; version="1.14.4"; sha256="1qagp6sl4apld3h20sjrbn6pkdr9fx3yznrzlrxgn216hd0b3yjf"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr factoextra FactoMineR foreach ggplot2 gplots graph highcharter imp4p impute knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot vsn]; }; DART = derive2 { name="DART"; version="1.30.0"; sha256="0dxwy95p43c0shx30y95sj1pl64kqkh2bsnj680q196zgyg937s6"; depends=[igraph]; }; DBChIP = derive2 { name="DBChIP"; version="1.26.0"; sha256="1wk8nvfcfhsymhbi6id0kd1jzcykh6hhikl2040g0v6gi252gv2v"; depends=[DESeq edgeR]; }; DChIPRep = derive2 { name="DChIPRep"; version="1.12.0"; sha256="1avcjr7r54grh3yn5pjbzji3syc8vvah9as7asv3cwmyqzaya4r0"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.10.0"; sha256="0qqk5wjv42sjs986dkzdkcqj1jy662p7mkvbi951kjs8sf1rk75r"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.10.1"; sha256="1qvdlw0had47p2mldahfppwk4c9nqvswqg8qjkg8nvqckb9aka10"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.2.0"; sha256="1a4m4xs8dd0459vh5bhi96w6vchmqgap3snrj8x6jjlpvkkhwl8l"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; DEDS = derive2 { name="DEDS"; version="1.56.0"; sha256="1zfgaar3bpss49zhs81mwlfzkx5lv92j8a64xd12ig88is24cw2c"; depends=[]; }; - DEFormats = derive2 { name="DEFormats"; version="1.10.0"; sha256="0m1z6w5w98lhcc6w8z9a5qzjp24bv4ygkjnx2mr734s65swlbkh8"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEFormats = derive2 { name="DEFormats"; version="1.10.1"; sha256="01zhxi2gpbdbfxxh8myq7930rk2zcwdchdj7xa2p4hrl2mzhr7c8"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; DEGraph = derive2 { name="DEGraph"; version="1.34.0"; sha256="1vrv3lkda2dhcb9ig38xv0bvnk68z9bpsxr4846fq31dvxp6b5al"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.18.0"; sha256="1yvm1ci8kv5yqw5lzlz0q2zzi1x4yhz96y1a9ifiam21msg5mxa4"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGreport = derive2 { name="DEGreport"; version="1.18.1"; sha256="0fzxlx1bqcggya5bf7s0w2g368hzcjamq33z8mfj23c1d4dm0jmy"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; DEGseq = derive2 { name="DEGseq"; version="1.36.1"; sha256="1p4ldk2wagsnjbxrq3s6fa3l6phqp77hjwv43gbdsh7ph8rzd33g"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.4.0"; sha256="171571da6vqid9lp9djbncyr4pwmg04vvrrd8f1kgd09994whz20"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.2.0"; sha256="02j2jp1q2sjnlagr7z6nz24imalrl0hcmaffbyzakls3ha4d9c11"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq = derive2 { name="DESeq"; version="1.34.0"; sha256="1klv1xrh3173srywr6dnq6i7m9djn4gc9aflr1p3a6yjlqcq6fya"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.22.1"; sha256="1b2bmvcsfzvks47d7w46zplcwz0kgcdhx5xmx3x9lp2gvx2p84r5"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.28.0"; sha256="0jh1640cnzpk8x3155cqc8dvrs1rciw3d6nv2k70baw96bhrynp8"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.0.0"; sha256="1x17m172k4s92mbsb8pn4x3yskmqv3km2gs7alykr0dh2zfgwnzh"; depends=[ggplot2 limma]; }; + DEP = derive2 { name="DEP"; version="1.4.1"; sha256="0adwq2lgnqf29p1ylq4mvqx16g45bcs79nhsknkl9ph3i7g2slgj"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.2.1"; sha256="0l47x2yrxcyj0mfz972acyw2v9n08ib859jb3v9qasrbw04qnvwk"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq = derive2 { name="DESeq"; version="1.34.1"; sha256="0bpiixczbhlyaiinpbl6xrpmv72k2bq76bxnw06gl35m4pgs94p2"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.22.2"; sha256="0n5ah84mxn87p45drzy0wh2yknmzj1q5i6gv0v9vgg1lj7awb91r"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.28.1"; sha256="0g5w9bn2nb3m670hkcsnhfvvkza2318z9irlhhwhb3n8rdzlsdym"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.0.1"; sha256="1869msy07xh9y0yr0mskrkpmzmf4x3vdarvn8wi78hk1scq1zk71"; depends=[ggplot2 limma]; }; DEsingle = derive2 { name="DEsingle"; version="1.2.1"; sha256="0w3b7pz04l60hrbw4k7rkp4xmf8hzxca7pgrjyalf946z6yvky0s"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; DEsubs = derive2 { name="DEsubs"; version="1.8.1"; sha256="0whs5q02lgis04zyf6abd9b5phv3bw508k4ngp197ka02pbpvxxz"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; DFP = derive2 { name="DFP"; version="1.40.0"; sha256="12kb7cjsfdscdwanjbzvwgp1ra0kmijrp1qyx87sxsk4hxk236ml"; depends=[Biobase]; }; DMCHMM = derive2 { name="DMCHMM"; version="1.4.0"; sha256="12jn77dxbcbzbfdsy4l1vycf68bnw2wdhrwnnjc3829arcz2mkph"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; DMRScan = derive2 { name="DMRScan"; version="1.8.0"; sha256="0vwmkw3abs0v8z49qdkrqxia0kn5i3pl7yqzv42l5xz7d2498s7q"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.14.0"; sha256="1ds6paic8g9gynqqy4mciycr6apyxjagwiasnjcpw0j3j1l8rki6"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.14.1"; sha256="17rnqk46ic6y8hz86cl3vfbgqxswmkl04qzgx5xn9npwwbhvp1nv"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; DMRcate = derive2 { name="DMRcate"; version="1.18.0"; sha256="0930rrz2aps91mcqihap9830km9x7if6vgpvjplmacvs1x2k3wyh"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; DMRforPairs = derive2 { name="DMRforPairs"; version="1.18.0"; sha256="11gbnxlkgkx9ynmslxvinfnq39rpg392zbff6g36fd5nsr3dppxd"; depends=[GenomicRanges Gviz R2HTML]; }; DNABarcodes = derive2 { name="DNABarcodes"; version="1.12.0"; sha256="0g6j7ish0fk9jcib94wssjgp1m8ldcp42hyyg1ypr945fa3xghx0"; depends=[BH Matrix Rcpp]; }; DNAcopy = derive2 { name="DNAcopy"; version="1.56.0"; sha256="04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"; depends=[]; }; DNAshapeR = derive2 { name="DNAshapeR"; version="1.10.0"; sha256="1rplgi36jn33npihhmk0vdsiali814y5v1wz5fdna3k9b47id6b6"; depends=[Biostrings fields GenomicRanges Rcpp]; }; DOQTL = derive2 { name="DOQTL"; version="1.18.0"; sha256="0ligqm4l2x5dz794djapri770j27rhibhdzc48y980768gjpkm8k"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; - DOSE = derive2 { name="DOSE"; version="3.8.0"; sha256="1ipdyzwk8znqmm1gby7ib8g5zsgzdjpv420ld6jmp7kz9x9pk1yf"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2 S4Vectors]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.10.0"; sha256="0yjhp1rfczs1f8931n0y9f136hyqacdak2z5f9n60n8zbfkca170"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.30.0"; sha256="02q74s98k52bvql5bpk5yri137jc4j8lr3a1bjdbna9r5cl1v0dq"; depends=[Biobase bsseq DelayedArray]; }; + DOSE = derive2 { name="DOSE"; version="3.8.2"; sha256="1gh7dhvfc71kawxcfx8xqlir7mwvg5mmz4lqrdrvw5knvi2h3mfa"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2 S4Vectors]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.10.1"; sha256="021xzx7ndvjdahi715qvq2xxnnhdsn9h8g6imps5ls3qmk5024d2"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.30.1"; sha256="0m18793vqaqamx3rj3pwrirc7ygmmg4774il8d59qmwinlppyxqw"; depends=[Biobase bsseq DelayedArray]; }; DTA = derive2 { name="DTA"; version="2.28.0"; sha256="1gsc6sbi1awi92w1wnqddybz2n2n8f8pvsg95sp90xp11sjrnvvx"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="1.6.1"; sha256="08pibsbipbqpn77q3j3ky45l5fycydba9ll8wfllmxjqj2salcfh"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="1.6.2"; sha256="0kllq3wndg7p96lqls4xsqdnhrwryry96qxbz5myvdrzywmfppkv"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; DeMAND = derive2 { name="DeMAND"; version="1.12.0"; sha256="06hip99jzi5z89v1mprmqxrziv1zf6lysmg6ixsxaq8f0l9x2m38"; depends=[KernSmooth]; }; DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.24.0"; sha256="1j5mlnx0n3xn2agnp2wwdbyyf36lh277giapz0sknlnpfdhzc4jn"; depends=[ggplot2 limSolve pcaMethods]; }; DeepBlueR = derive2 { name="DeepBlueR"; version="1.8.0"; sha256="0gc1g4w1finbv8ash79x6nsmvjvx8vz44dr0dpx1vmdfb54qlz3c"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; @@ -241,45 +241,45 @@ in with self; { DiffBind = derive2 { name="DiffBind"; version="2.10.0"; sha256="0j8pal40lr1gv8sss96hhkj7l1qn9sy4q4l2kqd4rfwl7qrcnfw5"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; DiffLogo = derive2 { name="DiffLogo"; version="2.6.0"; sha256="1an8c2h0vsy8x3q90bgy7gfigz11k460gpi4wlyj6gq8h6bd1fmy"; depends=[cba]; }; Director = derive2 { name="Director"; version="1.8.0"; sha256="0xzds7gi9bp6hp8dpw9c4ls6b1rcfk4w4my1wacf0z9hnwpd60r3"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.24.0"; sha256="19bzn0a5jal1xv0ad6wikxc7wrk582hczqamlln0vb2ffwkj1z3f"; depends=[BiocGenerics IRanges S4Vectors]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.24.1"; sha256="0vazfjzqy78p5g7dnv30lbqbj4bhq4zafd2wh6gdwy2il1fd78xa"; depends=[BiocGenerics IRanges S4Vectors]; }; DominoEffect = derive2 { name="DominoEffect"; version="1.2.0"; sha256="08wrblpsliyshdv8kldr8mwp3zkkr1255120vy780x6b2n6jczsz"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.4.0"; sha256="0m9x9cyz6lqrfy1gzv6psl0758ybjyr0bry20d4ily6wcmr8xgwd"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + Doscheda = derive2 { name="Doscheda"; version="1.4.1"; sha256="01k95cbkwswpnzc53rszsnk55bx6xisdj5i8211h8zgwjsikryik"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; DriverNet = derive2 { name="DriverNet"; version="1.22.0"; sha256="13yd9inyqkaw363m6apiyclkjpb3f5khbi0vwc90whi8q9wvsl8f"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.2.1"; sha256="17dcc4w6dm90cmgz08izhjxggasbj400mhww5c1m18nhq7840w07"; depends=[beachmat BiocParallel edgeR HDF5Array Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.2.2"; sha256="0kxfhd7r2r1p0bmzps0d965l84fk63lc1shqywll5rx0scnhlcsw"; depends=[beachmat BiocParallel edgeR HDF5Array Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.24.2"; sha256="17x0smsb1kdj87ndw0dakqjb4c2dq2kkv5z8cs3i4x87hz56yrbd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; DupChecker = derive2 { name="DupChecker"; version="1.20.0"; sha256="114g9qx4v2lz521pndha3gk0cl2pq1jxqw1z9pzijgdj9lyj0jzv"; depends=[R_utils RCurl]; }; DynDoc = derive2 { name="DynDoc"; version="1.60.0"; sha256="0k18f07mg7hg085l0pi5j6l8c04m5zd6jx3ha6cpjv6nd0m2lljw"; depends=[]; }; EBImage = derive2 { name="EBImage"; version="4.24.0"; sha256="18v2zr7xh0d0xbs7mxa2b6xjqlqiml0hji27gq1351xp5bf2pxvx"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; EBSEA = derive2 { name="EBSEA"; version="1.10.0"; sha256="1cbc21a6habvlslavdpn5v1nxkdhcpqp27fwg5y7hy9c8fqixqq0"; depends=[edgeR limma plyr]; }; - EBSeq = derive2 { name="EBSeq"; version="1.22.0"; sha256="1z8armk0b30dipx232m51r36vk750zyk3z79f57yq0a1azwpp3vn"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.16.0"; sha256="0b5cd5i09d48fyncfcjc6wnpjnrxr4jccmx2k94jfhcnmmbyjjf9"; depends=[EBSeq]; }; + EBSeq = derive2 { name="EBSeq"; version="1.22.1"; sha256="1gzbk1hbwdan0j131ah88yryfvsiq0wqjnb09qbr4qaczpgvbad0"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.16.1"; sha256="12ml7qlsf7mnib88lm3q6lb3b34yfj4fgvp9c4vmfj62m88m17xw"; depends=[EBSeq]; }; EBarrays = derive2 { name="EBarrays"; version="2.46.0"; sha256="1qz1z9v3dc0rdwm33v47avvgvqfxhbzw34idcxa1ap7ynx9c2sqs"; depends=[Biobase cluster lattice]; }; EBcoexpress = derive2 { name="EBcoexpress"; version="1.26.0"; sha256="12hh2qvv0jfpsd8jz41jvzs605mccj35c5rz54697lgi7pdhwm4l"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.16.0"; sha256="1gjqzn1kg9qwyz2gwjyy9xzzr1lnc7xd5zwdyvzkadz97gckzxwf"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDDA = derive2 { name="EDDA"; version="1.20.0"; sha256="0yjnwbikclc912wh75gs8h633vc16ldjpf7p4gi76b70qzlf8gzv"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; + EDASeq = derive2 { name="EDASeq"; version="2.16.3"; sha256="0559ph606ps2g9bwbl0a2knkcs5w581n9igngpjxvk5p56k24gb5"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDDA = derive2 { name="EDDA"; version="1.20.1"; sha256="1psyzqsksmv9w3wwj8h4x1ywkkhk05z71afdxh57lhlh0y4vf6fw"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; EGAD = derive2 { name="EGAD"; version="1.10.0"; sha256="1krwqspyw63zddgksvjvcidfzcxv9165p5dl3cgh1qsb3s427gla"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.10.0"; sha256="1jcbskcadfjyh1iq1appbywfqdvd66q13gg5bhhcpfiam4may1cn"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELBOW = derive2 { name="ELBOW"; version="1.18.0"; sha256="04i3nw6vrmjld0nypp6xxbq8wxdbpjryc6rsvb13j5jaxak7yjcw"; depends=[]; }; + EGSEA = derive2 { name="EGSEA"; version="1.10.1"; sha256="0mimy2k7z3zyxksyax8xbl4yk48986b88x7vnfd2hlhibdcc1wg2"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELBOW = derive2 { name="ELBOW"; version="1.18.1"; sha256="03jk906v6my6xf85ki2af8kd540bjjgn76xq4w38xc4dpfmpypla"; depends=[]; }; ELMER = derive2 { name="ELMER"; version="2.6.1"; sha256="1675yr1f54cqyzir8rswndgcxb0pjb3c4bka9kdgfnjynk8w7ssv"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rmarkdown rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; EMDomics = derive2 { name="EMDomics"; version="2.12.0"; sha256="1savm8vh1cl8s9rw5jy341a6azx1d8pm0935jvl10ai0cs6q1f22"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.8.0"; sha256="1836v5yj5rr3mvmsakbz5ccqc0h3dngipigszbrzcb2qb9m55gqf"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; }; ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.30.0"; sha256="0ciilgg8mw4lzclfqqgfrc6crig15m418qfpcfk9s4ykcnjzzial"; depends=[rJava XML]; }; - ENmix = derive2 { name="ENmix"; version="1.18.0"; sha256="0hl5k7ng0mrs7bqjpi693mdfa31l6lvflflz7cs80l7cr82h4raj"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; }; - ERSSA = derive2 { name="ERSSA"; version="1.0.0"; sha256="1dlz57mmh166di7rp0ps322qdy0f4r5xdkn6br2594g7s2a3f5qc"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + ENmix = derive2 { name="ENmix"; version="1.18.1"; sha256="0yrpdg6zx9hbrv80j0fbdf7p75qjl678jn7g73q0mlxgx4pg2fxs"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; }; + ERSSA = derive2 { name="ERSSA"; version="1.0.1"; sha256="02g7kp2g3jxk9fy9fv2b1pkzc46067jwzq4p340w9c8ss8hrpqwh"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.24.0"; sha256="1znawlhb44j21jhspn703d62pi1zknv1khklmsdlspn5db67wpin"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.10.0"; sha256="05n0984x77kvxjj80vx4sh7sz2v90wzf4vqsgbkn7wm45ly6x3h0"; depends=[]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.0.0"; sha256="0n87yacfrydxrr7rb5f5bkwdfxl7ga2xcj3rn012zy0kknzpcj3z"; depends=[ggplot2 ggrepel]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.0.1"; sha256="1z7rv5na9j9s95zx0l61ncxxv5a452p0xqfk7p1bdvl3x8ags4mq"; depends=[ggplot2 ggrepel]; }; EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.12.0"; sha256="1bg3nrlsbfqvkrmwnwyilaniqzkaf2mirdjq58bwvz2022lwyzyg"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.12.0"; sha256="0v1c8w28z77z4h944gzdg4p938pd31j0r44mf4x485ps9ah2qhai"; depends=[AnnotationDbi BiocFileCache biocGraph BiocManager ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.12.1"; sha256="1jpmwlhdq99rgfk24pj0q72rnsi216i0yzwfc1v959v3p9132qq7"; depends=[AnnotationDbi BiocFileCache biocGraph BiocManager ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; EpiDISH = derive2 { name="EpiDISH"; version="1.4.1"; sha256="1qd4sglib4852igc1hxrrxsr108mil4mj4xxmf61fz45cxq0v262"; depends=[e1071 MASS quadprog]; }; EventPointer = derive2 { name="EventPointer"; version="2.0.1"; sha256="0rx31xj13m340m1jfms4bzb5c6shmnh4rrzlv3qcjf6zfgh3n118"; depends=[affxparser cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph IRanges limma MASS Matrix matrixStats nnls prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment]; }; - ExCluster = derive2 { name="ExCluster"; version="1.0.0"; sha256="1vw99avx3d5zwpjzbv28qj4yrzj6bbz82w1qr9pagjam1d5mxhlf"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExCluster = derive2 { name="ExCluster"; version="1.0.1"; sha256="0msz6fd81gyvix0jmh5mnpp4kfhkj6whl0q5l905abnncn2mfgpr"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; ExiMiR = derive2 { name="ExiMiR"; version="2.24.0"; sha256="1nyyvznjvp9rrgzdp63klq3gah8w1qvgi4hkjf9icwc5liszr48j"; depends=[affy affyio Biobase limma preprocessCore]; }; ExperimentHub = derive2 { name="ExperimentHub"; version="1.8.0"; sha256="1cxdkzkb4rkzsxcva9ich7p9ysdhijqrmacq1hvciyjrj0ql69w4"; depends=[AnnotationHub BiocGenerics BiocManager curl S4Vectors]; }; ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.8.0"; sha256="09b64x0rh6j83cwvv0hbwydlcxyp032c8m3h20k8kylkpiyx3csq"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocManager biocViews curl DBI ExperimentHub graph httr S4Vectors]; }; ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.10.0"; sha256="0ll7nhzqn25jwfkxg7cq156hhaiwdcm3fbbwy4891fb8pl4fj81a"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; ExpressionView = derive2 { name="ExpressionView"; version="1.34.0"; sha256="0rar2h2qfhqbxs4haxfm6gfvhdmlr1wdp8ashkxkpx97svd4pa3x"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; - FCBF = derive2 { name="FCBF"; version="1.0.0"; sha256="0790n8daxwkyas9rjxqwm0pjp7h6584k4sbj54c6146virjcqbk2"; depends=[ggplot2 gridExtra SummarizedExperiment]; }; + FCBF = derive2 { name="FCBF"; version="1.0.1"; sha256="0j5znaw4v0mcz5jyqfm9v599sn472x73x6b9a2jxgynzhnvkbyiq"; depends=[ggplot2 gridExtra SummarizedExperiment]; }; FELLA = derive2 { name="FELLA"; version="1.2.0"; sha256="09ljq7wfmm30h93k3ig4iqa7hq13lv961s446wiq0b5yi9s0y72g"; depends=[igraph KEGGREST Matrix plyr]; }; FEM = derive2 { name="FEM"; version="3.10.0"; sha256="1cqba4j2ajyrjyqwp3q2f89afx74603m5pbsjgflc8zfpf498rgl"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; FGNet = derive2 { name="FGNet"; version="3.16.0"; sha256="12wv1r60nga4llvrx6blv9s6vlpcy22rz72qbf0ixpf16g16yc1x"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; @@ -289,8 +289,8 @@ in with self; { FastqCleaner = derive2 { name="FastqCleaner"; version="1.0.0"; sha256="0v18zhzh8xd5b7828nnvlxc8gzwjgc9hnhznjd3w62js2yg9xv4l"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.12.0"; sha256="1yyzqw9hzyxh2sjw8wj3xi5cvkcr9ssnahhwaqrln5zsiq72kn70"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; FitHiC = derive2 { name="FitHiC"; version="1.8.0"; sha256="15xd8mz7660q4zr9p74mq1pqps4iz7pxp8f9ifn21gwg94aq1avn"; depends=[data_table fdrtool Rcpp]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.14.0"; sha256="1dz0r4f21xhfi6jkxq33y85ayg5jbmic8zyxx5ry7fs6rjx4n75d"; depends=[jsonlite RCurl XML]; }; - FlowSOM = derive2 { name="FlowSOM"; version="1.14.0"; sha256="1inbc49acj02v6rxbk8kzlvi09a61cgkn5rs18zzx7wls9mpqwkv"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.14.1"; sha256="1j059f4hl41kwi6dcjmk8q0hlas7szlzgrvpjvjjcc466c074jhl"; depends=[jsonlite RCurl XML]; }; + FlowSOM = derive2 { name="FlowSOM"; version="1.14.1"; sha256="1s0yjg3jz4v7h60agwzchxa7xzmxszxawcqip4yhspihjpldiw0q"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; FoldGO = derive2 { name="FoldGO"; version="1.0.1"; sha256="193bxmsv37k9cj1f8f6qmy1yq74qap18fk46id229ydfp5sd57wg"; depends=[ggplot2 tidyr topGO]; }; FourCSeq = derive2 { name="FourCSeq"; version="1.16.0"; sha256="1mknsjif4rv1wg5whv8dvkam2fblm2mnvj4qzv12ypnay0hdj8jq"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; FunChIP = derive2 { name="FunChIP"; version="1.8.0"; sha256="1b8a2hd5i4zwq28i7zwz8g3b9w2wgrhdrghr70z5n62cxdrbdwd9"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; @@ -298,12 +298,12 @@ in with self; { GA4GHclient = derive2 { name="GA4GHclient"; version="1.6.0"; sha256="03jk92nrd8n34z0kb88qsv7pxwwrwy7vjhczxz4a9mqwsb2gv891"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.4.0"; sha256="18g9bhn9wkmfw4f55lly97hf00f6ngh560b87nxyx0c9ls0a6wyg"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; GARS = derive2 { name="GARS"; version="1.2.0"; sha256="1i9dfh9g4sx40r8jdwiv81609jgpaby38hvrvgcf6bw06hip6da4"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.8.0"; sha256="0a56jgw36h1fcpsclb36hwg612qv0qpxqs6smz4pq8s4apcdvzn0"; depends=[glmnet Matrix]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.2.0"; sha256="0d33sbyc3zn09ak6wzi6qdpna2c65lmdn1qdqhnb94saiaw4x1zk"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GAprediction = derive2 { name="GAprediction"; version="1.8.1"; sha256="1aybcbaxbwfd9fd1ivkfmhwsm3w9237bf1kph40kdis4zhvf7g1d"; depends=[glmnet Matrix]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.2.1"; sha256="0gwf534xkdg9ajlmhaicpl51kyk74hy7inp83nq4l6gr238x0q85"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; GDSArray = derive2 { name="GDSArray"; version="1.2.0"; sha256="1yjrdnkbgxdfs5i2s10idy3szc9p6fcq6mv246hbsibl6zxxlqlh"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; GEM = derive2 { name="GEM"; version="1.8.0"; sha256="008y135dahsrbk2ik5b7hrsjkhg23cxmsfnbyggm000dap6j4a3w"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.12.1"; sha256="0w3wvi3h86xg14lbhzwcxi41yqba58qfsgaix5vdx6r3jnp073j0"; depends=[Biobase BiocGenerics data_table dplyr foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.4.0"; sha256="0aks72imjyqxilfj1h9p8hqvkq9hipk2kb503xmclrhgma07195p"; depends=[reshape2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.12.2"; sha256="00mma6i20z0q0w4vjziqnll6dzdnx3h2rzxrzrhr0ylwy206hyxd"; depends=[Biobase BiocGenerics data_table dplyr foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.4.3"; sha256="1wbgfmv2266djrl71cnhgs89ariw9fncf0kbmz3ps6rc4cm0cj77"; depends=[reshape2]; }; GEOmetadb = derive2 { name="GEOmetadb"; version="1.44.0"; sha256="05iwq2qglkc3xdkvc1049m1mzyiw91dmfb41vkqbqkyw7jc4561h"; depends=[GEOquery RSQLite]; }; GEOquery = derive2 { name="GEOquery"; version="2.50.5"; sha256="074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; GEOsubmission = derive2 { name="GEOsubmission"; version="1.34.0"; sha256="1wiaik74yr84jppvq3hqijha2z4m3jr77q2k9zsr6kw0d82ianvw"; depends=[affy Biobase]; }; @@ -317,27 +317,27 @@ in with self; { GOFunction = derive2 { name="GOFunction"; version="1.30.0"; sha256="1rsx1nkxyxd4dv4bn4mm1wyq6l0qn7a1gm60j03y9h4idp3hrgr8"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; GOSemSim = derive2 { name="GOSemSim"; version="2.8.0"; sha256="0ckihpy8jmgn2np1avprz76v9z7i5hqm2gj514c6dmmq3csbc7ib"; depends=[AnnotationDbi GO_db Rcpp]; }; GOSim = derive2 { name="GOSim"; version="1.20.0"; sha256="00pl7xhs7mskkkmv45fcr448gbvr92v7xc43y0wyj3zrjh1fdm11"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.18.0"; sha256="0r699dy31kvq6rw734v30jsvna18fnk1by2qmj2gjqyjmkfj1hp3"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.16.0"; sha256="0b6fvbm7bj08m4in892qdpm564iki0d56a9jyhg8d8pdmrp960rb"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.18.1"; sha256="12gagxspz8d0w9yng6bvkckvws428m36589drj4mz7pjv3gyy2j3"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.16.1"; sha256="1fh91vh3q6wzgnc71arpl7ahsk868sc3k4h6y9asch4dlhm9qzvh"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; GOfuncR = derive2 { name="GOfuncR"; version="1.2.0"; sha256="021kgcbm8n2yalhzab11cyppwznlkglynnh45wsgy9i2vi2n2znk"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; GOpro = derive2 { name="GOpro"; version="1.8.0"; sha256="1z2lyhnzqvrqfjzavwriaxxzbvbjhjaciyr9azkq296mj3cdih3v"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; GOstats = derive2 { name="GOstats"; version="2.48.0"; sha256="0wlqqgfynwqnqhckhsfjwg9zkj6hkmzwd5y76dhqz720vy21rcln"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; GOsummaries = derive2 { name="GOsummaries"; version="2.18.0"; sha256="0cmb08w5xjqpdjqjkrwqdfiyf1sfj1xqqlyjq9hv0ynjab6skhvm"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; GRENITS = derive2 { name="GRENITS"; version="1.34.0"; sha256="0a2wdsaga0k5x37qad53fdvpp4smmpkfp9f7vy8r9mvr69j3ji9n"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.8.0"; sha256="1ziarcrdhcy5n145m0hjmzwz14k79pdysn0n5qda4nlvd5dpl0hr"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.8.1"; sha256="1ak5n76ig3f1bl60in01dbz07vgs2gd65dq18qgrd07dyd20f6xs"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; GRridge = derive2 { name="GRridge"; version="1.6.0"; sha256="0l6r36kzdmgcamjzzrjchz0q4k9dsxvmdvrrnq1br1xlhgscqc85"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; GSALightning = derive2 { name="GSALightning"; version="1.10.0"; sha256="0d1zfxzhcgb6h6p8pcfra9ck031n4yb309m17zbql1ld911nv297"; depends=[data_table Matrix]; }; GSAR = derive2 { name="GSAR"; version="1.16.0"; sha256="1jdjr432i0njpfmymzbv4irf786hrp1wk4vy4sk2x0hcbjigds5z"; depends=[igraph]; }; GSCA = derive2 { name="GSCA"; version="2.12.0"; sha256="08j8n9hjaf872c1n7ilzhm96d0hb4qa6l30qq516jpynxf326g2w"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; GSEABase = derive2 { name="GSEABase"; version="1.44.0"; sha256="110al7x0ig8plzrprvhwc7xshi1jzpj2n8llhhg2fh6v6k0k6awr"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.2.0"; sha256="1b55w2lc5qfzja07i3ddgnll3dm5f4df8x5nkfy034kdmpmvzkma"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.2.1"; sha256="142x3mx8cknca82hj93l397566rliqmq9z888v1b4ip0vd87qk4l"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; GSEAlm = derive2 { name="GSEAlm"; version="1.42.0"; sha256="16xflz0ad07qy3cl9r4qvi98hlxs2j9wm7dsbw518qkacynpc29g"; depends=[Biobase]; }; GSRI = derive2 { name="GSRI"; version="2.30.0"; sha256="16zxia3ksgx14rafkjbxbic2rnskh7hql7ifi45n8gg0mkhw535c"; depends=[Biobase fdrtool genefilter GSEABase les]; }; GSReg = derive2 { name="GSReg"; version="1.16.0"; sha256="08fasaa8inivgs3li8z0yhs2qaa878lrjymk67f8622wlskvmqcd"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; GSVA = derive2 { name="GSVA"; version="1.30.0"; sha256="0q8jwmxv2w5m7z4i7ggdzm2z627484vn5rm0qfxkkqna3hpjnl4i"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.12.0"; sha256="0lv59ppr2g5n96mjhllkg6maq9xrm3yd9a98pdrg1w7c40251bxk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.12.1"; sha256="1z6y53z58rmvhaw0qd69xfh45fjcmz0r5m02l3lxkxr7b2ca3vcf"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; GWASTools = derive2 { name="GWASTools"; version="1.28.0"; sha256="1g039bg6pcbxnz9zyzknrl9qx6wzncqjw4lpiy1lq4pc91lqzjln"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GateFinder = derive2 { name="GateFinder"; version="1.2.0"; sha256="16whipxykribkcyjar4xxg5736zkb256vy538a4q1hz52dz44s59"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GateFinder = derive2 { name="GateFinder"; version="1.2.1"; sha256="1figmf8cpz1mfrcz69jfrxprl88aw01jb30pq3bi2n1r3dyvyxzp"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; GenRank = derive2 { name="GenRank"; version="1.10.0"; sha256="1fs9kfpm1xcdkyfc52hyysxwdb86aghcgig0jam3cvvfgnpm4xk9"; depends=[matrixStats reshape2 survcomp]; }; GenVisR = derive2 { name="GenVisR"; version="1.14.1"; sha256="1c49fgh4k5018xg0cxy2vx2lz4d9s8xm1kv2b2834cjviianzvhz"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; GeneAccord = derive2 { name="GeneAccord"; version="1.0.0"; sha256="1g1rjgvqnf3bqa4phj0q4gzrm3y6ijbxzyjz83ilwdmwxd4vs5rw"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; @@ -352,29 +352,29 @@ in with self; { GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.38.0"; sha256="1f266nq1179gyxqwn0pbbwia04hsshs4653flgm2730cyczq58ki"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.26.0"; sha256="1kv81bn9kr3lf41zhixr56ipsxf2ig1zny742494r3j8d4wi947p"; depends=[Biobase limma MASS survival]; }; GeneSelector = derive2 { name="GeneSelector"; version="2.32.0"; sha256="0hjrwj7z67j6rmfvcd44j4284v3dq7qjcm24arnfskja5zk8zb6j"; depends=[Biobase limma multtest samr siggenes]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.2.0"; sha256="1nww8hvbw9s7j1isjkprm3rqxwi8hkhjvsjhjw25yapl72nhk398"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.2.1"; sha256="1rqw74rj3x9f4sslsamsz7g1k835qp76qhxz7i7sxvgi3gv21m9g"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.50.0"; sha256="1pzqdrny4hx6sxnc9glhb5plgrahfdckmcr7symykcc8d896payl"; depends=[gmodels gtools mvtnorm]; }; GeneticsPed = derive2 { name="GeneticsPed"; version="1.44.0"; sha256="00v32167gl0kkglrzl3xm5bw7p8mfc933k074mf9lpbbf9s1liy7"; depends=[gdata genetics MASS]; }; GenoGAM = derive2 { name="GenoGAM"; version="2.0.2"; sha256="1vnvsw3jsp9psdd3vlzxvxhsny15j15b3fhyb07fsr26hgd0k5jh"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.42.0"; sha256="0n3nbhgwnd09fnn7pyaa8n46hhjrz1gkvzbjjf7p9clv6p937y18"; depends=[biomaRt]; }; GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.18.1"; sha256="049pyzr8iszv3g7wdqf3pz7vg7bzd450c20ln6fgw4g5xnkkr10s"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.18.0"; sha256="0a3zhwripfw2508fvgx3wzqa8nq8vnslg97a911znpwvxh53jl24"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.18.1"; sha256="1maslav2r34wjyzh2nlwa862in1ir7i5xk57nw2nlfh5gqy112jd"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.6.0"; sha256="00xlskvrcjmj28mqkdi2d4ksqsb603g6wckqvzqyjr417xyyanrl"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.34.1"; sha256="0slq6hv5bmc3bgrl824jzmr6db3fvaj6b7ihwmdn76pgqqbq2fq6"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.34.3"; sha256="1d9i8fq856hb7bvkldgim4ipzp6v6ax2ki0wgjgxzs1h2q3zpa2v"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; GenomicFiles = derive2 { name="GenomicFiles"; version="1.18.0"; sha256="0qf2yj4lfnnk64fk125n8sqms01shfqiik04nasx2z3k129ykpxp"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.16.0"; sha256="0zy5isp2lqpjm0n0n1gly5bs4izn22yciibyqrnlrr60rmn5s67q"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; GenomicRanges = derive2 { name="GenomicRanges"; version="1.34.0"; sha256="0bgh14d15dpf2iy36qinw45r6n45rqkf0ghazrdl3jfva6vbrb29"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; GenomicScores = derive2 { name="GenomicScores"; version="1.6.0"; sha256="0lrhkcblvnki6kncwpavs01gbcz22yza6ma8zvfmbrrkfaxqzh8n"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; }; GenomicTuples = derive2 { name="GenomicTuples"; version="1.16.0"; sha256="1d5bdsrs521rxnwiy2xg09d95p45n68dsqq17m4xw3xnfyfzpn3s"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; Genominator = derive2 { name="Genominator"; version="1.36.0"; sha256="0lv8ar4z086k8hfjl187klv4yqsb2dawp0xvly6bz6pj3prrih50"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; - Glimma = derive2 { name="Glimma"; version="1.10.0"; sha256="0cbsi6g8k1whkh21jxfn22sj7wry2g3rshiracf5nyvrl2fnl947"; depends=[edgeR jsonlite S4Vectors]; }; + Glimma = derive2 { name="Glimma"; version="1.10.1"; sha256="1ihrww55sa7ipi1rpp0rmn081sbqdwdmm5mz30zfrjr1xxqcdbcv"; depends=[edgeR jsonlite S4Vectors]; }; GlobalAncova = derive2 { name="GlobalAncova"; version="4.0.0"; sha256="1fzd5122z8d68f4brsp2cv8bqcz9yjh5p41pgn6phqkkzjwj9ivg"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.4.0"; sha256="0xcj10r85hxh5qy43cjb6ypd849b5wphhhv528simxq4glhgrhxp"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; GraphAT = derive2 { name="GraphAT"; version="1.54.0"; sha256="1xfd0i0j1fai58c15mc3lrg2jc4iwswyfpyg0ff5hnyhmgr3wnsa"; depends=[graph MCMCpack]; }; GraphAlignment = derive2 { name="GraphAlignment"; version="1.46.0"; sha256="1qql33ikps9x0dkvc31sxvyf8w119ax7519v5bv35s3i5yxh16i6"; depends=[]; }; GraphPAC = derive2 { name="GraphPAC"; version="1.24.0"; sha256="0dwh3xshp74isq3rljlivks04mw4r0vgzg74qwyc2ar5b2j96bbg"; depends=[igraph iPAC RMallow TSP]; }; GreyListChIP = derive2 { name="GreyListChIP"; version="1.14.0"; sha256="1hsjv4r88ldb7pgl5a3im8vdhmbiaj0rrn0clij7jfh5p5r81r1r"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="1.20.0"; sha256="1yxjgm2znqzaxjn3apk4m0nzwzjc7xhv98pxma8sissmcsy63id1"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; + Guitar = derive2 { name="Guitar"; version="1.20.1"; sha256="1d4j54jdnsi8gi6p0kk6zxkk6kzd1r1k77mw142xlvh8b6zrl3nq"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; Gviz = derive2 { name="Gviz"; version="1.26.4"; sha256="0jvcivgw0ahv2rjadxmrww76xambhf7silczmh38nn4yn4qw6w9y"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; HDF5Array = derive2 { name="HDF5Array"; version="1.10.1"; sha256="1qwdsygcadl58qj598hfyvs8hp0hqcl9ghnhknahrlhmb7k2bd2d"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; }; HDTD = derive2 { name="HDTD"; version="1.16.0"; sha256="1girysaq3w4vfmrdb4vx2g0z9f4nb7ly44b72yhvw9fxsdjzbsc5"; depends=[Rcpp RcppArmadillo]; }; @@ -384,8 +384,8 @@ in with self; { HIREewas = derive2 { name="HIREewas"; version="1.0.2"; sha256="1l0q9x8c4fapa3qkcb3ny3bfvlwwmyl1mvv1hmxqw514ch5ylaiy"; depends=[gplots quadprog]; }; HMMcopy = derive2 { name="HMMcopy"; version="1.24.0"; sha256="0kn9cqslx6hf70r2gr8x7dwcmvgnf9c3hxrwmvr4vbkl4d3xg8ic"; depends=[geneplotter IRanges]; }; HPAanalyze = derive2 { name="HPAanalyze"; version="1.0.0"; sha256="1z17384m893wyf7a9v31ghcmsfvly8llbzh98kjz91a6mlqj2aqf"; depends=[cowplot dplyr ggplot2 hpar magrittr readr reshape2 tibble tidyr XLConnect xml2]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.22.0"; sha256="1j36cdpmagk65wx2rzr6m2gih3j6y12w34qsz870iv42lv3l62ld"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; - HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.34.0"; sha256="1aiv4692avzgl8431bq547jaxxd3klzrfmi0fg8nwj0x1k5syxh8"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.22.1"; sha256="18fb3xl39n4n6n98bw2lbfrncg1m226yyx6v8cmrcgz88k0wqjrc"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; + HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.34.1"; sha256="1c9qajkfnhpn5a2lywn8bh467pwzzqx7gc4f2pns0jr911fq6fyb"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.12.0"; sha256="1rj81n21y6n4zlh0ck2i5zxani6hryb7xzf8azl03qk6q9yy09c5"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; HTqPCR = derive2 { name="HTqPCR"; version="1.36.0"; sha256="15raybys2fks10a5w1084yy5sx7r4n61rran7xk7yp0cifg9k8ji"; depends=[affy Biobase gplots limma RColorBrewer]; }; Harman = derive2 { name="Harman"; version="1.10.0"; sha256="0j116k1gkxxbg210y4knc0wdbqjmb2ql72pzsh9r07zcaw2y8fzj"; depends=[Rcpp]; }; @@ -399,29 +399,29 @@ in with self; { HilbertVis = derive2 { name="HilbertVis"; version="1.40.0"; sha256="1b6cfzycskklhxp4fw8hyxgnxdrzx047n2igrqdhbh8pv59cdsfa"; depends=[lattice]; }; HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.40.0"; sha256="1qjfbgzzhj54fvgbvzlk37n1p32bc2vbf2yqkbn5y5ml6hsnmccw"; depends=[HilbertVis]; }; HybridMTest = derive2 { name="HybridMTest"; version="1.26.0"; sha256="1xjykw1j81bai77nhxhxyib5z118isfr755q700934zh8zmsra61"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.10.0"; sha256="0d88l7yr8gvpjflwvyyl4k87g0cd1ylm5knw3aazfb5pkfh7j0rx"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - IMAS = derive2 { name="IMAS"; version="1.6.0"; sha256="1q90x47w3516qkdr3kkfij1gcf8bmnai3xjj90az6xl9m80d5yvx"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IHW = derive2 { name="IHW"; version="1.10.1"; sha256="10wqasl8k2j3y5qvak3xr2xj6symk656xww1y5n2l22nz832j19n"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMAS = derive2 { name="IMAS"; version="1.6.1"; sha256="0dy56awxbjkqx3xlafdz9p8prh5qk5ivgh1cp1gp69aph99xyrkf"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; IMMAN = derive2 { name="IMMAN"; version="1.2.0"; sha256="1z8bxi7szjqzp630yg1hh1jkswy4iqnly325f11bhkaj8d04df21"; depends=[BiocFileCache Biostrings igraph seqinr STRINGdb]; }; IMPCdata = derive2 { name="IMPCdata"; version="1.18.0"; sha256="0qqdpi4g29kf3y2cj7y3db40myacl368alc72lrv1qbw3qncjyjd"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="1.0.0"; sha256="16yg0abp58kzip3j1vpx6rylsp14q9ypp03axyk3b9nbrl96ra3j"; depends=[devtools glasso]; }; + INDEED = derive2 { name="INDEED"; version="1.0.1"; sha256="0w5h7zjalvz595fgz5ds5y4vxmny00psg60rwhjdjsh3z5rh6hwm"; depends=[devtools glasso]; }; INPower = derive2 { name="INPower"; version="1.18.0"; sha256="074fylal7rn880vidi10d78s4zcxakq8f4gcxlgpq2hg0ivhd8rk"; depends=[mvtnorm]; }; INSPEcT = derive2 { name="INSPEcT"; version="1.12.1"; sha256="07q5msw9rnamx957mbiawnv3p9kr5ahwawzvv9xzla7d3lkk62xp"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges plgem preprocessCore pROC rootSolve Rsamtools S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; IONiseR = derive2 { name="IONiseR"; version="2.6.0"; sha256="01lqisdlsvym8nhgpzn7lpcddk9lv9253dy9v65r2dicb5xqhj00"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.8.0"; sha256="0r8ybi8jd0bz4a94knf94sa4ncbqbhsbwmg5shj19kn42xmjba9d"; depends=[BiocParallel CAMERA rsm xcms]; }; + IPO = derive2 { name="IPO"; version="1.8.1"; sha256="0az0wvbnanaaviv4z91q4qa2zh7rjbmgybh4s78z9426cfk2yz7g"; depends=[BiocParallel CAMERA rsm xcms]; }; IPPD = derive2 { name="IPPD"; version="1.30.0"; sha256="19g39k2cxfrbfh8hzmwk6hh67mp3na8447kd7jrdshd6zd2raaas"; depends=[bitops digest MASS Matrix XML]; }; IRanges = derive2 { name="IRanges"; version="2.16.0"; sha256="0ljppsk611xi72gc8mbdx1311b63b1ijd401jz5xmxk5frla1nc1"; depends=[BiocGenerics S4Vectors]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.10.0"; sha256="05c3dsvargd3qk51zmbflvc2qrh07raxdbyzph1nwj21vpc8a1qs"; depends=[]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.10.1"; sha256="1iv32al2z01dgaqfiawx03ga1b380qkhxwi82r9aav3ry42brpmg"; depends=[]; }; ITALICS = derive2 { name="ITALICS"; version="2.42.0"; sha256="1k55pd3zz9zzwc04m1cjlv1ib3w78n8qzxdhzhpw0pwaw6bzfpmr"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.2.0"; sha256="1x77qs6v7n8jn8i10vjpn9fd72v082xs9bsb6mnxxb8173r1kkjk"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IVAS = derive2 { name="IVAS"; version="2.2.1"; sha256="1spqlmlgrdcw1679g1j15rycwadnhwkwbaqag9wcn5prnn27xx88"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; IWTomics = derive2 { name="IWTomics"; version="1.6.0"; sha256="0xn12qjac2kxpyvpm8ly58q41cqz0v3q6pl6cn7hb0lvxcplp86s"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; Icens = derive2 { name="Icens"; version="1.54.0"; sha256="0l70vj53cnvgp5ls205ign47zhl12xbaxl5hdkjs73gbdvx2aagk"; depends=[survival]; }; IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.26.0"; sha256="0s6s02awa5i86rcp12ijaqb8cga00kpwiap2nj6s2jdg3kh1ady6"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.30.0"; sha256="1knaavzdvm1iz6crhqhxsxhvlrpa9k6n6d82q21w6qag8lkvwc2x"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; IdeoViz = derive2 { name="IdeoViz"; version="1.18.0"; sha256="067bd18pb3xyw58xxl0fxa09kcyh4dhdzxbci6i7b82fa17s9hkb"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; Imetagene = derive2 { name="Imetagene"; version="1.12.0"; sha256="0lh15nqjxwgjlhhzrrjj9bpbbkxnq2nlgx3v4fik6q4d5rqx0zbb"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.10.1"; sha256="16fmlrly3mhcwyhibynqywc8ymk1cjim8inmy37g16acl1rr3l3q"; depends=[Biobase curl data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.10.2"; sha256="0j0dnvd876xw8pxp43yphzwqyy6avnkf6azf8ihdhdsr7p7dqkn4"; depends=[Biobase curl data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; }; ImpulseDE = derive2 { name="ImpulseDE"; version="1.8.0"; sha256="0jiqclcm0w6nh7j3w5wqv0c6lw0pyn4wczld2fmkqyv71mshmakn"; depends=[amap boot]; }; - ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.6.0"; sha256="0r6sdhg95c99z3dm5vxxjrispnja1lj5a0sif3v4pf7c3wgz3vvr"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; + ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.6.1"; sha256="0zbrkwaspwaq9aa9il4ahn5lnhbyz8cair5lx354pr1whm3wn8v3"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; InPAS = derive2 { name="InPAS"; version="1.14.1"; sha256="0r1b5f13yq1nqrfk2ry88m5dnz86pjmf9g158c45jzvw0b9czxyd"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; InTAD = derive2 { name="InTAD"; version="1.2.1"; sha256="0r4qln2cgqab7rpahm94v4321nn4md5yh0479s0px8zbnrmq3cnn"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; IntEREst = derive2 { name="IntEREst"; version="1.6.1"; sha256="0vkrzs96jmkj68pxyi9wm5xxn7p5l8zh86j68pw1857dj0sy8wkr"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; @@ -431,7 +431,7 @@ in with self; { IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.0.5"; sha256="0qvcck4ky4mlib49xfmmkhmv4ndxnbfn8bssim8m5c7xl5zqxj7a"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.18.0"; sha256="0k7l3h56m4l7l9d7c1vg06dg6a986n4v7v0w6yrmpspajkx302ar"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.4.0"; sha256="1fbrbshan00r8qidz1yran84hj4higf1g4iw1qx58h13laqs1yi0"; depends=[Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer readr reshape2 rtracklayer stringr tximport VennDiagram]; }; - JunctionSeq = derive2 { name="JunctionSeq"; version="1.12.0"; sha256="167m4qh3hb62y0hslrxlb6lksjb8v1fq2s7118vq9g8whrdc35f5"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; + JunctionSeq = derive2 { name="JunctionSeq"; version="1.12.1"; sha256="1azc7sb3yga6v98x4g97g9pj90yk9kzj6m8s4zfaz3ggsrz62m6w"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; KCsmart = derive2 { name="KCsmart"; version="2.40.0"; sha256="1jhw1w964hvjxcxxzyx03mm5w98a15x4hak9r1bbhi1q38x0vs6p"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; KEGGREST = derive2 { name="KEGGREST"; version="1.22.0"; sha256="0blpd5a7whd2sswfhqd17h58hg06ymaf80gapdr9ja43hnnlj309"; depends=[Biostrings httr png]; }; KEGGgraph = derive2 { name="KEGGgraph"; version="1.42.0"; sha256="0ry0pfqc61r0cz98j6zlyhh4qh6568l0w0j61xmysayyp046mgy3"; depends=[graph XML]; }; @@ -442,80 +442,80 @@ in with self; { LEA = derive2 { name="LEA"; version="2.4.0"; sha256="1bbcsk6k2w8bbjksbnvd7zi4m1zldmjj5pwspjcciqssk10abwn9"; depends=[]; }; LINC = derive2 { name="LINC"; version="1.10.0"; sha256="1lbpqdhiyh52m3jrsqlwshaz0ncflx5gpyp7lknw4z1vgyvi4ad5"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; LMGene = derive2 { name="LMGene"; version="2.38.0"; sha256="0ynyknm86lvcimva5krmy3xwi2ni7js6jrvkkjsy7w3q90cr2q6q"; depends=[affy Biobase multtest survival]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.8.0"; sha256="0i23z7jwnykhawf1w50rdjzvfbarh7pc30x4d94si0i4qdn7vvv6"; depends=[CAMERA xcms]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.8.1"; sha256="0q416vx4frw1dm29yfg06laxkp8ns4mk17p1fw2ir96l44awam7y"; depends=[CAMERA xcms]; }; LOLA = derive2 { name="LOLA"; version="1.12.0"; sha256="1ysdxkaarwwzw06c9d5xh617g284wk57wpj9lbkfv8rrxkla33d0"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; LPE = derive2 { name="LPE"; version="1.56.0"; sha256="0ryvbkjx9x394a9za4wyy6rk9avjpwqsgdz6rywp9rr4di551a4h"; depends=[]; }; LPEadj = derive2 { name="LPEadj"; version="1.42.0"; sha256="11pvvh42idpi7636wrm52whaavl4wnbwki1p82p196m0rvac1jy5"; depends=[LPE]; }; LRBaseDbi = derive2 { name="LRBaseDbi"; version="1.0.0"; sha256="0idf0gn593b6k0fnpkaphh59cpr6a8582namxrvik1b6zpi5kfzl"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.32.0"; sha256="14880gimbgw7lmvdq965nm3jgkss1qfakl8xnf66kx4f8mczrvps"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; LedPred = derive2 { name="LedPred"; version="1.16.0"; sha256="1nimsxm841fnqn0v0x0laq5dcwrp46k9vxaxwd86ayn9sdlgx6fj"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.2.0"; sha256="1j5sxcvapra3ddzsd1mwdd07n03pfpk8qra4y7dxxgzkgx4dh32q"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - Linnorm = derive2 { name="Linnorm"; version="2.6.0"; sha256="1lksh544ds7hq0q47dqk5m3ym12wpjnyhgslnrwabrb972qz43f7"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.2.1"; sha256="1632g54pyip4dvsq6m08qhfl4xgcfphcw5rix7mr9nf8qh1hrbns"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + Linnorm = derive2 { name="Linnorm"; version="2.6.1"; sha256="1qgk8m5kc409flqxs3vnf228v3z0112q8py9hgfgyiwvi6yzdbp6"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.36.0"; sha256="0hz60m9m0098mqwajw83xkraajlbh4q8617d85mfjcbdgmc483a1"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; Logolas = derive2 { name="Logolas"; version="1.6.0"; sha256="0asi528yb65vwdkxxlsdv9g06fr2y5mzxa3m1669byjb6fjzzs1y"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.0.1"; sha256="15p15x840vgnwldzqrlksvlxsl8r0xdn2jkcl9xykhm3frzp5z6v"; depends=[DelayedArray GenomicRanges HDF5Array rhdf5 rtracklayer S4Vectors SingleCellExperiment SummarizedExperiment]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.0.2"; sha256="1yknracvm55fqj4ys2z2am6w8q6vr0g52mlkv5ngabss24gzblkk"; depends=[DelayedArray GenomicRanges HDF5Array rhdf5 rtracklayer S4Vectors SingleCellExperiment SummarizedExperiment]; }; LowMACA = derive2 { name="LowMACA"; version="1.12.0"; sha256="027nrw2qypw3iqs4dwr6gn6bhbq8kx6ba3fjvk7cd9lp3pqw580s"; depends=[BiocParallel Biostrings cgdsr data_table httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; LymphoSeq = derive2 { name="LymphoSeq"; version="1.10.0"; sha256="024d13hrw0s0zmza9bd8nm9s79imwajqvzxiaxj5348pj2d212hr"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.4.0"; sha256="1cbh9q95zx06inz9y7gc85rscv2wrd5d49mdk5107rnkr4hsidpz"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust survival]; }; + M3C = derive2 { name="M3C"; version="1.4.1"; sha256="0l9063bn0sfcq5qxghaj8f98x0pg91fwsd8l64ga8d7pnlm8i5fm"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust survival]; }; M3D = derive2 { name="M3D"; version="1.16.0"; sha256="0a7xs3kqvyxswsa4zcdakij4rvpv1pr4fmplnvxyskhh2zps7xyl"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; - M3Drop = derive2 { name="M3Drop"; version="1.8.0"; sha256="1jblfjk186lxqaczln1b8xj7pbiajwpnklh9czk0fdr4w5x77nqy"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; + M3Drop = derive2 { name="M3Drop"; version="1.8.1"; sha256="0bzxv4lnmbz4d7y1c2w7i013rfjscnj1ndb05k9n1i4c9gsknqya"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; MACPET = derive2 { name="MACPET"; version="1.2.0"; sha256="0799d3pr5b6g7xbi75pf693768nspdc73qay72naghyql6g91s96"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr rbamtools Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; MADSEQ = derive2 { name="MADSEQ"; version="1.8.0"; sha256="1b7d6niz8lhvd17xjl4hy1yyki049cg6wd3g8wp38bm3zs6dzfd1"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.2.2"; sha256="0jl5k0c0146b5mv34wrn0ld9icgdppvhyqnbx0rk18vgyf81bzjn"; depends=[biomaRt bladderbatch clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci gridExtra pathview pheatmap png sva]; }; - MAIT = derive2 { name="MAIT"; version="1.16.0"; sha256="05m31mhzs0lfw8644gsnby55gyk5ljjkfwnav2mbw76wxsb3sk5g"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MAIT = derive2 { name="MAIT"; version="1.16.1"; sha256="0fg3cah81c4gzm3hw590h4grrja2qgfs8mrpkbifrgsclbybnp95"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; MANOR = derive2 { name="MANOR"; version="1.54.0"; sha256="102s71adp93n47sz2hcqs5ihykwcvha6sz7v24p409a7rj8ary38"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.8.1"; sha256="0vbx4400g1szr3lzbrj540fzcvqkld754j9mbwvdpwyagakjcdvy"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MAST = derive2 { name="MAST"; version="1.8.2"; sha256="0rhx655dza0m6yg9jcfz2nmxqahvxx2l91kqgyp7qai0bzz9d9ix"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; MBASED = derive2 { name="MBASED"; version="1.16.0"; sha256="0046yjpjdczxjqkpvsdsj8fnah1kmz4m038k49laqlrricyl6f2f"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; MBAmethyl = derive2 { name="MBAmethyl"; version="1.16.0"; sha256="05jwqlvmjhcfqjqxv6m5mmc72q8lfv2qqwm0f8j1dddpvvyh8fzd"; depends=[]; }; MBCB = derive2 { name="MBCB"; version="1.36.0"; sha256="0yizhggn77arg1pnl3qd25xc5awwv1f1hi3mk6p2c5pdk48mz679"; depends=[preprocessCore tcltk2]; }; MBttest = derive2 { name="MBttest"; version="1.10.0"; sha256="05cwwqj8qjj66ndy2hdx2jxna07xjqg7qv4z1gar6r91p482zsp0"; depends=[gplots gtools]; }; MCRestimate = derive2 { name="MCRestimate"; version="2.38.0"; sha256="1hl5bqibajwscir94dla23544sg866hqx1h793fj7m38xcjhxlzn"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.6.0"; sha256="1rd31c0hxkvhkhyzx0m9scmxhlmibifgymgzhhmlmrg7wj1c11i5"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.6.1"; sha256="1zjhviz3n0w72kwd0czkxddm23jj8876174lbjc85fd8piqf7x6f"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; MDTS = derive2 { name="MDTS"; version="1.2.0"; sha256="1h0vpbi62j0g1cdp06xkp0y4aymnqqhp7frhwi6f7hsiviaz2c0p"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; MEAL = derive2 { name="MEAL"; version="1.12.0"; sha256="05cfyq3fffxj802cyh3bghfn2gg6z0yhy2spii9n8pxmsfcsr7pn"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; MEDIPS = derive2 { name="MEDIPS"; version="1.34.0"; sha256="1bb8k0jzxfji79qxb4v6pdp9jyf6hv83g5mmqj74k3x2cglycwia"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; MEDME = derive2 { name="MEDME"; version="1.42.0"; sha256="0yg04lghqc3sfyakf8id3dc5gd0bfhaf9lp903g5jpiai5779byy"; depends=[Biostrings drc MASS]; }; MEIGOR = derive2 { name="MEIGOR"; version="1.16.0"; sha256="1jxl2bcsbrlab6ss66388l64k5xcjr5g3gpgya2rk4yq237mghl6"; depends=[CNORode deSolve Rsolnp snowfall]; }; MGFM = derive2 { name="MGFM"; version="1.16.0"; sha256="08ngcr1a979amjdl8x5a7mn1zdvrpa4h35rkhimi9kr0fn68kj34"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.8.0"; sha256="0whjr6b2dj6wmagd706q7hxp3nsr3mxsw5p7shv6kdf352pc7xv3"; depends=[annotate biomaRt]; }; + MGFR = derive2 { name="MGFR"; version="1.8.1"; sha256="1v85b82algx79kbk25inan96kymnpchplbl5r15vyxavvkqzd66a"; depends=[annotate biomaRt]; }; MIGSA = derive2 { name="MIGSA"; version="1.6.0"; sha256="19gfb98qmb8wbi343lw92sf7d29xliyzb3wz095pd2npsjr69qkl"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.20.0"; sha256="0ai8z8m4hvx4widz4kwk2hp4vbwxyw7z4hgz6yy1fzyqa1zh869a"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; - MIRA = derive2 { name="MIRA"; version="1.4.0"; sha256="1jilw2brpipppl8rwyad5gbmkjj37y8416igpnqnhk2ig5h7h107"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.20.1"; sha256="0vj7z95pjq62glg1akipydbybxsxc69yjpqrffpc33kqhf46nhfb"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; + MIRA = derive2 { name="MIRA"; version="1.4.1"; sha256="0wy4iisp6c0kfns34pr5am055b1x7wdnbdh8lgr5ll91wxz48sg9"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; MLInterfaces = derive2 { name="MLInterfaces"; version="1.62.0"; sha256="12bgplyzfh0hkwmdp5w4cs5zw3ygdhzmiqzm8vhjyni6m9nrxwy8"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; }; MLP = derive2 { name="MLP"; version="1.30.0"; sha256="03h7k5v620x2hw6k3gddaba40fwh6zvpmlnhf6mcml7ldsni95y9"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; - MLSeq = derive2 { name="MLSeq"; version="2.0.0"; sha256="0v6mv7j46g0ilqxq3bw72zw8mznazqpw3y3bzs2v6577gim7idj1"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; + MLSeq = derive2 { name="MLSeq"; version="2.0.1"; sha256="1jaw2blnl7jsd2px069af7zqk69d04bma8m5vpqb941vx6yhk095"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; MMDiff2 = derive2 { name="MMDiff2"; version="1.10.0"; sha256="0ljdr6y3plzpf9j70ghw41x3jpb8p52lqb9987gm1mw7lxw9iraf"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; MODA = derive2 { name="MODA"; version="1.8.0"; sha256="0jarqlyfx81pamdl5z1kx96ri6kjq59lv144ifw8ga6kzs5bng58"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; MPFE = derive2 { name="MPFE"; version="1.18.0"; sha256="02lnymmsl1k770jh41sak6dxkzsb0c38934aslbd890dibc2c04i"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.0.0"; sha256="0irwgb1466gca77s2cfv1m915r0m7li9h0xqc47na5wjnm89xx40"; depends=[BiocParallel progress SummarizedExperiment]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.16.0"; sha256="1s875q1r5sraxm0lnvcv6vznkna3r0pp0ssnxpw2hwbfdrhs7zp1"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.16.0"; sha256="0q1bpb6f73syngq6y1y53vqkpr4ma3nlv5scvl3ps6s70qim7183"; depends=[mzID ProtGenerics]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.0.1"; sha256="0nwd28jcr8dkhi3v71l9dd83dfl4k51sjdnjmml9vbdcznps1ffg"; depends=[BiocParallel progress SummarizedExperiment]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.16.1"; sha256="0qy7k9l88qna24kmrc2ikg326dk1jwcrl3908p74lh42sr5wxlzj"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.16.1"; sha256="0qbyb4wycf6qbkx83rh1n8hc664mw542x6jw658aqhdnfl3gsvxq"; depends=[mzID ProtGenerics]; }; MSnID = derive2 { name="MSnID"; version="1.16.1"; sha256="077n6ljcnnl7q4w0qj8v46vm4sjk9vzzfqf7wsc6lz0wmyzqdng3"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; - MSnbase = derive2 { name="MSnbase"; version="2.8.2"; sha256="1c90xxr743mackcghimnc0912zzy33p13m6azmz6d6daiahqrzkz"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="3.14.0"; sha256="0fp5xp9mk8lg8s737fivgbvj51sxzzh1f6rdkcj9hifjc7r18s2y"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.0.0"; sha256="12s1d4dv7dg95fm80mkaa7nd28j7yi9kxngbwbmzfgkrypjii4ap"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.2.0"; sha256="1dwhr39gpkknk8920zpb2fvjkskkljkj9d4ah0yi7gwl45vv2gll"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="1.0.0"; sha256="0mpkzj3vzw3hcwf4fm07ywqdchwbmggs4xzrvalgwk5nbmvis9ai"; depends=[data_table dplyr ggplot2 limma lme4 matrixStats MSstats nlme reshape2 tidyr]; }; + MSnbase = derive2 { name="MSnbase"; version="2.8.3"; sha256="1kl1d7byphnfpmbl5fzbgs68dxskhpsdyx7ka51bpfn0nv3pp492"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="3.14.1"; sha256="1bgvdq1mfq6rxjf5ag2slrhy4056906wghsirrymf53nw3qz5g6s"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.0.1"; sha256="1f6gv1fqm5h6xs91wc1bamyri47qggb872qzriwzvff7ydn0q1ag"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.2.1"; sha256="1k7dhiayf885ax1mg03yg1w4mamk3j1gsm7phszxl3i0j3c2gks7"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="1.0.1"; sha256="0xpxshnqc1ljfhk081185mbchdxr6n5xrlv2zhrzbxi48i3sm5rv"; depends=[data_table dplyr ggplot2 limma lme4 matrixStats MSstats nlme reshape2 tidyr]; }; MTseeker = derive2 { name="MTseeker"; version="1.0.6"; sha256="0fsb7k6pkl15q8csygpsjrz4jvy20mfd5rfmhl7q7ffj4d7sprxh"; depends=[Biobase BiocGenerics Biostrings circlize GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR Homo_sapiens IRanges jsonlite Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VariantTools viridis xml2]; }; MVCClass = derive2 { name="MVCClass"; version="1.56.0"; sha256="1hw36gd1z19dir6fl7j3dzqzi5p1668zbwpcz7l21hbyycv27l0j"; depends=[]; }; MWASTools = derive2 { name="MWASTools"; version="1.6.0"; sha256="0bkl7vgyac6xhjj636vlmynq75zyp6smvjvzg1ymkgg800wylg4c"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; MantelCorr = derive2 { name="MantelCorr"; version="1.52.0"; sha256="1z0f6g5zbxl1sqcl6rdx7y6vh637i6209ya9fsan6wi5r8rcsamn"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.34.0"; sha256="0xi1d4bhn2iy3dignw2ar6c42axrcaab207ww7zbg2yv8ndhzn9m"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.48.0"; sha256="08l4113qh9rc0zi1b2745dgwbalcg030bx7vx0kqpjmq5lm6vw8c"; depends=[waveslim]; }; + MassArray = derive2 { name="MassArray"; version="1.34.1"; sha256="0hdydbpg7arsxl0v7zz7w6zrczb44ff2dap4vgwqxdk5jgh1mm4b"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.48.1"; sha256="1xcr568a36b570rldy27wq4a2jn7yf5f6fddlzgx6x944jdn3ckz"; depends=[waveslim]; }; MatrixRider = derive2 { name="MatrixRider"; version="1.14.0"; sha256="17n3s0gdj3jjlf4pangnbdb00ak62j5wvdqd8yhackhs4z9zbchb"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.6.0"; sha256="0i3kk071m6n3p93kkbnyriigyb3xilw1nm6ascilj746iapqnjpf"; depends=[EBImage]; }; + MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.6.1"; sha256="103aqb89g5ca9vp0j3763dypwjqnzvf1dh8s6v03nrisfslwa85s"; depends=[EBImage]; }; MeSHDbi = derive2 { name="MeSHDbi"; version="1.18.0"; sha256="1if3jrrxlrsrza7404d7banrdfbz5g1v69wydxglldzfim3g9jw3"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.54.0"; sha256="0s39wlfcqag15y73dapmnz0zrywsnd9flz1n7yl20r9p8dfmhv12"; depends=[]; }; MergeMaid = derive2 { name="MergeMaid"; version="2.54.0"; sha256="07cgcfvppdvyrb0hhi24126ysdcal8vjyplqxfkqxxyjpv0p8ap8"; depends=[Biobase MASS survival]; }; Mergeomics = derive2 { name="Mergeomics"; version="1.10.0"; sha256="16xv75q790r0apdb1yb10j6mcjs67a891av1kjf21xyp5g5bgpja"; depends=[]; }; - MetCirc = derive2 { name="MetCirc"; version="1.12.0"; sha256="0jbxfg57xc1sggglcl5daddc7iy7jn3mjvqyfzbppivkl5mgfqyp"; depends=[amap circlize scales shiny]; }; + MetCirc = derive2 { name="MetCirc"; version="1.12.1"; sha256="07y7r4y01v26mxgfivxrhq9r80w228lxicsbxvsbb2xbb8vvjz7j"; depends=[amap circlize scales shiny]; }; MetID = derive2 { name="MetID"; version="1.0.0"; sha256="12nrbdq4xracd6p7xz3l0dvqp4xlj34jr7wj90wmk09i89h7sfjj"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.0.0"; sha256="0xsifgrxhvxiy04qm2agr3i14zl8r2d3knmjs4b5m2panl6zancj"; depends=[BiocParallel bnlearn mpmi parmigene ppcor rfPermute sna stabs WGCNA]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.4.0"; sha256="1d6pshk81dg3jjz5hkm3qgzs4jzfag2lrhr65ff7skj38wlslzcz"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.2.0"; sha256="1wa5i8b8pa2hj9sx1cf01vqvc3pklbjkq7h6pr0i2m3czcc72d09"; depends=[beanplot gplots RColorBrewer SummarizedExperiment]; }; - Metab = derive2 { name="Metab"; version="1.16.0"; sha256="0a6sxn4833nm1jrdybcsl50vw9gkmx746x4552i1fd0m7i6srrlm"; depends=[pander svDialogs xcms]; }; + MetNet = derive2 { name="MetNet"; version="1.0.1"; sha256="0s45l7y43bhc1sha4wmhch9vfyw7xza95lyyl5ixfz28z99k08vr"; depends=[BiocParallel bnlearn mpmi parmigene ppcor rfPermute sna stabs WGCNA]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.4.1"; sha256="1yi04zy7kmikac22msynnnm3wqhy9d59qz2v8m54w8h3rn49c1c0"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.2.1"; sha256="007y4dz3mfww6vwmm5d99flgzw372hjkbbv36n8hz1gqrwy52yvp"; depends=[beanplot gplots RColorBrewer SummarizedExperiment]; }; + Metab = derive2 { name="Metab"; version="1.16.1"; sha256="0m7wd4rw0q7y53gpzi0bgn0gwf83kbdx1pjvfblnirkgwyq69f6c"; depends=[pander svDialogs xcms]; }; MetaboSignal = derive2 { name="MetaboSignal"; version="1.12.0"; sha256="1wgpcn25cpql6dwgwpxw16w8hizny92xfbgs4rjz4dpssg9n1qq3"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.10.0"; sha256="17snj89b00pafns713qqp9ljspjciip7zfskl29bzmvi5b2rgch7"; depends=[Biobase randomForest]; }; + MethPed = derive2 { name="MethPed"; version="1.10.1"; sha256="1vcy4x7p2bhpyfpj5lxwjzfm09lc3c0rkzam83837b7apz3j9sqn"; depends=[Biobase randomForest]; }; MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.14.0"; sha256="0by77378lml6ncz53c7xkh29dayach31p3fn0jrf31x947larnzy"; depends=[Biostrings gplots seqinr stringr]; }; MethylAid = derive2 { name="MethylAid"; version="1.16.0"; sha256="03qf2j12nq6nqfs96lsdk7jny2ak6258j5bq0brp7wmpijlnjrak"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; MethylMix = derive2 { name="MethylMix"; version="2.12.0"; sha256="062jr6qskp3psmpirqn5aiq5mhw3k1ipyb0m16ds2i95n8v3ky5p"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; @@ -523,7 +523,7 @@ in with self; { Mfuzz = derive2 { name="Mfuzz"; version="2.42.0"; sha256="105xk52hxc2d5yy0fy4cb0zhrpnansvyb0dzx9jc1dfjvxzq4vjg"; depends=[Biobase e1071 tkWidgets]; }; MiChip = derive2 { name="MiChip"; version="1.36.0"; sha256="10v9vvyr4bs7l0x6cb6frhni8sa16sdllykjsbnjxd3jynvzrpy9"; depends=[Biobase]; }; MiPP = derive2 { name="MiPP"; version="1.54.0"; sha256="08g19yw9hbrwsm630rz907dqlfs7qg2xvaby9bx3mjiwlr7d15wx"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.24.0"; sha256="00qhq68nai3kl6ysrq8m8b008b0zmmr9d3sg7j88g55fqx2c810q"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.24.1"; sha256="1jak07j4kfnyjhcdik4a4ihbb87sqx7mh3yajjbrm13zpvh9vyf3"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; MineICA = derive2 { name="MineICA"; version="1.22.0"; sha256="1n10x9y5x1h06k1kv2jv3ym5n950dhcd20g34rarx0zyihd2ln4j"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; MinimumDistance = derive2 { name="MinimumDistance"; version="1.26.0"; sha256="0rv7pgzbrscc8raa49x1nbvbp3ivr8kwdr8rf6hvfw8y1xk3rnba"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; Mirsynergy = derive2 { name="Mirsynergy"; version="1.18.0"; sha256="19nw7yapcxvidzzdbhjzplajfmss65drqq5xrsz1ycr87jgh8h5b"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; @@ -540,8 +540,8 @@ in with self; { NADfinder = derive2 { name="NADfinder"; version="1.6.0"; sha256="01jr6pds2r5h7fmm9z0rajiavx7fh4zxf623s1rdjg9ir6njq5m5"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap rbamtools Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; NBSplice = derive2 { name="NBSplice"; version="1.0.1"; sha256="155cyb7h7sn7q6m63cv33wbackdq7ryvnnidcy86321yrfjyx023"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; NCIgraph = derive2 { name="NCIgraph"; version="1.30.0"; sha256="16mxxrq6g4szig29cah2a13qp1ybsh8ci37izlq6gpxn0h00maym"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NGScopy = derive2 { name="NGScopy"; version="1.16.0"; sha256="1d5r841g5h4siazhkah2xz1all77kgi2q1a0hhhqsnwrnq7f774v"; depends=[changepoint rbamtools Xmisc]; }; - NOISeq = derive2 { name="NOISeq"; version="2.26.0"; sha256="0xf13vxwdlgi6ybg038lq1mw8zypj0aajvc4vn0rc7587m7l1vnd"; depends=[Biobase Matrix]; }; + NGScopy = derive2 { name="NGScopy"; version="1.16.1"; sha256="1zfasfbzzay402igag1ynffz2v9ad70wdy5vs02q0api3rkkn406"; depends=[changepoint rbamtools Xmisc]; }; + NOISeq = derive2 { name="NOISeq"; version="2.26.1"; sha256="1wyhhi9ydlbjlz427093mdp5ppby77n37w5c2iyxlpsdk2m2nqsn"; depends=[Biobase Matrix]; }; NTW = derive2 { name="NTW"; version="1.32.0"; sha256="10ndg6mina5wz3w87wpv4mnbxdyj6rhvc9jqf954wmh6gj04vyin"; depends=[mvtnorm]; }; NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.12.0"; sha256="1927ry931ckjrci6yfk3fh774bizh4yb5f7p7x1ra1yxzfizq7k3"; depends=[Biobase matrixStats Rcpp]; }; NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.14.0"; sha256="1kisr7j27iwyxjxsylnlrqz9ac5kbwr4indg0qkc3ycdlqqxbqvl"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; @@ -556,13 +556,13 @@ in with self; { OGSA = derive2 { name="OGSA"; version="1.12.0"; sha256="0qcnc6658ggv4is9a0s9lid41ns9845qbwd5m0l8r9qjzgmix2s7"; depends=[Biobase gplots limma]; }; OLIN = derive2 { name="OLIN"; version="1.60.0"; sha256="0vmmxx74i3ch00xsaw60b82h7nbh8rgv6xzbzmcnpa79anaamv3l"; depends=[limma locfit marray]; }; OLINgui = derive2 { name="OLINgui"; version="1.56.0"; sha256="03n5xlh6fhcw7mvsdaihxn0b39zyhf3f2fayql40nkcinfmbmr50"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.0.0"; sha256="1n7rl4xnm58dbp34fhhm7ijhzj190j1xghdgjjnc6pgaqnzv9yl4"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.4.0"; sha256="1b6p6fxq0m7j85wmrmb2p3af8shh3wbd0m0522dwcw7jn7mj1lai"; depends=[MASS qvalue tibble]; }; - ORFik = derive2 { name="ORFik"; version="1.2.0"; sha256="15kbz7kgklf9ysajlvxxckm2s09h34hvdlms8k94g5a1dmjij1xa"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.0.1"; sha256="17sm8vk96z25q1mdybq6al82yrbb28sjrr40lpwc1syzjabhns2b"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.4.1"; sha256="00xwam4vpa7jpdqz8jy66kckl92sawd2m60qwlp96l8dpm5f7kxv"; depends=[MASS qvalue tibble]; }; + ORFik = derive2 { name="ORFik"; version="1.2.1"; sha256="0x8pj6j3g8gq3i6fqgnd85s60kadq4shjr4hykf00f9zzkj3gnv9"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; }; OSAT = derive2 { name="OSAT"; version="1.30.0"; sha256="12cswkscavbkx8cxj0kzk6gz1h8xwp24mwy53dgyr771sch76k7j"; depends=[]; }; OTUbase = derive2 { name="OTUbase"; version="1.32.0"; sha256="0xhwa9yd0qd86j03190riff5z64h93pn7q0b6qb2awwf5zrda8fs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.0.1"; sha256="065j21agl5ckqhr5gmi2ymy7mms15gb4dydcl08nfhy8anj5vxb1"; depends=[BBmisc Biobase BiocGenerics BiocParallel data_table DESeq2 GenomicFeatures GenomicRanges ggplot2 ggpubr gplots IRanges matrixStats pcaMethods plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reticulate S4Vectors scales SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="1.2.0"; sha256="01ibhq35gd8z2qvmrlfkl82x9gpx7rhm84i5qhm07jh9a637yf1f"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.0.2"; sha256="12y1iwrv9v1kzfj5zqjzkb6h819xn6snbkbxg0j882qsw1mwdhwp"; depends=[BBmisc Biobase BiocGenerics BiocParallel data_table DESeq2 GenomicFeatures GenomicRanges ggplot2 ggpubr gplots IRanges matrixStats pcaMethods plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reticulate S4Vectors scales SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="1.2.2"; sha256="16qy6p36mkw4fkyp9yis56zyn88x780767ahnqhnyzqlm9g5kv5w"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; OmicCircos = derive2 { name="OmicCircos"; version="1.20.0"; sha256="1akb3djkq0waq1f81zi3nnv8svqf2i8w9agaac732vbdr4cf821d"; depends=[GenomicRanges]; }; OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.14.0"; sha256="00a8wwk0z73ipdhjlwkwz4nqpjpyylafds88g8dhz0imk8f24gnj"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; Onassis = derive2 { name="Onassis"; version="1.4.5"; sha256="17s3d2wb6mnckpxaq4ppll6fwc6fag4mg9921bf3islkb7vrbxfz"; depends=[AnnotationDbi data_table DT GEOmetadb knitr OnassisJavaLibs RCurl rJava RSQLite]; }; @@ -571,16 +571,16 @@ in with self; { OrderedList = derive2 { name="OrderedList"; version="1.54.0"; sha256="1hvw6lc39gq867gvz426qyj79yz85k2shwlw4mnk6xaib652gqwf"; depends=[Biobase twilight]; }; Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.10.0"; sha256="1s2rqzdmzmbif92466x2mgmbjism68c62590pj8swx853f9x668s"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; }; OrganismDbi = derive2 { name="OrganismDbi"; version="1.24.0"; sha256="11pyv56cy4iy095h40k6k0mpjdlh6gsb4ld3s57nfa9nd4ypx3yi"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.12.0"; sha256="197l7d2rj1s47blwg96f0xcwyc9rw1zr79j5r5l3iyax9c2gvxsz"; depends=[BiocParallel cluster EBSeq testthat]; }; + Oscope = derive2 { name="Oscope"; version="1.12.1"; sha256="0dxdif1zw8vw6p8ci1nlgr6pwh6gf27r6c9q1lng79gi6x2ipv75"; depends=[BiocParallel cluster EBSeq testthat]; }; OutlierD = derive2 { name="OutlierD"; version="1.46.0"; sha256="1xbkasaf47qmfqqrm1k3mgnjj63rv30094r0f968q7rxfpdmq90f"; depends=[Biobase quantreg]; }; - PAA = derive2 { name="PAA"; version="1.16.0"; sha256="03hd7vvkqfr369wp8r0i9y29li9q91s76wzvbh9scvqd0ngmh9cv"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PAA = derive2 { name="PAA"; version="1.16.0"; sha256="03hd7vvkqfr369wp8r0i9y29li9q91s76wzvbh9scvqd0ngmh9cv"; depends=[e1071 gplots gtools limma MASS randomForest Rcpp ROCR sva]; }; PADOG = derive2 { name="PADOG"; version="1.24.0"; sha256="0xia09m11j70n2gfmka620pk66vjvzr1376y2lb0g18k5n6k2zxv"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; - PANR = derive2 { name="PANR"; version="1.28.0"; sha256="0xl1raw6ns1zzmljs0gp3rxg6gvq1qz16c38jwq8nbaqgb85c3qr"; depends=[igraph MASS pvclust RedeR]; }; - PAPi = derive2 { name="PAPi"; version="1.22.0"; sha256="0bpidgraqkxh7jb8nx597ml4xcmmv48gx09nmrc80jlbqx0h5wxn"; depends=[KEGGREST svDialogs]; }; + PANR = derive2 { name="PANR"; version="1.28.1"; sha256="00ymf82kdgc4pqnmz9hgi9b4pk8cidg8n6icx40rcs5dmlkhl24d"; depends=[igraph MASS pvclust RedeR]; }; + PAPi = derive2 { name="PAPi"; version="1.22.1"; sha256="12hv5cf0mc243w7a95hlbgfvll7qs6wcc3vqkpg7k5giy24n8i1q"; depends=[KEGGREST svDialogs]; }; PCAN = derive2 { name="PCAN"; version="1.10.0"; sha256="08im6jwzbnnb4z01ayiv1jk8yqna8ncg6z65bfh0ba4jjvjwywfi"; depends=[BiocParallel]; }; PCpheno = derive2 { name="PCpheno"; version="1.44.0"; sha256="1svdqnfp7ggi29rm5la35p96vmr7nzcfy5a458f1ra0kd4a6nd5l"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; PECA = derive2 { name="PECA"; version="1.18.0"; sha256="10hhwvlr5gzcal0g62zimr79a3v2cpp95cb7nafnlq8v3ndg69hd"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PGA = derive2 { name="PGA"; version="1.12.0"; sha256="1mr4v3d12igbrzi0zka7ynjfg9l68pincmlknh7vgv2hjmgl2jy6"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; + PGA = derive2 { name="PGA"; version="1.12.1"; sha256="0ss057198960hig0kdc9hgn850830cmjx48n3lbq4nk2y887grcf"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; PGSEA = derive2 { name="PGSEA"; version="1.56.0"; sha256="0nmgjfw32flc42qj0vih8r4nsc01qv01cnqrr2nxv30zdwbnfk7w"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; PICS = derive2 { name="PICS"; version="2.26.0"; sha256="10djnd38jdbyk18yqsypkpxqwnfiy8441zpmx1bhzzn8p5q2jpsv"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; PING = derive2 { name="PING"; version="2.26.0"; sha256="16iygwjsk8n40jp4giik0d4ypd8i4dmd8xdl7dhh81jmjpmycd92"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; @@ -589,9 +589,9 @@ in with self; { PPInfer = derive2 { name="PPInfer"; version="1.8.1"; sha256="1ifp7gxvdlvn7wh6aizjfkaj53bcg4hbq2m54ksk2a7n86fympr5"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; PREDA = derive2 { name="PREDA"; version="1.28.0"; sha256="1bm08y242hikgxh8icld6mvnydq2hg4wh6m3km5j3hw3hzv5qmv5"; depends=[annotate Biobase lokern multtest]; }; PROMISE = derive2 { name="PROMISE"; version="1.34.0"; sha256="0g4qkk7yc7b4idhy78xnwplfwg5ng7y9qwhap90hhw7nnxdvvb3i"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.14.0"; sha256="05b7k8471gqi5kh9hhpnqzvnrn65a0x90ajyp5bslzviy84akh5b"; depends=[edgeR]; }; + PROPER = derive2 { name="PROPER"; version="1.14.1"; sha256="1wcvpfvj9c1g4yqj02lia3kchf080y81nvl9rb9mls5h6117dmbi"; depends=[edgeR]; }; PROPS = derive2 { name="PROPS"; version="1.4.0"; sha256="150apwa4c80741kavf2ilz62575pbmjqkwnbgb095ddfqb2wp4ly"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.58.0"; sha256="0c3zahyj47s5rj3jplmzp6kjnij1kd7prly0m479l1ias0za7pnm"; depends=[Icens]; }; + PROcess = derive2 { name="PROcess"; version="1.58.1"; sha256="0b8simjv3g1dn0dsxa11fzif24z9cmlvczzxzm354m6bkfanl1f0"; depends=[Icens]; }; PSEA = derive2 { name="PSEA"; version="1.16.0"; sha256="0zw1jrrdl17fmdn3z18rdr86lb9lmpqrsdf9ilm172cxhjbq7iba"; depends=[Biobase MASS]; }; PSICQUIC = derive2 { name="PSICQUIC"; version="1.20.0"; sha256="0h42hsvh2n0hib9gw4fqpri9lqdnaz6ivzcf406x54zdsgwalyzd"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; PWMEnrich = derive2 { name="PWMEnrich"; version="4.18.0"; sha256="1v8yqczf5784w7a9d21jp3p2dcirrkg6ydccd8k8i0355x8yxxc9"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; @@ -599,25 +599,25 @@ in with self; { Path2PPI = derive2 { name="Path2PPI"; version="1.12.0"; sha256="1yc4hqycjd2zc87wiq9rrswb5f0x33vsd6d23gckn1sqvam2clqj"; depends=[igraph]; }; PathNet = derive2 { name="PathNet"; version="1.22.0"; sha256="1n4g960m0j38snignsahaq7nr6bahln0cbqhgx530vwzsdv2xzx3"; depends=[]; }; PathoStat = derive2 { name="PathoStat"; version="1.8.4"; sha256="15n8lmv9vgwh1ain21gfgyl5bfnkfs7rnjdjbz69bvy1k2nmgl3y"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PathwaySplice = derive2 { name="PathwaySplice"; version="1.6.0"; sha256="1z39l1vq188gd2w92xz3baf5n04jzajqknbhc3z4n4761900vscz"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; - Pbase = derive2 { name="Pbase"; version="0.22.0"; sha256="02h4jhnwf2zgs9in7n70ram7rqkx91f5qmqcpypcrp07hfzmybvl"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel biomaRt Biostrings cleaver ensembldb GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; + PathwaySplice = derive2 { name="PathwaySplice"; version="1.6.1"; sha256="09glsv0hj8yzg79hjjpnfn59w12i7l0n2fpwzg98wiqx7yyza5pk"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; + Pbase = derive2 { name="Pbase"; version="0.22.1"; sha256="0z5g2wbjzzqfw0sjb537j84d4l8bvf8pjav5z39ypzx2inq2zzb5"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel biomaRt Biostrings cleaver ensembldb GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; PepsNMR = derive2 { name="PepsNMR"; version="1.0.1"; sha256="1i8k4x6s7isfzxsv7mpzq3gsh434d3z373ghvwljgdq7q89bg7h7"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; PharmacoGx = derive2 { name="PharmacoGx"; version="1.12.0"; sha256="1ddh6bmrddbdmqdpmyy5mlkqvhrk39c19lzybrirfclq6cydfh5g"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; }; PhenStat = derive2 { name="PhenStat"; version="2.18.0"; sha256="1ilsx9fn0aadw0kly5x4lqs88p8lvwidfi38x3h3gpxpf4gygxzx"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; Pi = derive2 { name="Pi"; version="1.10.0"; sha256="03wzmcz57kdflicjb2wmnxg0fvfmbgizvql5164cf24fsi2lvbgi"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; }; - Pigengene = derive2 { name="Pigengene"; version="1.8.0"; sha256="1xj9rxnfbm9py6vlgqfclj6pbry7j8hvwf3395bc1hcvq5ylqnh6"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; - Polyfit = derive2 { name="Polyfit"; version="1.16.0"; sha256="017phfb69sigv8xz1caqghy5671dbrlflw984mw6gc2329miklyl"; depends=[DESeq]; }; - PowerExplorer = derive2 { name="PowerExplorer"; version="1.2.1"; sha256="0624k76ak0zyq3lyga35bmcq488gig7217zkixdspydm1g49zq0h"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; }; - Prize = derive2 { name="Prize"; version="1.12.0"; sha256="1i7v5c9s1y3nfl9655yg7zilsva3hxl53ykawbr48fla7hw27fmq"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; - Prostar = derive2 { name="Prostar"; version="1.14.7"; sha256="1a3wcx9pkwnwpm3ccn84znyqf9qd4i0z531fyd0yp011a5knmxpq"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets webshot XML]; }; + Pigengene = derive2 { name="Pigengene"; version="1.8.1"; sha256="13pmw7nf8fvn9bnnh7fwqgrlg589796nqv83snanqwqsp4fcklid"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; + Polyfit = derive2 { name="Polyfit"; version="1.16.1"; sha256="0nlclhj5ni09blwf5prpcp2iiflqk17ca3gqjl5shvl9y9v8nbqb"; depends=[DESeq]; }; + PowerExplorer = derive2 { name="PowerExplorer"; version="1.2.2"; sha256="14dzv3p79x95w6185r2srnmw1i8n6x2b1fd2chbx42b3xa65xliy"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; }; + Prize = derive2 { name="Prize"; version="1.12.1"; sha256="046wvhjqyyc79q88lzcx1jfg73f4sr83japiapzgm5gqnri1hs8r"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; + Prostar = derive2 { name="Prostar"; version="1.14.8"; sha256="0i2rz644ji4ys6fb2782kijc9zqf18qzknca3c5qjgbh8p34f7ak"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets webshot XML]; }; ProtGenerics = derive2 { name="ProtGenerics"; version="1.14.0"; sha256="053mmxhzncqgigl2iqjlq56qzimlw2zzw31wpzw19rf7rld1vi3b"; depends=[]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.0.0"; sha256="0bdw2ayay4assa2pkyx83s3jkpi6laldvphgllsmdd5y4mgcpxpa"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.0.1"; sha256="0gyx7pfswxa7p6whyi2d10341vgc9yr3vvi7a2wj1padas9cm0m1"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.12.0"; sha256="049c0g20kbf12hs3r4il3gpr9chi2w2d2l0s7pkgc1sxyb0aydvs"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PureCN = derive2 { name="PureCN"; version="1.12.1"; sha256="1l47iwnv9kqa1vznpdkicx9vcmvh7hb607qczaabjkprqn6131mi"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + PureCN = derive2 { name="PureCN"; version="1.12.2"; sha256="109riqxc46f7x2psy096rhhpjzpk75j5i00x2842c4drps86bzy3"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; Pviz = derive2 { name="Pviz"; version="1.16.0"; sha256="1qgavdwqp2zvixbvpm2mjqcbwcz2gw8kfj6zk9064m7zmh4qg3iz"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; QDNAseq = derive2 { name="QDNAseq"; version="1.18.0"; sha256="04ff9nbckzrlb45mr2j0c3mlh1wcggq5bbl81zklhq203c5x1wc2"; depends=[Biobase BiocParallel CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; QSutils = derive2 { name="QSutils"; version="1.0.0"; sha256="1z06c7f2jgr60j9rbarjx310mhy4n91chb3azvw0050z01rgxi02"; depends=[ape BiocGenerics Biostrings psych]; }; - QUALIFIER = derive2 { name="QUALIFIER"; version="1.26.0"; sha256="1w2pyznx5s04c6xrhd96n8im1gcp45qd42arkjmlvxyg8pf9mi7s"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; + QUALIFIER = derive2 { name="QUALIFIER"; version="1.26.1"; sha256="0656ffwvaiapj4jyksfmqrmwwjs5s9av8lpmy8d31x7iins2kps6"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; QUBIC = derive2 { name="QUBIC"; version="1.10.0"; sha256="08yp8y6rcggrx69326f8gpx3arg9b6hq9fh1f2ngnd409lhlfxdn"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; QuartPAC = derive2 { name="QuartPAC"; version="1.14.0"; sha256="0bm18r4yfz3z8dr8hhb1a9issggbrw3x3galvmar0wdr1is5mcfk"; depends=[data_table GraphPAC iPAC SpacePAC]; }; QuasR = derive2 { name="QuasR"; version="1.22.1"; sha256="15lnrj8m8p1ns7iv5f2j0xshma3gpjp3lwry1s0axsxsk9khzrl0"; depends=[Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; @@ -636,7 +636,7 @@ in with self; { RDRToolbox = derive2 { name="RDRToolbox"; version="1.32.0"; sha256="01dpaniy2chd7kim6q9lqq65pfs3y1z05jrhgjmrmc7hg0yp1zb1"; depends=[MASS rgl]; }; REBET = derive2 { name="REBET"; version="1.0.0"; sha256="1m2czya7af35xqy9cgrdwwwvfqdq2g8s02jbwv5wl6r6lwhcgid2"; depends=[ASSET]; }; REDseq = derive2 { name="REDseq"; version="1.28.0"; sha256="1kp7nl3z1w27vmcqkvwbyi6d7dsd125zih8zbzlh96axankcqsck"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.6.0"; sha256="0ay2ywn3qd4ifbkv878inzlbh4d57rcjli5lfwww4rmimjn751rv"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; + REMP = derive2 { name="REMP"; version="1.6.1"; sha256="1q3011zbglgy2wrsampwslaf5wiz03ly62qf47mhi5pdngnsb6cn"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; RGMQL = derive2 { name="RGMQL"; version="1.2.0"; sha256="0rvlsl9acjkpva4x1wxg7pyscr3pzdr9mw2k7yzy429ad0lpk81s"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; RGSEA = derive2 { name="RGSEA"; version="1.16.0"; sha256="02df90fjqynw4r9jx55na6ky1g814463ipb4ag1f4605hhdnbhmq"; depends=[BiocGenerics]; }; RGalaxy = derive2 { name="RGalaxy"; version="1.26.0"; sha256="1a0bswfqdv2z7kml32c42h7zv5ayam96ka9frndvkba36zlzysrw"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; @@ -647,32 +647,32 @@ in with self; { RImmPort = derive2 { name="RImmPort"; version="1.10.0"; sha256="1gws1zkh5gzw0drw7c21wp2g8wskaagw0f3g1p41z91sffv8vvrm"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.6.0"; sha256="1kzsmglxq7lriz5vblprj7g1kbwzgcxjd2l1w12npb6j7vw8s598"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; RLMM = derive2 { name="RLMM"; version="1.44.0"; sha256="17lmjhb0c5w4pp68z4h5ij93n9f31dy7aic40xd958zwxm5gnwyq"; depends=[MASS]; }; - RMassBank = derive2 { name="RMassBank"; version="2.10.0"; sha256="1aa47p0xdmz9mfdnxz2jdyh70szbndj7wqgvh9zvpkqyh7dz1667"; depends=[Biobase digest httr MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.22.0"; sha256="1z40lfaxivlrw8f77qf010wkzh7d6x0dp1iq0x6203f03gn9x21c"; depends=[]; }; + RMassBank = derive2 { name="RMassBank"; version="2.10.1"; sha256="020ilicbbn9rs5pb5mc3dva862jsx1arxbpq45vxig9bbvk2gq73"; depends=[Biobase digest httr MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.22.1"; sha256="15x78z3a6j462h4cp93qzrvajnq71p81bn9y6qj4kjv94wdx9v02"; depends=[]; }; RNASeqR = derive2 { name="RNASeqR"; version="1.0.3"; sha256="07nj0iz25czfvywgl8pp1isd5vnskwnhw9w1mjjkn71sk8q5vxdc"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.2.0"; sha256="001vdk4b8ya34ik0kxfwn028yhbqsja3lb73h93fw64kfislpci6"; depends=[ggplot2 gplots nloptr TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.30.0"; sha256="0cnigymdsrv492aicb9wvsiszg8v9axkdza6ksyz0k03ynw3v72l"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAither = derive2 { name="RNAither"; version="2.30.0"; sha256="1ingm1q4achk00jnnf8mfzalsvci5h2q9lg7y9nnnzvg6lqghjr8"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.2.1"; sha256="1hpmr9nip3immkhdzq5qfxf00cdghyhhv8a7bvnan4m7l5c0q509"; depends=[ggplot2 gplots nloptr TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.30.1"; sha256="14c9h9jqn4h6y28bacvhaib27cr64fljyiw8h7anrlfgqmn9v7hd"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAither = derive2 { name="RNAither"; version="2.30.1"; sha256="0n2wj8gldiiqpyl7i8i8ys6z4kcv076wyhsc5kirmvrzy031g7ls"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; RNAprobR = derive2 { name="RNAprobR"; version="1.14.0"; sha256="0p2cs5ybkj2yjqkcpmrxggm874y05nnz85milx8hix2vdsx6snc7"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; }; ROC = derive2 { name="ROC"; version="1.58.0"; sha256="1qxmxhx5dqnrvp2076512p64rdanaa7cd95zrs783255ifq5jb0v"; depends=[]; }; - ROTS = derive2 { name="ROTS"; version="1.10.0"; sha256="137c06g5w7mjw3b1mly7b7n9iix4fcy23c7a9ym9iz8dazwhzwn5"; depends=[Biobase Rcpp]; }; + ROTS = derive2 { name="ROTS"; version="1.10.1"; sha256="1d5ggkk47xybcaizfy756qimbf2falg9cld46mhqjp3xfbfvzsg6"; depends=[Biobase Rcpp]; }; ROntoTools = derive2 { name="ROntoTools"; version="2.10.0"; sha256="0v0g4kpz3sc1aikwn59vjy75g0vdblw1nz0qrcwz48glh11qpzdz"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; RPA = derive2 { name="RPA"; version="1.38.0"; sha256="04spiv0wp7wm6yx0c4qra148n381k9488j79i91by1qi79zm746z"; depends=[affy BiocGenerics phyloseq]; }; RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.4.0"; sha256="12r2i9dla3ids1ycfdm670qz61fkf9h5mdzq0q65jaw311dbnspq"; depends=[]; }; RRHO = derive2 { name="RRHO"; version="1.22.0"; sha256="1p84kgin1vf6vy7la5v0d10l3kv2mnhbjxjykw7yk9faf8xnmsah"; depends=[VennDiagram]; }; RSVSim = derive2 { name="RSVSim"; version="1.22.0"; sha256="0d99cmazqlsqy58hjs2x9ziyqs7qg084rrp05vnq7ncki7a6bfm1"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; RSeqAn = derive2 { name="RSeqAn"; version="1.2.0"; sha256="0jphw3yadhgg0c93sywb7fblv2z54nq6lqrb4p7qx9v2rsv5dvqz"; depends=[]; }; - RTCA = derive2 { name="RTCA"; version="1.34.0"; sha256="1i98g102kw3j36y95f5pjs1frahlx0ibmhv6jpq3gns4da0zcx8j"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.12.0"; sha256="09gp3g2saizlzfsj8lyl3wz37hfcjjrm0qr4vp3y1lkny3x640dw"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCA = derive2 { name="RTCA"; version="1.34.1"; sha256="0hhk3py6d1r4rl8xim2z3j266dx1bnxk1pxc24k61k5ni05nxjpw"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.12.1"; sha256="15ibhz60z2fgvpji8kdmpvsdprzqnc0wk4gd6kdrkr4m2s0jgw4j"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.12.1"; sha256="05gmj49hz4mdpsmp1brzha3swybgm1sqf6jyhnj8w2arwc0bh72y"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges IRanges limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.6.0"; sha256="0yyb4747fj44b7x8fk2d0mpxaj9m1wy7jir1vazpynph2nz9qsl4"; depends=[data_table igraph IRanges limma minet mixtools RedeR S4Vectors snow viper]; }; + RTN = derive2 { name="RTN"; version="2.6.2"; sha256="1r47a2v413h9s746c8jd4n98jf61jvj57hmr7xdw47dhj5xrpf0q"; depends=[data_table igraph IRanges limma minet mixtools RedeR S4Vectors snow SummarizedExperiment viper]; }; RTNduals = derive2 { name="RTNduals"; version="1.6.0"; sha256="07lv2papqcihzkkax87fhgayzydygh9r5rp9209qf2rds7m45fa3"; depends=[RTN]; }; RTNsurvival = derive2 { name="RTNsurvival"; version="1.6.0"; sha256="07kkrgpwd84ai8fpz63gqarz4kyddjqprsqbhjm4zmlhvbfibshq"; depends=[RColorBrewer RTN RTNduals scales survival viper]; }; RTopper = derive2 { name="RTopper"; version="1.28.0"; sha256="0blpza1kq7qh9yb15hrmkfrc7awljafwxkr5kq368yk2gkvjny91"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.16.0"; sha256="0xb3bj3n06cb9xddkv77a8svhg4fl1azlfmibwrm9mq9464kgf0m"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.16.1"; sha256="0qk7q3ab7k133divfkp54zsmvsmb9p8r09pkh2caswrzrn8achzv"; depends=[Biobase EDASeq edgeR MASS]; }; RUVcorr = derive2 { name="RUVcorr"; version="1.14.0"; sha256="05lg37rmf9skqcpnd08v6wnh7sfs449hwwq6nw2hkgy9faip14lz"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; RUVnormalize = derive2 { name="RUVnormalize"; version="1.16.0"; sha256="1habqdv35v9ypvfmfaxjqpka67bs6hzf4ph9b0gqd67mbfnb49dv"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.4.0"; sha256="0v5krr34ihl2ybx9q1jvaiywd58px7406xvmwp7mxkcg96cnyqh1"; depends=[gRain kinship2 snpStats]; }; + RVS = derive2 { name="RVS"; version="1.4.1"; sha256="0jvw1qvmsgnn5v4dy3aynfnic8njk1h376k4j2xh47dv93d0kg5v"; depends=[gRain kinship2 snpStats]; }; RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.6.0"; sha256="1w02nnxpmx05gn6d9kjnahdn9kynbg1szm96c03gh4961zknn3r3"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.2.0"; sha256="022vckcc46bkhfhi2fzgawhf54hi6y2p5ia4v3x3lj221d7hcaax"; depends=[dnet igraph Matrix]; }; RankProd = derive2 { name="RankProd"; version="3.8.0"; sha256="0jmpwpmj3y13ylk7riyicywpring14dhq4862jgalsjjwa22zzd0"; depends=[gmp Rmpfr]; }; @@ -682,11 +682,11 @@ in with self; { Rbowtie = derive2 { name="Rbowtie"; version="1.22.0"; sha256="00vpszsjkvid25sjrpzw1dylwmgv27z67njvg8h1axnb09a7gnjw"; depends=[]; }; Rbowtie2 = derive2 { name="Rbowtie2"; version="1.4.0"; sha256="045cmfwqzcj4zn6r16hkpmr5sd5y0mxvrs5yynf460fdz2p418cr"; depends=[]; }; Rcade = derive2 { name="Rcade"; version="1.24.0"; sha256="0xx19zxrfjawny75cmp75f1aarngmz8p0vy2ryw0v1qdfm1aby87"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - Rchemcpp = derive2 { name="Rchemcpp"; version="2.20.0"; sha256="1g49dndhh8ivz9g67w8gzp2phy94xkdf1h7f309k3ds49bl9df9b"; depends=[ChemmineR Rcpp]; }; + Rchemcpp = derive2 { name="Rchemcpp"; version="2.20.1"; sha256="00sb9xaj51vna030c6nkb27r3ymj98a27kl97ksa86di3a8n4162"; depends=[ChemmineR Rcpp]; }; RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.22.0"; sha256="10kk9h1cknpdgbmn5k7aabrfr60n66i5yjxbj81x7ji6yk1ramcg"; depends=[flowType graph Rgraphviz sfsmisc]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.2.0"; sha256="046gyf1yw14zli2pbnyg10iw579jlaip37d8llajgc8qmfdrln58"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.2.1"; sha256="0ggwhfm5yl68qapbr3sxz206mpc8vqi9g4x3isxvrcf94q9jb7iq"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; Rcpi = derive2 { name="Rcpi"; version="1.18.1"; sha256="1fr6wr1w7xyxmqhpmgwcvfxf0m43gxqpfnrpkm35rya2lkk4994h"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rdisop = derive2 { name="Rdisop"; version="1.42.0"; sha256="15db2p9z5r1sl99n3afya6xr11hmc9d2fwzwc6zhkizy2mgj3r1m"; depends=[Rcpp RcppClassic]; }; + Rdisop = derive2 { name="Rdisop"; version="1.42.1"; sha256="0pir401z19wx433sxr2r01a5ckd4myygyv0jxj4wfq1fkfpmi1kl"; depends=[Rcpp RcppClassic]; }; ReQON = derive2 { name="ReQON"; version="1.28.0"; sha256="1llklca4bz2plkmwgvpw7xrn8hxh1vnf6sk91z1yzld49w1b6rxc"; depends=[rJava Rsamtools seqbias]; }; ReactomePA = derive2 { name="ReactomePA"; version="1.26.0"; sha256="1kglvgn1sjnx9rm45lxp0ji19vzb8qlvjs01agsdbvkn19im5nkm"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; ReadqPCR = derive2 { name="ReadqPCR"; version="1.28.0"; sha256="1c1l7nmnv6bcgnamjja423w5lmfsz8wiv4gv0x22ym1mv3293776"; depends=[Biobase]; }; @@ -694,7 +694,7 @@ in with self; { RefNet = derive2 { name="RefNet"; version="1.18.0"; sha256="0z7k4f38gphmxqjwvwhp2q0l6ljlpzhl69v1yja0c7gfmhr1lq55"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; RefPlus = derive2 { name="RefPlus"; version="1.52.0"; sha256="1myrgsxh9713hrzzhzln20iabq520xqdmm8narg79wla5rh3vcq7"; depends=[affy affyPLM Biobase preprocessCore]; }; Repitools = derive2 { name="Repitools"; version="1.28.0"; sha256="1v08fmn4al3rh20zr3afafmxyapdxylbbsf5s8j1wwfz60ysv557"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.22.0"; sha256="0n4vih0j9rsiqwwvwcnk3xfi6dfbiwih11pjinjqcc7q3sbpxyj5"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.22.1"; sha256="1g9pw6gjc6a81758zd1c1ci9q2wy7jcg3kn3iq77cb0kgbqdb5ia"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; Rgin = derive2 { name="Rgin"; version="1.2.0"; sha256="0jj8asqp7p45rlag34m0x2lasw6mdj4rdi4ywnm5bk2cim50pji6"; depends=[RcppEigen]; }; Rgraphviz = derive2 { name="Rgraphviz"; version="2.26.0"; sha256="0bp6517xsih0wng2rgkh9z4r1afqhwl3h04z6ssm7p4cdj0ahm4y"; depends=[graph]; }; Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.4.2"; sha256="06bxd3wz8lrvh2hzvmjpdv4lvzj5lz9353bw5b3zb98cb8w9r2j5"; depends=[]; }; @@ -704,40 +704,40 @@ in with self; { Risa = derive2 { name="Risa"; version="1.24.0"; sha256="1ln68rxv7wx96b3p2fh70jva07j9hj1cfflxyw34i32qkp2840hm"; depends=[affy Biobase biocViews Rcpp xcms]; }; Rmagpie = derive2 { name="Rmagpie"; version="1.38.0"; sha256="0di8vf3cj7y2srydjq74r7gmksqhjh3r8wmffq1k96knd68nx0sx"; depends=[Biobase e1071 kernlab pamr]; }; RmiR = derive2 { name="RmiR"; version="1.38.0"; sha256="0gv6cm5mh54xh2n25mpy6ak849rcppnajq04y7nw9hjv1i66g125"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.0.0"; sha256="08qgk2ap48i6g3cz42ddzj44m5r5zf1ncwwwid7282bv4422j2m3"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.0.0"; sha256="12rsx6yn7v02rhq5vyhig4rynrac8anp3c2scrvif4j21m7x3rnf"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.14.0"; sha256="1n9hra22aqfdz5clmpw4ikjz9sp6fb0haq7dv1l3jhgz4l2yj8n8"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.0.2"; sha256="0v4gx4zdpfl5gh1z9m9z1gjkl749zga7w210s284c1fyhnpn4anp"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.0.1"; sha256="0lfvl0k138dhniffb4c8wdicsihajr6rnrfmmmcgxk2wh6ciibi5"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.14.1"; sha256="1gxsp3nr5ww3xlqyac704lczsa5xxyz748lpfpkghj4mi3h0lwa8"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; Rnits = derive2 { name="Rnits"; version="1.16.0"; sha256="1l96jvyq0afkv2k3gasf0420wbhrs1nv1f5xx0h9f4mhcx81hr7q"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; Roleswitch = derive2 { name="Roleswitch"; version="1.20.0"; sha256="15cb4gbwgkjvidfdlvc2qf62jf3nvddqni9bbymcyi2pnpd1n6lr"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; RpsiXML = derive2 { name="RpsiXML"; version="2.24.0"; sha256="1l9p5mi7b78cwh4pvwqwxx15rr4hms11m5r0vp0d2krfp7ih9m8h"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; Rqc = derive2 { name="Rqc"; version="1.16.2"; sha256="1cxa6c9k9ahcji2c979hr0xz9hv7m8w4l6aiczfdhcnjraa4k2qq"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="1.34.0"; sha256="01v4bjhj2i126pwyk0v9lvmfp2ih495xsq903k3xa2z24bjxphbi"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; + Rsamtools = derive2 { name="Rsamtools"; version="1.34.1"; sha256="02paq7klabdkaf1b8pmmbpmyqsj3yncnfsz62rgka6r4dpsilwk9"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; Rsubread = derive2 { name="Rsubread"; version="1.32.2"; sha256="1kpishka8m9vp0zjmpmmg4g37s0iw8i01sa4zvwd9py18lc1arzd"; depends=[]; }; Rtreemix = derive2 { name="Rtreemix"; version="1.44.0"; sha256="013x6rdxsxynr8s0x8a1nk7xcanvgkm2lid9bip3v240bg9wwha4"; depends=[Biobase graph Hmisc]; }; S4Vectors = derive2 { name="S4Vectors"; version="0.20.1"; sha256="18whrw67nxn82xshckl2pjy7d14sa3c27h3n9naqyqwz88lr6dzg"; depends=[BiocGenerics]; }; SAGx = derive2 { name="SAGx"; version="1.56.0"; sha256="0p81jfm7fr907npbl1qrl4yswbz2a2pgmng5ww68xwmkayxkns79"; depends=[Biobase multtest]; }; SANTA = derive2 { name="SANTA"; version="2.20.0"; sha256="1x4sq1vxvgrngq5aahbc2sgn1vw8l3d4b24fm0lldvn2b8jprzx7"; depends=[igraph Matrix snow]; }; SBMLR = derive2 { name="SBMLR"; version="1.78.0"; sha256="02xcsaq2zlsvxj1zs2v4syw0k7fsiq826nny8kazvirkzpqmi446"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.10.0"; sha256="0gg0n4xbh7qbqnnyhnciz48ivxz3030hhbrg9zi0d0lm9ivjrvlw"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.24.0"; sha256="0gg7qhzla1fqypasbsdhm3w43gb0gyfa7nm23x0j0kdrwc2i07vz"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SC3 = derive2 { name="SC3"; version="1.10.1"; sha256="04hqbw8k3f2nki5c9brkjlqm072cyw1ppgwlr7id3xqmg4w38l6w"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.24.1"; sha256="00sfnc9pdw8j7gbrc6z4v9ji8kwndabr8zxw8agkbf2zz8pmq4jx"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; SCBN = derive2 { name="SCBN"; version="1.0.0"; sha256="0cfmpwpp9drz13rrrwg030db1jprxfw2nkxlwlwscaj1vb4q69fv"; depends=[]; }; - SCnorm = derive2 { name="SCnorm"; version="1.4.3"; sha256="15msh1lca3kwqs25pb4mx8278qk8nqv0x5i53r8z81xr6vfkyb0s"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.2.0"; sha256="0grkkr60hqalsb90w45x65i4wp1d4jqivqmzw4n75081v2nlyj1x"; depends=[qvalue SummarizedExperiment trust]; }; + SCnorm = derive2 { name="SCnorm"; version="1.4.5"; sha256="0gplv7l91bskx75vn4ihy8a0m9v64ny3jhshdx2xaiq0sw4nm1s1"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.2.1"; sha256="0cr1mazrbq4hc2gql7bj4pvqd1vdzvpmg6r3dhvybb4prpdl25ys"; depends=[qvalue SummarizedExperiment trust]; }; SELEX = derive2 { name="SELEX"; version="1.14.0"; sha256="1hcsngnxv4q0ig80nr91x1qlxi2swcx9xlvayng25izzjc6yj1k8"; depends=[Biostrings rJava]; }; SEPA = derive2 { name="SEPA"; version="1.12.0"; sha256="04dl578fm1zdd30q9d5dxhcm1xvkn19ijda07yxdsxifik4297fp"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; SEPIRA = derive2 { name="SEPIRA"; version="1.2.0"; sha256="1lvbx621kspl3ry8hbqgf2chins420vn26x81x5q1skvhk9s6h03"; depends=[corpcor limma]; }; SGSeq = derive2 { name="SGSeq"; version="1.16.2"; sha256="1s4pipdzppnixqx4x6xcy5pz1ps9mhjjxy1zj5h5dy2wi13mnsfs"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="1.2.0"; sha256="0f3fgcc6lw4mlxjzfi80pkz0hnn377zcw5vgaxg332xpm27iic7h"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC PRROC RColorBrewer scales stringr]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="1.2.1"; sha256="1gpcir6lcfg5q3m2zisvbnva8vx8mq1pml8na9nmkg92rdv42hwk"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC PRROC RColorBrewer scales stringr]; }; SICtools = derive2 { name="SICtools"; version="1.12.0"; sha256="06ypc7xqn8rpdyp16rlwsaw37gb94z9c980fwadbjvf2bzga5xwd"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; SIM = derive2 { name="SIM"; version="1.52.0"; sha256="16rkh4nnpm1bzq9z85s64fl09ymrwifmdcanwg4q8vnasqdcyp01"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.14.0"; sha256="1xkbdn06zi3nl6rv3viclisqzkcsd1bca0cxg1mygck2f9fpqih8"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMAT = derive2 { name="SIMAT"; version="1.14.1"; sha256="096cmj3xbcddyphy5z5ikwm459fqkibdxzqd24815z6yxld8bmf6"; depends=[ggplot2 mzR Rcpp reshape2]; }; SIMD = derive2 { name="SIMD"; version="1.0.0"; sha256="15ivvgjhsabg9lvdfylqv4640jvmk65kj1lb3z8h7fwc24qhr6aj"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.8.0"; sha256="1fxwz2v3wi6wfwqpy45gjvldx3xmnvq42laxxzyzv1lnhmvpmbwi"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SIMLR = derive2 { name="SIMLR"; version="1.8.1"; sha256="1j6v950dgbxbmwmn0yhb69six4cs1hlzr24dz7rxpdf84r63zsls"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; SISPA = derive2 { name="SISPA"; version="1.12.0"; sha256="1vqgm6wiymvy83zj71anqknvya0h03pwcavc0gn6dfmxc2rhhk85"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; SLGI = derive2 { name="SLGI"; version="1.42.0"; sha256="09665cxx7rl5aai10pcj5wwq90psygwpj5776vp8fjmv1bq8lgx8"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; SLqPCR = derive2 { name="SLqPCR"; version="1.48.0"; sha256="1izzqzn42pzfxx28qj5nviwqd63jicw9gifk1m9w2r3j7asqwpqy"; depends=[]; }; SMAP = derive2 { name="SMAP"; version="1.46.0"; sha256="0aqlqq0q5f5n9q8xfharzy55gx7p0gzijndbljj656jpy5dq6l9v"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.10.0"; sha256="1gy2331c6rmwpz7rl5g4666f5q7l5h8iby6mazv074vrf3xqzk18"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SMITE = derive2 { name="SMITE"; version="1.10.1"; sha256="1hmsv8i1np9m4dgskwjjzmprdixvx9yakx6y2p2icsjsppvqd69l"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; SNAGEE = derive2 { name="SNAGEE"; version="1.22.0"; sha256="1r9bvjc9l3xs1i9hrfzajhv6yb25qgnjgh1wyxrg0lky0n00z93m"; depends=[SNAGEEdata]; }; SNPRelate = derive2 { name="SNPRelate"; version="1.16.0"; sha256="0p6lrjj0v63f2y31727my72c4pnqmyb22d6rpi3yk556d21nlbyr"; depends=[gdsfmt]; }; SNPchip = derive2 { name="SNPchip"; version="2.28.0"; sha256="0vlrgraczyv4si4mrgssh6ijvq02qnb5h186rzqz0ssscjndh111"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; @@ -745,62 +745,62 @@ in with self; { SNPhood = derive2 { name="SNPhood"; version="1.12.0"; sha256="1f6rhlkisdx8psl7d2anxm03l205aas2iwr2par2q4bl3v10aqky"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; SPEM = derive2 { name="SPEM"; version="1.22.0"; sha256="1qy92c8hjlxiji8bwzfmwf2nndnafqfmxpkxxwz3xsa9nvbsy22j"; depends=[Biobase Rsolnp]; }; SPIA = derive2 { name="SPIA"; version="2.34.0"; sha256="1x9rkhza6wky0wfy5bb4bjlmwlhpap9l7mc2svk15nv6r7dwr0v8"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.8.0"; sha256="0v7v4w2jzvrqyrmkxxb4mirrl3x5g5adczs6g3p8c2lfdz2gg36k"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.8.1"; sha256="0s9cr79xarry5g2s1qp0dp0lp6y49asnbc4dcdrm9j7gqmd78s3l"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; SPONGE = derive2 { name="SPONGE"; version="1.4.0"; sha256="15f7n452nn0avkylvrh49c2s9k2bnfzn4i6d58k8dp71vld0n07i"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; SQUADD = derive2 { name="SQUADD"; version="1.32.0"; sha256="02z9mcbwaprjpwbbbyxi50hkhi13zm4sa9qy43bkha98i2r2flkn"; depends=[RColorBrewer]; }; SRAdb = derive2 { name="SRAdb"; version="1.44.0"; sha256="1d2fbgzz9vrv1z8wj5pgi8f31dbd6zh8kn76qw972b3s3zd9apni"; depends=[GEOquery graph RCurl RSQLite]; }; SRGnet = derive2 { name="SRGnet"; version="1.8.0"; sha256="0xcnkdnh7ihjay60fig6vq3xs5953m9ar3pysrka8yi1pfk9j4xx"; depends=[DMwR EBcoexpress gbm Hmisc igraph limma MASS matrixStats pvclust]; }; - SSPA = derive2 { name="SSPA"; version="2.22.0"; sha256="0gizdw5l9lnqxsyijbdabbf0xp2zdyfc5hixnw6013484c0dgc7b"; depends=[lattice limma qvalue]; }; - STAN = derive2 { name="STAN"; version="2.10.0"; sha256="0f1aks069z8sh8r05v36vbr6a2bvc34i1byidrq4irgm0dgf2q5r"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + SSPA = derive2 { name="SSPA"; version="2.22.1"; sha256="0540i0yfpxzyx2cvsfmd6ymsc4shalpvx134fs9rhaw9l9y17c9n"; depends=[lattice limma qvalue]; }; + STAN = derive2 { name="STAN"; version="2.10.1"; sha256="0fm0y4nks74rqn5fwq8mrg687mnikjhf2rg7fk815l2d52zpsqgk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; STATegRa = derive2 { name="STATegRa"; version="1.18.0"; sha256="0928yjgaqgx0axiwfrff1dhqcqbjh5hqdsf8607da4ncf58qcglk"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; STRINGdb = derive2 { name="STRINGdb"; version="1.22.0"; sha256="0xfcxq1h4c756rfz1pkcq8zigf0lacrskxzid28lzawd047l224h"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.6.0"; sha256="062w29y2yqqxybhfi8w502064bzsrvfs2fngq8sbn6li8iy6pw3k"; depends=[Biobase BiocParallel cluster matrixStats]; }; - SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.8.0"; sha256="1d3vswkr2rxqvc0v7vax78f1gff04ci7i052csk8hy7i255hxlrw"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.6.1"; sha256="1iw5q8mz8fgjx9prgdp5y11gnrz37rjllbb2xmlvvk92xc06s3f3"; depends=[Biobase BiocParallel cluster matrixStats]; }; + SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.8.1"; sha256="0sd2bhx19pynwm2k4811k0l846cc9vdhf9g7h73kjipmh8fq42lg"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; SVM2CRM = derive2 { name="SVM2CRM"; version="1.14.0"; sha256="0m8x176kaf7k4zfb7cyxan4if42v4g3w3yr24a35d3a0yhn9lkgb"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; SWATH2stats = derive2 { name="SWATH2stats"; version="1.12.1"; sha256="1j92121a48lz5bvxa9p3k1h7j1qi0za7z1vqmi683afn15j7cbmb"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.36.0"; sha256="0rim0hmdd5slxv7mw0vxwnl3jz2gfjq4vwc8hganp8x313p9ry71"; depends=[]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.36.1"; sha256="19mmpn10m1vr9c13c9s26jmfhi2ha3w8nkldw2r6ci61vwldicrx"; depends=[]; }; ScISI = derive2 { name="ScISI"; version="1.54.0"; sha256="1xs5vwgvcq72jiir5sl99z9pa4kh28jaidj1h31cvfsz0yjkfsl9"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; Scale4C = derive2 { name="Scale4C"; version="1.4.0"; sha256="12d8l6j57gwnrigzyprfw03rzgsni7n75ws2hi1ldybx7bx3nlag"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - Sconify = derive2 { name="Sconify"; version="1.2.0"; sha256="0848xx1miilk4hn0nxv6wbydxha48z2lf480hxhaims5wn2ckvrz"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + Sconify = derive2 { name="Sconify"; version="1.2.1"; sha256="141iq9k1psyc25vf1i8hh52i3dckas1l928yjr59p25qng0z4hfy"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; SemDist = derive2 { name="SemDist"; version="1.16.0"; sha256="086lparkzxssz78dn67x4f7c3pw45y7gj2ldvhmkfqyynfm57giq"; depends=[annotate AnnotationDbi GO_db]; }; SeqArray = derive2 { name="SeqArray"; version="1.22.3"; sha256="0014pgklkjkrl7k15fln02gwa2k3z7kaaaq7jc7xjpc35s5bbikd"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.22.0"; sha256="0k55v5i58khgxcghb8z09a2hknlif6wkba4mgfn29q1y02krvpfr"; depends=[Biobase biomaRt DESeq doParallel]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.22.1"; sha256="1c4lfs9bfdmbq732c13fvph5gwp6ac0fxa489al9lghwxnbkjpqf"; depends=[Biobase biomaRt DESeq doParallel]; }; SeqSQC = derive2 { name="SeqSQC"; version="1.4.0"; sha256="1dg4dm45s7l5dgq2cr6g9a5a65jlpf801z3a1x42h36ybgs7gg3j"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.20.0"; sha256="1hngny8zmq631acbc3b26qhhvsji92zw0ww3z3sf8sxkp68g3i9k"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray tidyr]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.20.1"; sha256="0rfpbasz30r51kqbgmy1l99famly9ynzaq4nbdd13fsz0dqwj2xw"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix rlang S4Vectors SeqArray tidyr]; }; ShortRead = derive2 { name="ShortRead"; version="1.40.0"; sha256="0iks123i1adkb9i2q4wvfqdmmj9dy867jvngj9757y8gj6xbcpy1"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; SigCheck = derive2 { name="SigCheck"; version="2.14.0"; sha256="0k00lrzpjfdcp3yvjbd1bc3710pa0dd884k4yyq43nv0cv9f4szp"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; SigFuge = derive2 { name="SigFuge"; version="1.20.0"; sha256="0z78yg43wklzrpqawpprgb6nm1wngkd97g09aa9nzv91p05k85dp"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.20.0"; sha256="0n5awvsjz215g6h0kz6mzhzxw3vnhbf16b1n3bkqb7kv4cdrd4vq"; depends=[Biobase limma mclust Ringo]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.4.0"; sha256="19r4r7djrn46qlijkj1g926vcklxzcrxjlxv6cg43m9j9jgfs3dj"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.4.1"; sha256="12139kk9cqgzpm6f3cwdsq31gj5lxamz2q939dy9fa0fa54gdaq4"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.18.0"; sha256="013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; SpacePAC = derive2 { name="SpacePAC"; version="1.20.0"; sha256="1qm71d11ggwhkfk1rlq8zx2mjz7942ixcda1pgrd9m537zhjy469"; depends=[iPAC]; }; SparseSignatures = derive2 { name="SparseSignatures"; version="1.2.0"; sha256="0wvlsdr75na5zi92hgj2bnxcxm8z9p8f99nfg6x3jzi39binwfr8"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; }; SpeCond = derive2 { name="SpeCond"; version="1.36.0"; sha256="0xx3wdfadw3jgmvvhsd2irdgqdd8pwlprcy07i3j2vja9ji0cx5f"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.12.0"; sha256="1hsf03d8pfwdrh0dwpqgl2wx64wyfp09ashv8sw9byh8xx6czci1"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.22.1"; sha256="0bn7isfjwgyndp5b9afdvlm4ivbdrzna1hvjnzrjsd1h18cas90j"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.12.1"; sha256="1xz6rygpdc6f78dcg56fqblair1dswn2r6afycny94m3kllhc4hb"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.22.2"; sha256="19isf8wxy7lpaqr4zy5319sx9r2bm6mh8djgcbabg6ns198iy0kq"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; StarBioTrek = derive2 { name="StarBioTrek"; version="1.8.1"; sha256="0lhad99k077sknbvlyd1hpgn4swgkq9lg76dxq7hs1aj1lamqx8d"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; }; Starr = derive2 { name="Starr"; version="1.38.0"; sha256="1rrs366d8yr02077v34l6yr8w361s94zira2gcf935kkmfrclgij"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; Streamer = derive2 { name="Streamer"; version="1.28.0"; sha256="163rhpr042dk5ch47yrgfjsa5hnbhbz4jcnisvlcmmp0jd12qsrr"; depends=[BiocGenerics graph RBGL]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.0.0"; sha256="0x7m57s4qf57vsphczcfa9w4knrsh6nghmdrp3jzrr3ci2a6pjfw"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.0.1"; sha256="18gmzwxjwg8j63z213x8r0j6jpmgx4yca29495c2hp4r9gv6hbzr"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.12.0"; sha256="07805572xhpj5mfwq6kw1ha21wgalqvhh4ydvafyl1bnf3r20vps"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; Sushi = derive2 { name="Sushi"; version="1.20.0"; sha256="0dv5di0hgbvk9cxnqhyf18mdjl50k6bk00a89r6zgp83rbxwr1r8"; depends=[biomaRt zoo]; }; SwathXtend = derive2 { name="SwathXtend"; version="2.4.0"; sha256="0986srxbi3f7pfnhghh9dznwrl9k5qrcmcf1vqa3lg06bwz7pbsc"; depends=[e1071 lattice openxlsx VennDiagram]; }; SwimR = derive2 { name="SwimR"; version="1.20.0"; sha256="0sgci3rs4kak79yibcvxw3mjb30y9q8hacqykrpav2sjyqc6fcy1"; depends=[gplots heatmap_plus R2HTML signal]; }; - TCC = derive2 { name="TCC"; version="1.22.0"; sha256="1a4r952qplq5kidb6zb2kiza57lrgzlg0f4zfhk2v8x355ymggpy"; depends=[baySeq DESeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.10.0"; sha256="17d1a00ly4zhhi3zsmha5f72vl45r5ac88gvn9nyffhabkqjrq9l"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; }; + TCC = derive2 { name="TCC"; version="1.22.1"; sha256="0yfjlr5pgdnkrcv97cqhkm5xdn7dlspbf3fd60ai8zm2iw62x031"; depends=[baySeq DESeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.10.3"; sha256="0kc3sw83mq07wglgdkfchvzm2hp7pw8qfaj9zp7jbiivzxj15bc2"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble tidyr XML xml2]; }; TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.8.0"; sha256="1af30xy7yk9hqwc4gcr02nprgxgn2ivq6cb2jigzabhi2bjmm70q"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel IlluminaHumanMethylation27kanno_ilmn12_hg19 IlluminaHumanMethylation27kmanifest IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest maftools minfi pathview plotly readr shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; TCGAutils = derive2 { name="TCGAutils"; version="1.2.1"; sha256="1ilvh59qz6bp6pgvcyj51xgmf2kiz416211h8xn8z4kvim5dvpra"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.6.0"; sha256="1h8f1xw20rm8la5g91m1408rq96ib0h6xn6s482m51z54qga5w3v"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TCseq = derive2 { name="TCseq"; version="1.6.1"; sha256="01lakq59skdivgyb613x4rwxfap9iiccwi2ixd0nl7vw97wsjfc3"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; TDARACNE = derive2 { name="TDARACNE"; version="1.32.0"; sha256="0b7p7pl9sn2g3f7wv405nwng2xknxqhdwqm2bkr4czxcrmwdal5f"; depends=[Biobase GenKern Rgraphviz]; }; TEQC = derive2 { name="TEQC"; version="4.4.0"; sha256="16aj8nadcpnv1lqqz7pfss7vc2s5h0k79ahxb4l4405j8yrf16hl"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; TFARM = derive2 { name="TFARM"; version="1.4.0"; sha256="1bi7j7x8libijsf7c144fbf456f5vhaj8b3avdil49qa4k78623w"; depends=[arules fields GenomicRanges stringr]; }; TFBSTools = derive2 { name="TFBSTools"; version="1.20.0"; sha256="18iqr2xsmgkmm5x4dz1vm9ig13x9vb1kvqxc0gpc4pzanf3w6jrp"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.2.1"; sha256="102jb5bh0jhr0244cy96zsc5jrgsjh7amf8kdmfmhx21spq1l59a"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.2.3"; sha256="04qhwx6kmgyiasm2kynacwmd0i17b1bxr3ivg7jw3nr2dmg21h4g"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; }; TFHAZ = derive2 { name="TFHAZ"; version="1.4.0"; sha256="18mfmcbb5vfr2c96gai3hdzvbb3jzfnmmrclcdp9shrpwg6l1ipd"; depends=[GenomicRanges IRanges S4Vectors]; }; TFutils = derive2 { name="TFutils"; version="1.2.0"; sha256="1gppabscwfbqyvwrnl7mppw9wp528plp3bxq7g73hhgackfwnwkc"; depends=[dplyr magrittr miniUI shiny]; }; TIN = derive2 { name="TIN"; version="1.14.0"; sha256="0n5lx8pg066z9adjsfnslxw6fv0w0ibv7nk2yz8qaiq6zivvcc1y"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; TMixClust = derive2 { name="TMixClust"; version="1.4.0"; sha256="03i9fgq29xr3h72c2scb4fa6305l7bpwj6hgk0j1v7ark6xz5xqz"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TPP = derive2 { name="TPP"; version="3.10.0"; sha256="10bd2iihcb51j6wanv9gnrknfh0csc5d4vh9s23w01n8x0vc74hs"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; }; + TPP = derive2 { name="TPP"; version="3.10.1"; sha256="00rfxhzamz45phav239xki8jy9bj7f0r03wrl9d09ir5amis271p"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; }; TRONCO = derive2 { name="TRONCO"; version="2.14.2"; sha256="1cqkk6zsfsjpq8iidvmpfvkfak3ryp2bl9p04in0sn8sl9is6nsq"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; TSCAN = derive2 { name="TSCAN"; version="1.20.0"; sha256="1yas32djld4dlsmzi65dflmnrff48m7vb6j7wgr44jip416mh7l1"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; TSRchitect = derive2 { name="TSRchitect"; version="1.8.9"; sha256="0i5i7m2rfqgnr2n39hfdgbvlhm8aqa6c77i7jvp66lapskww4rgb"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; @@ -810,12 +810,12 @@ in with self; { TarSeqQC = derive2 { name="TarSeqQC"; version="1.12.0"; sha256="1p1fwmkikh6a6sff3hmdxc3z4ypxz2iv1j544gfmsq47pibn8cgp"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; TargetScore = derive2 { name="TargetScore"; version="1.20.0"; sha256="0kxiv5rghq3fw416gg3z7gfram146hjaf5pjd5hbyvy7rydilvbz"; depends=[Matrix pracma]; }; TargetSearch = derive2 { name="TargetSearch"; version="1.38.1"; sha256="0gk91i4g5ly6y2xzs8h8f90w3pm6mp3habjjy2bv60jsqxpi3pcb"; depends=[ncdf4]; }; - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.0.2"; sha256="0ajgy6bkcdxg7qvwibccb438r3dd50w23dwvrcj43vm9zgcf6jay"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.0.4"; sha256="03ny8w0z29jblph8nsysrqm7l2m2qpij52415vv1an4wpv821pgd"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; TissueEnrich = derive2 { name="TissueEnrich"; version="1.2.1"; sha256="13nbcrj441wrbjn8xbrb8fn802bimhnaxjb980bn55l0ix7npy1c"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.20.0"; sha256="1lgqdhi63jimwfhkh07br8jn67xh4yxgfmx79bhvhq0m6gfgqhcn"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.20.1"; sha256="0vp5i30n3f8kschal06i3v4szl1vl3lvry522csxdax3pram90g8"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; TnT = derive2 { name="TnT"; version="1.4.0"; sha256="0cza7l550ly35w0c1xjvixgxwdl53v90q0rnb6i7jj6yxgq4ppwq"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToPASeq = derive2 { name="ToPASeq"; version="1.16.0"; sha256="1k1p9cn5cksc0k4l4hlc0ii3jizdq66a7ira95jdgkzqpnh2ssdh"; depends=[graph graphite Rcpp]; }; - TransView = derive2 { name="TransView"; version="1.26.0"; sha256="0rkfcykfsrgywmp92c4nydvfn8d2adcn24r9g2zv36zm49whmwbh"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; + ToPASeq = derive2 { name="ToPASeq"; version="1.16.1"; sha256="0j54fvcs7ynd6n81x07r2xra3l1fr1yfv8gf46r77gzmcn1y39vs"; depends=[graph graphite Rcpp]; }; + TransView = derive2 { name="TransView"; version="1.26.1"; sha256="1y2cdyg0hixm3zxasib18ql9917vnf43cjn9wpkx52fqfwa62ly3"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; Trendy = derive2 { name="Trendy"; version="1.4.4"; sha256="0vmm2gvg3yb5chqj4fg5l0x86zm19vj5zcj32nzgba6c1s38qxhb"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; TurboNorm = derive2 { name="TurboNorm"; version="1.30.0"; sha256="0a3f1zgj914rklrdilcnqfcr4g3mhg1bzfzxr6nn2cqin47hlakp"; depends=[affy convert lattice limma marray]; }; TxRegInfra = derive2 { name="TxRegInfra"; version="1.2.0"; sha256="03bf4bk1gwiy3bqlihczy3fg5vw66nkfi1gg6s6szy2hh8jrd2js"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; }; @@ -823,17 +823,17 @@ in with self; { UNDO = derive2 { name="UNDO"; version="1.24.0"; sha256="0yins1aw7gfp5qxmsai4l59nl5i6diq1h2frvdshsg6dbfxkzy67"; depends=[Biobase BiocGenerics boot MASS nnls]; }; Ularcirc = derive2 { name="Ularcirc"; version="1.0.0"; sha256="1h4pv78x78wlgq0zmdjgdapjp7bxzdkw078pq9h6xzhkwvmyilz3"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; }; UniProt_ws = derive2 { name="UniProt.ws"; version="2.22.0"; sha256="02rb0ygc3pikb8qbi8134n9hjzza4n3bvqbqfl5dqb2n1ibkknmq"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.2.0"; sha256="030na1hp7c91svpqc5c3j6hvhrzcqxfb33j7bb05v5gpqnydsc5m"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.2.1"; sha256="0wh57344icpd84l4gj7lz2n75mhpw6ywsir7zj4ky83p30x066sr"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; VanillaICE = derive2 { name="VanillaICE"; version="1.44.0"; sha256="0v4bqcwbbzabmq1pcs55j3jlhqssr2jsr9hxh76p1n7d6fw4dgs6"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.28.5"; sha256="0k73ax2vjh0mqkfq82nk8cv475hbn9cblsizbf8d0d0gckdw884n"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.28.10"; sha256="0kxf583cgkdz1shi85r0mpnfxmzi7s5f6srd1czbdl2iibvrm8jn"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; VariantFiltering = derive2 { name="VariantFiltering"; version="1.18.0"; sha256="13z1x1v9xbdzsfn9x66b6sd18pla98cwd5zvxkwaiph8rp8bgvic"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; VariantTools = derive2 { name="VariantTools"; version="1.24.0"; sha256="1ml3pl7xnxvzr6zkypr80xzw6nffswk29gzxycn42473sc4ixn7j"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; Vega = derive2 { name="Vega"; version="1.30.0"; sha256="035f2ly3y5i4cirwvfham5kpyawg9scfvfvyn7ys4lyjxx59y4dd"; depends=[]; }; VegaMC = derive2 { name="VegaMC"; version="3.20.0"; sha256="0cgvfmwxrprrzgp0fxhi944y1z83h4mjv89iax2bshpwp1q5d9xr"; depends=[Biobase biomaRt genoset]; }; Wrench = derive2 { name="Wrench"; version="1.0.0"; sha256="12gfdj2p52pah67bimz14xcwmcb4c2snjwswj0fns7v3v1h9rlqg"; depends=[limma locfit matrixStats]; }; - XBSeq = derive2 { name="XBSeq"; version="1.14.0"; sha256="0lva9n2bs5xp7k8is0n8k34q2k3pkvsvg04dav3qbkqzi1xz5ky9"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; + XBSeq = derive2 { name="XBSeq"; version="1.14.1"; sha256="0na0jiqfy40bzl243gqc2214k4hibv6v4ndiqwq0c5f78cyr6lph"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; XDE = derive2 { name="XDE"; version="2.28.0"; sha256="034474qsc065z85wjlr8g695cpknh9kwbhzqdkh8fab2j06249sr"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.0.0"; sha256="0v5qy3af8q26mkwk5zwkja6pvxdgvif185j6c5ws80lh4kw0h5z8"; depends=[alluvial Biobase ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XINA = derive2 { name="XINA"; version="1.0.1"; sha256="0gwgcvipr014w96ds13kf3gap3fkvyq0vamdfds3nacd9h1hgmbp"; depends=[alluvial Biobase ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; XVector = derive2 { name="XVector"; version="0.22.0"; sha256="01fph1ydd6g0rl5mcw54spx22glq2kqv7wyw8bqw0plmabzcwwdm"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; YAPSA = derive2 { name="YAPSA"; version="1.8.0"; sha256="1agacimdd1m5yja2xbcsb83mns4svpxbjcsfrvm9ydqdj737i10j"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; }; a4 = derive2 { name="a4"; version="1.30.0"; sha256="1iqjy35rqx3m2y0dm2bk4cnzdm1qvbi608bfmrid88w6wmwz3qlk"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; @@ -864,7 +864,7 @@ in with self; { alsace = derive2 { name="alsace"; version="1.18.0"; sha256="1946iwghbsy0dcdpx7wl284prg5xikr0s7aj8pvv7gcmah8i9i7n"; depends=[ALS ptw]; }; altcdfenvs = derive2 { name="altcdfenvs"; version="2.44.0"; sha256="1fkly7m4fgah6v7a6fglxqzik2562q6hg6ffq89kbgnzgvab4xsi"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; ampliQueso = derive2 { name="ampliQueso"; version="1.20.0"; sha256="1dwphzsl45g537ic1m2bbg80dcilvhg1w8c02zlsxlihhid5rwy7"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; - amplican = derive2 { name="amplican"; version="1.4.0"; sha256="0wzf1ami896b23bcb3giyahf662c55x8mzhdiywv05n4kqbq7wnp"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; + amplican = derive2 { name="amplican"; version="1.4.1"; sha256="0wshidpdg3pqzmwshq5ics38gfmrwfqm803y83ynd7b0k9fch07h"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; anamiR = derive2 { name="anamiR"; version="1.10.0"; sha256="0yk56vkibnbfwlnixh5r4a9iw9pnmavl7lv4p0jdmv2wnx85gzgz"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; }; annaffy = derive2 { name="annaffy"; version="1.54.0"; sha256="16c6allp4vlx0g3nffanrm0mkkf8s2n31dccw4bflnx2pr81bmd5"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; annmap = derive2 { name="annmap"; version="1.24.0"; sha256="12047l7sc3ayvicqnlxc424kbvbiiz1nn4rczd1n50b8kzc25fjs"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; @@ -872,25 +872,25 @@ in with self; { annotationTools = derive2 { name="annotationTools"; version="1.56.0"; sha256="0hqy0mq6pkn05p2dv4pw24p697yvikhdn351adf2ynldy6f3sl9z"; depends=[Biobase]; }; annotatr = derive2 { name="annotatr"; version="1.8.0"; sha256="1rknhlndn9fxa68dbkqjphiv50xqp28vf1259k5w7vlm75vvdkdv"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; anota = derive2 { name="anota"; version="1.30.0"; sha256="182fp6dpws516y0igvwn6936higfqvy25haa0xs273f8aczr9cf0"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.4.0"; sha256="05p1h6mk4fb8q0k68bzqcs47iwjb0x44f5q7j77phw2n4kzq6ayl"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + anota2seq = derive2 { name="anota2seq"; version="1.4.1"; sha256="0b8jm1g7kyvrh3h2xxwcrs28yf5bvxp56bxbbhgd51kdd3ww4m79"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; antiProfiles = derive2 { name="antiProfiles"; version="1.22.0"; sha256="1div92hqrri8c0y5g37cc4ysi30gcklf82n6g0p98xwv54ks2y7j"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.48.0"; sha256="0f33p7w2kmf7lz8a4j9mg04qnfnn03k3qmvqmfggqm5gb5h7y69l"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.4.1"; sha256="01f4qlhg4xz9mc0gsmmrwxx644f2h1cgwi0f3fhy6srzjdfb6l9v"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + apComplex = derive2 { name="apComplex"; version="2.48.1"; sha256="01vzk1blgwn0zqdgzhr19haa0ixd78gphxrhjab27n9g8s60i3jg"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.4.2"; sha256="13yhm14cxw2gmckh7sjr1yy8q2x1wggmnbj2qp6zd7raq4l48qrb"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; appreci8R = derive2 { name="appreci8R"; version="1.0.0"; sha256="1ajk6q40dr5il19ffnsfglbh1rfn8ylwv08mw9wfpvc26x4znwak"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ESP6500SI_V2_SSA137_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_0_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; aroma_light = derive2 { name="aroma.light"; version="3.12.0"; sha256="0vfifgpqxjjncbiv6gvlk9jmj14j90r9f30bqk3ks9v1csjnjhrb"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; arrayMvout = derive2 { name="arrayMvout"; version="1.40.0"; sha256="1m3n2pqm40wsq7x7acspcq268608pnx58mndqfcbv813685b70p5"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; arrayQuality = derive2 { name="arrayQuality"; version="1.60.0"; sha256="0fbvlilz111ahlm50gmwwjydpasbplr0lpj3dz9apawi0jff4f4a"; depends=[gridBase hexbin limma marray RColorBrewer]; }; arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.38.0"; sha256="0xhzz9ixc5mp49cwpi4smdgdc3mrf1ppzhx8dpjahq1f7r3xnbb5"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.0.1"; sha256="0gjgpfljrr26b5g6813x84w0s01d9nhr7cw122bzv3jw777gpbvj"; depends=[AnnotationDbi biomaRt bit64 circlize cluster ComplexHeatmap corrplot data_table dplyr factoextra FactoMineR getopt ggdendro ggplot2 ggrepel gplots gProfileR limma MSstats openxlsx org_Hs_eg_db org_Mm_eg_db PerformanceAnalytics pheatmap plotly plyr RColorBrewer reshape2 seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - attract = derive2 { name="attract"; version="1.34.0"; sha256="0s93d6ms4pf2ivl7z602ackbnfwl5956g899ayn65lybikrrhcqa"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - bacon = derive2 { name="bacon"; version="1.10.0"; sha256="095z8fpfmam2d6iaq6p4pp2c7agisq9008wd49s7997a8a8rd7vs"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.14.0"; sha256="1vnhw2igd9b8lv4722mrwyv1ffif5jhr6yb5sy1sy122ga1ml4rr"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + artMS = derive2 { name="artMS"; version="1.0.6"; sha256="1dxjg7ykfw2w0a2cvpvfsp54g7kr8lib8fjncnzvwzcgi417y3xf"; depends=[AnnotationDbi biomaRt bit64 circlize cluster ComplexHeatmap corrplot data_table dplyr factoextra FactoMineR getopt ggdendro ggplot2 ggrepel gplots gProfileR limma MSstats openxlsx org_Hs_eg_db org_Mm_eg_db PerformanceAnalytics pheatmap plotly plyr RColorBrewer reshape2 seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + attract = derive2 { name="attract"; version="1.34.1"; sha256="1370w8qvmiv8r48hk29mlh53xs5a78qpz6pbax7fq7q9xip7fbs0"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + bacon = derive2 { name="bacon"; version="1.10.1"; sha256="1pd3p1cfggiy08458vplsy3s1zm5jqqcwrv4fks8ra2kf97j38df"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.14.1"; sha256="073jyv98s05cxx8n83c20chh0k1sbw8rndldcdfq3habahllf8si"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; bamsignals = derive2 { name="bamsignals"; version="1.14.0"; sha256="19irfx1y1izf903vq59wxsdbf88g143zy9l89gxqawh7jfxds8w8"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - banocc = derive2 { name="banocc"; version="1.6.0"; sha256="1549rk72a6alr2swssj2rqhg2zzszb1gz1cy4cz893c3zg14x268"; depends=[coda mvtnorm rstan stringr]; }; + banocc = derive2 { name="banocc"; version="1.6.1"; sha256="18n273xwc49mr3d7b83nxqivyr5zzgcbv6kajq8ha641f34nasw1"; depends=[coda mvtnorm rstan stringr]; }; basecallQC = derive2 { name="basecallQC"; version="1.6.0"; sha256="0l2w55lc8aknj3ivma3arp96j46hcfzw20k9js3dgx8k3sgalxmn"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - bayNorm = derive2 { name="bayNorm"; version="1.0.6"; sha256="1zlpk76rr95is94l8p06y151w3frv886b9v7mbjvxgsn7rxlkvs9"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.0.8"; sha256="192q47w0m0ngj7523fpgq9s8dzgdsi2dkyxa44c6yr5iyqsvyb95"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; baySeq = derive2 { name="baySeq"; version="2.16.0"; sha256="0f6yckihm5cwh3dycv2g54hf7nddhcqya4yrqwbir96y5k1d1km5"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.4.0"; sha256="11jq77ppagkg4kw1lbp5a2q5rdh3dcqbs12q9ykngjbb0gkjp0s3"; depends=[Biostrings Matrix Rcpp]; }; + bcSeq = derive2 { name="bcSeq"; version="1.4.1"; sha256="0izmzb341h85ixxdriiavwjjpw96r2pd2y9kwx9zi2rrbxa6wakf"; depends=[Biostrings Matrix Rcpp]; }; beachmat = derive2 { name="beachmat"; version="1.4.0"; sha256="07zgmms0qg8gw7x0js46965bbhpfj2aa1h5ixdz9r332bxv9cdmr"; depends=[BiocGenerics DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; }; beadarray = derive2 { name="beadarray"; version="2.32.0"; sha256="0xy75h98xkclsi2hxzz8qj21sm8fp3cy7ikmjsryvdbk7jwl6lgg"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; beadarraySNP = derive2 { name="beadarraySNP"; version="1.48.0"; sha256="1s1k5q1mczbnx5gdxa8r1igkmc8jw5dmnp0gl00q862bbsljplk9"; depends=[Biobase quantsmooth]; }; @@ -900,12 +900,12 @@ in with self; { bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.30.0"; sha256="0pzqchv9namv73nm2vr6wjny7ghja8bs73s7xp4ixyfg4d1i9h06"; depends=[bigmemory]; }; bioCancer = derive2 { name="bioCancer"; version="1.10.0"; sha256="17f72vs9h66ny9z0n4fbp6533phrdv60a7ck386rfvpgafdrqh7s"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; bioDist = derive2 { name="bioDist"; version="1.54.0"; sha256="1pl6z8yx1pns19y924x79ky4vqx180hifvy7n4mdhv6mjvhjkijl"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.20.0"; sha256="1wwk00c1lp6a5inna48z2hkb3xni8pcwjhf0qdwf2i70rkls2724"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + bioassayR = derive2 { name="bioassayR"; version="1.20.1"; sha256="1zf1ykmn3wq6jxb6k1v00qna5wjlh4yy7x35x2k6zqgn7df4607z"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; biobroom = derive2 { name="biobroom"; version="1.14.0"; sha256="1xfqa666n8h65y277a1g56r1z76x9fn0dnj45cqgx3ddaz0v1nil"; depends=[Biobase broom dplyr tidyr]; }; biocGraph = derive2 { name="biocGraph"; version="1.44.0"; sha256="0nq8wvssikkcrs3vffpy3pj79iydm44ffsx67q38kg51gc4ykipk"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; biocViews = derive2 { name="biocViews"; version="1.50.10"; sha256="06ms82pyc5rxbd9crfvqjxcwpafv0c627i83v80d12925mrc51h8"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; biomaRt = derive2 { name="biomaRt"; version="2.38.0"; sha256="1lshkknp7dmr3p6dd2zbv86cc71h53ggh9ji83jcjym8sgbbspl2"; depends=[AnnotationDbi httr progress RCurl stringr XML]; }; - biomformat = derive2 { name="biomformat"; version="1.10.0"; sha256="1mdxjrza526gn4jli0cjdcilspwb3c07nmjwy1l9mfmnlm7ca0b2"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomformat = derive2 { name="biomformat"; version="1.10.1"; sha256="1a4fhqmvabdpldybhjli5dpnd68qraccvd1f2zf7z2d1s17c9pgq"; depends=[jsonlite Matrix plyr rhdf5]; }; biomvRCNS = derive2 { name="biomvRCNS"; version="1.22.0"; sha256="0bzi8b4g1ki8gslkb2nkrl4fyrl5lj9qipq8lmr6zj924y3pkmnm"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; biosigner = derive2 { name="biosigner"; version="1.10.0"; sha256="04mny1lrgmwd1yy07qhim286xvm34802f12rbpsplb0xzwg09y6i"; depends=[Biobase e1071 randomForest ropls]; }; biosvd = derive2 { name="biosvd"; version="2.18.0"; sha256="1ngmnk4xakpf451lbx9libxwlsqz7xffaj53awkw5iakzmj7szb9"; depends=[Biobase BiocGenerics NMF]; }; @@ -922,35 +922,35 @@ in with self; { bsseq = derive2 { name="bsseq"; version="1.18.0"; sha256="0r0l4fwaq09n14bvqy01id569zimxwafs3xnp0zn2089512igis7"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scales SummarizedExperiment]; }; bumphunter = derive2 { name="bumphunter"; version="1.24.5"; sha256="1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; cTRAP = derive2 { name="cTRAP"; version="1.0.3"; sha256="14rfnqmp2mgnkyhgyvlplv4alnwm909pw586n7nc53r82ph4m0f0"; depends=[cowplot data_table fgsea ggplot2 httr limma pbapply piano plyr R_utils readr rhdf5]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.12.0"; sha256="05zr3z19zzs56gx06r43j6dl59q1z0hba9qfrb0ygvkvfj3h5rk5"; depends=[bc3net igraph]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.12.1"; sha256="1nqa1f5dbx11lfripaz2l7pkymcgi5vbiglhhk0kz4n0p5p1pjz3"; depends=[bc3net igraph]; }; canceR = derive2 { name="canceR"; version="1.16.0"; sha256="0kfhvkjc6mssp6jphac4p1f2sjc8j08apiwznj621w3wxa2gnkby"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; cancerclass = derive2 { name="cancerclass"; version="1.26.0"; sha256="1fsfxi95iyb2bhy64xdja4231bfs9byzzvdpsf6abd8myqaflcpx"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.16.0"; sha256="1l3rp7q2gcs35r8drnwbwmfa922yd810qjmpgc18xjbx12s7hnkf"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + casper = derive2 { name="casper"; version="2.16.1"; sha256="1wr7l1lri00g3fxafhjkj82y3nlh488x9ayjf4x3bcyv20d0lc2a"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; categoryCompare = derive2 { name="categoryCompare"; version="1.26.0"; sha256="1kb4b833wn5qf3d6vic0jf0p0h6dhgcpjnxnqd6b4bhva0y3jcfd"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; cbaf = derive2 { name="cbaf"; version="1.4.0"; sha256="10rcph5kk1kdd1idl7wvh766qfg25462sc0airwcsm2w6xw7xgqf"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; - ccfindR = derive2 { name="ccfindR"; version="1.2.0"; sha256="1z37afhsnf23bygka15jff4awxpc7s3k47biq8z75mxi58xdvmn9"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccfindR = derive2 { name="ccfindR"; version="1.2.1"; sha256="0gcbqjlb4jpxw2rswwgld5nazzzsphh8kdaqpjhn96qslkfxqlrw"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; ccmap = derive2 { name="ccmap"; version="1.8.0"; sha256="1vkkm455nhhg123jwl2kv3gdf3mvw5zab4whym0vh33rm499hrks"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.18.0"; sha256="0f94bd4iinaajv79bkf2qd6g89qlrznp23l3bv02sgb8yhqxrwq2"; depends=[infotheo]; }; - celaref = derive2 { name="celaref"; version="1.0.0"; sha256="08pddidi2l990n65nan8zsgay3l5c0l9hm8jgjsasc00a008qs0x"; depends=[BiocGenerics dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - cellGrowth = derive2 { name="cellGrowth"; version="1.26.0"; sha256="1hhxqfpnlhfz5hmmis6pxh1crnjr8yf8zy87zl88h6mzypdc76fh"; depends=[lattice locfit]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.46.0"; sha256="10116jg5fx4kp5m2xadb3b8dib623lrazzc62wm19mrghg9y6kzj"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.12.0"; sha256="1p818hsx2dqnd9x2aym26zm0was3ppnpyxg9si5fjh5h9inkh5mi"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + ccrepe = derive2 { name="ccrepe"; version="1.18.1"; sha256="10c6mypr2q3j420bvldl59h1y58i8l06piwqr1ji80z6r6xk96vx"; depends=[infotheo]; }; + celaref = derive2 { name="celaref"; version="1.0.1"; sha256="0sb1mg2ql09jf7hc5kszh3h9cajma0pdwzf8f58pridwhafw5z0p"; depends=[BiocGenerics dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + cellGrowth = derive2 { name="cellGrowth"; version="1.26.1"; sha256="0zmn45i6shr2d6q2dg2p2raz38cy6k8363maq4r4648fx2bmvkb2"; depends=[lattice locfit]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.46.1"; sha256="1fj1gshgphbbqhywwzvm3xrw8zfp19dc8fi6kbzv20ikf3am9fml"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.12.1"; sha256="1qr68f39bqykvjbjp5bw71g41wfp369yc88dqz9wppkzi16vl6z0"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; cellbaseR = derive2 { name="cellbaseR"; version="1.6.0"; sha256="1jw7pwpn8kpx7js8453rwcajwf8fs3l6yc19vxhw0s96a3c3j5bi"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.10.0"; sha256="0hbh2pi76a5jr7nmvwhgxqsrs8sv6k1m7kn0vgvz67hhx59flncr"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellity = derive2 { name="cellity"; version="1.10.1"; sha256="1ifm50ff9q6lwxyi52qzksimnwvd8yddrp7jkidzlykamh5dg05p"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; cellscape = derive2 { name="cellscape"; version="1.6.0"; sha256="062x43n5jq8hwlrlgd1ffgbpnifac79j9dzd35f6phb6vc1g63dl"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; cghMCR = derive2 { name="cghMCR"; version="1.40.0"; sha256="0h2adfwa6afjik7zi6kn8i7gqbn7x2r7rh8kvi8v8c8y08166d3a"; depends=[BiocGenerics CNTools DNAcopy limma]; }; charm = derive2 { name="charm"; version="2.28.0"; sha256="1shf9f9b0dl5fskify0lqnqnr9rk4hk5rnrx7b028m83zphizxs8"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; chimera = derive2 { name="chimera"; version="1.24.0"; sha256="1zkwf6zbg1151br9kafbqs4k4d5h70lbzjgy4x3q5pj3iqwg6j8p"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.8.0"; sha256="0c337msqk0zvqfr611wm0bdrvf7x2yfxb35rza9gn5bv12hlfzmg"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.6.0"; sha256="1piyp3v42lzm40vvzbcfx0afzgklvp3vcf6i071s8dhjwk8hfa0z"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.8.1"; sha256="1nwlbmr99ixh95zwn302c4pknlvc0f7yjq40wm1vcamks5d2l9hy"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.6.1"; sha256="0nm55lfac405spccl9f19p5ij8mdaj6lm7qmaf4xqagsaf5x0pa9"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; chipseq = derive2 { name="chipseq"; version="1.32.0"; sha256="1pp1rm5fs3hlar5x4dl3a3b4gara7qwf81dbvka6r1n78hrf9x1b"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; chopsticks = derive2 { name="chopsticks"; version="1.48.0"; sha256="0r52z0hjaxinw11jzg8cyhdpg2g1027vd5aiijwi6bmipdzw4sfk"; depends=[survival]; }; chroGPS = derive2 { name="chroGPS"; version="2.0.1"; sha256="1bn5s1r927ifhwqifws0wgs7v15fk8922kbm8qdkg5zaqibj5qx7"; depends=[Biobase changepoint cluster DPpackage ellipse GenomicRanges ICSNP IRanges MASS vegan]; }; chromDraw = derive2 { name="chromDraw"; version="2.12.0"; sha256="0qqam9vklg2cwsvcp9fm3l3c4lmjzf2lnxrv5dci16f8q55z88cl"; depends=[GenomicRanges Rcpp]; }; chromPlot = derive2 { name="chromPlot"; version="1.10.0"; sha256="15f7wmak0rp0bfzqsjmz6i8zk5g4axsgk7034qg4jw9hlp0nkd6v"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.4.0"; sha256="0cg0kjcrqxzclg9whydhd7fbpj2hcxrkl66ilk5y22dsz9wnwq62"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.8.0"; sha256="1jpbmh6rjm7484d5blh5ziwn2mq2nkkyyfmwliiyxyjygn5c8bgk"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.4.0"; sha256="1gbnpk8paydd7liwdws47dqlsgb009l87fdnqvhrldym56ya5kpy"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + chromVAR = derive2 { name="chromVAR"; version="1.4.1"; sha256="16q9pmjlaqc7nvaxg9arfsrrnpcyzvz0gb5zq7l3g2jgjp4pfi30"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.8.1"; sha256="0ad8q80r7c2bh4a4qy0n82n0ln6fpwwmabcicpdqlvaiahdnp9ph"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.4.1"; sha256="12c9p8val2hfz41kcgph0ms2vfb8dvh754c5z70kyy4wg9n4d28s"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; cicero = derive2 { name="cicero"; version="1.0.14"; sha256="0n4dl6d5fp989y86lnnhjdlmqcy7qyr5ayb1dp2q05rpa7qkv8cf"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringr tibble VGAM]; }; cisPath = derive2 { name="cisPath"; version="1.22.0"; sha256="07ym4ma35vngdbv8fdqf755kiafgrn02bizn77pfkzvrf7xsz5c7"; depends=[]; }; cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.20.0"; sha256="0lmdrx332p43xw1y3bnq7abr6589rwyirn3kljkzjy8j86v0bgbi"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; @@ -976,68 +976,68 @@ in with self; { coexnet = derive2 { name="coexnet"; version="1.4.0"; sha256="0751781vsr46xs3dpq2n29li1zipzad9qv6xnfdm34v62yaggy94"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; cogena = derive2 { name="cogena"; version="1.16.0"; sha256="12r86h6fzr6wqvf70jjxf02zm72ks577m6qcv60wiss609c0b0dn"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; compEpiTools = derive2 { name="compEpiTools"; version="1.16.0"; sha256="02ygqf2h9bm8vfqjfw0xzd75brcazf1dmhq95l8xqc3gy77cffr6"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.0.2"; sha256="1z0sy4g5p0bagnzqm6j0adx8k0c9gf8a6wz0a84vig182q3wyji2"; depends=[GenomicRanges gtools Homo_sapiens minfi mixOmics SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.18.0"; sha256="1wzhabpw6zbf07100vza1lkgmfzwdqwmk1h70ddb1asbs5s2m4qw"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - condcomp = derive2 { name="condcomp"; version="1.0.0"; sha256="1nv3i1r1alpzww6yz4gnic8jjglx8svidcb66kk3gq4pd9fkwafj"; depends=[cluster ggplot2 ggrepel outliers]; }; - consensus = derive2 { name="consensus"; version="1.0.1"; sha256="1hvs97fz95cpfa3ddymkzh186v4wh1hv2jhn72d8pjzx9nlpm230"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.0.0"; sha256="1chwwa0jqkby6gs8qmw5hpx8wppfllrhzg5cc1z1jy1xm98853fs"; depends=[airway AnnotationDbi Biobase BiocParallel Biostrings dendextend DESeq2 EDASeq edgeR GenomicAlignments GenomicFeatures limma pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + compartmap = derive2 { name="compartmap"; version="1.0.3"; sha256="0p7ww7wgfnnankkjlq9jgqqcw9l9k0k2ynzmgxdqsyndpi9ghmgr"; depends=[GenomicRanges gtools Homo_sapiens minfi mixOmics SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.18.1"; sha256="0833zar5zpgns3rlr6nsfagd1ypp62c2779kzajvsrjm61406mrs"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + condcomp = derive2 { name="condcomp"; version="1.0.1"; sha256="1drp9zicf29alh8cq093ns7asl67zhb12mbi0cjd3n1z4i19919j"; depends=[cluster ggplot2 ggrepel outliers]; }; + consensus = derive2 { name="consensus"; version="1.0.2"; sha256="1z07qrdpm6nf3xpv7g7km6vxmx5glvyc0zgianns9r75cc8fnnw9"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.0.6"; sha256="1wakskzc6bcq0a8inacsd062z5sgaqkk8317pa2jdn8kyfqxgq9z"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings dendextend DESeq2 EDASeq edgeR GenomicAlignments GenomicFeatures limma pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; consensusOV = derive2 { name="consensusOV"; version="1.4.1"; sha256="0bqqbk2mcj1q5bpyv5gykxpjf3c1gszm5irbdhp1hnkvpy5rxdyw"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.10.0"; sha256="1rww42z71x6d7ckjdm6xa4cvvqazbwghq6na3srq5aarp6pyh34w"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.10.0"; sha256="0kacksvq3xf077qjab06s4kwj4kx6dcnnml7pw15vlr8af4vdfx7"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.10.1"; sha256="0wf8s1v8kz69s351xy4c9ji6k1k9xg568lg0b525s4q9wdh87xrl"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; conumee = derive2 { name="conumee"; version="1.16.0"; sha256="095kzjzvwz5l452arkvrmag7mvqsip14xzbnsfk7wzlr5vpk2765"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; convert = derive2 { name="convert"; version="1.58.0"; sha256="1z7f4dxlsgknapvwq7dvkhyaq25ns2i53fp085j5yy89aqv12w12"; depends=[Biobase limma marray]; }; copa = derive2 { name="copa"; version="1.50.0"; sha256="0cl9i2pi0ap9nvhqldsll9vg7k5qlzr0691mp4i7r6qib31xnzpx"; depends=[Biobase]; }; copynumber = derive2 { name="copynumber"; version="1.22.0"; sha256="0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - coseq = derive2 { name="coseq"; version="1.6.0"; sha256="1162l198r8m16liv2zj4zz904s4w3yxj75g6jdba3cdf8c4dgs30"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.16.0"; sha256="1cc6n82zwmzkggi2zgxw3c2h6x6h3wld2bxskkkdf9l4k005bq8v"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - countsimQC = derive2 { name="countsimQC"; version="1.0.0"; sha256="17ggp2lsld7r2lbw4akisg4hvkc1sypyh5i9b105hqpcvy0way1l"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.8.0"; sha256="16y5ys3n5r2zh4z4sp06b1cphr1nvw8didwrlrkvggrp75501mq9"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + coseq = derive2 { name="coseq"; version="1.6.1"; sha256="03qphm9bq7x4h4n970hd0bpi9sqvjdmg5cmlkzfqwpnbd4njlp0m"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.16.1"; sha256="1lk0778j7famza72h8ppmx4pxnkmm6m6vddz0rw7fbnh3af8j9p2"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + countsimQC = derive2 { name="countsimQC"; version="1.0.1"; sha256="115b806867fnznxdgr786vp7gd536xyz4x94v2s2wpaxwyf65jgs"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.8.1"; sha256="197i9lmmq9xj4f9xxf1050blz5ap6nqbkhfpn19594fc88g09dxa"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; covRNA = derive2 { name="covRNA"; version="1.8.0"; sha256="152yhnq13303wkb4p1bqal7qrg2gxwfqsdpgn84m2sz8gm43dxkc"; depends=[ade4 Biobase genefilter]; }; cpvSNP = derive2 { name="cpvSNP"; version="1.14.0"; sha256="0g4b4i001z5s5g570cpay61c8b8274cy35gp09mb3hjmg5r6rcxp"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.28.0"; sha256="1y34dy7xza5gqgh883h563w1ycg5s0dc77sza2skszzflw3qp52z"; depends=[mclust nor1mix preprocessCore quantreg]; }; + cqn = derive2 { name="cqn"; version="1.28.1"; sha256="062887yp5kalz8zv648a19gh1j5v26hbrv6005416r6z83rwj91q"; depends=[mclust nor1mix preprocessCore quantreg]; }; crisprseekplus = derive2 { name="crisprseekplus"; version="1.8.0"; sha256="125fnm1mrx38bb2c6inw5c45ckh8ryapjvxx7227jj86a3hcljk7"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; crlmm = derive2 { name="crlmm"; version="1.40.0"; sha256="1j37ff0pp782isnrzfaw0cac8nxcz09yc4z7xgss78ah3af26nwj"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; crossmeta = derive2 { name="crossmeta"; version="1.8.0"; sha256="01d8vx016bw4qm3c6pwws1g3s2v7xppsj2v9gzdzwazpk4sfyikk"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager ccmap data_table doParallel doRNG DT fdrtool foreach GEOquery ggplot2 limma matrixStats metaMA metap miniUI oligo pander plotly RColorBrewer rdrop2 reshape shiny stringr sva]; }; csaw = derive2 { name="csaw"; version="1.16.1"; sha256="0rbmsikhj60np22j84gxinr354b2i892nqic493jhzziiznl51sl"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; ctc = derive2 { name="ctc"; version="1.56.0"; sha256="0yp7c0abk48jx1wf8n1gawh7dm15idahqc8va24v8cm0bzxgnmh2"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.8.0"; sha256="081pi9dqp2pcwpv8zc2mgqqcw4z2q866c15vxrmhmwiz5bwrlfr4"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + ctsGE = derive2 { name="ctsGE"; version="1.8.1"; sha256="0zwaky1azh7692qz2w64r5f13w1anww2a8wld10238nlnbmyzjrb"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; cummeRbund = derive2 { name="cummeRbund"; version="2.24.0"; sha256="1fl8p63zr1jxif95anhqg56cssi44k5y05g7qxpkf2w3siyv1b91"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customProDB = derive2 { name="customProDB"; version="1.22.0"; sha256="07808bl355gsxgwyd4rqwarrss5rygywh9jn06vavbkgi054z9x5"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + customProDB = derive2 { name="customProDB"; version="1.22.1"; sha256="0wqjkgrjd3m6dx150039q1srfgp2749bfn8awdbmprl9pp4mkxx8"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; cycle = derive2 { name="cycle"; version="1.36.0"; sha256="0kx40mi7dh6k1s3vc32537q8585q8v4applzyw1y2pklap7sxzyl"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.6.0"; sha256="00kbnf34chr6nf882fxjav3cflkra9pynj9z0s78k4rc2n3nl4jk"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytolib = derive2 { name="cytolib"; version="1.4.0"; sha256="1ls3f1x9kcpqyq25kb0hyx70g68b2r3rb34cw490rjq4ff2568dg"; depends=[BH RProtoBufLib]; }; + cydar = derive2 { name="cydar"; version="1.6.1"; sha256="1j3d817xlhhxn4p32cms8br1kbpl34zdx502p70m4jd4sb6kr8p1"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytolib = derive2 { name="cytolib"; version="1.4.1"; sha256="0fl4p0ddbv0ifd4pyyda9ydfk47dg1rs3qd11wwqfc54ydqzcaha"; depends=[BH RProtoBufLib]; }; dSimer = derive2 { name="dSimer"; version="1.8.0"; sha256="0pcggyimicsyx9wkgjxny8byyhb31phcr8xygi6sfkm17r2nxkwy"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; }; daMA = derive2 { name="daMA"; version="1.54.0"; sha256="0mgd90hdq0045bvzkvxfm6vd3i1n8fa0zmwnsyz5kmhavcynbvpj"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.10.0"; sha256="1rra316yfl039gamrvdpd9p9h190m0a6lisqhmrsja2h2fr22iim"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dada2 = derive2 { name="dada2"; version="1.10.1"; sha256="0858c4s7sqb54ida79dh3a6d0fxzh3c4pmxmp3vr0cnfndrlk5r1"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; dagLogo = derive2 { name="dagLogo"; version="1.20.0"; sha256="1h4mhhnmnfqifa1mxk03j1y7w1azai705q95wdji2nvyhi7gkas2"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; - dcGSA = derive2 { name="dcGSA"; version="1.10.0"; sha256="1v3brh473plcysrn1sj9np2vfjcka747xm0myjj15aq3grl2vmwy"; depends=[BiocParallel Matrix]; }; + dcGSA = derive2 { name="dcGSA"; version="1.10.1"; sha256="1vma7gwl9ai8mj7zxc02g203cljcnyri69jgi7xl963pizya7cnj"; depends=[BiocParallel Matrix]; }; ddCt = derive2 { name="ddCt"; version="1.38.0"; sha256="1gfxk55f8cgq9bs7rab01qi9093kmjii4833bxcxjhfx1mgsmgzz"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; ddPCRclust = derive2 { name="ddPCRclust"; version="1.2.0"; sha256="1s9k86l0jc3jkwc2y85ccmn3jlfcwp985xhjfnv43rlfsi181063"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - debrowser = derive2 { name="debrowser"; version="1.10.4"; sha256="1jgp25cph38dmj75hc43npa2s99dcld0rhfi26ajpwld1l69l9bn"; depends=[annotate AnnotationDbi baySeq clusterProfiler colourpicker d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 googleAuthR gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; }; - decontam = derive2 { name="decontam"; version="1.2.0"; sha256="08vvxm5l9x158g2rm2ijmlgia2fq9a1qkx6k1zzvgvzzhzlx7p85"; depends=[ggplot2 reshape2]; }; + debrowser = derive2 { name="debrowser"; version="1.10.9"; sha256="1xdqw7scpzc4mw73f5la7km0yyvzhl5w9kxigpnlypba0npslpby"; depends=[annotate AnnotationDbi clusterProfiler colourpicker d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + decontam = derive2 { name="decontam"; version="1.2.1"; sha256="0zi5nc39xvdrqdikqfvwhi5jly2gqv3z9r4wwbw78ijgwblvd8n1"; depends=[ggplot2 reshape2]; }; deepSNV = derive2 { name="deepSNV"; version="1.28.0"; sha256="0maswzsfv9rw01v9alq9jbifc8lg6g2h65338v9chb05dkj03baj"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; deltaGseg = derive2 { name="deltaGseg"; version="1.22.0"; sha256="02mjlrs3rvlbqdsw9nw03y5ifzkfy1n5r7h4811ghvizy8cdxpqj"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; derfinder = derive2 { name="derfinder"; version="1.16.1"; sha256="1wdig8zfpq1635b83npmram5zwxslgfgv3npswkjjjnbfzngwz2m"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; derfinderHelper = derive2 { name="derfinderHelper"; version="1.16.1"; sha256="1a37q7gkg16wyjznbjgn974kmw0rh2dmknvbf9rpzp9hcibzkcqf"; depends=[IRanges Matrix S4Vectors]; }; derfinderPlot = derive2 { name="derfinderPlot"; version="1.16.1"; sha256="0pa4ycm3f1bim8byy8ygb8z2r7441rwhmbj7y538scihrsk1q03k"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; }; destiny = derive2 { name="destiny"; version="2.12.0"; sha256="1iay17mrhsfmpwl920rh1nip5b6ybva4h6bna0yld04paq5yva67"; depends=[Biobase BiocGenerics ggplot2 ggthemes igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother SummarizedExperiment VIM]; }; - dexus = derive2 { name="dexus"; version="1.22.0"; sha256="1d4z5icv13hnlv6j03q0l02gi769qp2w4ryb8z6880grgrq45s0j"; depends=[BiocGenerics]; }; + dexus = derive2 { name="dexus"; version="1.22.1"; sha256="109sk2nxaqx0jalw06r3ydy6wdbac76j66sh9431b480p6bcgf1r"; depends=[BiocGenerics]; }; diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.64.0"; sha256="00f088phbix7wrcjrpf3n2a2ps102sbc85f4fg5sqwdw6bvchk9c"; depends=[minpack_lm]; }; diffHic = derive2 { name="diffHic"; version="1.14.0"; sha256="1yjsvwwai9jflg743nyksj7krm0f2pdy2y2rwnmd3cpwh73yy6al"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; diffcoexp = derive2 { name="diffcoexp"; version="1.2.0"; sha256="1kkm0mw7q81yls750ky9rvx0n9iljgq8j5p9h08yxpr46jc3j8k0"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.2.0"; sha256="08dwrv6svcdjsz61zk28cximfhwmvpv7a24bvjg77bfpwdmqp3vy"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffcyt = derive2 { name="diffcyt"; version="1.2.8"; sha256="169b6dn6hkx95xklfkhyiblwkrlpzrd4ag660q6kq7a4aii6n202"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; diffloop = derive2 { name="diffloop"; version="1.10.0"; sha256="0fi1vvzfifhdgcnal1axn69dqbgpjqsicjgqw6gj41db50zi1fi6"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; diffuStats = derive2 { name="diffuStats"; version="1.2.0"; sha256="1hg8scxhndgp0r4m5r7rjliirb4371g9d3lqx2h9mgshadwz5h0r"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; diggit = derive2 { name="diggit"; version="1.14.0"; sha256="1kpi1ahwc90mpfwmy6rsf4argf7fss99lr2v0s99aj39m3lwd2dw"; depends=[Biobase ks viper]; }; - discordant = derive2 { name="discordant"; version="1.6.0"; sha256="18nnclwxzcz14402gizk1mlmwq99fzp0h54klykvjzl884baxz0f"; depends=[Biobase biwt gtools MASS]; }; + discordant = derive2 { name="discordant"; version="1.6.1"; sha256="12zh1qm7l7zq310y4n5fimia1jkxm3ia81br0illyna0kx10b9wq"; depends=[Biobase biwt gtools MASS]; }; dks = derive2 { name="dks"; version="1.28.0"; sha256="0md8x07f117clhxmmrqaki5g5y8r13c4yrw8vk6yvcsf9prybdah"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.2.1"; sha256="169qi0bi82hhyhmsb2swssmbx8gwbqyq06gzs3b2l6wfxaqsy2m9"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.10.0"; sha256="1x4pmmx74nk84g0f2lf5a9zr85a390qhs75ysddjsq8b01cijp3j"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + dmrseq = derive2 { name="dmrseq"; version="1.2.2"; sha256="0vmnka9p6kk9q5rbi5kzxvazvzw0k2fkby7ql4rczyfx4prr7bz6"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.10.1"; sha256="14jlrvx6xb6h8x9qg0fm0hb11dk906ja8vfl1wn6wgdrh8fw6brl"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; drawProteins = derive2 { name="drawProteins"; version="1.2.0"; sha256="13zqpghzpqg92i4mlfmvwx1l1mb7swqmyhisqjp546jzs7vixv25"; depends=[dplyr ggplot2 httr readr stringr]; }; dualKS = derive2 { name="dualKS"; version="1.42.0"; sha256="0mn0mjzncd53wq0jwq2gfcj3mcsfl81hgsaxnf1dqjwqnw4jy1y3"; depends=[affy Biobase]; }; dupRadar = derive2 { name="dupRadar"; version="1.12.1"; sha256="1dmkzhdwzw2r0srwi96g0csxcsg2m8xh1446p75byjarvmyzmqh8"; depends=[Rsubread]; }; dyebias = derive2 { name="dyebias"; version="1.42.0"; sha256="1ml85klh9mwxmz8h2yjagx4sl0dnzg4ijk4pa154njznxr8kqccz"; depends=[Biobase marray]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.18.2"; sha256="0vh245ffjsqf6246d6pj09val43mqhhl5rqw3lrd4sx4kp60bd4s"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.18.3"; sha256="12widgs63dynanvnf3flfiygn2z4wyv9hfwrc3x2wd41wvyslpkr"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; ecolitk = derive2 { name="ecolitk"; version="1.54.0"; sha256="0gbw2kdfnyjlq0paqy8hlz8qmaczfa5qx9wzj3ax3vms5v6n58qp"; depends=[Biobase]; }; edge = derive2 { name="edge"; version="2.14.0"; sha256="0gcwnw9c6qc9b207vlchnw59d025jrdm4b7w5iiw721djwwawdzf"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; edgeR = derive2 { name="edgeR"; version="3.24.3"; sha256="15yimsbsxmxhlsfmgw5j7fd8qn08zz4xqxrir1c6n2dc103y22xg"; depends=[limma locfit Rcpp]; }; @@ -1046,7 +1046,7 @@ in with self; { eisa = derive2 { name="eisa"; version="1.34.0"; sha256="1717bpmrr1kmd1a8rqlarhqcrk786vjw55shn5sd8c89f25vspdx"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; enrichplot = derive2 { name="enrichplot"; version="1.2.0"; sha256="0cxqfpy6py4k3z3lnlkiwx89r4ymfpdc4hm25dfpazqgjflz5is7"; depends=[AnnotationDbi cowplot DOSE europepmc ggplot2 ggplotify ggraph ggridges GOSemSim gridExtra igraph purrr RColorBrewer reshape2 UpSetR]; }; ensemblVEP = derive2 { name="ensemblVEP"; version="1.24.0"; sha256="148phm407clbhp87snazan120bh5hcl90xgbhlwyz0a36i4kjfvc"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.6.3"; sha256="0kzdsfk6mdwlp57sw4j2cf7lx5nc67v5j0xr3iag9kzmgikaq1lb"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + ensembldb = derive2 { name="ensembldb"; version="2.6.5"; sha256="19pf66bh3z3hgdzbwwbzi0xbwhkrn1avrsw19kzpxdvp7q0xn9as"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; epiNEM = derive2 { name="epiNEM"; version="1.6.0"; sha256="1pzcajgqsm6mvw8i7aav0918856ghndrdp93831s6zmdkgxzpw2v"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; }; epigenomix = derive2 { name="epigenomix"; version="1.22.0"; sha256="0cyf35fygr3rgkcfqhb9p9xgl1lydqprzhn3m189yqm3xqck41il"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; epivizr = derive2 { name="epivizr"; version="2.12.0"; sha256="0ms29c5vl0nn8p4v1l5falmwc8xb6wa8fjbfwrgpz8dphidp7mnm"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; @@ -1054,9 +1054,9 @@ in with self; { epivizrData = derive2 { name="epivizrData"; version="1.10.0"; sha256="0m7bn9v9j8jsja36x5vj2bs9wg3dw5845r47mw4200j1j4irj9jb"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; epivizrServer = derive2 { name="epivizrServer"; version="1.10.0"; sha256="17h7cghi9md7yzny07jc0749cpwx5jda78vk9g2db0bf6q91qjq6"; depends=[httpuv mime R6 rjson]; }; epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.10.0"; sha256="0jvx2kc0wqq7rzi1a3lv94i33cgcqhdpny4563kgjcz9g3qaggsd"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.16.0"; sha256="1v5lrbrwgp1r21ii2mpb8adn9q14g5m6hqfvdbi0szrisqq6fhi7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.16.1"; sha256="0xf5nfzjp0jbhyvcia0bxj8rwcmd033gxgvrwrlcq2535v27sdz9"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; erma = derive2 { name="erma"; version="0.14.0"; sha256="0hj9iz904rr1y66442lkxjywkw1ydyxxlhmjirawbf09ic5ad4g9"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.4.0"; sha256="1a9pizkjrvdnz09vgxkx6flpavkdpmkfzahyc41wbp805mxdym1r"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + esATAC = derive2 { name="esATAC"; version="1.4.2"; sha256="0ahqpab9n07fj5jzhj4jilc01a19b8xs70f7q9w91j9bwsjc6rp4"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; esetVis = derive2 { name="esetVis"; version="1.8.0"; sha256="0n2b7qkgy0gh9jfxi5mgsr8g41141435maq1yniw9mqa3hddwjjp"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; eudysbiome = derive2 { name="eudysbiome"; version="1.12.0"; sha256="09lhzfhlmrw6f50c6d21lmyfh3k4hwrg6waiv1qjg6iavhnbc2a0"; depends=[Biostrings plyr R_utils Rsamtools]; }; exomeCopy = derive2 { name="exomeCopy"; version="1.28.0"; sha256="1y475ka8lkf3mh4xj0qvgk0nd0gf497dym9bvl5wpss1fqsks6im"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; @@ -1072,36 +1072,36 @@ in with self; { fdrame = derive2 { name="fdrame"; version="1.54.0"; sha256="1srv11bwyjxlvgv5hky4afwn2bhc8kdvra61jc1dn81qaj5vx41a"; depends=[]; }; ffpe = derive2 { name="ffpe"; version="1.26.0"; sha256="1bcpdj978wiwfwfbpvnj622wqq4axh82djn17l5vrm20p2hgm74n"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; fgsea = derive2 { name="fgsea"; version="1.8.0"; sha256="0cxxvlmg340l5l5fz4abbwppiri0ibg4navvq5k3wg511mz8ma2q"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; - flagme = derive2 { name="flagme"; version="1.38.0"; sha256="024ph9iydqq0wnxzbv8df6iyn8gbnzqlkgr8nr181j96y4idk0vs"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flagme = derive2 { name="flagme"; version="1.38.1"; sha256="1llzkq5944kgh32xns67f8bcfvpgia809b1ly1nfhpa2mpfsvyr1"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; flipflop = derive2 { name="flipflop"; version="1.20.0"; sha256="100ia0j4ir61ihriyz36jnxpa9s4ivs35fifs4yzfiysf7lma3al"; depends=[GenomicRanges IRanges Matrix]; }; - flowAI = derive2 { name="flowAI"; version="1.12.1"; sha256="0011p73kf3z9gpq9z4rishdwahbh3k01qh35ivv1jcp9hj8ff32x"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.20.0"; sha256="1l3jaqck84al3aqddbsb5hrbv7x7809h0jb5zhsz3zk4z3r9051s"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.18.0"; sha256="14n5zzbipw2iwkk8f88h4jgwjy20df3pqk6xcwycw158fdgwy5fm"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.16.0"; sha256="0bm80b4mn6lj501dvivrz2jam6vv19an4b2f5dy8f63byln8ncw3"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowAI = derive2 { name="flowAI"; version="1.12.3"; sha256="1n6l6q1vmnh9lbb00bafbi76pq1q5rfjpqlaws2si5ybsp4vwkqa"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.20.1"; sha256="06w9lfsam3mv9gv6qigsjw9vl169kcyaa7vrh2ii138gry20b9qz"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.18.1"; sha256="1fdj5ziyc10fp27jarx18z97vxnf7d5zy2nwbia6x441svrvc534"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.16.1"; sha256="1472c1jdg9zk94pw84nbr8042rh7k7mrdbyjncqcigrx12dhgdh6"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; flowCL = derive2 { name="flowCL"; version="1.20.1"; sha256="013b81ab3pmfb3n4430ihwc2qbgqf3iyyykzmqdhqs8llcrpqvph"; depends=[graph Rgraphviz SPARQL]; }; flowClean = derive2 { name="flowClean"; version="1.20.0"; sha256="0m8n75gkf1dwhs4hyk1jfqvsmb2lymvi0znikb1gi8bkh9224wvk"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.20.0"; sha256="0ljkgyhcwbgq3d45a9cwahgq1zpycl5d3sl0w4wqwlf8dwfml0s6"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; - flowCore = derive2 { name="flowCore"; version="1.48.0"; sha256="16mh3xlrcxkrqvhv3pry325jzsz97yg84ya8rpvd2lvlpqrz6k3h"; depends=[BH Biobase BiocGenerics corpcor graph MASS matrixStats Rcpp rrcov]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.18.0"; sha256="065dgb3w7ll6sqaji93vdhva9zhx64375pgk7ip4rpc3i4aa2dyx"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.16.0"; sha256="19db67h85c02iqwc9fkln9f50b1jisq6qd98g947rf5a7hfifk13"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.40.0"; sha256="0i8kyvsrb3mrhb36mvj2a62clw4avrbchmr5k3byxndd63x67xwr"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowFit = derive2 { name="flowFit"; version="1.20.0"; sha256="06kdrm4wi3qw8ikkx18j1ss9asl9h62g5p4rw3a8i5jrxpjzwbcm"; depends=[flowCore flowViz gplots kza minpack_lm]; }; - flowMap = derive2 { name="flowMap"; version="1.20.0"; sha256="1lfdia0s2spdxgkqfpwbhvk2xdwsgax23zjzp594f0b4k7rphpmn"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.18.0"; sha256="1gc54jy9kdhrya9kmhilqwvrl7l42q2hq6iczxy6kl872hd984l9"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.42.0"; sha256="03zli85xjr7761ib476lza6il48fh1nmnraqsncc3w9l3xayhv7m"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.30.0"; sha256="13ds10b8mfarrnw3xqw66pm0rjzqvd7cmg8b1ayik68cp28kz6dw"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.28.0"; sha256="0g0xaafr351w1ij1nic14kv7rpk9qlhgx8ibiqivjcg0ygj7nls5"; depends=[]; }; + flowClust = derive2 { name="flowClust"; version="3.20.1"; sha256="1wk2hwc9fbhjqw0cic3mgh5xg82nwg0m6548b5cvn5f8ywxs2f4m"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; + flowCore = derive2 { name="flowCore"; version="1.48.1"; sha256="04cmydy10i1zrd293cjam7v8i1habm27m5ggpp52jcsy7db9gg7p"; depends=[BH Biobase BiocGenerics corpcor graph MASS matrixStats Rcpp rrcov]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.18.1"; sha256="0lnfn2xxd3zbr1jn1vdd6b6yaljddn525fsb7g0i7nsl3py89nfy"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.16.1"; sha256="0kmy3k54aghv1vkdmply5pwyr8dxfipa1qi1b7xrqa7zbwa8dxq4"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.40.1"; sha256="1dq634pw4d89gmqw71nzb2paqlzkm2q53xv9rbl4rpglxb3325gb"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowFit = derive2 { name="flowFit"; version="1.20.1"; sha256="0f03p0jki13lip694ahd0ym3ixlmj60vkspkzcwq88mpkvmj03jn"; depends=[flowCore flowViz gplots kza minpack_lm]; }; + flowMap = derive2 { name="flowMap"; version="1.20.1"; sha256="0bsy52jhgj81xd20ycdz35n70k71c40hx5lm25gh5v6sxh5598qw"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.18.1"; sha256="03qkisbfzpkz6a4l91gg8biyk5apc2cjqrvilrf9yawp2gypff62"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.42.1"; sha256="1jxhga0wlgn69h4mplzb140grxaxxb0psjgnr9jkcm9c6d6mh9qp"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.30.1"; sha256="1dn6wxaix56r3fw273prbajc84h1k1b03q6wh0pfhy0gr6qk8wgw"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.28.1"; sha256="08g8bnb6h9gc34qx511gd5r9wrfxd6wr1wfzgazswc3idg5pqli6"; depends=[]; }; flowPloidy = derive2 { name="flowPloidy"; version="1.8.0"; sha256="0s2d541id8mf3igidn5n7v6d3g21yaskzc7kx9zvywx9391sd9qx"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.30.0"; sha256="1i9yniihhc3qfyk897cf148mpj718fzicgfrz25825g6f5p1f7cd"; depends=[]; }; - flowQB = derive2 { name="flowQB"; version="2.10.0"; sha256="00i8kdwkz1h79d1r8iv7mipiw2wcf3vzfgwyyqy4dimzppkmpg3x"; depends=[extremevalues flowCore]; }; - flowStats = derive2 { name="flowStats"; version="3.40.0"; sha256="0d2q4d9aih4rgjrn0cyfawsli1473rwh315yx20hb8dhi68gx8c7"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer]; }; - flowTime = derive2 { name="flowTime"; version="1.6.0"; sha256="1jjjg1a9drpx726rv6gxiniczi09an24pl3bjspaizyggy9nvdlw"; depends=[flowCore plyr]; }; - flowTrans = derive2 { name="flowTrans"; version="1.34.0"; sha256="11s6f3cfqj1yn5z0r09xpnl9n6l3kiarsrxsa58zad0792sq8dfw"; depends=[flowClust flowCore flowViz]; }; - flowType = derive2 { name="flowType"; version="2.20.0"; sha256="14rs8i21gn0fa2viwnal1c2xagjpvmm0nbiqnhilqz5g6cpr9z1j"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; - flowUtils = derive2 { name="flowUtils"; version="1.46.0"; sha256="10y809p3figzp1vn92jmb0zwql9bmiicxmh3bwn4wf69xslcsvqg"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.14.0"; sha256="1261xy1q1gbr9yfm47bgahs32rnji2c2apyisgbg1c1ic7kcq8fx"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.46.0"; sha256="050anps4hzi107cgcnr98hj2ac86cf7gm84qjfsghq26yqgand3a"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="3.30.1"; sha256="06dky6dl6ykzab1fi2g6a7060f2rhc5gwncq7spx57nrcpmx0pdl"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; + flowPlots = derive2 { name="flowPlots"; version="1.30.1"; sha256="1ygbd62kyqpmlln55m65n0jb8k7kdqxpihwlrp5yickxv7g99zx6"; depends=[]; }; + flowQB = derive2 { name="flowQB"; version="2.10.1"; sha256="0cpp6pn1w2ccixxclx6cmv7hzsqc0bcsbwyy1vz2lvwrrmvsk8z3"; depends=[extremevalues flowCore]; }; + flowStats = derive2 { name="flowStats"; version="3.40.1"; sha256="0krj1x5jpzl6ravqmb7ccgmdf246627sd32zp8sblb1fz9nr0pzp"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer]; }; + flowTime = derive2 { name="flowTime"; version="1.6.1"; sha256="1an5cx6dbl6y7llss1w27v5csz7pvfng7490ig3fynnkfldl8n52"; depends=[flowCore plyr]; }; + flowTrans = derive2 { name="flowTrans"; version="1.34.1"; sha256="0wav5y4gzbciyvv9php7lkhqr5h1gwk42qx0665df3zcbwxkahcb"; depends=[flowClust flowCore flowViz]; }; + flowType = derive2 { name="flowType"; version="2.20.1"; sha256="0dpbkcf7rh1sf8hi5mmxjq6nd72w8xhjcxf2lzfn0iyxvdfb76w3"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; + flowUtils = derive2 { name="flowUtils"; version="1.46.1"; sha256="0vk8xq623p6pfp92fllza2vyxm4b92w98dc6v3d9ik88nyp1ppzz"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.14.1"; sha256="06kprjxrjywvc1w5ic1753npz5p4k8fhqx6361wqzzzhzihj6gy6"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.46.1"; sha256="0php2rng4da7jk98rvmkfwm994qnqkrlqmqpqy4kl19w3gsc00i1"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="3.30.2"; sha256="19ifpwpk9rmmfm647zm419k50hna8ib0ad75l04xbggdm6s3vm41"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; flowcatchR = derive2 { name="flowcatchR"; version="1.16.0"; sha256="0cwfm8d3s7nvkfm0zfx84mcamyszc8cwwy7b9rn9m27rj3q80f1z"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; fmcsR = derive2 { name="fmcsR"; version="1.24.0"; sha256="0dl39066y0s391hczpi3482dwwpsp1767f6n881n00sv7pb4znxy"; depends=[BiocGenerics ChemmineR RUnit]; }; focalCall = derive2 { name="focalCall"; version="1.16.0"; sha256="06x6d5j17wabdy03r4h9clmdp69wbxgzpsvalrmg8l4yyj9z7lrc"; depends=[CGHcall]; }; @@ -1110,11 +1110,11 @@ in with self; { funtooNorm = derive2 { name="funtooNorm"; version="1.6.0"; sha256="0s4vafjskzyc6hf616cbi7g9prf6lh7fmi7zywr97pr11390n7qg"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; gCMAP = derive2 { name="gCMAP"; version="1.26.0"; sha256="1ql9nxlj4wgc22g699lxsn57iam7k3w33v3cinhywsy9zfswawh9"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.22.0"; sha256="0jvn3h3hn2b8av0c901gbidhrkgkhhm4027qymn5dhg4xsg2dayg"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="1.10.0"; sha256="1y91pan4wdj2xfwgkpvbaispl98wxp97f7vm9n8rmk8f58w10s3m"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="1.10.1"; sha256="148ggbbhvg0ja55zs1vlcjpjgcc50mgfq58ixfi7pifiaszzwh6s"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; gQTLBase = derive2 { name="gQTLBase"; version="1.14.0"; sha256="1lbk1m1mkvbk30flk5pf3pcrnm2s0sj5r48kbjgad39dsvd8zgqx"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; gQTLstats = derive2 { name="gQTLstats"; version="1.14.0"; sha256="1sg9kw59dlayj7qxql9pd93d4hmml504sa3kkfpzfh3xri7m5pxf"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr erma ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggbeeswarm ggplot2 gQTLBase HardyWeinberg Homo_sapiens IRanges limma mgcv plotly reshape2 S4Vectors shiny snpStats SummarizedExperiment VariantAnnotation]; }; - gaga = derive2 { name="gaga"; version="2.28.0"; sha256="13kqrqc8fskr53mhhg55k1sld03h94wk1fq0aj8jkl3xfjr0i6fi"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.32.0"; sha256="07b098wvryxf0zd423nk6h52s3gyngwjcx2vplqybpbpgl8h2931"; depends=[AnnotationDbi graph KEGGREST]; }; + gaga = derive2 { name="gaga"; version="2.28.1"; sha256="017ga7m85qzxvfvg13gilsikc06vr8ggfp07aw36gdn9q8by76d5"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.32.1"; sha256="02g796sb1800ff0f1mq9f2m5wwzpf8pnfzajs49i68dhq2hm01a8"; depends=[AnnotationDbi graph KEGGREST]; }; gaggle = derive2 { name="gaggle"; version="1.50.0"; sha256="1yj10aahr1pmn7kspiplczalr1awmybr320y49cadh17l3p3i224"; depends=[graph rJava RUnit]; }; gaia = derive2 { name="gaia"; version="2.26.0"; sha256="1a3lmazx5dlb484llfvwk6b4g89r3dcbmkjz7wah44kpyp0k5lrv"; depends=[]; }; garfield = derive2 { name="garfield"; version="1.10.0"; sha256="1hcb4dvhir20ldfr7zrd0b3xcdpkafb0sc3gwns4651a9hs2cx8j"; depends=[]; }; @@ -1123,7 +1123,7 @@ in with self; { gcrma = derive2 { name="gcrma"; version="2.54.0"; sha256="1v5fi98gdmj002ryq0rgsg2l4x3m3w5pz4h3bx4v8lk15azafgim"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; gdsfmt = derive2 { name="gdsfmt"; version="1.18.1"; sha256="1axbs23armc8r4nmfnhv6ripxzh551lgwd0580nknif4jj1a98ga"; depends=[]; }; geNetClassifier = derive2 { name="geNetClassifier"; version="1.22.0"; sha256="079v4jrscq93kapv4676d4zsy3rk7j547pn9hsj7fi0sypv9sg4h"; depends=[Biobase e1071 EBarrays minet]; }; - geecc = derive2 { name="geecc"; version="1.16.0"; sha256="1lmc52532ibdzhwkyrx20rnjd11fqp1gwy7i9d9a5zbr17b0y91q"; depends=[gplots hypergea MASS Rcpp]; }; + geecc = derive2 { name="geecc"; version="1.16.1"; sha256="0axbina6xvv9l8ymswlxa989kzif2cy5njfis8g6pfnx0dfmnrmp"; depends=[gplots hypergea MASS Rcpp]; }; genArise = derive2 { name="genArise"; version="1.58.0"; sha256="0drncw83b214w8fk11z3dilshd9p9z4irb23gbvkq67xm62nbkxn"; depends=[locfit tkrplot xtable]; }; genbankr = derive2 { name="genbankr"; version="1.10.0"; sha256="18pw66ilh7mnlar94885k182hay05vana7pjki38bb2jbifk4m2f"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; geneAttribution = derive2 { name="geneAttribution"; version="1.8.0"; sha256="1wngaq654gzp2llk8zk8z3gmnpb3lwx4l6sfi9dn8n551q6lbbcg"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; @@ -1143,24 +1143,24 @@ in with self; { genotypeeval = derive2 { name="genotypeeval"; version="1.14.0"; sha256="0xi0n87g5qh1yswr3whv8wvmxswd66j6g8662qsfgy3cs69hxl3m"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; genphen = derive2 { name="genphen"; version="1.10.0"; sha256="184iys5x8pwikrvkn7wh4fcclkcnx5s0pk0s3vhwq6kvi6bhgi8w"; depends=[Biostrings doParallel e1071 foreach ranger rstan]; }; gep2pep = derive2 { name="gep2pep"; version="1.2.0"; sha256="1sxkps92hf85svngd5511j3sbwn8904nn9ijn168v7xzzmld3z5y"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.14.0"; sha256="0qknix99j5q45l3yamczdv32w1mnqwxv4ndhlcjw1xck0bzvy4p9"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + gespeR = derive2 { name="gespeR"; version="1.14.1"; sha256="1d8jvwnmnd27860n9qk5500mi73kdnvzwkfsqjp0xzz6ji5l9khs"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; ggbio = derive2 { name="ggbio"; version="1.30.0"; sha256="0wq49qqzkcn8s19xgaxf2s1j1a563d7pbhhvris6fhxfdjsz4934"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.10.0"; sha256="1p1hcd8a779902aq12438qyj708vf4vnnmlf61ishs7blrwb8qq7"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer rlang scales]; }; - ggtree = derive2 { name="ggtree"; version="1.14.4"; sha256="0ysw7yw5s3lbfr3pyaqg3xcvfbslcdyja5mk1yq78sqwyss5vs8y"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; }; + ggcyto = derive2 { name="ggcyto"; version="1.10.2"; sha256="0nhwrsc4drswpyz6w3v3h5q0cwzi92a0kzx47n3x6drdjdrv4w21"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer rlang scales]; }; + ggtree = derive2 { name="ggtree"; version="1.14.6"; sha256="0jp4djkjvhvidp8ic44wq527rjzsh5awqfll2g9bdlypmjs21494"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; }; girafe = derive2 { name="girafe"; version="1.34.0"; sha256="13hk8rfldbwadqhy5mqcdzggili3ib6whwqcf85pl72x627iif5j"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; glmSparseNet = derive2 { name="glmSparseNet"; version="1.0.0"; sha256="0aqcnqmnl977yc7lp9gb8a4hqaxdh2pjw2lhiw3vly933xzd78sc"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet loose_rock Matrix MultiAssayExperiment readr reshape2 rlang sparsebn sparsebnUtils STRINGdb stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.10.0"; sha256="11vnfj4nkfwijsi6ax0algimi58zs3ixnb98b7ijrqi09l095rc1"; depends=[]; }; + globalSeq = derive2 { name="globalSeq"; version="1.10.1"; sha256="1vvhqn04b0kl0xdyp7ga4dlbvh15gw0f5nr8ssw7rr1flzcp1jik"; depends=[]; }; globaltest = derive2 { name="globaltest"; version="5.36.0"; sha256="16v8rn25n87kk892c3yvmqdv03csqdrzp7krcr8w2y0wznys2cqn"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.24.1"; sha256="19b55ng508n5iwws67n0z6mxnnwmmnq6cy2wvvh8gp0f94n8bzf9"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmapR = derive2 { name="gmapR"; version="1.24.2"; sha256="0j4k5r2lx0kng2826vi9535pc7lflgqvwsqcq7bkbrzmc287k465"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; goProfiles = derive2 { name="goProfiles"; version="1.44.0"; sha256="0rpks421g0rbdcfnkfqpd5l22cysdcfljnmngq9pbgh04wpwi8f1"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; goSTAG = derive2 { name="goSTAG"; version="1.6.1"; sha256="0ib9a1v9zblysmk7a6wrg6cj1q6is2s9mranb28nn2r067kfx77l"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; goTools = derive2 { name="goTools"; version="1.56.0"; sha256="0w2mb8g5fnn7vm35cqw437f2sdiba4c72ay1n7frh0z1xc7hqc3r"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.34.0"; sha256="1401x0jn5f8hqc12r3gd1wammp1nxir3is1k5ldd03ln97x00i7a"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + goseq = derive2 { name="goseq"; version="1.34.1"; sha256="1j87j98cajcjqabv6rb6zmcqxsqxxhbb3w60w1iink4rhsh8m3mn"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; gpart = derive2 { name="gpart"; version="1.0.0"; sha256="0dgv8g5vxzab4ax1aqvs7bjrd52i299jvxrdfxrswxdrsl7jj0ad"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; gpls = derive2 { name="gpls"; version="1.54.0"; sha256="14sffq2h6hqlzaq1nzw34rkg7nnshfp6k5r3wyvavq6k25384jr0"; depends=[]; }; gprege = derive2 { name="gprege"; version="1.26.0"; sha256="0b2zrxggljfgr8w2ns7h80ymqrvfi8kaliy32k2najm089kpv8dy"; depends=[gptk]; }; graph = derive2 { name="graph"; version="1.60.0"; sha256="1kgnsm6f0vmb9qbkmmrnvxbwqc0gar17dq5gv1v10hrksw6mh64i"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.28.1"; sha256="04mw63c9qw0p3bf4zzv5mmsdrxzm0066pb03r7rpgishn3cyj7kb"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; + graphite = derive2 { name="graphite"; version="1.28.2"; sha256="0jdi5s7ffl7snwxrbk1nj8vb4db5wv328ipypyl8ddrzk6rljcy5"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; groHMM = derive2 { name="groHMM"; version="1.16.0"; sha256="1ph92fv44b90v7mk4b1mjvv0dlrhl8ba01klxbnd0vs4qn9zxplh"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; gsean = derive2 { name="gsean"; version="1.2.0"; sha256="01f3wlv2gr28hd9cmyaf7z7pd08hf7i3849blxmy04b9k9a35md3"; depends=[fgsea PPInfer]; }; gtrellis = derive2 { name="gtrellis"; version="1.14.0"; sha256="17c43vs6m6hj90x5is0pbcpcv59gg9z98c47hnvlypgcqch38h6v"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; @@ -1174,34 +1174,34 @@ in with self; { hicrep = derive2 { name="hicrep"; version="1.6.0"; sha256="0j92hg6qk9rd84lkl63zirwyydvnsrsgwibyv8ndrap4nw9hiswv"; depends=[]; }; hierGWAS = derive2 { name="hierGWAS"; version="1.12.0"; sha256="0fsp5zyaz7kdgyyfnzvzcvsscxh69skvkn245sw41svq3gyswpcl"; depends=[fastcluster fmsb glmnet]; }; hierinf = derive2 { name="hierinf"; version="1.0.0"; sha256="0p0kxqap5qdrfgh6jcn94c7hdk9k3xp178wz5ip1c3x3pqj30ndh"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="1.3.1"; sha256="10j4152vikdx6jfnspgd7sgw28k4jzrhf8qb3avsjm45677j2ckb"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hipathia = derive2 { name="hipathia"; version="1.4.1"; sha256="1hnq2rl2g1an7q2hxc3s7sn1hynhapmb5qjj4ishcpv0irygb8ha"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; hmdbQuery = derive2 { name="hmdbQuery"; version="1.2.0"; sha256="0wliaddym62p9gf57y349q854jsng5chh5jd0gh3j3pdg5nlb7c0"; depends=[S4Vectors XML]; }; hopach = derive2 { name="hopach"; version="2.42.0"; sha256="0mrc9yw1gwk6nx0bdcckphd5n13si3yvf3brn5yyg6xnl1b019c3"; depends=[Biobase BiocGenerics cluster]; }; hpar = derive2 { name="hpar"; version="1.24.0"; sha256="1pm3k8apgynmdzv2d0chca3b636kcai3b1x861fyv1m3xs6msgxn"; depends=[]; }; htSeqTools = derive2 { name="htSeqTools"; version="1.30.0"; sha256="11lywvkgl07fd2f82j00lw8zbvdg4g2aaa2w670vhh24v5w38xng"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; hyperdraw = derive2 { name="hyperdraw"; version="1.34.0"; sha256="0widxxs8rk9xmpzwj4pmxg5px2ym2g2psqiwnqnhvd0pqhfpssvr"; depends=[graph hypergraph Rgraphviz]; }; hypergraph = derive2 { name="hypergraph"; version="1.54.0"; sha256="1qhn3y3wvh2azbcabi95zbpdlv0y1fhrw3l8w7qgi78asiq5b3jp"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.26.0"; sha256="138ahl3l2vghnbm7ck9yg6yr8yilrnv12xi8j8bqzyxavaszf122"; depends=[]; }; + iASeq = derive2 { name="iASeq"; version="1.26.1"; sha256="1qnpdsqpgi9bp39vyhdhjajdq552gd0q5pb23p274w3zr9sw6v6h"; depends=[]; }; iBBiG = derive2 { name="iBBiG"; version="1.26.0"; sha256="02pw4v01ck6kfpylbymy46wsavcpf1q9xmrz1fywb1z5rday2kdb"; depends=[ade4 biclust xtable]; }; iBMQ = derive2 { name="iBMQ"; version="1.22.0"; sha256="08lw0a4c9gp3vx6ggrxmsr2lgikfzw5gdw3ri08f89cqqmb6cazi"; depends=[Biobase ggplot2]; }; iCARE = derive2 { name="iCARE"; version="1.10.3"; sha256="1m58fprg00ns55cgbd63dn9276hx3351r69cwskrrsl68kza3i2r"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.2.0"; sha256="1pmqz15j665qd9yyif6kjkpv26xaw6d9cfw17alnhvsnhwfs1xpb"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCNV = derive2 { name="iCNV"; version="1.2.1"; sha256="10kqd00sfq1v6lyydif7a8nwc4xg9z3db70p1c3s4y2iyia2kzdk"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; iCOBRA = derive2 { name="iCOBRA"; version="1.10.0"; sha256="0i1swrm31g0zffi5pm48bfvdfqpd32d0zdchkbyipz96al46jnld"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; iCheck = derive2 { name="iCheck"; version="1.12.0"; sha256="0wsgplym9kf1v7lvnnkxxgs9d9ahhb456vs9kgxydik94hyxpiz4"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; iChip = derive2 { name="iChip"; version="1.36.0"; sha256="1ak11v8xywgqximfy99g3d2lyci7pj0r4p1yy6g77j8bwf1frz5d"; depends=[limma]; }; iClusterPlus = derive2 { name="iClusterPlus"; version="1.18.0"; sha256="08w6f1ad1mc05ws7jdq1j6sn3rflbdp1q5nii09a6qjx83micr4n"; depends=[]; }; iGC = derive2 { name="iGC"; version="1.12.0"; sha256="1m3mhxkvxsswmk6sqd78brx94pwyzc3z71kv2dzxj1409g6s1h25"; depends=[data_table plyr]; }; iPAC = derive2 { name="iPAC"; version="1.26.0"; sha256="01s5sgkid33jhzkjk7mdkdn48asp4ibj8b9r5cx5f3ngmkbfpdql"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSEE = derive2 { name="iSEE"; version="1.2.0"; sha256="1fhhsy07gy73yfc0pbx3jv92a8fzfmg38fzywryzga997wqyip2h"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEE = derive2 { name="iSEE"; version="1.2.1"; sha256="1vg6z0kjd45zj8zi392fzmrxwnylxy8ggp9d83qcanwzkdi743va"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; iSeq = derive2 { name="iSeq"; version="1.34.0"; sha256="0hlslyypijb4w9m01xkn6r8svs0kkp4nbv4xdz844pvyyxcn4afc"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.0.0"; sha256="1v6jx309m0ar4pb1zvh2wlipqhfbcmb1028c2syg7avbv41h4zbp"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + iasva = derive2 { name="iasva"; version="1.0.1"; sha256="1cmbsa75fhs5zxjlfijwknk5s5i6w9q7r7xn34m3hz0y9asg62fc"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; ibh = derive2 { name="ibh"; version="1.30.0"; sha256="0wghj4qbnfg7zy1pbz580x9m1wszlhiyc34s9sd4q5spviz8dxh5"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.0.0"; sha256="01scc2vcfnifqrdk9bngw47ifpq87dhj659h1ndrwqqxv2drb67r"; depends=[BiocGenerics BiocParallel Biostrings csaw edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.6.0"; sha256="173nlxmilmaz792jz3nv7dm98icl38gbidmcwbj7zhsl5q7wd8z5"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + icetea = derive2 { name="icetea"; version="1.0.1"; sha256="11l0m6r6rrw8g4r7zabf6sy894sa9bqcsr6x7kbnk3hdmr3lcwfh"; depends=[BiocGenerics BiocParallel Biostrings csaw edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.6.1"; sha256="0d3rym7lfnaqpr7dlcxq2mf0p2wh45y9glx5m3isf5z352y81bd9"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; idiogram = derive2 { name="idiogram"; version="1.58.0"; sha256="0m4p1ar2z7wj8zk24kiazwr8i55b0b6i7j03skqzcgy5jdv3jzyp"; depends=[annotate Biobase plotrix]; }; igvR = derive2 { name="igvR"; version="1.2.0"; sha256="1g5q877hpwckf3m2qvgysvwa9ggxg99mbmk0vkqsyamqxh74pwx6"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; }; illuminaio = derive2 { name="illuminaio"; version="0.24.0"; sha256="1rdp9b4xlv91yzba7pd7k50s3nkljfxmdmyz5jl0j8ybhmpl6rns"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.32.0"; sha256="0d0wc48vr4p8yqzb68xrfxi5zlimzmss1da2apv1cbrcavzs2392"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + imageHTS = derive2 { name="imageHTS"; version="1.32.1"; sha256="10syni3cfl1n4p7gkskkcd0vrfkzg95kjrr16hbvypndrfp3wmhg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; immunoClust = derive2 { name="immunoClust"; version="1.14.1"; sha256="0ncb6szwd5ghh5x3bi9d3dqmfgyjawhflsc1rxbmyf3qs67796my"; depends=[flowCore lattice]; }; impute = derive2 { name="impute"; version="1.56.0"; sha256="08z0pj1dz5iq967nwj67qyka7ir7m5an2ggv7bsrlz3apzfsla33"; depends=[]; }; intansv = derive2 { name="intansv"; version="1.22.0"; sha256="1gj6sxh84v5g7nriskyg7jx0z3kqmicymv53651cgr66wc86z2lm"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; @@ -1209,8 +1209,8 @@ in with self; { interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.20.0"; sha256="04xz3dkwan2s5ic1mwkdfnggm0l41mgqfagx160bcsrpkw6z7ark"; depends=[BiocGenerics shiny]; }; inveRsion = derive2 { name="inveRsion"; version="1.30.0"; sha256="0qaxl6arlx2zki5gkic52b575ickh7mzwls70xyqj8342hyxhi30"; depends=[haplo_stats]; }; ipdDb = derive2 { name="ipdDb"; version="1.0.0"; sha256="049hzzj2x7wwd4ybjbq6vrc4kg21fcx7yxj501lyyp1qddvvrmvs"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.28.0"; sha256="0bs7xskx8q366sij7n2ga2spryzpknsdfh2xfv70gvb6ysqknksm"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.10.0"; sha256="0a2yjkgnfkw0vr4n7n8d8v36zdcwkxdc5ldgrl6fz25y5hrpwiyg"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; }; + isobar = derive2 { name="isobar"; version="1.28.1"; sha256="0zh6qj9jjwp1wgwg9n47g01xxwdi8janiv3iy89a3jc62mm1ddpc"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.10.1"; sha256="18fhm2w1j92sj7pw6hhi58slv4sni09mf10s9ihm2xphv10qysym"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; }; iterClust = derive2 { name="iterClust"; version="1.4.0"; sha256="12nm79j67ls330lnld1wf4xdjxnfi15yjd8x5ibppv9ccsq6vlrn"; depends=[Biobase cluster]; }; iterativeBMA = derive2 { name="iterativeBMA"; version="1.40.0"; sha256="0x3fk3faslrcc24wrchdy57ip2nq49dr0l5yf99ihr1gnkfzjrsr"; depends=[Biobase BMA leaps]; }; iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.40.0"; sha256="1k6pivwa69n1ppwvfdr90nlm7lw2kji2p1s6s35dc9463a6qyh7r"; depends=[BMA leaps survival]; }; @@ -1239,7 +1239,7 @@ in with self; { lumi = derive2 { name="lumi"; version="2.34.0"; sha256="1fpmjpgcy5n0hx9whn9m3jhjmciqq0l59nvy5addbq0a4wnjhx8q"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; mAPKL = derive2 { name="mAPKL"; version="1.12.0"; sha256="1bp8xpcrz7d76lazp72p25rzp3gcmr2z4cyhcgbg678gpsp61lj9"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; mBPCR = derive2 { name="mBPCR"; version="1.36.0"; sha256="0vsb87518x770li85jdkns1qsabmixsn8mvh96hamr0adcwvgzrz"; depends=[Biobase oligoClasses SNPchip]; }; - mCSEA = derive2 { name="mCSEA"; version="1.2.0"; sha256="0vc7jbx43493znbvy9576sk0qfc5lac92bal3ihyvl5bz4vr046b"; depends=[fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + mCSEA = derive2 { name="mCSEA"; version="1.2.1"; sha256="10qa9xvqnkgh8clddp3ifj31xgykilhnn4xqhfmnrk3k2l9dsgzj"; depends=[fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; maCorrPlot = derive2 { name="maCorrPlot"; version="1.52.0"; sha256="11gg32sj2iyd3l7hxlqlhgd8adcgsfdz7n5lypsz1d7d3y760f7y"; depends=[lattice]; }; maPredictDSC = derive2 { name="maPredictDSC"; version="1.20.0"; sha256="00m792cgx3v6gp81axpqf48bdxkl8l2gnl6fvsx3xbsk4akm33p2"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; maSigPro = derive2 { name="maSigPro"; version="1.54.0"; sha256="15bndkrwafj1vg2ik0s5003dzs65ibyhgz79ya5gry0b5h365qri"; depends=[Biobase MASS mclust venn]; }; @@ -1249,7 +1249,7 @@ in with self; { maftools = derive2 { name="maftools"; version="1.8.0"; sha256="1l7jnwb54zwag0xzz1j08zk5mwyghza5w27v1annfyxbfa3hd9xd"; depends=[Biostrings BSgenome cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson survival wordcloud]; }; maigesPack = derive2 { name="maigesPack"; version="1.46.0"; sha256="07rd63lifw4vmf2cxb7lwmnwpynv39ac0h2dd97dvjwqzj6kq1cs"; depends=[convert graph limma marray]; }; makecdfenv = derive2 { name="makecdfenv"; version="1.58.0"; sha256="0djhh5kj4ymxjk1qhpx8kcy8cjzx3syx6na7v52aqhys0zssdbip"; depends=[affy affyio Biobase zlibbioc]; }; - manta = derive2 { name="manta"; version="1.28.0"; sha256="1hgy4vrklxmnxsggaby8r793953ih4k6asdcxdyxwjmikcghj1hc"; depends=[caroline edgeR Hmisc]; }; + manta = derive2 { name="manta"; version="1.28.1"; sha256="0lzwh3yi41hrqm25ili464n1cl22q7v00kgl20b412zfyx4rn7y5"; depends=[caroline edgeR Hmisc]; }; mapscape = derive2 { name="mapscape"; version="1.6.0"; sha256="148b7g4qiczc215x9nrggjqzjbsd4wxwydjxsfbsmy51db7n4gp2"; depends=[base64enc htmlwidgets jsonlite stringr]; }; marray = derive2 { name="marray"; version="1.60.0"; sha256="1sh7l3c28x6zhdv99c9x05ii2yxmh9alkazp98kdi4fdb23rlzky"; depends=[limma]; }; martini = derive2 { name="martini"; version="1.2.0"; sha256="072k0wphk4nl096wvbfrn0v1sgryg74ay6r9jqci7pzmninc0kci"; depends=[igraph Matrix Rcpp RcppEigen Rgin S4Vectors snpStats]; }; @@ -1260,25 +1260,25 @@ in with self; { matter = derive2 { name="matter"; version="1.8.3"; sha256="03hsgl0k48j458aa20s4xxrpslypllg74qf6yr9irx9h939hszwm"; depends=[biglm BiocGenerics digest irlba]; }; mcaGUI = derive2 { name="mcaGUI"; version="1.30.0"; sha256="0id5zlpk8zdim8gmmh61dabirg52kmbi63dx316838idk4i06a5h"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; mdgsa = derive2 { name="mdgsa"; version="1.14.0"; sha256="01yh036hy3jn1q76bz2whfdf2qjs5xra7570rf25fff824cbszdk"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; - mdp = derive2 { name="mdp"; version="1.2.0"; sha256="0mvpziy476wq9yniwyvpmbcmhsvgafhc4k6c5hi8k85rkaczip4q"; depends=[ggplot2]; }; + mdp = derive2 { name="mdp"; version="1.2.1"; sha256="1rmkzjd2f7f1dnla8rlywhwih5lpi742br1gsrrl5i61lgy61fbl"; depends=[ggplot2 gridExtra]; }; mdqc = derive2 { name="mdqc"; version="1.44.0"; sha256="0w4455xqkwwz8bhac36sxkqziq9pacp8n81zc3b1wwcwf95m2r6q"; depends=[cluster MASS]; }; meshes = derive2 { name="meshes"; version="1.8.0"; sha256="0lc0mmvmrfzirqc0ydhzwdpq7d6rb8ffi8ka52qs6wc6nfqb6qg8"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; }; meshr = derive2 { name="meshr"; version="1.18.0"; sha256="12rwfqjpa9bzgrm3yqfz7h8v22icps8dr709lmp7k1jx9jbzp3gs"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; }; messina = derive2 { name="messina"; version="1.18.0"; sha256="1dhl6l5ids2ffsfbc9jk36ihrpsd161w9c1j93jvdvpa6130jl6f"; depends=[foreach ggplot2 plyr Rcpp survival]; }; metaArray = derive2 { name="metaArray"; version="1.60.0"; sha256="049xwhycw2czzshvy5rc4plngaylwrj3ilk7dzynksn7av6sz4zd"; depends=[Biobase MergeMaid]; }; metaCCA = derive2 { name="metaCCA"; version="1.10.0"; sha256="1h3xnrnlpbrjvrjpifm6i4kzyfgc2a0gnzpxya9lj105m9svpvca"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.18.0"; sha256="1f98hpx2mmygxfyrcccy9408qfm2gpcz4k9j6afw0irb4lsfpysj"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaMS = derive2 { name="metaMS"; version="1.18.1"; sha256="0ygci9hny7p90wf6inzw8qgbm8vl82d2n2wvcac5vdh8rsc4rdcp"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; metaSeq = derive2 { name="metaSeq"; version="1.22.1"; sha256="00jwcgcx250v9glqxc1d0cvydn2jqzxxq62jmwskv87av68ppqbs"; depends=[NOISeq Rcpp snow]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.16.0"; sha256="0xcmfsy6ilggal6l9x05yz431jb2bs4qs0nlf5jq52xwvqz10q0d"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.16.1"; sha256="1nz1higya3i7lbmqgxv5fa4nxwpm7b2fvsa69x52b36i0z70y7lc"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; metagene = derive2 { name="metagene"; version="2.14.0"; sha256="09krnp862jz8mgjyp6v5ynvsrl4asfvzsvi21rj8af5b0ywkwvwg"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; - metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.2.0"; sha256="04kw9lpig17b2l1z3qnr56wglasij5bzcxyzvkv9zar63l4acrv8"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr purrr RSQLite S4Vectors stringr]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.24.0"; sha256="1cbryqcfv5f3jvs9f4zjf5zf834jv12n2a2jj2h94z7zaql8zpqq"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; + metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.2.1"; sha256="0mja44akzn9xzvwdiia368cyxpdmc67zsqim0mjsml9ip8ar5im6"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr purrr RSQLite S4Vectors stringr]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.24.1"; sha256="0zsb9vilmkvmx7vhw4074qgkxi5xd0kihzx2q5bi7l2zjd152y78"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; metahdep = derive2 { name="metahdep"; version="1.40.0"; sha256="02xw6pb6688hhgq3213s55sb73qmd6xjfaqk7bz4ci7m4ilf6c2k"; depends=[]; }; - metaseqR = derive2 { name="metaseqR"; version="1.22.0"; sha256="1plqlhwy595y7scqzz2vjygjscdn0gdp3vhrdkhc0vk63li66z7a"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; + metaseqR = derive2 { name="metaseqR"; version="1.22.1"; sha256="0nrvm55jx25mwrdg9p52mlbvvcqcvkbg2z1i9g5fhb0c7llcrldx"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; metavizr = derive2 { name="metavizr"; version="1.6.1"; sha256="0gkmfial3m1q46dnja1irk2jiib0rcg6h1vzq1wa2pxfsg4sa0sx"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; methInheritSim = derive2 { name="methInheritSim"; version="1.4.1"; sha256="0cshckvhrvlq9wgcjk3z2bi1qfq1my947rwvdma5la8ydf3x1i5w"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; methVisual = derive2 { name="methVisual"; version="1.34.0"; sha256="09ss0s5z950m6v2y037v8qwsp238w73302ls1xh9ps8gkz05a800"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; - methimpute = derive2 { name="methimpute"; version="1.4.0"; sha256="0z16bx2lb0g5sp0arc2s1zs3s87c62pgz6wy1b7a491cpplpxmlx"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methimpute = derive2 { name="methimpute"; version="1.4.1"; sha256="1xcparys2ifv2y5rp8ih558l8apnw5b3mjnkkc29szf38mzk9a1r"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.24.0"; sha256="0afgaf3xl2dnpl86agbx44fiq4i5i96535p3hd9y845xdq5ymvnp"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; methylGSA = derive2 { name="methylGSA"; version="1.0.2"; sha256="11wrks3fc9fyrchcc41203d6yfkd8cvigi5w4di2hxdzijg8qlm2"; depends=[AnnotationDbi clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg stringr]; }; methylInheritance = derive2 { name="methylInheritance"; version="1.6.1"; sha256="0n11jkka37aqmirn73hl8kabilb220i1pv10i62jzq623sqpdsz9"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; @@ -1287,7 +1287,7 @@ in with self; { methylPipe = derive2 { name="methylPipe"; version="1.16.0"; sha256="1qrvf0kf1948v2bhkxv979p6cr8mknmqkb04hz30bm8fqpmn1wfw"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; methylumi = derive2 { name="methylumi"; version="2.28.0"; sha256="14p2qi18cprfvb2gxng1vm48c7zwh23h88q9qjgipj9xl5axsgw2"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; methyvim = derive2 { name="methyvim"; version="1.4.0"; sha256="1scybf1hdzyvjmcbfbqpbwph38alp594lj3ggxcdgfxvjapq3rsb"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi S4Vectors SummarizedExperiment superheat tmle]; }; - mfa = derive2 { name="mfa"; version="1.4.0"; sha256="0kp314rshiidi3zp78a5wlbsrnqrcaa5bqz5qs5nkrzlvz5w6y11"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mfa = derive2 { name="mfa"; version="1.4.1"; sha256="0khilki6kp63lij5nfcl36j161aqndr385p15fnmvg38qql88px7"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; mgsa = derive2 { name="mgsa"; version="1.30.0"; sha256="0b30hlqyx8aw8a9naln2m5k8lgkr9f9fgv1mwnww5xiwqdnbqfcw"; depends=[gplots]; }; miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.6.0"; sha256="0gb7vg35wff0kckb6dqkggvshdy43q04f07niiqamnl71h59wjh7"; depends=[]; }; miRLAB = derive2 { name="miRLAB"; version="1.12.0"; sha256="0vpvd93zrz4ihcinpwppc954585vjafmcpj1rpamqkyi2giyxldm"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots heatmap_plus Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl Roleswitch stringr SummarizedExperiment TCGAbiolinks]; }; @@ -1302,14 +1302,14 @@ in with self; { microbiome = derive2 { name="microbiome"; version="1.4.2"; sha256="0amla1m69axhlslbg1pbvl61qyxb6qjpdfd5g2j8b116h8xrmyab"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; }; mimager = derive2 { name="mimager"; version="1.6.0"; sha256="097fv7wfj0wj0chijcl5v52lf35pc48va1ddsq6qii5xzi626cpd"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; minet = derive2 { name="minet"; version="3.40.0"; sha256="0hb1k3p750qykmqjz59yjak5h8vmnln8zcp2dffjnqvwgn78i23w"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.28.0"; sha256="0bdbrk0rlh1sg38yjs92rjxdzj11m9fww4jyvcfjydps8amil952"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + minfi = derive2 { name="minfi"; version="1.28.3"; sha256="0la40n72i7r6mip8lsnnnv84l1pp07p7bhmhlqnm5zirin03lxh6"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; mirIntegrator = derive2 { name="mirIntegrator"; version="1.12.0"; sha256="1vgl2kz4jahrw885gib7yaxwliij1ric9mmsad8v4zravw7d9knj"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; missMethyl = derive2 { name="missMethyl"; version="1.16.0"; sha256="0axssdkyvdfpq7r47sckbbp7w8wa06j1ncskcn2w9f95nl1dbya5"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; missRows = derive2 { name="missRows"; version="1.2.0"; sha256="0fgw36358z0lc0ppkpy49vw1p2k2w3ji01apff8gpkfb310zipwc"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mitoODE = derive2 { name="mitoODE"; version="1.20.0"; sha256="1gf6isnf83x6sxmdankb2l63ms60lrpwhjnd8c3cpq2kalmj9dy1"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; - mixOmics = derive2 { name="mixOmics"; version="6.6.0"; sha256="186v3md70g8i54d93yjvdn973l0jq082jj1gymx2z79v5nv33kf2"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mitoODE = derive2 { name="mitoODE"; version="1.20.1"; sha256="17cppvvvbpa4k62wrih3q61mrkc3145d5macq0sp6vh2vag61xdm"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; + mixOmics = derive2 { name="mixOmics"; version="6.6.1"; sha256="1i21dxg30jvn3p8mhswcq0y326hxapcvhrphh98wwpxmbmnk4bhd"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; mogsa = derive2 { name="mogsa"; version="1.16.0"; sha256="14rl7md4bdpb24cxj5pmr196dy0amih8l4611kgwbrvdm9k13d3s"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monocle = derive2 { name="monocle"; version="2.10.0"; sha256="1rwd1qk82bx5dzqm12z8nya1bdikwm4mpwqyhwlfd018yqf99nhv"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + monocle = derive2 { name="monocle"; version="2.10.1"; sha256="0shwkgqs93j2l5h36yyvb1lf724107cfjrmzp5fxfj1lqc0y61lf"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; mosaics = derive2 { name="mosaics"; version="2.20.0"; sha256="1536y2fizmi7jafq7bhbv8bzpf5b97dfskpg9a7v4c9xv6isagnx"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; motifRG = derive2 { name="motifRG"; version="1.26.0"; sha256="1wxww6i0jgyapqclcwy0zzf9kqjvrvylr89z7yhg1izi7jnw2fka"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; motifStack = derive2 { name="motifStack"; version="1.26.0"; sha256="1c4w39ilc4ca4wgi1b6iypadkbxvqjw7k2br0d7q03niw9qjkhxf"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; }; @@ -1317,11 +1317,11 @@ in with self; { motifcounter = derive2 { name="motifcounter"; version="1.6.0"; sha256="04i8s6r26kir9fcqbvy1wfxrav5imwj4r0sqvsf4vq2jxkwb4brr"; depends=[Biostrings]; }; motifmatchr = derive2 { name="motifmatchr"; version="1.4.0"; sha256="1s65gr15iil1y8sa7wggrj5sb0mgw6vgs2qrmk1xka9zqjx957kv"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; mpra = derive2 { name="mpra"; version="1.4.1"; sha256="0wwn5cix0npk8lhsmk9dzagnfrqcn9x22wzgf5kq3xk4gwaraqdw"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msPurity = derive2 { name="msPurity"; version="1.8.0"; sha256="13r16568c5zdl1gc5r1np91vqcr5vw14g3n21c1s43f5ia0nmwjv"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msPurity = derive2 { name="msPurity"; version="1.8.1"; sha256="00v9bgwjkgkwkpf5yq13snncayn76iyp0k6r7lbq1lhf5p4cxw6m"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; msa = derive2 { name="msa"; version="1.14.0"; sha256="1g0ny0hjnzwqh9kbp6n770vfdvxsl95vhiydjqasma2hz205plf9"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.6.0"; sha256="19gwfx682fqrnp43jrvdmdlhww8lmknnxzdxzszifzass7vgqp1q"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.20.0"; sha256="1gyqnmw63xgi1zd3578g5hlnq5b6hlv0dkm7dz6mka1pqc5gdlqh"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.20.0"; sha256="1fvvs5963104iwwvds8ipzf298dbkg4gb6bn98a8zd1z4c2lma03"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msgbsR = derive2 { name="msgbsR"; version="1.6.1"; sha256="0q7hz3ca4x0nagk9f65vni3qn5z08irmxc5344rgn9mscafchfbv"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.20.1"; sha256="1jrlxgzh3kdr9nhr9qd7hi5ahg9r2589drhq4klkcrwvfy013j7b"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.20.1"; sha256="08w3hmmmhxx5dvki5sfgxrhdqfy1xdxcbnpy4nvszhgmyc18zjzp"; depends=[edgeR msmsEDA MSnbase qvalue]; }; multiClust = derive2 { name="multiClust"; version="1.12.0"; sha256="0ddk1sl9zsc4dgrxasnqa2h341blirpwzygl89wh2k4ga0wsmw6q"; depends=[amap cluster ctc dendextend mclust survival]; }; multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.0.0"; sha256="0aixi21zmj2lc54cmkqc9k596nll01nyxhpkkzx40lv7jihw6p1c"; depends=[BiocParallel BLMA data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare metap pbapply pheatmap qqman]; }; multiMiR = derive2 { name="multiMiR"; version="1.4.0"; sha256="1mip48rcqk47sj5sdqi2rxcwsd6l6v3nssnnkx41mpx8amn3cigb"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; @@ -1331,17 +1331,17 @@ in with self; { muscle = derive2 { name="muscle"; version="3.24.0"; sha256="1v0n6ncq467kpfli498gddz0r6ilkhjfw0q9srl1gcknz5y2frsw"; depends=[Biostrings]; }; mygene = derive2 { name="mygene"; version="1.18.0"; sha256="03knrfbqm9hr30l3s58jkqyl6sl83p1vf4zyahr1ld0qrw81pvx7"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; myvariant = derive2 { name="myvariant"; version="1.12.0"; sha256="1vsp8m6rwyk09i0rg5j8w29vgn5hzz7fh8gc2fbjbg3icls26gn8"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.20.0"; sha256="08jbq223viwknsmsi30hyxyxslvmb0l4wx3vmqlkl6qk4vfmxzjz"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.16.0"; sha256="0li1y6p95ljiva4lvfmql9sipn4dq42sknbh60b36ycjppnf8lj5"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.28.0"; sha256="001nrbhzdm1vjprn0w4qrgbkq6cxvzfymvviqp0fkcvjfwiwxax5"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.4.0"; sha256="10f4jm1dar67kiya19qcn04virb1jn4zafllp370jcqn7flm6abs"; depends=[httr igraph jsonlite plyr tidyr]; }; + mzID = derive2 { name="mzID"; version="1.20.1"; sha256="15yd4bdxprw3kg7zj2k652y3yr3si781iw28jqvnkm0gsc23rd0c"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.16.1"; sha256="0mlwg646k49klxrznckzfv54a9mz6irj42fqpaaa0xjm6cw2lwaa"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.28.1"; sha256="1nabfa8nz6plw8w2xfla0xffqmxyk699dbv9615cazhf6vl6289f"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.4.1"; sha256="067x2sj3pnq3hrxjpw4y4qp9gimgymxik9zdqjkirix77h817682"; depends=[httr igraph jsonlite plyr tidyr]; }; nem = derive2 { name="nem"; version="2.56.0"; sha256="02j5rm0h9bjghgba244k0acshbnhrr38ghvx6cmf8za8fw19k3v2"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; netReg = derive2 { name="netReg"; version="1.6.0"; sha256="01qxq7zlbmvh0mazw069fm6bjw0ks90baj8y5i0jc7m101dsm2qi"; depends=[Rcpp RcppArmadillo]; }; netSmooth = derive2 { name="netSmooth"; version="1.2.0"; sha256="1cz3rca9ig9jl8ddcadbij129v5rpb86ncfrdmfj4m9qy0krlyac"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; }; netbenchmark = derive2 { name="netbenchmark"; version="1.14.0"; sha256="1gc8dnma4pr1j9wq422x8xh89mvb15kyvjvv86fhhshvdisihngw"; depends=[c3net corpcor fdrtool GeneNet GENIE3 grndata Matrix minet PCIT pracma Rcpp]; }; netbiov = derive2 { name="netbiov"; version="1.16.0"; sha256="0zg4wkf4z6yi84sdp4h8dg8cq5sm6m04abg15hm68y27vw42prs2"; depends=[igraph]; }; nethet = derive2 { name="nethet"; version="1.14.0"; sha256="1xp08ad4lsmrjgvqydr85k4y0b57hcaxicndh4hz4plqswzl7qpf"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; - netprioR = derive2 { name="netprioR"; version="1.8.0"; sha256="0yw9rpyflk6kcw6w5gm2n2wxqf45mjk7scf4cl616kkr7h4jgkaz"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netprioR = derive2 { name="netprioR"; version="1.8.1"; sha256="1phdaklcwhv1rv94dvz4mcwi5f1b3gya7bwv7489hsx7pa149sac"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; netresponse = derive2 { name="netresponse"; version="1.42.0"; sha256="16hgcjzvbsx1lj2aq8jkam926ykb06im06rr62z705x6hna8k4g0"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; networkBMA = derive2 { name="networkBMA"; version="2.22.0"; sha256="12pl1hl1r2j3kvbr061xzzv5fmkh1g60j5ihvzi14gy8chvjk7wk"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; nnNorm = derive2 { name="nnNorm"; version="2.46.0"; sha256="0fslid2ywqbx4d3c2gvhhsmkkkidgjnlr8jsd61qralcdln494wv"; depends=[marray nnet]; }; @@ -1349,27 +1349,27 @@ in with self; { normalize450K = derive2 { name="normalize450K"; version="1.10.0"; sha256="0ab9g0k0y8lzqx8vvfwxy8yjmal4lgxf64fnz0923jss98czvk21"; depends=[Biobase illuminaio quadprog]; }; normr = derive2 { name="normr"; version="1.8.0"; sha256="1yj9nnfzj522yr5nw0sm9l6cvk21w4vpxn0bayggs2wx5g03pbsj"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; npGSEA = derive2 { name="npGSEA"; version="1.18.0"; sha256="199n898qn6799p6zk46vlz192zj0z10f9q0xfc129ickfa7zk6gf"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.0.0"; sha256="1ibw5z9p02smbbv2p8spsrdapjy29675h0app3y08m8gdyvbrix8"; depends=[]; }; + nuCpos = derive2 { name="nuCpos"; version="1.0.1"; sha256="0waac65n10izn8a6r2rlgi1xwjdc1yxa0pwlnriwkzdg9hpszbdd"; depends=[]; }; nucleR = derive2 { name="nucleR"; version="2.14.0"; sha256="19y2ars61gbzglqvfzj2xq08iw34vnjm3fzn4dx67r0ivnxncs34"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; nucleoSim = derive2 { name="nucleoSim"; version="1.10.0"; sha256="09mls6rv9qw9w1g3avgj57pi2avg4pnlbcbg29da0szz0dbbb7yn"; depends=[IRanges S4Vectors]; }; occugene = derive2 { name="occugene"; version="1.42.0"; sha256="0sqmnr571rx18mh9m9ivjp79bqn6dydzhh3h4xc7xxwqwwp0l4fa"; depends=[]; }; odseq = derive2 { name="odseq"; version="1.10.0"; sha256="0936n8qzxcaxlqwpzh3dc2gnzh7q5cyrk4cif3vxb4hrlix8b1bv"; depends=[kebabs mclust msa]; }; oligo = derive2 { name="oligo"; version="1.46.0"; sha256="1j9p22chnb09fp26xnlx5zmrxccg0q56ywgxfvbmm0s2jnr02nam"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; oligoClasses = derive2 { name="oligoClasses"; version="1.44.0"; sha256="03kdxgrznx204y7pma1ca4bjgrhhhwfz2ia9radgkl70m447hz13"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.4.0"; sha256="0hbnh85iqjhmjz2h3lxiks947nahcs4c7nryy3h686kay40v5f5c"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.4.1"; sha256="0jfyin051mwif6sxng7y51pc4gc1wxshfpy09zcj33j9cx2yabcw"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; omicade4 = derive2 { name="omicade4"; version="1.22.0"; sha256="1bwfbzkq7p9h1njgaj15hk69cw9649kq5hwf2k8jf3spnbirp114"; depends=[ade4 made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.2.0"; sha256="1v77lijpzg7k12v48dcyzsdgh02klhcnlj0xj7ab670v407iy0y0"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.2.0"; sha256="0yxcx787nq1kw2cd8ybic2yqknk2g46zgh89sr2y0wavsmqjv026"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicplotR = derive2 { name="omicplotR"; version="1.2.1"; sha256="1dj2n3y6rhrhiy36hpmmy468zbjcibq0f36lymz217iklh93m0lh"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.2.1"; sha256="0ri8is6d9vl44l1l8hizxa7ysc0inq81kqjjdxr8x09q4xp2hyw0"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; oncomix = derive2 { name="oncomix"; version="1.4.0"; sha256="00pwd0nbbdlv35p85h5kqybvvzz2833qx2jgprffg2bhmxvaky8w"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.4.0"; sha256="0f2m7xnv9kfzx36dav0g2hh24rfgrd7hzcm1drfrcqp1qw6g19an"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.4.1"; sha256="0hipmgwy8wy7i8mc35vdkgfbqz6g2wcqczl78x9i41av4dacpqz1"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; onlineFDR = derive2 { name="onlineFDR"; version="1.0.0"; sha256="1738wy4px32jzinj9311hvng887ys61dqqs3m3zi5cqkpwcs19hd"; depends=[]; }; ontoProc = derive2 { name="ontoProc"; version="1.4.0"; sha256="08sgf142b8l4gdsap44b75jcxvwlcz19saqjrw9sg0307h509n77"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="1.20.0"; sha256="1z45r91fyih0jyj5a02bb0z6l3n2f6h039mzl2kn0wbykd63b3l8"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + openCyto = derive2 { name="openCyto"; version="1.20.2"; sha256="0fa39bpi26civ7dabxf7py6lydmkhss5gff6ykrbmwp85h9d2nsh"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; openPrimeR = derive2 { name="openPrimeR"; version="1.4.1"; sha256="0cmixmj1mnalr89c32ih5hf4v73qf4x73hzvbiw0mnz8niizaqgz"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr tinytex uniqtag XML]; }; openPrimeRui = derive2 { name="openPrimeRui"; version="1.4.1"; sha256="163a8frs637yvm6vqhi7sxashkbdc61m8mb5lc6n0i98zicmaj4p"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; oposSOM = derive2 { name="oposSOM"; version="2.0.0"; sha256="190sg040nxjja0phmw9k81s139756qsnk1pac3cby21ml6hwbr0j"; depends=[ape Biobase biomaRt fastICA fdrtool igraph pixmap Rcpp RcppParallel scatterplot3d tsne]; }; oppar = derive2 { name="oppar"; version="1.10.0"; sha256="012ypy3z2dgm6ddmbrq3vyyf5yk9ac18gs733s70jv61z2bd1rlw"; depends=[Biobase GSEABase GSVA]; }; - pRoloc = derive2 { name="pRoloc"; version="1.22.0"; sha256="1wqr85igb023bjxg2j2298lk0bd712gx345ypcdywl2infk92viv"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRoloc = derive2 { name="pRoloc"; version="1.22.1"; sha256="1rgxj737nsbql88gvbqa98ivkawmxj7ij1iidspn8frwg3jk2x2s"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; pRolocGUI = derive2 { name="pRolocGUI"; version="1.16.0"; sha256="13z6zd7m7hsjvm52lgy9v8ypkr6gs190c26qs0yzq7s4vfq48db2"; depends=[Biobase dplyr DT ggplot2 MSnbase pRoloc scales shiny]; }; paircompviz = derive2 { name="paircompviz"; version="1.20.0"; sha256="1iraq8n5q24zz3xdv15wiyhd5avz0yr6hh1mzygypp8bmhkgcixv"; depends=[Rgraphviz]; }; pandaR = derive2 { name="pandaR"; version="1.14.0"; sha256="0jm5xxxynrh08l0iz0wj7jl120a6vsglppryjhl4mgv7cs5pdx9w"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; @@ -1381,72 +1381,72 @@ in with self; { pathVar = derive2 { name="pathVar"; version="1.12.0"; sha256="09ncdyamlhs24yyg7fnb77vchqxpxh6asmj32pxhpvkkkgq106p4"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; pathifier = derive2 { name="pathifier"; version="1.20.0"; sha256="064q5nbxgyz4hx6h4f92w7vyd77pndmxadwa8cw9y5qzh9g29a5m"; depends=[princurve R_oo]; }; pathprint = derive2 { name="pathprint"; version="1.12.0"; sha256="06lv35nx0d098idjnlcr5bziilwnpapbbcsdfrwglcibgqis9hzh"; depends=[]; }; - pathview = derive2 { name="pathview"; version="1.22.0"; sha256="13gzl8kvmj3pvi09634kigxch055i5vw6l7b0r0ivnj84ff9y4b7"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathview = derive2 { name="pathview"; version="1.22.1"; sha256="19xvlk4sm0jf2xdl1cm2v8i1acxp8xk2yzpjgwv8r6x5h13zqpf0"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; paxtoolsr = derive2 { name="paxtoolsr"; version="1.16.0"; sha256="0sa680x51kcsbmlrb54z8m1qn1pjyzx7k26pni17mfdzaw1q9jki"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.8.0"; sha256="0g26dmzx3h7wlr1zy1vij41vir0zzwgfrdx5w7brrgsfinqvbimi"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.8.1"; sha256="1af9yf4nnsn3wb93zb0agn2vr04ianhm85326fl6qm51pmjljswh"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.26.0"; sha256="0rdj9043zdvfh2gwas13i6787kw01m1cr998prgf12n9l107v68s"; depends=[AnnotationDbi Biostrings ellipse]; }; pcaMethods = derive2 { name="pcaMethods"; version="1.74.0"; sha256="0ik82s9bsdj4a1mmv0a3k6yisa92mxx7maf3dvip1r8gqlm3dyng"; depends=[Biobase BiocGenerics MASS Rcpp]; }; pcot2 = derive2 { name="pcot2"; version="1.50.0"; sha256="0rj3wd9a917p20kr28cc8si7yjqdh9ddc3n58aih7f96v6qxzq4i"; depends=[amap Biobase]; }; pcxn = derive2 { name="pcxn"; version="2.4.0"; sha256="0a4hs1rc3p3lx9r188fgfhly60l570qna5ydmkixci5pjvnijv4b"; depends=[pcxnData pheatmap]; }; pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.46.0"; sha256="1fwkfyazqq9i51fq965xvxqmidmnzg9xxfk74abfaz8y0w4jamak"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pepStat = derive2 { name="pepStat"; version="1.16.0"; sha256="1msy1wcvp1d2sdddygnqkgzgldgpb6481wj0q0qvb8f2g47lghb7"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.16.0"; sha256="16g92abqcfwdv7x0bmanizz44g322nyrl15sg9g74j4sp47zamdm"; depends=[XML]; }; - perturbatr = derive2 { name="perturbatr"; version="1.2.0"; sha256="080naijyl2nq8zbvfsrj4vwsw63fw9l4535akddyzh40i5bwpn4a"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; - pgca = derive2 { name="pgca"; version="1.6.0"; sha256="1sgwmlbjj52nymcapmid3473qxzg6yxisq304ns2xzi5aq4pxfgb"; depends=[]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.16.1"; sha256="03szrw113d90aigy1hr6ylxwc3ccqxinkznfxb3nrw1fzipqz6c4"; depends=[XML]; }; + perturbatr = derive2 { name="perturbatr"; version="1.2.1"; sha256="17dbgj2g4c2bzi3sljh1zsx6azfb02hs3fiha6k01x92fwi83vik"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; + pgca = derive2 { name="pgca"; version="1.6.1"; sha256="1j55i52lz6k6bmvxw8vvbynmka43bcd857rl2dc5li5h3c04ympg"; depends=[]; }; phantasus = derive2 { name="phantasus"; version="1.2.1"; sha256="0nd4zfazkbny94s7jnvj8flnxdvhlv4878w0hklf0fnsyzgc9am9"; depends=[assertthat Biobase ccaPP fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix Matrix_utils opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; phenoTest = derive2 { name="phenoTest"; version="1.30.0"; sha256="0m9ginyg2jda48ihkvalzs89xpn3bshnyli26s0mb91hhdjcn55c"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; phenopath = derive2 { name="phenopath"; version="1.6.0"; sha256="01xh4yf2h63p1zgh7a68wl7yyfyg50kixii2bcckvhvlw7ywsq1d"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.8.0"; sha256="171xk27psjhyhb1pw0l6s93vf6clkcs63bzkqx4pfrkwmdw418is"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + philr = derive2 { name="philr"; version="1.8.1"; sha256="1rdgz4x54m2wlqrhr4nn26q28gzmlivsppzjj8h8g6h1gy7iqsj5"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.6.0"; sha256="186580zsbbvjz1nck1nrnp81yfyll0rzpbfij127h26ghq49lccc"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.26.0"; sha256="11k6pibnqj3fdf4bi6628cbygjkm0jlr6l4amzpq1k70qsnpi730"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + phyloseq = derive2 { name="phyloseq"; version="1.26.1"; sha256="13ap1jj6rh82f5x6x2cb29c6p3q3rfg86i0dzmj2f0lvsnhr9spw"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; piano = derive2 { name="piano"; version="1.22.0"; sha256="0fkimnbgmsh3x1r138855glml876al9fbzzz03xw5cybh0rk1ghx"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; pickgene = derive2 { name="pickgene"; version="1.54.0"; sha256="0lsyh1hlpnn7vxqh3ga69qs72wlsrn8hxnzvlv03ga9124kfmnr9"; depends=[MASS]; }; pint = derive2 { name="pint"; version="1.32.0"; sha256="0ppb7hghv0152qs6zac4i69r0sjckl9hyw8skbb0ksqv785yxpxh"; depends=[dmt Matrix mvtnorm]; }; pkgDepTools = derive2 { name="pkgDepTools"; version="1.48.0"; sha256="0bsrr3jya1nn694znbsq3zi4h099ak1jsak9fyyccd3icmcmk2x2"; depends=[graph RBGL]; }; - plateCore = derive2 { name="plateCore"; version="1.40.0"; sha256="1z6zyjzvj8igpl87wfxxsabvm0c2h8skgw1fy7hb22dlrsx9bx2w"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; + plateCore = derive2 { name="plateCore"; version="1.40.1"; sha256="15ffs6j5p8dfs75hc21rp3ngcrm3265h5a28vzax28p3850c3dy7"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; plethy = derive2 { name="plethy"; version="1.20.0"; sha256="1018bn55hppwrvj6i5yyzy7fscy1w5v616smpghmplbbycxv3gpi"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.54.0"; sha256="1bwz9pflvk5vyczb3gbb2cl5k7srpzjh64sjcabkjvdcj69jwhn0"; depends=[Biobase MASS]; }; + plgem = derive2 { name="plgem"; version="1.54.1"; sha256="1330635db3p8xm5y8fwrk1l37r6bgypsq70s3rx954i775zp6szg"; depends=[Biobase MASS]; }; plier = derive2 { name="plier"; version="1.52.0"; sha256="1xg9c232z3vlaa356g1c7b4ysx2bkck5ywb57kim9d5bgbvbk83p"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.0.0"; sha256="02xzjsdljy7yvi0cf9qjggsk6s61xqkhfg948d1pc0pzqhc2mrw7"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.0.1"; sha256="0cshh7dm559w5bmlly293vzndbzq16vkfml3siy8g8w480i0nfxj"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; plrs = derive2 { name="plrs"; version="1.22.0"; sha256="1xr6z9fdbdj8qyjlr1fw2mx30iqz1bcxcqs7snarc34qdzr088m5"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; plw = derive2 { name="plw"; version="1.42.0"; sha256="1kbn1hhqnf2cmqxjvq4whaj4h7i4v7cbcybcspafy4wvmysjsjvd"; depends=[affy MASS]; }; plyranges = derive2 { name="plyranges"; version="1.2.0"; sha256="12cc8pnlq1rq01dwia0994chflm184mp2yb983lz973fp0kpbhd2"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; }; pmm = derive2 { name="pmm"; version="1.14.0"; sha256="1ld7bcw6vphm48k8sy07j3j02pxfz6wiwqbz94jblc93s121b3z7"; depends=[lme4]; }; podkat = derive2 { name="podkat"; version="1.14.0"; sha256="0df21vdia2zl70niajwqfswbicwb2agarak7dyd7arp29xz9ivvf"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.2.0"; sha256="0s1wkagy4fi2mr65frzx890i3i0lmymlb2ygq7cw64b9kq0gihnx"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + pogos = derive2 { name="pogos"; version="1.2.1"; sha256="1y0v5r3f75qy67pz96siahxi0xdrilqz04v9qjl1ry866nfzjlkg"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; polyester = derive2 { name="polyester"; version="1.18.0"; sha256="0acwamzwhqbavv0pxah20230mlanncc71lwbbxwki948j1qvg3rp"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; powerTCR = derive2 { name="powerTCR"; version="1.2.0"; sha256="16x8kzidv6d2zm61jw47dgr047ijfkm18xddkk70qxgkrqc0gdpa"; depends=[cubature doParallel evmix foreach magrittr purrr tcR truncdist vegan VGAM]; }; ppiStats = derive2 { name="ppiStats"; version="1.48.0"; sha256="1aclxj5y32rca97qv5gqfgsq2aly35gs12jxbvwikwbw6hwvi6pn"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; pqsfinder = derive2 { name="pqsfinder"; version="1.10.0"; sha256="0f0q4vcrwghzv9lg9s4zf46b201nr3ny1b1l56xgd1mw5n7p3mqw"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - prada = derive2 { name="prada"; version="1.58.0"; sha256="005raxhmk17k6k4liiik7msqislr3hm6vdii48bf5kpqk900kzz7"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; - prebs = derive2 { name="prebs"; version="1.22.0"; sha256="0bbc15zzcinwl3svf5mggzfck0ivzm4wlm30n18vi882h2j6cqnv"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + prada = derive2 { name="prada"; version="1.58.1"; sha256="0hasynlsbyvircf3njss8kvijkmrc0h7i5cch9x1c7zlsvz9ai6s"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; + prebs = derive2 { name="prebs"; version="1.22.1"; sha256="0b9x855sqrpiz1rdkl1hrflsg0x6fbdcakkh7602zf14fbbdvdyd"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; predictionet = derive2 { name="predictionet"; version="1.28.0"; sha256="0hhxdvc30pdrpc96i4jvdn4q8gycdlk6hi9p8xdgmfin6pp375rk"; depends=[catnet igraph MASS penalized RBGL]; }; preprocessCore = derive2 { name="preprocessCore"; version="1.44.0"; sha256="0ijyjqi8mxxf350dhvgp36swwww5ag7ac9a6r6ymihc5syjr4w4j"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.0.0"; sha256="0bkysms6qxkcwd839a4l3ksrksfp163xi343yp3i1wgy3fx1yn5q"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proBAMr = derive2 { name="proBAMr"; version="1.16.0"; sha256="11403f1z77wafpmhi58nl06lrvnpwbnchyyv5hvnwn4wpxax89jq"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proFIA = derive2 { name="proFIA"; version="1.8.0"; sha256="107f2lkx3vcjw8x827mzgn8qgc284wpld4d2chz18kgax3lwbk22"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + primirTSS = derive2 { name="primirTSS"; version="1.0.1"; sha256="05qi4dhazxfgqr5hzcbbbnlzh4ffqqz266bdxgwpmmi9ri3jw7gc"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proBAMr = derive2 { name="proBAMr"; version="1.16.1"; sha256="0bsg3g0vqmv5xqn98z9bfj6hjpcfs6zzpaiiih8y5yq8wdbsi3np"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proFIA = derive2 { name="proFIA"; version="1.8.1"; sha256="1y9d57nrd5zbdnis0wqzk6k1p74f2i8qidjn3rl5xydpvnbqdfh5"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; procoil = derive2 { name="procoil"; version="2.10.0"; sha256="0bv9kq1jsviyxvnclsc47lfjpxwlvsk479bk65zg0qbi397a3cwl"; depends=[Biostrings kebabs S4Vectors]; }; profileScoreDist = derive2 { name="profileScoreDist"; version="1.10.0"; sha256="0xfnava0bqpsqwzzw5nkwqkcajzacvifd3b2jm3qg5579myjprx4"; depends=[BiocGenerics Rcpp]; }; - progeny = derive2 { name="progeny"; version="1.4.0"; sha256="061d2gszqwzx77dslcijz2jisfd6k49cimjbby7g55y27zgg920z"; depends=[Biobase]; }; + progeny = derive2 { name="progeny"; version="1.4.1"; sha256="02z09rbzi305jrwzai8zayxi82563lxcaldp4r9pw564qkbl7pk7"; depends=[Biobase]; }; prot2D = derive2 { name="prot2D"; version="1.20.0"; sha256="0ljggyj557zmbf51cgvq3sl42xqgqh3a2wayyd6s8501ww1xk7fg"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; proteinProfiles = derive2 { name="proteinProfiles"; version="1.22.0"; sha256="1jjricjdc9l2lk7m48x3isrzmn8jxsy8x865ijnmqz9zlzgzz8zs"; depends=[]; }; - proteoQC = derive2 { name="proteoQC"; version="1.18.0"; sha256="1jk95lvggcjfnnpcapqiwh0q7h0zyfda9p4aakh4fibz5f1x6r23"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; }; + proteoQC = derive2 { name="proteoQC"; version="1.18.1"; sha256="0p2wc5lp7ls80lkjcr5f0zjiq0y9xdallg8yjhprb1cicwxdnd5g"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; }; psichomics = derive2 { name="psichomics"; version="1.8.1"; sha256="1y8yzbjv947kccfzgxka2df5zl58n0wndimhvpffyx8r361dj824"; depends=[AnnotationHub cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma miscTools pairsD3 plyr R_utils Rcpp recount shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; psygenet2r = derive2 { name="psygenet2r"; version="1.14.0"; sha256="11vsh96pmbf4ypyszgz3yqr0y3q7rxxd61hx2xhwy4v82fq8il2f"; depends=[BgeeDB Biobase BiocManager biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; puma = derive2 { name="puma"; version="3.24.0"; sha256="1mjl2zkf6kxcadb0pcp157hhq4dgrxzjvs5i5s8mfxx54d7i80ih"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; pvac = derive2 { name="pvac"; version="1.30.0"; sha256="0r92vrsbvbmyqajcldnjfnyigq5ppsh3bgm5h1i299sr4q7m85iv"; depends=[affy Biobase]; }; pvca = derive2 { name="pvca"; version="1.22.0"; sha256="0s45j854parwwp5f173p5m8f58n18fqdn4z4z7x2ap5f733fr483"; depends=[Biobase lme4 Matrix vsn]; }; pwOmics = derive2 { name="pwOmics"; version="1.14.0"; sha256="0v5gsk82899i98b8kv95mj4qry0j8plbj7qb1qsl5k51hz79i5pz"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.0.2"; sha256="00skq2rxrxcc51j46jqinrrcvx6c9ldshmbxqy0v5l57p5wybf14"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.20.0"; sha256="1wysijshlh0hvpka3im5cfgz7z5k18cy271drrcz58lyzwk424rl"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.0.3"; sha256="0m53nk9nqc5cc217ca51fk3bws56gz6xc8r3mqa7qdqlf1k91g5h"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.20.1"; sha256="0v09i2njk3l1am3vgmhn48hii7h4kzwdqz6hyb1ix8n9zc423rzs"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; qpcrNorm = derive2 { name="qpcrNorm"; version="1.40.0"; sha256="0m67a0b3i5nmd2lxx9ga0p6223y9x0bpz2j8gvqzsjnkh4ix1z0g"; depends=[affy Biobase limma]; }; qpgraph = derive2 { name="qpgraph"; version="2.16.0"; sha256="110krd6sf87qai60qf9ixgkc43i51xvfiqnzdmwk1na2qhda2sp8"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; qrqc = derive2 { name="qrqc"; version="1.36.0"; sha256="1pdadzlfx5kbsyp79iqxdliilsnhvx1d9j4dj89pl8hgz4n1zyvz"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; qsea = derive2 { name="qsea"; version="1.8.0"; sha256="0m6h75fvzg7chi2sasaqrddxgl27qymxim7j7j3wg0gizhm2w59l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; quantro = derive2 { name="quantro"; version="1.16.0"; sha256="1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; quantsmooth = derive2 { name="quantsmooth"; version="1.48.0"; sha256="0s7dwf4xkj6ab12ra0ibkn9myif174s476s8nkaz8x8a8yxlzmjn"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.16.0"; sha256="0027bg7ri17fv7f1aypg2vlvffbh4c3p4fa3snwgjmiv86d1g51b"; depends=[Biobase limma lsmeans nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.14.0"; sha256="03qxshqwwq1rj23p6pjrz08jm3ziikvy9badi4mz2rcwy2nz783a"; depends=[ggplot2 reshape2]; }; + qusage = derive2 { name="qusage"; version="2.16.1"; sha256="1jdslydj6nrwbysmjdp96iga93f5z56m2ilqgwwpcizzhlid25i3"; depends=[Biobase limma lsmeans nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.14.1"; sha256="0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"; depends=[ggplot2 reshape2]; }; r3Cseq = derive2 { name="r3Cseq"; version="1.28.0"; sha256="00gx50wlnq3dxybsj8fiwb0qmlyk9f9fddya7wckgs4yjb0y9lv4"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.22.0"; sha256="1zy72y9wiskwr4nymka3p9cw0zbgg0883422ysiijqkywz5cvawn"; depends=[data_table XML]; }; rCGH = derive2 { name="rCGH"; version="1.12.0"; sha256="0ydd8685ly3kgvry09d0dc8lm6zl9355361bi7y6ra2v7sz4rvbj"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; @@ -1455,9 +1455,9 @@ in with self; { rGREAT = derive2 { name="rGREAT"; version="1.14.0"; sha256="0fpi797byvplg73hinsnm07nqgknwb4cbcn0wdw3q178jmksb5j0"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; rHVDM = derive2 { name="rHVDM"; version="1.48.0"; sha256="0mf74pi9p7kfl9c2hjkmvfzsdfq7sp6gpbxlinj3k3vlbavpkgyg"; depends=[affy Biobase minpack_lm R2HTML]; }; rMAT = derive2 { name="rMAT"; version="3.32.0"; sha256="1305v5gsbwvy2z7r0gg4gq48xn9yxgbyk4jpjfxaqza49l5sf283"; depends=[affxparser Biobase BiocGenerics IRanges]; }; - rRDP = derive2 { name="rRDP"; version="1.16.0"; sha256="1idrm7d2rsjnlhfyqf8klihcbg1p8byzsx4kjm3l5f4a64407cd7"; depends=[Biostrings]; }; + rRDP = derive2 { name="rRDP"; version="1.16.1"; sha256="0wahgg5l640nyiznjx10gc6xds0bssw7cpapk844a7i9d7l8my2f"; depends=[Biostrings]; }; rSFFreader = derive2 { name="rSFFreader"; version="0.30.0"; sha256="14x6xdhdavfrz3ylkys3dlzr8hwshc6v43lccvl4lfhc3jq8xhj5"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; - rTANDEM = derive2 { name="rTANDEM"; version="1.22.0"; sha256="1a4rildmvvxd9h5s969sjnf959zkhw6qxq37zxzcpgckx69bb8mm"; depends=[data_table Rcpp XML]; }; + rTANDEM = derive2 { name="rTANDEM"; version="1.22.1"; sha256="1nfh0423jfzf44acqn3jlnl3561lkxwjxv6i7y3h5j4zi3309q2z"; depends=[data_table Rcpp XML]; }; rTRM = derive2 { name="rTRM"; version="1.20.0"; sha256="1alz54x6vxsm7mhsasn1cviad0gbg3vlrzm3m5mf9rj61nlz6zgd"; depends=[AnnotationDbi DBI igraph RSQLite]; }; rTRMui = derive2 { name="rTRMui"; version="1.20.0"; sha256="09rc2kvcpi7c0b0dmq07byrd5208szwm4nvisdr8xhnhcsxq8f51"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; rWikiPathways = derive2 { name="rWikiPathways"; version="1.2.0"; sha256="19sndn705580cg6idwnw9rbr92cgl83lv0zbvdaxnrvly22i9242"; depends=[caTools httr RJSONIO]; }; @@ -1470,93 +1470,93 @@ in with self; { readat = derive2 { name="readat"; version="1.8.0"; sha256="0sg4dccxkyl7arlfhd0qmq1kx5f1sykvi822ssh0brp8yjj1hx53"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; }; reb = derive2 { name="reb"; version="1.60.0"; sha256="1a62sfl0hw9nqw25b7hv76m9bn5l56d0sin1ii9s4qa2hj67nwxy"; depends=[Biobase idiogram]; }; recount = derive2 { name="recount"; version="1.8.1"; sha256="1aziihmg3jq3qrkvg39fmx4wawmpdgvcp8f4zxnl6fq1p2p2rfw3"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recoup = derive2 { name="recoup"; version="1.10.0"; sha256="1vlprf6sv3cq8yvs2xbvnqs5kg60j2mj1hm2a60pax2mx6qzrddz"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; + recoup = derive2 { name="recoup"; version="1.10.1"; sha256="0s4lhxffaai3l0rs4h62zcn0y5kxnmqxvcdnin726q3sc75b7h7l"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; regionReport = derive2 { name="regionReport"; version="1.16.1"; sha256="1c4yf6nda4i9h4mapskfnxrrzgv5ic8bkbwyssd650vx840agj99"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; regioneR = derive2 { name="regioneR"; version="1.14.0"; sha256="19la74swgzxp90z2nr3pzsgkxd7wp70zl6i2ipv3plg841f6k5zd"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.8.0"; sha256="122dxmaxs5kvd8baqsc0jsywxyl2wx7g0fvn38xfv9c3q018jb42"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - restfulSE = derive2 { name="restfulSE"; version="1.4.0"; sha256="0r4f34lg5f3fl4lcfkjx0lqkvdyc07s1pxf29365is9jayaa2v5l"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + regsplice = derive2 { name="regsplice"; version="1.8.1"; sha256="1b5byldkilqshrhdqzgryjasz0m7545x4pa7vy1gk8h91amk52g8"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + restfulSE = derive2 { name="restfulSE"; version="1.4.1"; sha256="00l2j1plx5bfjici3zp3v7yl8dzhdrkjpqi3wbf39y1l816wmpxx"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; rexposome = derive2 { name="rexposome"; version="1.4.0"; sha256="1i0c97lfl18s647l36y0wpjd516viysfcybyp6fpkn8j04v7zxg6"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; rfPred = derive2 { name="rfPred"; version="1.20.0"; sha256="07fw3y7jsk6yzqsq521r2d7mckyn7b167y9sc9r6zqsixj9g3fa1"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rgsepd = derive2 { name="rgsepd"; version="1.14.0"; sha256="1v7bbdwxizy7dbkyid55v8xvpwq6dmrsaw580acllrg7p9f3dfah"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; + rgsepd = derive2 { name="rgsepd"; version="1.14.1"; sha256="1my5mhja9qvxl1kwxynf77vawgnk4hmnl4hdrry3x325hpyd2sir"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; rhdf5 = derive2 { name="rhdf5"; version="2.26.2"; sha256="10zkw3k13wmvyif417gplyf6rwp2gpkjasw97lhwv2f9i32rry9l"; depends=[Rhdf5lib]; }; rhdf5client = derive2 { name="rhdf5client"; version="1.4.1"; sha256="1pbdwrzwa7r65wkcw821khnvcjy1rbx4vm8rln5srkra5zgmjjhx"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; riboSeqR = derive2 { name="riboSeqR"; version="1.16.0"; sha256="1nacsbsz77fw4a10nqj2ncsf25q3aaa0gd5w1q0ray2prx7qmlqb"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.40.0"; sha256="0ryc2693zhnsppc2f48hmj0g56acms24g96b97vmkcimddvlp7x3"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.40.1"; sha256="13fa822z9mmidq30b4ar7xqj7qjkkdp6ih8j0rn6hc5gjhsqy6sh"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.12.0"; sha256="0n4jpd9aqbc14wsi8k1vqhdaz7gp6nn7qr3nk3s783q293rjq1m1"; depends=[RColorBrewer]; }; roar = derive2 { name="roar"; version="1.18.0"; sha256="15650s9vs7dvmqpvrs4xwn6j4kh14yqsx4daqyhhxxr68kn8mklw"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.10.0"; sha256="0gfkz6lbgwqsbnhgsilqpbag66p4c5yl8ha0md5za0688krwv11d"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.14.0"; sha256="06rh4j0prsmph4qsp8054yvmvmh5byqnfxw9ab9clabqf7kwxnc4"; depends=[Biobase]; }; - rpx = derive2 { name="rpx"; version="1.18.0"; sha256="1l6r69i6ji8yaa21zdw4idhisf01ixbb1zvm0cf46dqhymgcqlm4"; depends=[RCurl xml2]; }; + rols = derive2 { name="rols"; version="2.10.1"; sha256="02cqiwbrxrhdc3pbq8vr1aasbark51gyf6y7i5z6lxng20sx2l1b"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.14.1"; sha256="1g1r96qmc4j1ynsscglfznm51598m95aiwc2qcawv50g02byzsbv"; depends=[Biobase]; }; + rpx = derive2 { name="rpx"; version="1.18.1"; sha256="14w96lwrx0h1v7pijva2gxwwxsb2lq4cnjaf26wx6wbjw28cni1l"; depends=[RCurl xml2]; }; rqt = derive2 { name="rqt"; version="1.8.0"; sha256="08kics4hq4y23ydilafylm2rmbnh88hj02rrd5bbl5685as724vn"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; rqubic = derive2 { name="rqubic"; version="1.28.0"; sha256="0va7263mxij13qyjmqrv9hxbgxig17hjw1617v0gzrcprs978735"; depends=[biclust Biobase BiocGenerics]; }; rsbml = derive2 { name="rsbml"; version="2.40.0"; sha256="04brk985cdf6psr8ixkqahg9nmb7lrv1jfy0j1c84l2znskya77f"; depends=[BiocGenerics graph]; }; rtracklayer = derive2 { name="rtracklayer"; version="1.42.1"; sha256="1ycmcxvgvszvjv75hlmg0i6pq8i7r8720vgmfayb905s9l6j82x6"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; runibic = derive2 { name="runibic"; version="1.4.0"; sha256="1s1zbcbfxbchrh8h9602n5gh8ji8zqll9kfd4wg3w3668ckv7vx3"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; sRAP = derive2 { name="sRAP"; version="1.22.0"; sha256="0qgskdizjh8z15qx4lvrdy5rg7h20hdg454n2wqvpmrk6wvp0ylp"; depends=[gplots pls qvalue ROCR WriteXLS]; }; - sSeq = derive2 { name="sSeq"; version="1.20.0"; sha256="0kqlyaj8cbjh1l7ngpq4xshj4g60dnsfbsrxhj3ijh3ci8iwpp8g"; depends=[caTools RColorBrewer]; }; + sSeq = derive2 { name="sSeq"; version="1.20.1"; sha256="08f59qg96qkndrlkdyk3i495i00gcx5kj1jcdy6zqkm9j7km88y2"; depends=[caTools RColorBrewer]; }; safe = derive2 { name="safe"; version="3.22.0"; sha256="0is94jnljq0lsqiyvy91bzkv7xig35q97cjwziszxr9gacizyqay"; depends=[AnnotationDbi Biobase SparseM]; }; sagenhaft = derive2 { name="sagenhaft"; version="1.52.0"; sha256="0rx7vkm19m18wvyawypp20m1ib7wi8yrmrpj1fg0f15yf9nfiwjg"; depends=[SparseM]; }; - samExploreR = derive2 { name="samExploreR"; version="1.6.0"; sha256="12lhjrbv8b32gwwzmwhm793m1bv7lbma459q5zg1x2ixmqq7aaiv"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.6.0"; sha256="1bq202dmzyiw6ydksm2yb41zj55zrxl0y4b6ph19xjadgs21wy17"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + samExploreR = derive2 { name="samExploreR"; version="1.6.1"; sha256="0qgqjd0s4j722z621gi6nggg1m2a123k1rmmxrad01hpwya5magd"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.6.1"; sha256="07aj8rmyvckxngy8y54qqzb85jn6k76l63n0jmdy2c50cizw53l5"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; sangerseqR = derive2 { name="sangerseqR"; version="1.18.0"; sha256="1dw3s011w0pir3i9zz3b62qx4frwkw541k569w1qhl0z66qidmgz"; depends=[Biostrings shiny]; }; - sapFinder = derive2 { name="sapFinder"; version="1.20.0"; sha256="14s9iavhw3bjvmpnkmvwvzfgg7gppjlhp908nrhnjhswz9fpiaa0"; depends=[pheatmap Rcpp rTANDEM]; }; + sapFinder = derive2 { name="sapFinder"; version="1.20.1"; sha256="1yg99gibx8nc8r873y26cbcm5bjh008rhszxykpdbbgl8xfsclv3"; depends=[pheatmap Rcpp rTANDEM]; }; savR = derive2 { name="savR"; version="1.20.0"; sha256="13bwq2a2pygdkmhrcmvz525wsi5i01j911711zgs6x93wj20b2w7"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scDD = derive2 { name="scDD"; version="1.6.0"; sha256="12wg94cb5rhlzwhq1lkkmypcwpj57b59s62in1g1n5mrdza5h16d"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.2.0"; sha256="1bqywn234c5dmqlminkrzl9sj95vh5aw37zl2x5z4jcz0dn812f2"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.4.0"; sha256="1qkjfpvl6j385hal7chjh97aaqk2khja430g87h5a2hblqzjqg0v"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hashmap magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; - scater = derive2 { name="scater"; version="1.10.0"; sha256="1kwa9n70c5j0xcj6nkmlkzjr63cnj78mp8nhg58n07fq1ijm4ns3"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 Matrix plyr Rcpp reshape2 Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment viridis]; }; - scde = derive2 { name="scde"; version="2.10.0"; sha256="1h0qvvlzd597a2k4ppxqzj9n8zq9w22cgba2qw7v225azvwalimx"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scfind = derive2 { name="scfind"; version="1.4.0"; sha256="0g9jx38b7gpv226f4mhhbhikiw4pmy8k014yr3yj10612yc9wpai"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; - scmap = derive2 { name="scmap"; version="1.4.0"; sha256="1hd2b0dkn2d4wvnxb2cw3kq48d11a06c0d26mgzhfzvsy9cc8qzf"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.2.1"; sha256="1l5gw0zxy9vhvqqknnaakawbnhzz8rdanw9nkz02qdbqph39vqqw"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.6.0"; sha256="1347gwwn8952lf9ham2b77x033wqbb7dlcgdn6pmix3563bdkcw6"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; + scDD = derive2 { name="scDD"; version="1.6.1"; sha256="0dp2awajd5281dwpbs0wb8ij2pq9l60p0b80xhxrb41m5qybcri8"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.2.1"; sha256="04bk4kzs42mi022qr8whngkqxapngnvpxifd0m60r57skz3v6yqa"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.4.1"; sha256="1kl1ik1wd3cq7h2njzdnzs9r26qnim4r63c86pfbfymz23n4aqns"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hashmap magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scater = derive2 { name="scater"; version="1.10.1"; sha256="0rijhy7g5qmcn927y1wyd63la1fhyar9fv1hccsqd23jd98yc55a"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 Matrix plyr Rcpp reshape2 Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment viridis]; }; + scde = derive2 { name="scde"; version="2.10.1"; sha256="1n1r08wqx1bds7lwz2bbksw5l084cmcbgs03jr8s2l92z43kqmm6"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scfind = derive2 { name="scfind"; version="1.4.1"; sha256="07lzjqxvdjjzli8ibqvlndgf9n1x477q1pniv91ynrh6jc8dz8cb"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; + scmap = derive2 { name="scmap"; version="1.4.1"; sha256="1nil8kylf2px6nqjh4lg3fm2mw7j0isynvc6w0lycwj34rzjx3q4"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.2.2"; sha256="19z26ld4fa22ry2pc8nrwx6042im1w4wpkfi9hmgp6bi92aa0vs5"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.6.1"; sha256="0l1x4cjnfjbpx6k55sjqx03555daa6v63rq0rg6b7jpz8xxzwa7p"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; scoreInvHap = derive2 { name="scoreInvHap"; version="1.4.0"; sha256="03d7pny3qkcs279869yry8rkw7js3xyrc8b7p4i7hlpzd44x25a3"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scran = derive2 { name="scran"; version="1.10.1"; sha256="1viyzrwfm9vccsf54c6g7k1dn7skkfx4ml1jy12q67wa20sx8l03"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.10.2"; sha256="07mgilr3gq3lnrm1fjm9zhz4w7970bjhsykln1drqy9gkzj5sn7g"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; scruff = derive2 { name="scruff"; version="1.0.1"; sha256="0m7lab7ac1jvp4y092rsyrr4l40gdrqi92khhkq30261f2fm6cf6"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr refGenome Rsamtools S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; scsR = derive2 { name="scsR"; version="1.18.0"; sha256="11mf5kv8mk1nlfxd081a7dx1v60yf94cg46b5bjflidp3qhrsi9g"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; segmentSeq = derive2 { name="segmentSeq"; version="2.16.0"; sha256="0pljd8hn2vxcsh22wmv53a7wkw3cdxpdv8q4ksfj5mvasa2mmkvi"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; semisup = derive2 { name="semisup"; version="1.6.0"; sha256="0lizf5x3abv4g8j4jxmsbbdiqj4f4gybc3jvw7zz12bd3fsj3c1i"; depends=[SummarizedExperiment VGAM]; }; seq2pathway = derive2 { name="seq2pathway"; version="1.14.0"; sha256="1zr6z9kgsvlcvb6fw2r39kx4jm3dxlyv7z5l9p0lkdykfnm313y8"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.4.0"; sha256="1g4nh95h9njihxjxga2bnn9bhzmwxd17zk6cjdv3b818zs93h2yr"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCAT = derive2 { name="seqCAT"; version="1.4.1"; sha256="1qn5l66qipclmcdnfy569px5wrji0mzmfgg2h6ngi94333649lxv"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; seqCNA = derive2 { name="seqCNA"; version="1.28.0"; sha256="1qf76zslj54g6bxll5bi9kqkph1hb5b1b2yg9qr34ywiq4cw7i8i"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; seqLogo = derive2 { name="seqLogo"; version="1.48.0"; sha256="022vr9ydwcivs7rw7kwj73gfk5gc7ckwa1q66vhd4kw9ylh70v68"; depends=[]; }; seqPattern = derive2 { name="seqPattern"; version="1.14.0"; sha256="0di83qi83mrlw7i12khsq55d03hlazcywaa9m9pki1sfhafpq733"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; seqTools = derive2 { name="seqTools"; version="1.16.0"; sha256="0dcql2pmgpaa5vin1zzhx472qm90rw962pd3pw32ispn02yw0f2l"; depends=[zlibbioc]; }; seqbias = derive2 { name="seqbias"; version="1.30.0"; sha256="0jwlwqa1z2scnaqkrz5hmmakrjaajf4dwd875s7pswvacygiy859"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; seqcombo = derive2 { name="seqcombo"; version="1.4.1"; sha256="0046www9rl5lswcjn6friijd5plj0p7bfg0y0qzqsz7gqpm3nj58"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; }; - seqplots = derive2 { name="seqplots"; version="1.20.0"; sha256="08aa5ms9rdkca20yzrj4a45q4ns7qc8s068rf8k9xrhkknc8f06h"; depends=[BiocManager Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; + seqplots = derive2 { name="seqplots"; version="1.20.1"; sha256="0hp3x8gdw65wc73hc1rcxbaqypq2zd50axsvcviqfgdv2dcb2ph7"; depends=[BiocManager Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; seqsetvis = derive2 { name="seqsetvis"; version="1.2.0"; sha256="0wzgka604d6dgfqxmgqbc99441xnmywfcbnl22mx9r332y1wkasr"; depends=[data_table eulerr GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; }; sesame = derive2 { name="sesame"; version="1.0.0"; sha256="01qxdnpkilxv18fpl3rizxri2l7crs62z8nd7ywhxfm6g4ch5l1z"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest S4Vectors sesameData wheatmap]; }; sevenC = derive2 { name="sevenC"; version="1.2.0"; sha256="1p2xkv0n8hl9s4dlg54wgry73vnnlzylwximhan2ymnp3hgbg4j0"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; sevenbridges = derive2 { name="sevenbridges"; version="1.12.3"; sha256="1cwrqgixm6l83737fsdycqqyrap7xph8xp9m45hpcgh35z4d9r1y"; depends=[curl docopt dplyr httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; shinyMethyl = derive2 { name="shinyMethyl"; version="1.18.0"; sha256="0dzg1idkdy4x9h3z5yashrb03ad8ncjxz5j05jlaxx6k4aa7z8j8"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.20.0"; sha256="1asi5v38xfyq58nyamgjqhizylv3k67rx3sv7mgiz8x22b6b4526"; depends=[mixtools rTANDEM shiny xtable]; }; + shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.20.1"; sha256="0lz4jr96g20fbrd34f9km6rj08yb2y09gp7zxnm0inlpdkvb4dby"; depends=[mixtools rTANDEM shiny xtable]; }; sigFeature = derive2 { name="sigFeature"; version="1.0.0"; sha256="0kjf4ss0baq4p7nn305szpvpdssagndxjmggdgfm6mfjsgfi5nj1"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; sigPathway = derive2 { name="sigPathway"; version="1.50.0"; sha256="0pygrla2q2151981gshzv51jnj60h1df3vby5gsxqvxn2pdr4bv3"; depends=[]; }; sigaR = derive2 { name="sigaR"; version="1.30.0"; sha256="1vlmd6rqdhz9vzvjidxrq7k9vbbp1c82qspkmdxd9nkycyjjp5cg"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; siggenes = derive2 { name="siggenes"; version="1.56.0"; sha256="0cjlb5r04x15xkhk00i3wvpx21kj0k29pn0mj3whwqk31zznnk1b"; depends=[Biobase multtest]; }; - sights = derive2 { name="sights"; version="1.8.0"; sha256="1yvncmk7hq3ws0c24dmbygi0amprw0n6agy350yzlkcdlis9p0b7"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + sights = derive2 { name="sights"; version="1.8.1"; sha256="14xch1qaqs4wcwgpys916r2ih3c150my1fqg9qr9qws9m1gbf7mn"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; signeR = derive2 { name="signeR"; version="1.8.0"; sha256="1qpaa8ag8lv9s7340fdk3k3qc2jyq4r8268rvxb038zdrv7nzvv4"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; signet = derive2 { name="signet"; version="1.2.2"; sha256="18v5j9bdpyh1krmbpw6byhyq49cj8msq2mibq50nksmsr648h86z"; depends=[graph igraph RBGL]; }; sigsquared = derive2 { name="sigsquared"; version="1.14.0"; sha256="1y6h3z5mnww2f26hw4a09qiwpgij89bixf3ak5b253apkwd4bpi9"; depends=[Biobase survival]; }; similaRpeak = derive2 { name="similaRpeak"; version="1.14.0"; sha256="0wf24nk2vibspqdkgw1a55xhnxs1ygshi548ms0lswkprrqcllg2"; depends=[R6]; }; simpleaffy = derive2 { name="simpleaffy"; version="2.58.0"; sha256="0bry0d2vw0w2rrpnmfm1kl5v4rdclypmy33jvs9l43vd6vx2ra9s"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; simulatorZ = derive2 { name="simulatorZ"; version="1.16.0"; sha256="19xjhrjwxlpygvv7xs752jsvdnqwzj742jkwzsz2nzwkixkw41hf"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc SummarizedExperiment survival]; }; - sincell = derive2 { name="sincell"; version="1.14.0"; sha256="1526qjpbd7rqjjicyii18f2psqqcllbc85i5zrg7r8vx2fmr4p85"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + sincell = derive2 { name="sincell"; version="1.14.1"; sha256="0id0m6pkx7myg32m5ydwjhmhw5ighlzpi2hksp23sb0ji02y7iyv"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; singleCellTK = derive2 { name="singleCellTK"; version="1.2.3"; sha256="1n0gxrj7wshzxpqwsmsicrhdf4q45afywqdc59yy2fxm440s0w50"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT enrichR ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SummarizedExperiment sva]; }; singscore = derive2 { name="singscore"; version="1.2.2"; sha256="0a32k23l26vjgag7vgv21n9vl8qjy6asrq7ms22wiw9lmg2qkyyc"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; }; sizepower = derive2 { name="sizepower"; version="1.52.0"; sha256="082hfzw8348fra6fr1gli5cqjnrg3bgyx28ccy66jzxvrijm2qfl"; depends=[]; }; skewr = derive2 { name="skewr"; version="1.14.0"; sha256="09132dwp8h3wdrf0agyc0vmby5z7c2hd3px4jrp9vgi2x1849mvn"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.4.0"; sha256="1481kx3xiyl7rzd27dd9mh8jqvnalk54bwbw2yvlvmdrih64p8i4"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slalom = derive2 { name="slalom"; version="1.4.1"; sha256="0kb4y590cdph90k27av45jy889i3s1jarlhj57lyg8g14sr9sxq6"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; slingshot = derive2 { name="slingshot"; version="1.0.0"; sha256="0nrqzsjwyk78cahw21x4i5lqac7h85k6nrq045nq4jmxyc977li3"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; }; slinky = derive2 { name="slinky"; version="1.0.0"; sha256="1b4pam8ajcc1zz1gxdz1gcjxrv75b60mwwhhvcfin3g9xfmgnkc3"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; snapCGH = derive2 { name="snapCGH"; version="1.52.0"; sha256="15fx1ryc6ab1aia768wpp8zhggfz2l9vildhkjh8chwaam1qd610"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; snm = derive2 { name="snm"; version="1.30.0"; sha256="1qjd7g6c03rygp95cpry1m3yi83lyd57zp94whaymfriz39dx2i9"; depends=[corpcor lme4]; }; snpStats = derive2 { name="snpStats"; version="1.32.0"; sha256="1pplx4pf9bqi7v5v1l74yknc1s61carvbqkf327ky7vbvp0bck33"; depends=[BiocGenerics Matrix survival zlibbioc]; }; soGGi = derive2 { name="soGGi"; version="1.14.0"; sha256="0v0hvxadqsmscb8h0zy8xi4336pxha2vj5xk03ms81734jaj6adj"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.6.0"; sha256="05ymzk72h4ff5sr80mcsjkhybvcam3d873hp5a12k2k5xw4ll0l9"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.0.0"; sha256="1c41fzisd42972kz4wh8vcwxxq00l32ahv5gmsj2qnrqq0j0x01i"; depends=[glmnet huge MASS Matrix parcor]; }; - specL = derive2 { name="specL"; version="1.16.0"; sha256="1dgnnrdmpxwjvf30ayfbvgk905j6da9i32qz2fii0mpm6h5d8imm"; depends=[DBI protViz RSQLite seqinr]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.6.1"; sha256="1znhv5j4dijwiq5rdslvgrmzdh0cbc6mnx41a5njx9zkfgrfkw6j"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.0.1"; sha256="01apq9p2hqivc0va5rpl3k90ipgr1i9a228r6b8wygxxy62dqphw"; depends=[glmnet huge MASS Matrix parcor]; }; + specL = derive2 { name="specL"; version="1.16.1"; sha256="12g6hp2x89ydv1ip88dmn48wgawhrpn39sfyrf59pw638gy4g4fl"; depends=[DBI protViz RSQLite seqinr]; }; spikeLI = derive2 { name="spikeLI"; version="2.42.0"; sha256="055zbrbh6wf3vvnc9p8px2ffz9wdhdg0h96260r7c72ax3v6wi5g"; depends=[]; }; spkTools = derive2 { name="spkTools"; version="1.38.0"; sha256="0rm2vlzid3wjm1g1kzmjklga1gcf852aznhxb1xr50v8drivkkz9"; depends=[Biobase gtools RColorBrewer]; }; splatter = derive2 { name="splatter"; version="1.6.1"; sha256="1kw9shzqwph44q2fksgp79mrjq23j3806clc4xydw3ys2w4kspj8"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; }; @@ -1565,83 +1565,83 @@ in with self; { splineTimeR = derive2 { name="splineTimeR"; version="1.10.0"; sha256="15dzhijkhpy7d8hwif59bic83fk6fnyjpp4qi7y7vwq139j6yaj2"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; splots = derive2 { name="splots"; version="1.48.0"; sha256="0s10ha17p4yf6id0h0r0a2fk992jp4ah7v8ani689zy6pcc0w34d"; depends=[RColorBrewer]; }; spotSegmentation = derive2 { name="spotSegmentation"; version="1.56.0"; sha256="06b4dwjll21i13ag5f2si5499gc6h63b5rnlz372pg95idwxsqbh"; depends=[mclust]; }; - srnadiff = derive2 { name="srnadiff"; version="1.2.0"; sha256="09gqa8z9s8md8nrdgff1a252nfw4ssn937rms4cj7k66zdxgwdqc"; depends=[BiocParallel BiocStyle DESeq2 devtools GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.2.1"; sha256="1cm2xjj0wd6ll45aa1gq4lzg49sr4v3zni3x0mgma6pkj2prcbwf"; depends=[BiocParallel BiocStyle DESeq2 devtools GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; sscore = derive2 { name="sscore"; version="1.54.0"; sha256="0anpfqvv6as5i28bb0i2h86p51m42ch4gzap5lcxia97lzvxh210"; depends=[affy affyio]; }; sscu = derive2 { name="sscu"; version="2.12.0"; sha256="0y41krw0r0kmlp32b7cmlwf5qpncha8j357mx9sr3zvm52dphlpp"; depends=[BiocGenerics Biostrings seqinr]; }; ssize = derive2 { name="ssize"; version="1.56.0"; sha256="13bc5hbnqqxr16pqw0waq29mpgrf4sys4kg63np2a4hpc6l2nrqk"; depends=[gdata xtable]; }; - ssviz = derive2 { name="ssviz"; version="1.16.0"; sha256="1hpvpiainfg382wbm0zz8libs9vfqdi5c1wa17wi75aah1in6c6p"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.24.0"; sha256="0zbrsbdfca7y87cii5iyipf0g7rn7f3h8blzbn4n1ir8khrl8qs1"; depends=[cellHTS2]; }; + ssviz = derive2 { name="ssviz"; version="1.16.1"; sha256="01wq3y9xf4g5d2df6j2cckwk9rm1y6ya39g33c0m13jk3xrxvcwi"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.24.1"; sha256="08pac19nsyb8cfwbsc31m8daiig8p1px4y4rjc00ypvari2hnl2c"; depends=[cellHTS2]; }; stageR = derive2 { name="stageR"; version="1.4.0"; sha256="063mprdjjvys09cxlgrd930r96i470z30h00pf0h15g5h4w02jak"; depends=[SummarizedExperiment]; }; - statTarget = derive2 { name="statTarget"; version="1.12.0"; sha256="0fxy1s1d9l7jrhj7rs1hvam5r85y608143sb2d17fhm0x77bs78f"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + statTarget = derive2 { name="statTarget"; version="1.12.1"; sha256="19b8b00kcd6p9b7g4n3jaf8z80fz6y5d7bil8m8bj7ldr2l8dqr0"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; stepNorm = derive2 { name="stepNorm"; version="1.54.0"; sha256="16sn793zj06dh69cwzx3vfjkx4gs3dy6x0apyh01vwhnqkani4vl"; depends=[marray MASS]; }; strandCheckR = derive2 { name="strandCheckR"; version="1.0.0"; sha256="0pmw6iwynpy6mdfh8mb939100715mpwy458i6w6sw1pjghlykrzq"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - subSeq = derive2 { name="subSeq"; version="1.12.0"; sha256="065r2856lrdp43z3lhzr5cp445g7r68yjfxrwxr05dic3yln4fq6"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + subSeq = derive2 { name="subSeq"; version="1.12.1"; sha256="151fa343n1w7mbrhqcf2f2bhh0s8km0a8lcx534avi1mnp539ql9"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; supraHex = derive2 { name="supraHex"; version="1.20.0"; sha256="0p27h8xg104ip8lwasvac74hjj9582xc85q06q0n8lr660chfx2b"; depends=[ape hexbin MASS]; }; survcomp = derive2 { name="survcomp"; version="1.32.0"; sha256="1f6vz8fbifa5lsywxcqdak5gb7fvz6rvds5a7bvdginjy1zindw9"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - sva = derive2 { name="sva"; version="3.30.0"; sha256="1xf0hlrqjxl0y3x13mrkxghiv39fd9v2g8gq3qzbf1wj7il6bph3"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; + sva = derive2 { name="sva"; version="3.30.1"; sha256="0czja4c5jxa0g3fspi90nyajqmvzb29my4ykv2wi66h43f5dlwhq"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; swfdr = derive2 { name="swfdr"; version="1.8.0"; sha256="0hib9mb1yrfl3hqddkqws32ninyc8ylzw8gd4a0sv06l16ks8b4m"; depends=[dplyr ggplot2 reshape2]; }; switchBox = derive2 { name="switchBox"; version="1.18.0"; sha256="1s49vi0vyh0bmrc6marn69hi9ln12j3kyjkkm2z5fpvv3rvxhgw7"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.8.0"; sha256="0vcypblf3d3sfsklmk88pdjyinim7vqwbgp0rqgz4whyi9c4m2i3"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapter = derive2 { name="synapter"; version="2.6.0"; sha256="0l1lmrn4ilp990675msgs96kcgb3gjwbx9g7jiffaprgs3dpwkgj"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + switchde = derive2 { name="switchde"; version="1.8.1"; sha256="1ydc9h62iyfz0786c5zhz3189p2f7sf3z6fjlvqwjqxva5j0f12b"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapter = derive2 { name="synapter"; version="2.6.1"; sha256="19rf8kkqf070ldhnrdi3xl23j2slv4qadw9cx8wvc4p994f2abj9"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; synergyfinder = derive2 { name="synergyfinder"; version="1.8.0"; sha256="1idc0lnjw8zx6nih1hrzfq9h40zkbdv0iv9si214wx4ynf0w18iv"; depends=[drc ggplot2 gplots gridBase lattice nleqslv reshape2 SpatialExtremes]; }; - synlet = derive2 { name="synlet"; version="1.12.0"; sha256="07rz4jx6n8cmzzp3j0zfah1z0l0r5xd7raclzvwh0gvhg97bqlz8"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.16.0"; sha256="0l26q8zjdmzg84g7f25gv9z60sykybahlpg5bg9bmpbg5lzcsx04"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; + synlet = derive2 { name="synlet"; version="1.12.1"; sha256="13rghqqbkxni121ds0slf6cnj2g5zbm3sbbcli95z7mxy2wn3syg"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="1.16.1"; sha256="0qzydz87rld2nhwzbfgrw5jfgh8maa9y54mjx9c4285m11qj2shq"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; tRNA = derive2 { name="tRNA"; version="1.0.0"; sha256="1kzl79q0zim9y7px0dirk41qay96nl2bz8sw76nx56pr1d5jh245"; depends=[assertive BiocGenerics Biostrings GenomicRanges ggplot2 IRanges S4Vectors scales stringr XVector]; }; tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.0.0"; sha256="0b6h2xzxyl3kh1h8fijm5l0cqy7364p5l0s604fvhnaxa6n3y1ds"; depends=[assertive Biostrings GenomicRanges httr IRanges S4Vectors stringr tRNA xml2]; }; tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.2.0"; sha256="1pcnwlxbw2g4398y4q94m6z7xsl492hik4z57xgjcri35y3ma06x"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges rtracklayer S4Vectors stringr tRNA]; }; tRanslatome = derive2 { name="tRanslatome"; version="1.20.0"; sha256="0aa2gd1mp5lzp62vl0556i7q761jyi02ls04nw175fbq6381l2vy"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - tenXplore = derive2 { name="tenXplore"; version="1.4.0"; sha256="1914n0sdx9nvrja6mpx4hm5x9wzp1c1n0v4a43p4xwigj8qvgrvz"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + tenXplore = derive2 { name="tenXplore"; version="1.4.1"; sha256="18bg0wc7y8lafi38mq83qqhrd03wyyk856fa2axinixgn2qid3pq"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; ternarynet = derive2 { name="ternarynet"; version="1.26.0"; sha256="0xar386wy1viks44s2gyiakmvy5d1k2qc422zn74nc0wwgky0jmc"; depends=[igraph]; }; tigre = derive2 { name="tigre"; version="1.36.0"; sha256="1hyl4d1111bs6bgjpy3dwkfj9yi11r07hwsf2jn4iqcmr9l6g0rz"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; tilingArray = derive2 { name="tilingArray"; version="1.60.0"; sha256="0ak32w49adrrh6xaf20g48xnsxr33d3irng3lbv03y2al812wpha"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; timecourse = derive2 { name="timecourse"; version="1.54.0"; sha256="1cpmcbjwsh2mn4c0bgpvcq5da4cngsznfvz7r6cpma7iivqam1jz"; depends=[Biobase limma marray MASS]; }; timescape = derive2 { name="timescape"; version="1.6.0"; sha256="0wnk4iwy8ji4xn1cyh257byxfvh5njd9z08hl5f74k1ni94llkp6"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; tkWidgets = derive2 { name="tkWidgets"; version="1.60.0"; sha256="17z04pqys4nhs0c6phffkwj2yw34cajpfbgx70jsd0dba125pzh7"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.10.0"; sha256="0fxgfvgfpssw160bmbb34xaz3123rxi7wzf9bpiml7yrdvqxk2wd"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + tofsims = derive2 { name="tofsims"; version="1.10.1"; sha256="0wgpl4az21zbixjl3ngwpxq81i86yhd41lhhnphrvrwnl7n7gk8x"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; topGO = derive2 { name="topGO"; version="2.34.0"; sha256="1j1jcd16j564kr6qz28140fzmnh9xasi84v1c1fi98sqv30zq9bh"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topdownr = derive2 { name="topdownr"; version="1.4.0"; sha256="03vpg0f4h8jff6p9p06lp76fiyhhishly023x9aqbjgrr463d6pl"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + topdownr = derive2 { name="topdownr"; version="1.4.1"; sha256="19v8m0lr1y69x1b3k01vlimfi6nzqgjg83ifc7xvzzqfsl45z09w"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; trackViewer = derive2 { name="trackViewer"; version="1.18.0"; sha256="031bamc10gfwdk0vxcrb75yv9qxrk2n5sfwnmsfvbv7n9pdkg7lp"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; }; tracktables = derive2 { name="tracktables"; version="1.16.0"; sha256="160zh73yripvd150jfwm1xpk1amrg1qqjcyl8wwclpss0ks04ayb"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - transcriptR = derive2 { name="transcriptR"; version="1.10.0"; sha256="0hxgh054kfygq9dfaq94sbzbssrd1sarag9ribdvxby7r2r1818s"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptR = derive2 { name="transcriptR"; version="1.10.1"; sha256="17m1i36jj7fdh4qqd29zia68q7yjhxgh47xndcbgbik78pfnnig7"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; transcriptogramer = derive2 { name="transcriptogramer"; version="1.4.1"; sha256="1qd447glnwk3ysxnfjyn5i2smyq79mn6qgsa0klrgr3v1909ib57"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; transite = derive2 { name="transite"; version="1.0.1"; sha256="09dwlgysgiyz8svfhfap17q3j7y8nh1bq5grq199dvrrs8ai8k80"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; traseR = derive2 { name="traseR"; version="1.12.0"; sha256="1bf2cblagqkwsc66l9820kb7yh05bk62k0rplnqznnl36i5fw428"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - treeio = derive2 { name="treeio"; version="1.6.1"; sha256="013kvbjkc508vmd7qnq1adl5bgw2j9l685fyl2w22hngwixc8qjg"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; }; + treeio = derive2 { name="treeio"; version="1.6.2"; sha256="0fvyj3m8yzq94cs2nhmmq6qvf7qqccxan2qkq764a9qlfrrpwa2c"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; }; trena = derive2 { name="trena"; version="1.4.2"; sha256="1rrbkjizc4glp4ql30wn6ijmym4vxl3xda3ffy02maab1vg07mjp"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMariaDB RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; }; triform = derive2 { name="triform"; version="1.24.0"; sha256="12ca24pv1r5vbw3rq345jqg7x3prrbsxk6445zikpzfblwmw0b4s"; depends=[BiocGenerics IRanges yaml]; }; trigger = derive2 { name="trigger"; version="1.28.0"; sha256="0wi8lk1ld21h1i0i31c858a0sgisg4ak11kyxjmsh9lyhfzayvwq"; depends=[corpcor qtl qvalue sva]; }; trio = derive2 { name="trio"; version="3.20.0"; sha256="0fz74p4xj19mp2bbrlcrn2gr0yg7hhk0d1a2dy2k2shg7vwr15lj"; depends=[]; }; triplex = derive2 { name="triplex"; version="1.22.0"; sha256="1fh7446v07bdhj7babj3gjq4n4zk1y7r37fs30r2cgc9lhqyccr9"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; tspair = derive2 { name="tspair"; version="1.40.0"; sha256="1anz7by0hg51ywk9q49xjaqm8agiqdwd6rnf1mp6axph1wjfhkjm"; depends=[Biobase]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.28.0"; sha256="0gygl2pv25ar2psqdb5vdksj8f4d8kqim7wl68lh2ab8mp92cpwd"; depends=[cqn edgeR limma MASS]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.28.1"; sha256="0imnscn9yf79jciq7zdzasdf777cq4sqvhnhvsy6y69vzmhi5952"; depends=[cqn edgeR limma MASS]; }; twilight = derive2 { name="twilight"; version="1.58.0"; sha256="16vj02kxlfii0r8cdvbd4q6yqm54znn2i0697dmdfmrqbvn9rjky"; depends=[Biobase]; }; twoddpcr = derive2 { name="twoddpcr"; version="1.6.0"; sha256="1j4xb6y2hnrvaspv7lpirx62801rq0y0gkqdgy87qkphqsf4n44z"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - tximeta = derive2 { name="tximeta"; version="1.0.1"; sha256="02h2bc5ram7lmhpmv1m3lpir3zs18kp2gpiz9akpg7bf0l628y9d"; depends=[AnnotationDbi BiocFileCache ensembldb GenomeInfoDb GenomicFeatures jsonlite rappdirs S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.10.0"; sha256="0za2js8hqjgz8ria09cglynffj4w9vrzg85nmn1xgpvmc1xk813h"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.8.0"; sha256="11fn71njy6fphn9by5m41hjhqcwmv223fy0xrwabgy5389c7y9lh"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + tximeta = derive2 { name="tximeta"; version="1.0.3"; sha256="10fxda9hn1nfz93mni0fv2snpqkr48x73ffjkd5hv4bwqv26cma8"; depends=[AnnotationDbi BiocFileCache ensembldb GenomeInfoDb GenomicFeatures jsonlite rappdirs S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.10.1"; sha256="16wp09dm0cpb4mc00nmglfb8ica7qb4a55vm8ajgzyagbpfdd44l"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.8.1"; sha256="1z6vlcgs83pc7388c6jwpm9dgv9rr95gsksqy5gaiyy0pa0bga8j"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.18.0"; sha256="110kb1g1kkfgk3nw099wyaww8l2jk3kk41bsz3gmbb2jni9v0ykx"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.0.1"; sha256="0xix65wr4m2vq45kmdkphpzx7mfw43i7xbd5s5da2mz1a0fzcg3k"; depends=[ape BiocGenerics Biostrings ggplot2 ggseqlogo ggtree gtools processx Rcpp Rdpack]; }; - variancePartition = derive2 { name="variancePartition"; version="1.12.0"; sha256="15nryf165w0wjvfjprp3raxz2r7cq8j0jhcldavnr2x5jzc4df49"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2 scales]; }; + universalmotif = derive2 { name="universalmotif"; version="1.0.13"; sha256="1k7xlp7mgkrsg0lxakhiwzq8jid2s01iaagav1yia9fninkgpp85"; depends=[ape BiocGenerics Biostrings ggplot2 ggseqlogo ggtree gtools processx Rcpp Rdpack]; }; + variancePartition = derive2 { name="variancePartition"; version="1.12.1"; sha256="18z6g633scn8p5s17nr02832i8kh7gvdx8pz1ggx4p5jpdh562v1"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2 scales]; }; vbmp = derive2 { name="vbmp"; version="1.50.0"; sha256="08iyryhmahmm1p93c0kgvknf9gkd7i4l4jd3b9a234vwx5xy0zx2"; depends=[]; }; - vidger = derive2 { name="vidger"; version="1.2.0"; sha256="1b0r9wm7sibhs34my4zmwhfim0p8iv7izjv4hp1mlyxsjk30bp7a"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + vidger = derive2 { name="vidger"; version="1.2.1"; sha256="1gz2v4zg6ry06msmxrr3f47i4gc2sfijrbkd0l5x7crp8a2mkcm3"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; viper = derive2 { name="viper"; version="1.16.0"; sha256="0pi9s37xw03pkqmsyqnigzfjmq9llk0gwh92ply07mbppldssrwc"; depends=[Biobase e1071 KernSmooth mixtools]; }; vsn = derive2 { name="vsn"; version="3.50.0"; sha256="1g6qkpykw99jm2wv2i61dg2ffwk0n8fm4s5pm2q4c024vw5c9b69"; depends=[affy Biobase ggplot2 lattice limma]; }; vtpnet = derive2 { name="vtpnet"; version="0.22.0"; sha256="03f96286lvhy7wlpi39awf5fjx1b40jzjp5mslfgpwx9gvk0kzdw"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; vulcan = derive2 { name="vulcan"; version="1.4.0"; sha256="0w9cmfn7m2yn98jrgf1ixkchd2jmfinpbxhcycdfmq2yihla3l3v"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; wateRmelon = derive2 { name="wateRmelon"; version="1.26.0"; sha256="0ymchg3nk89dm92hqksq7cmvwr2a7fxr7z4ymfigj6ifw2r4575s"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.16.0"; sha256="1vzikjs86p0gw0xhcygjv3c5adyyvqnys6g9xqd6519zzp14v4hs"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.16.1"; sha256="1lxi7yn2l9gifqx08mkfc7mswb1lvca5di48g5w6pghf1jdp0rkp"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; waveTiling = derive2 { name="waveTiling"; version="1.24.0"; sha256="023d329nk0w7wm8zplhqw7qwc8jwlscxkf8kbafjljrzpzwvh8an"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; weaver = derive2 { name="weaver"; version="1.48.0"; sha256="1hys2gjr353lb798anamfg6mhv8hadh90qs9sc99zi96ps6c24hf"; depends=[codetools digest]; }; webbioc = derive2 { name="webbioc"; version="1.54.0"; sha256="16n6wc9q51wfpmh9y77p53sqdqdd8pn50c67vf6h4n7gv5wgnpwi"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; widgetTools = derive2 { name="widgetTools"; version="1.60.0"; sha256="0mz69pdr6q69avsvs6r5ncdkdmgwfislpil4v18dsflw4j454gwf"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.6.0"; sha256="1xbn8ifqbb19ba9x3m6ir1ajqq890mv8jwfbm62zgdr1crs572fg"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - xcms = derive2 { name="xcms"; version="3.4.1"; sha256="1gmmnmxnzzzn502zcav4najxb9bd4fhk3d53bfgjvkibbnxyikl9"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.6.1"; sha256="12fhbskkjwv4d9bdy3gab8n9pcf7qpwiwgx0248as445vfw8dil3"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + xcms = derive2 { name="xcms"; version="3.4.2"; sha256="1mqhv87y7316w9a9j50l82yr3cs3f71pj9a5kg90fzg5nc2d0i68"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; }; xmapbridge = derive2 { name="xmapbridge"; version="1.40.0"; sha256="1a93vxrv9brfwv64wpiriwak1chlz6rg25dhcb9hyk2b8j8ky3ag"; depends=[]; }; xps = derive2 { name="xps"; version="1.42.0"; sha256="0x391j5rlihp64k5wslghlrw6vi4xwwjphskvl1k3iffda5yqknb"; depends=[]; }; yamss = derive2 { name="yamss"; version="1.8.1"; sha256="13pln09j08fjsr7bj17apy4j0sr79n7jzshi8jbnz57jil7k6ia9"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; yaqcaffy = derive2 { name="yaqcaffy"; version="1.42.0"; sha256="192n1zvd54nm9q71vyb6dcr7ia6givf4bjwf6542jjig085lwhxk"; depends=[simpleaffy]; }; yarn = derive2 { name="yarn"; version="1.8.0"; sha256="1vy8ilnp62bckq587ls42mp1lhkxq9if2l7jlqh12a8bf1848mrg"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.4.0"; sha256="12g9q9yxyrjldlhr6n7g66n8mlflvhfyadb8sc1qdwp9y6prvxbk"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zinbwave = derive2 { name="zinbwave"; version="1.4.0"; sha256="1w5j8f4py6yfalihkzbssy6rk5kdm2gkhpghnz9wlsczbvh6cnh8"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zFPKM = derive2 { name="zFPKM"; version="1.4.1"; sha256="0rvfrjxxvfng9fxxn316gm96v4rahx62vlk3axr2bzjbi1r4s8v5"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zinbwave = derive2 { name="zinbwave"; version="1.4.1"; sha256="0856rypmmir52rr9w8dy3pg8akqzq326sbk4awn4ik14r9zqpxd2"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; zlibbioc = derive2 { name="zlibbioc"; version="1.28.0"; sha256="0bjvzy24kab7ank02cc1qk2ikcz4dllgf66wpsdl0d3zp4gn3l2h"; depends=[]; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 6d3a455ca5fc..207f9a9df999 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2019-01-03"; }; +let derive2 = derive { snapshot = "2019-02-07"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; @@ -48,7 +48,6 @@ in with self; { ALA4R = derive2 { name="ALA4R"; version="1.6.0"; sha256="1b3j0k5k4kr38df6rdqfm9pyhgzc4xc70fxf83d8061xjf4rq0wk"; depends=[assertthat digest httr jsonlite plyr RCurl sp stringr wellknown]; }; ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; ALEPlot = derive2 { name="ALEPlot"; version="1.1"; sha256="0bakl8a7xda7vh9zsc66kkd5w5jmb5j28kfwpfq2ifvk2mrakr3w"; depends=[yaImpute]; }; - ALKr = derive2 { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp]; }; ALS = derive2 { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; }; ALSCPC = derive2 { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; }; @@ -84,7 +83,8 @@ in with self; { ARTIVA = derive2 { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; }; ARTP = derive2 { name="ARTP"; version="2.0.5"; sha256="0lwvhf5lamw28sd41vrhyin8ab92rl93j1ahk0aacwvnikgmfkpj"; depends=[]; }; ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; - ARTool = derive2 { name="ARTool"; version="0.10.5"; sha256="1l219j5zp0sck0l326fi8nfsw29d83h18ahm4gs4bknfbbv895ic"; depends=[car dplyr lme4 magrittr plyr]; }; + ARTool = derive2 { name="ARTool"; version="0.10.6"; sha256="1wln9s3j3bs5svykp3as483q61fvlfsdcjlb8cs3mzw43nlp591i"; depends=[car dplyr lme4 magrittr plyr]; }; + ARpLMEC = derive2 { name="ARpLMEC"; version="1.0"; sha256="0irgyf8acg1qn60npchvs258d0cf6cxm53xw0s8qg8iyqns52p75"; depends=[gmm lmec MASS Matrix mnormt mvtnorm numDeriv sandwich tmvtnorm]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.2.1"; sha256="0f0bl1fxda012d8pgqpaqb80m0nn490xih3ddscfqgb87zgrp4sx"; depends=[sp]; }; ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; }; @@ -99,13 +99,13 @@ in with self; { AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AUtests = derive2 { name="AUtests"; version="0.98"; sha256="0m2nl55qfwfzlf92f43b9q75xqvrlx7qzcz6qlnjbjcr80s0qj9q"; depends=[logistf]; }; AWR = derive2 { name="AWR"; version="1.11.189"; sha256="0q9ss6cyx8vv85zif5v4s2bkv0amhyvzbs41mjjgmwb1csg53jgd"; depends=[rJava]; }; - AWR_Athena = derive2 { name="AWR.Athena"; version="1.1.0-1"; sha256="0p701jj1683npsxa3l5g0cd35yvp9823kadpw9fjvn9ixdfy1nk1"; depends=[rJava RJDBC]; }; + AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.6-1"; sha256="0kp5g9fcjdx5904l6b5l03h80hiqq12xx3jlj67y7w9brr2aj5qr"; depends=[rJava RJDBC]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; AbSim = derive2 { name="AbSim"; version="0.2.6"; sha256="16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"; depends=[ape poweRlaw]; }; AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5.1"; sha256="15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"; depends=[Biobase DESeq limma Rcpp RcppArmadillo]; }; Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; }; - AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; }; + AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-6"; sha256="1z3rmln63ki2kik9kinbwr9qhr32ggbmh4mm3xqy6di119n47ca9"; depends=[]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; Actigraphy = derive2 { name="Actigraphy"; version="1.3.2"; sha256="0y0ccmxhdfhdmi4k6pbfvnqknkqbgvfsf2qf7z7rc4xpfgym6574"; depends=[fda SDMTools]; }; @@ -119,7 +119,7 @@ in with self; { AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.67"; sha256="0s8vv960pkbccpwlfsg1jsfjnfmq9iy8cj1fak5fn2s60zb7nm0a"; depends=[MASS mgcv nlme SemiPar]; }; - AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.5"; sha256="064mpylzpz7ngqlk637b9ykia4zn7jpcdnxdfp5j84a0fvbm8gx8"; depends=[ggplot2 pracma shiny]; }; + AdaptGauss = derive2 { name="AdaptGauss"; version="1.5"; sha256="1990nd46ib2wkjhi5ypfyw2wq4gh6y5mymy0s3mq99qy2n17b6zq"; depends=[ggplot2 pracma shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; AdhereR = derive2 { name="AdhereR"; version="0.3.1"; sha256="1yggn5bmdblr7d5gy9as1jv9vvis37rcad72w2w4dhm6clfchx79"; depends=[data_table lubridate manipulate shiny]; }; @@ -140,7 +140,7 @@ in with self; { Amelia = derive2 { name="Amelia"; version="1.7.5"; sha256="1mnvms3bgc5i0v7wdmfx7nikr8wxyzmqi36sj2fz4qv5b0mf4zpa"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; AmesHousing = derive2 { name="AmesHousing"; version="0.0.3"; sha256="1fr01ka8x8gdnky6cbd2bjlh1lx71gzq440zsknn9kxvf01s6pxm"; depends=[dplyr magrittr]; }; - AmigaFFH = derive2 { name="AmigaFFH"; version="0.1.2"; sha256="0749j6m8pvdq4lm0n46bn052nxvplh3nvp2miz4hagw8q2p5fsyl"; depends=[adfExplorer ProTrackR tuneR]; }; + AmigaFFH = derive2 { name="AmigaFFH"; version="0.2.0"; sha256="02w492lajmykh9hzrgyq6bvk98hpc37h75vc1w2dzf8d0hjsij9f"; depends=[tuneR]; }; AmmoniaConcentration = derive2 { name="AmmoniaConcentration"; version="0.1"; sha256="05pnwfji9l9az4jvni6jy7cayzg5pbspz82a63kmj6rgibn4ywvn"; depends=[]; }; AmostraBrasil = derive2 { name="AmostraBrasil"; version="1.2"; sha256="06y555gl9g89gygrv1rhg8j1bhb38m09mvvw67wvwhdl56j0fqbd"; depends=[foreign RCurl rgdal RJSONIO sp stringr]; }; AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1"; sha256="1vqpahavsksphxjyhd94dghg9ddskbfbs5vl5qcwl3jkjfvl7lwy"; depends=[ggplot2 xtable]; }; @@ -204,8 +204,8 @@ in with self; { BAMBI = derive2 { name="BAMBI"; version="2.0.1"; sha256="0mmigmgh37jbjnaafnisv7i30nfa605r2k3w22mpg1n3lcjdpmdk"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; }; BANEScarparkinglite = derive2 { name="BANEScarparkinglite"; version="0.1.2"; sha256="0yxsgk4p7i8arjkchsiml6lx97inpmaihb61787vcl8kxyx7v6wr"; depends=[dplyr httr lubridate RCurl readr rvest XML xml2 zoo]; }; - BANOVA = derive2 { name="BANOVA"; version="1.1.1"; sha256="11cvf7wjip1vn5qn9hwxvdh98i8li9ijydfywf2ks2hls2430qbk"; depends=[coda rjags rstan runjags]; }; - BART = derive2 { name="BART"; version="2.1"; sha256="0x7w6kqirs61fdxq0zfyb34glfdj9qv0jhi59qv6y659xv4za4jx"; depends=[nnet Rcpp survival]; }; + BANOVA = derive2 { name="BANOVA"; version="1.1.2"; sha256="04f11394z3zni1fxk60zd61kgy1603nfb81wkkqg8jh4997nhbmi"; depends=[coda rjags rstan runjags]; }; + BART = derive2 { name="BART"; version="2.2"; sha256="0rl0yd1fr04mdrp6ma6mp87nddj62hcmxm28h29d95n8wdhjr7c5"; depends=[nlme nnet Rcpp survival]; }; BAS = derive2 { name="BAS"; version="1.5.3"; sha256="0xf8wd42mlk6dkkiwzf9lyb5fvqmpjsqyzay146d6p2y1zk65lc0"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; }; @@ -224,7 +224,7 @@ in with self; { BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; - BCDating = derive2 { name="BCDating"; version="0.9.7"; sha256="0z3a95sc481p0n33mhg7qlsf1jynbm1vbfds0n03bsjrwvqkzpb2"; depends=[]; }; + BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; BCEA = derive2 { name="BCEA"; version="2.2-6"; sha256="1h1hgr0w6sidxfm58x6xz3i66prk5cxw6ldgfznr28pvrbgi5wsi"; depends=[MASS]; }; BCEE = derive2 { name="BCEE"; version="1.2"; sha256="08jsnsy7l182n0gy2jy0l9a7grr62g57gz3217fzapk2im2q648b"; depends=[BMA leaps Rcpp RcppArmadillo]; }; @@ -235,23 +235,24 @@ in with self; { BClustLonG = derive2 { name="BClustLonG"; version="0.1.2"; sha256="0w35pwv3y00pmi4qjnzii3q44k7lk13x0cmh1zq3cl42gpi31p7f"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.53"; sha256="10ya43ywa188c1p6hkz8kpim5wjpym1qpywan7yf0860fpxywl8p"; depends=[igraph Matrix]; }; + BDgraph = derive2 { name="BDgraph"; version="2.54"; sha256="0gx9i55mfqxgd56a3h81l21qyjdk10j3d1b6fg29l8zs8d2hl0xx"; depends=[igraph Matrix]; }; BE = derive2 { name="BE"; version="0.1.1"; sha256="1ldzj1fvbgmnp0cn7g348md2xskm2q5b7y6l1sm3pa2am8jc7ixa"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.2.1"; sha256="0a6xwczw3d2jnksb5lpf7j859pnyfxcab4kfv4v7lmf9iasbyyf5"; depends=[devtools DT haven plyr readxl rJava rtf sas7bdat shiny WriteXLS xtable]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.1"; sha256="1g92ayc6igz4qsf8g05m5628za4ipl2hy51khar0d54pkys5l1vw"; depends=[BH crochet Rcpp]; }; + BENMMI = derive2 { name="BENMMI"; version="4.3-6"; sha256="07jmf4icij8yb83bf7x0vsaf60gcvdzaijjckv5400xjykpm7scm"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; BEST = derive2 { name="BEST"; version="0.5.1"; sha256="0yx3bkaaly0lriyd5xr7aay4c381a5iwanfixz9v37cmvs64rs4s"; depends=[coda HDInterval rjags]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; - BGData = derive2 { name="BGData"; version="2.0.0"; sha256="1jjzk81ipc7xidk21721pi761c7afnvf3qi91fv21q5ihkg5glvi"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; + BGData = derive2 { name="BGData"; version="2.1.0"; sha256="168lvmcfj9ch2dfp8haykgz8cwmrp1yqn01hbyssqfgpc42lrgf3"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; BGLR = derive2 { name="BGLR"; version="1.0.8"; sha256="15cv5k44yj5cws9jjd70hvrkm8gzn5x4hfx408n2fbqbv289b5jy"; depends=[truncnorm]; }; BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BH = derive2 { name="BH"; version="1.66.0-1"; sha256="14kab6wp0c27d8x4jqyf065p4bj210s9b67c0bfsfjnp29aypn8p"; depends=[]; }; + BH = derive2 { name="BH"; version="1.69.0-1"; sha256="18mckfwxxv8m8rzaz03mg2h6vhaj7y131h6yasfg0s73nxj47zd0"; depends=[]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.1"; sha256="1qygizn2np9amkm1f1332zp9ab9ky423plr9lahgwzdxn1c2c5c2"; depends=[AnalyzeFMRI fmri wavethresh]; }; - BHSBVAR = derive2 { name="BHSBVAR"; version="1.0.0"; sha256="03yzv481k0nsnh36abmqnigmd75x2l63h7m41xllklbwcq4xsx55"; depends=[Rcpp RcppArmadillo]; }; + BHSBVAR = derive2 { name="BHSBVAR"; version="1.0.1"; sha256="0hbj14cwhji4503pq9003xs3z5v7zjvw9slnrhppaxvphap3b9is"; depends=[Rcpp RcppArmadillo]; }; BHTSpack = derive2 { name="BHTSpack"; version="0.5"; sha256="1sz99sgxhiajxca5bx2ns9g9qs9ymsvh8i5882nlp7c78qxmqc4g"; depends=[R2HTML xtable]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; BIEN = derive2 { name="BIEN"; version="1.2.3"; sha256="0p23kahba55gkk6wx10ii6vrni3b7ia2a4jb64ww4kwp86bknx3d"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; }; @@ -260,7 +261,7 @@ in with self; { BIGL = derive2 { name="BIGL"; version="1.2.3"; sha256="0r1la9bxczblpcmr09drp5740bclxzi7zp0nl7hgd2h4chc40iq4"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; - BIOMASS = derive2 { name="BIOMASS"; version="1.2"; sha256="1d9rwgh0ws27yd0p2la7pn49sb71lh9bg4f42fpx448ah8dimw17"; depends=[httr jsonlite minpack_lm msm raster]; }; + BIOMASS = derive2 { name="BIOMASS"; version="2.0"; sha256="16wfkdj5sa694jqxx78p6vlvlbkh80bgi0qx4wadzvhj2y73n4bq"; depends=[data_table jsonlite minpack_lm rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.5"; sha256="0isvqs2bgirxwb7b1dbn70zfx9b4mw7fp33fwmxq0dx6k1r4f87g"; depends=[ecodist nlme]; }; BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; @@ -278,6 +279,7 @@ in with self; { BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; BMSC = derive2 { name="BMSC"; version="0.1.1"; sha256="0dpyb01bmfa9qgrj60hdmbgp0mln96zx7ndiljwz7ylpg8myj8sl"; depends=[BH dplyr ggplot2 loo R_utils Rcpp RcppEigen rstan rstantools StanHeaders]; }; BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; }; + BMTME = derive2 { name="BMTME"; version="1.0.5"; sha256="19hpm8n2y94ibp31g1l2f8pc4ngzic2qam5ksf6680yx75bv66kr"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; }; BMhyb = derive2 { name="BMhyb"; version="1.5.2"; sha256="0sf12xibr22i3pqdb7zay1mmgfnvqxdlimsbd8y5pi4ybiqz8bl8"; depends=[ape corpcor DEoptim geiger lhs Matrix mvtnorm numDeriv phylobase phytools TreeSim viridis]; }; BMhyd = derive2 { name="BMhyd"; version="1.2-8"; sha256="14pv5f621zq5x9i408zjm8k80hcsabkjpdf86gk3ylgw5yqcivrx"; depends=[ape corpcor geiger mvtnorm numDeriv phylobase phytools TreeSim]; }; BMisc = derive2 { name="BMisc"; version="1.3.1"; sha256="0wh17bf1ii6zan09n59cf9257nb60nh08ig01id9k0bvm9f14ay6"; depends=[formula_tools plm]; }; @@ -287,7 +289,7 @@ in with self; { BNPMediation = derive2 { name="BNPMediation"; version="0.1.0"; sha256="0bfsayhhhf60qr8nvs4yhshnb7ank70529abpqdxb506ni67pny1"; depends=[condMVNorm DPpackage mnormt]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; }; - BNSL = derive2 { name="BNSL"; version="0.1.3"; sha256="1918dc73gasac45kzcf4pxvl8iaawzkqdi03ny0napbjr3z8rss2"; depends=[bnlearn igraph Rcpp]; }; + BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; BNSP = derive2 { name="BNSP"; version="2.0.8"; sha256="03pl4rvcrsd471nb56rsichzyay57ij1pqn3vvi3dpnr6rnfv4xm"; depends=[coda cubature Formula ggplot2 gridExtra mgcv plot3D plyr threejs]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive2 { name="BOIN"; version="2.6.4"; sha256="0p1205pxa5a9sbw88fm8lbvzgzyq3mf62lsp0l2c0sfsvcfpydkg"; depends=[Iso]; }; @@ -299,7 +301,7 @@ in with self; { BSDA = derive2 { name="BSDA"; version="1.2.0"; sha256="0gs33yyca45jd4f5k5f7qid4ayw2rnl2wl7a6m7vf39dfx7ympm2"; depends=[e1071 lattice]; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; - BSL = derive2 { name="BSL"; version="0.1.1"; sha256="0g8nqsnhrghan2kx5iciv01drzn8kbx5klmrvcjz0ajfqjdm8kg4"; depends=[coda cvTools foreach ggplot2 glasso gridExtra MASS Rcpp RcppArmadillo]; }; + BSL = derive2 { name="BSL"; version="2.0.0"; sha256="14wd7g2b2l3777c07f392mb4dy9azy645zwlfc6lrh8lbcrgqdlc"; depends=[coda copula cvTools foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo]; }; BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; }; BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; @@ -311,7 +313,7 @@ in with self; { BTYD = derive2 { name="BTYD"; version="2.4"; sha256="13szcsgsrd7mwc4f47xrfrmsm2sg5sf7pfm21ly4cbvqcz8m0147"; depends=[hypergeo Matrix]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.0.1"; sha256="0x8as4zskpbsvhh8gnvzgp833dkv01cs5fqfva9qri296343kppv"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; - BUCSS = derive2 { name="BUCSS"; version="1.0.0"; sha256="133wsv784abrs6s1rhdi65qdrw5wx806r6pf76g3vbsf2qhk51qb"; depends=[]; }; + BUCSS = derive2 { name="BUCSS"; version="1.1.0"; sha256="1agx6yd29zq6gvwgnd0qahjnk5z7gdbijbg7rk85d5x6pihwmh9q"; depends=[]; }; BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; BVSNLP = derive2 { name="BVSNLP"; version="1.1.5"; sha256="1m6cpxm6pd831472qzj370f6q9sf416zd6ixphg3yqvvakgdznv8"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; }; @@ -353,7 +355,7 @@ in with self; { BayesH = derive2 { name="BayesH"; version="1.0"; sha256="0mjd1i3rkhyq3qcalq0ing0ap0igbhyvczaihl4pcfidgs70bci3"; depends=[]; }; BayesLCA = derive2 { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[coda e1071 fields MCMCpack nlme]; }; BayesMAMS = derive2 { name="BayesMAMS"; version="0.1"; sha256="1qq3j9nm0k58gpyfavz77v1dwghy8pmpk0v52cj7l8sb3a3aiinm"; depends=[mvtnorm]; }; - BayesMallows = derive2 { name="BayesMallows"; version="0.2.0"; sha256="19i5mb9vcvzjpqw3gi7q4p833w3kcnl27amjqayrx3abqbnf86xz"; depends=[cowplot dplyr ggplot2 HDInterval igraph purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; + BayesMallows = derive2 { name="BayesMallows"; version="0.3.1"; sha256="10b4n3kbglyzqypp5s1gnnymhqrzbvnxjf7i9pgrd693qzycg7is"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; BayesMed = derive2 { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[MCMCpack polspline QRM R2jags]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; @@ -376,8 +378,8 @@ in with self; { BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; }; - BayesianTools = derive2 { name="BayesianTools"; version="0.1.5"; sha256="02mwjy19y4mvqwqyc9b56l27gq40nrjq22dj7s12bip8bzqlh9gk"; depends=[bridgesampling coda DHARMa ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; - Bayesianbetareg = derive2 { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; }; + BayesianTools = derive2 { name="BayesianTools"; version="0.1.6"; sha256="1177ghvm4psb14395wmdbbcjbbxbjqdkpck1hhrw71b0cbw5vnp5"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; + Bayesrel = derive2 { name="Bayesrel"; version="0.1.0"; sha256="0nv5rar9h0yf2f710yb7g61lp8gvrkprp4qqqpc6r6vc22g8d02p"; depends=[coda ggplot2 ggridges LaplacesDemon lavaan MASS plotrix Rcsdp Rdpack]; }; BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.3.0"; sha256="1pbm2s2qpha58q5girc9vssanxqv6r65bwxw5fk5dmpgvl4ag3vj"; depends=[coda ellipse MASS mclust]; }; @@ -389,12 +391,13 @@ in with self; { Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; }; BeviMed = derive2 { name="BeviMed"; version="5.3"; sha256="01q5pr776ki973bcld20cqpsz9f10bb30vj95da9gbz5af6bvb14"; depends=[Rcpp]; }; - BeyondBenford = derive2 { name="BeyondBenford"; version="1.0"; sha256="154yyi1y8dnk0nqxq7kfz9dbar3xr37a93z31firglx9fikbz4zn"; depends=[]; }; + BeyondBenford = derive2 { name="BeyondBenford"; version="1.1"; sha256="1mqrzd6hpfsqxwm2sgc2lmgx7czvaj7qvhs05pj6p63n0fiimq9c"; depends=[]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; BiDAG = derive2 { name="BiDAG"; version="1.1.2"; sha256="076v7p70clk6wc20gr1cf6vi1x01nbi9pn7z51zwwg6i54a7hsr4"; depends=[pcalg Rcpp]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.0"; sha256="0k0708z6xn04zjkc4sk15649wji6hl5q4rvd28sz5kbq7z54j1j5"; depends=[Formula]; }; BiG = derive2 { name="BiG"; version="0.1.0"; sha256="1wi2lyj3q1x47cpf1mdm5kqvjlcvbrliym6j5jbmwz7npc910vrb"; depends=[truncnorm]; }; + BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.2"; sha256="0q2wqxj2ipmppilhvq80cnvhnhcp26h422i8ghx26nrkswhx378s"; depends=[diptest]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; @@ -402,7 +405,7 @@ in with self; { BigQuic = derive2 { name="BigQuic"; version="1.1-8"; sha256="1kg48jqm62qmz5x0h6fgvd5fs5dvg51x4spsn1q503ag4dqqdjc0"; depends=[Matrix Rcpp scalreg]; }; BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; - BigVAR = derive2 { name="BigVAR"; version="1.0.3"; sha256="0065amdg71i9lmv7illlxgxaiyb7lvpkc68ah5vgflb6l0djisb9"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; + BigVAR = derive2 { name="BigVAR"; version="1.0.4"; sha256="1jyxl9mvzgdj50z7zgg323xx5pnf8d9gn8nsf3jlkp0xgsixap3y"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.7"; sha256="1mxyrybxxkcm6nah227cx5mhddzq6k2pf1mmm5wl7jv1br43xdm8"; depends=[mclust oompaBase]; }; BinNonNor = derive2 { name="BinNonNor"; version="1.4"; sha256="00405ww9mh910jqww60w7cb8qbjql2jn13m60ly0bnxilg44r0bb"; depends=[BB corpcor Matrix mvtnorm]; }; BinNor = derive2 { name="BinNor"; version="2.2"; sha256="03cggpk9fhndnk9vv5i6fzsq4wjxc5405xxlxg3l9gb618kj437f"; depends=[corpcor Matrix mvtnorm psych]; }; @@ -414,21 +417,21 @@ in with self; { BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.3"; sha256="0l8kd1imb8022n631psm9na0vp502ndn2q7m3mshx9c0mnqsv8n3"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; - BioGeoBEARS = derive2 { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; }; BioInstaller = derive2 { name="BioInstaller"; version="0.3.7"; sha256="0xbxv2ln39z70javxbx5rf77yf9zyjif3ppnr3id7cmy24hhqcab"; depends=[configr devtools futile_logger git2r jsonlite liteq R_utils RCurl rvest shiny stringi stringr]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; + BioMedR = derive2 { name="BioMedR"; version="1.1.1"; sha256="19c2alcm28y6qb1ssfni7hq04lnw53apnx9ian0mmji9vd9zlhlz"; depends=[Biostrings ChemmineR fmcsR GOSemSim org_Hs_eg_db pls randomForest rcdk RCurl rjson]; }; BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; - BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; + BioStatR = derive2 { name="BioStatR"; version="3.0.0"; sha256="1fv37xckhpn0b744r71q7h57pr5j2y0v8hcc97cgzdsqd8p4axmk"; depends=[ggplot2]; }; BiocManager = derive2 { name="BiocManager"; version="1.30.4"; sha256="0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.10-1"; sha256="009xrfpnnplr2i7z8kcxp9q924mf7x8j9pqggczynrx5lb3dlrlj"; depends=[Rcmdr vegan]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.11-1"; sha256="0v122dmrcn48drldjslyfh78s5nh2sgw645ilvm6jmb446kn3zap"; depends=[Rcmdr vegan]; }; Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; Bioi = derive2 { name="Bioi"; version="0.2.9"; sha256="0kvqvvaws1zc3npxvl3jqidak24n5y8n98ml44mkbh7c5n296z2p"; depends=[assertthat dplyr igraph Rcpp]; }; Biolinv = derive2 { name="Biolinv"; version="0.1-2"; sha256="0g9vw1jcsjawmddkixssm5gbncy17fdd6a3c5b2qd4hx81kxz8q9"; depends=[classInt fields raster sp spatstat]; }; Bios2cor = derive2 { name="Bios2cor"; version="1.2"; sha256="00fzvj20x85gcpb9l6rfnm3qml8nnl365z1a68j90qi14wy6dfh6"; depends=[bigmemory bio3d circular igraph]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; }; - BivGeo = derive2 { name="BivGeo"; version="1.0.1"; sha256="1vdyjlcgkzpwgzzimpqspnca58xx6spfg7xy49bhmdr0d24iy76z"; depends=[]; }; + BivGeo = derive2 { name="BivGeo"; version="2.0.1"; sha256="1sj52v1zmk425jw9acq9y0jdp3agx103yzf1bjbc5vrmk1x0i0qr"; depends=[]; }; BivRec = derive2 { name="BivRec"; version="1.0.0"; sha256="161856bsny5jq7lmf79w9iqq5kq7c12hkxam5l746rfnrw1bzjzg"; depends=[knitr MASS Rcpp rmarkdown stringr survival]; }; BivRegBLS = derive2 { name="BivRegBLS"; version="1.0.0"; sha256="1fi399vv54dnfywxbc8yb1r58lrl7zpqkahvcx3f5svjy20dvvbw"; depends=[ellipse]; }; BivUnifBin = derive2 { name="BivUnifBin"; version="1.2"; sha256="0m4a2m7lvlm02hqqigwg3cd6sjzxnxqw1mchxj5g19whk34vwkwi"; depends=[BinOrdNonNor rootSolve]; }; @@ -446,7 +449,7 @@ in with self; { BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; Bolstad = derive2 { name="Bolstad"; version="0.2-40"; sha256="1xz2x8gm27aqw1b3psjbpmzkxla8rvkvb974c3imgj71d1x0ykgm"; depends=[mvtnorm]; }; Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; - BoltzMM = derive2 { name="BoltzMM"; version="0.1.1"; sha256="0jb81wn8b5lhvlkpv4rs66qdmryf57n2xmxgwl1qk0n8bfzy8ayi"; depends=[BH Rcpp RcppArmadillo]; }; + BoltzMM = derive2 { name="BoltzMM"; version="0.1.3"; sha256="0ljpgx5iiix7xy84xzvnjw427gx5mqdlbcgxhgfk62kn0fhp6y0q"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BondValuation = derive2 { name="BondValuation"; version="0.1.0"; sha256="1sgnf5a6rm1br6i82bmp7s044012bwfxa9yb6bjkq8kr83mf7i6v"; depends=[Rcpp timeDate]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; @@ -468,7 +471,7 @@ in with self; { BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.6"; sha256="0lj8s42ndqqllnm8v978481zqmc751v31909rir1pkwcsm3irisx"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-6"; sha256="1m3ajvcksqfck5l5hj5xiflj4ry6d896ybv4f0xxks8chgnwmv0r"; depends=[]; }; BrownDog = derive2 { name="BrownDog"; version="0.2.1"; sha256="0wnf1jcf4cakbvj9j1l7jk9mq7gd4j1il1ha2vglghqn04f27938"; depends=[httpuv jsonlite RCurl]; }; - Brq = derive2 { name="Brq"; version="2.1"; sha256="0my9sb0761nq1ivx31k7nwpg8xidqvd0zv3lan57hnsmn7d1i7a9"; depends=[]; }; + Brq = derive2 { name="Brq"; version="2.3"; sha256="13rassqn0d5f25nbcppxyih6f98dnjr7hxcw22y9kqw8c3qgxqpl"; depends=[]; }; Brundle = derive2 { name="Brundle"; version="1.0.8"; sha256="1yj196x6xb75qgi16pgg3dyjmxmjklfjcpxymaki32drhmylf24z"; depends=[DESeq2 DiffBind lattice Rsamtools]; }; BsMD = derive2 { name="BsMD"; version="2013.0718-1"; sha256="06w1dl5zp1cgjhk3m2zz6xsmcfwdk6ar3gmxdn96v71mqnhv81v1"; depends=[]; }; Buddle = derive2 { name="Buddle"; version="1.0"; sha256="1aw0xmdw4m778vk9wqxy90dv9rkkb17d51f0sdwypb3l7d4d897b"; depends=[Rcpp RcppArmadillo]; }; @@ -476,7 +479,7 @@ in with self; { BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; - BuyseTest = derive2 { name="BuyseTest"; version="1.6"; sha256="1p5v86xbcl88jmdpxzmwj5wmx6a6h8akzddb2lx03wcn759icx7v"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; + BuyseTest = derive2 { name="BuyseTest"; version="1.7"; sha256="0sjbwacpkw54wwzxd6866dzd03scl5g8ixcxs5ry26b2w0dncy60"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; C443 = derive2 { name="C443"; version="1.0.0"; sha256="0d04769m9kkjqpj1cgfhqrri893nwi6qn7fz63z5pkym5cig5yyi"; depends=[cluster ggplot2 gridExtra igraph MASS partykit qgraph RColorBrewer reshape2 rpart]; }; C50 = derive2 { name="C50"; version="0.1.2"; sha256="1fpspmsm62h077dkdhii23bs3sxlblabfqj4waz794ihw1b9hicg"; depends=[Cubist partykit]; }; CA3variants = derive2 { name="CA3variants"; version="1.0"; sha256="006r3a8jhkbgdfpycbdv3q1pfx9pkf102cgi285awgdhs6fhh88s"; depends=[ggplot2 ggrepel gridExtra]; }; @@ -489,12 +492,12 @@ in with self; { CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="5.1.1"; sha256="1c2lhh0aqkcg0wywsafcd2q946rh74km3hh2196fzirpl1hflpqi"; depends=[CARBayesdata coda leaflet MASS matrixcalc MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; - CARBayesST = derive2 { name="CARBayesST"; version="3.0"; sha256="1izz6lq56wlhwv7sbznckwrs7xpj2iz59g373ycbyjgwksx2k913"; depends=[CARBayesdata coda dplyr gtools leaflet MASS matrixcalc matrixStats Rcpp rgdal sp spam spdep testthat truncdist truncnorm]; }; + CARBayesST = derive2 { name="CARBayesST"; version="3.0.1"; sha256="1k2lv7imkzqrrsmsi7va29x3p3mb890jv7n3fsay3x9cg9n12dar"; depends=[CARBayesdata coda dplyr gtools leaflet MASS matrixcalc matrixStats Rcpp rgdal sp spam spdep testthat truncdist truncnorm]; }; CARBayesdata = derive2 { name="CARBayesdata"; version="2.1"; sha256="09rjxdrbpnqm6gv9g1jxh91jmww345wi9vlhb4s1n6b3xnh44fhs"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; CARRoT = derive2 { name="CARRoT"; version="1.5.0"; sha256="1bqmifxw6yzas7mxgwrwg11b884165z32g94vy4vwn5awpzvjyxw"; depends=[doParallel foreach nnet Rdpack]; }; - CARS = derive2 { name="CARS"; version="0.2.1"; sha256="0xk4zf6vvkcq21q7gn4zrl8md9lymkb8xq201gdfwqrys481c0lr"; depends=[np]; }; + CARS = derive2 { name="CARS"; version="0.2.2"; sha256="18l2bhfwma24q1zg1y1xmlcmnbzjqmmny3h7s179kslagnh3kmsj"; depends=[np]; }; CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.0"; sha256="1z321l34da5ggwmbggs9d8m96syra1jm29gj68lfhd7ikbpmw96w"; depends=[Rcpp]; }; CAST = derive2 { name="CAST"; version="0.3.1"; sha256="1cqadrww0w2wkqmh4mi2bmdr572q5qpnz2c4jpvwqrk2ynhz43qn"; depends=[caret ggplot2]; }; @@ -502,7 +505,7 @@ in with self; { CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; }; CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.0.0"; sha256="1ia4qfvj0nzxi6pwqnha2vpfcx3qwaw4vrjqiza11sai274j0pjy"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; - CAvariants = derive2 { name="CAvariants"; version="3.5"; sha256="14amvfm4l219zaqi3492433j3gbhrs6dbg7smgkyp7aklnidfw5g"; depends=[ggplot2 ggrepel gridExtra rgl]; }; + CAvariants = derive2 { name="CAvariants"; version="4.0"; sha256="16k25rhwzih1spbp0m80lv2vfrbm8l5ajkgp2i27gvnhhln227qm"; depends=[ggplot2 ggrepel gridExtra rgl]; }; CBCgrps = derive2 { name="CBCgrps"; version="2.3"; sha256="07cy8z1fyr328jpa98sdxwd1vydx8sr93jx79hjn9hgm157240mg"; depends=[nortest]; }; CBDA = derive2 { name="CBDA"; version="1.0.0"; sha256="0qm77vvqjgi83i8izly995ziv9ski8kgzqyq4g81i2k7a5dp8vxv"; depends=[doParallel foreach prettydoc SuperLearner]; }; CBPS = derive2 { name="CBPS"; version="0.19"; sha256="0rb04x8lin5p6h0ziiv2zh98qvah5mkpd3qbgrmhczacavvpb8hl"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; @@ -539,7 +542,7 @@ in with self; { CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; CINID = derive2 { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; }; - CINNA = derive2 { name="CINNA"; version="1.1.50"; sha256="19xh2n73b0qbnj9pihbwxkvaq96d459mj4wrkcnzbh93dj6841an"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; + CINNA = derive2 { name="CINNA"; version="1.1.52"; sha256="0j6l2zmzr0znhk7dhwmraprbxcb8bbr3g0nv3jpn6yzym1ksjvln"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; @@ -552,7 +555,7 @@ in with self; { CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; CMLS = derive2 { name="CMLS"; version="1.0-0"; sha256="1542qqsl6sksrcpwhnn55d260hkbmy4ikd0v2an96yxk5w95spvn"; depends=[quadprog]; }; CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; - CMatching = derive2 { name="CMatching"; version="2.2.1"; sha256="0q59k84vjvn8q75skrv31jqpjf6zqghkdk1saiwn6ys8rja03m4l"; depends=[lme4 lmtest Matching multiwayvcov]; }; + CMatching = derive2 { name="CMatching"; version="2.3.0"; sha256="0q0hplhsamj46z7g6pa7yg1bap5822ka1419yhcip551djhvnpmv"; depends=[lme4 lmtest Matching multiwayvcov]; }; CMplot = derive2 { name="CMplot"; version="3.3.3"; sha256="0p96cq37jkkqgq3l5kbi74w2j2p0a2cnjqvzalf2gzsv5zsakrir"; depends=[]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; }; @@ -571,11 +574,12 @@ in with self; { CORElearn = derive2 { name="CORElearn"; version="1.53.1"; sha256="01jjw32awqjlvrn2wanljr3v4nphjb8mknzmz4skyhx0zgdm369x"; depends=[cluster nnet rpart]; }; CORM = derive2 { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; }; COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; }; + COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; - CPBayes = derive2 { name="CPBayes"; version="0.3.0"; sha256="1vzh9sgij194j7kiwjgba7xsqffiif9zamj9gdv2lk91wdcqaxid"; depends=[forestplot MASS]; }; + CPBayes = derive2 { name="CPBayes"; version="1.0.0"; sha256="0m9hy14xmaa0lswn2dlrjvqcsg14smxy3w1nmy48l3af1c2kjnxv"; depends=[forestplot MASS mvtnorm purrr]; }; CPE = derive2 { name="CPE"; version="1.5.1"; sha256="0n3pd6daj0mzhh547syh7nz8iys6q27igqngldb8zd4ib4778603"; depends=[rms survival]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; @@ -599,7 +603,7 @@ in with self; { CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; }; CTTinShiny = derive2 { name="CTTinShiny"; version="0.1.0"; sha256="1dc6kaxajkvviszmrcvhh9cg2k8g1hbpf1f6fg3wlgnb80fsx9b7"; depends=[CTT foreign shiny]; }; CUB = derive2 { name="CUB"; version="1.1.3"; sha256="1qdqqiax9yc0vzcqkkzx81nb7gix0x5pknvbqp1xv200776wsfc4"; depends=[Formula]; }; - CUFF = derive2 { name="CUFF"; version="1.5"; sha256="1cphwhimzmsljfjvfvpld4mixznlsg5azzv7dwrgnh8q4wpnaxpc"; depends=[openxlsx xtable]; }; + CUFF = derive2 { name="CUFF"; version="1.6"; sha256="06ip6jrw6zgysz1lhlxxj26bv6hwg87qx6spqfinqrc9lz3p1y93"; depends=[DT lmerTest nlme openxlsx xtable]; }; CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.3"; sha256="149d16d5y7zxkzq8gmb5spfrvirv0vyhk2qx0v7vclkr8adz9sva"; depends=[]; }; CVD = derive2 { name="CVD"; version="1.0.2"; sha256="0agb0liwbp4wvmxbyxgfb7471ki1agfb6ssh77kvwbkxqmrc8d96"; depends=[]; }; @@ -612,12 +616,14 @@ in with self; { CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; Cairo = derive2 { name="Cairo"; version="1.5-9"; sha256="1x1q99r3r978rlkkm5gixkv03p0mcr6k7ydcqdmisrwnmrn7p1ia"; depends=[]; }; + CalSim = derive2 { name="CalSim"; version="0.2.2"; sha256="10bk7cgrw71ff3rsabnv35v70p4c8xi8cj5dm2izh7wsbsm5vmpv"; depends=[spatstat]; }; Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; CaliCo = derive2 { name="CaliCo"; version="0.1.1"; sha256="16a6hfd3s7dzb6mvpyn4fkdi5irfjsbal7niky2g6p54290va982"; depends=[coda DiceDesign DiceKriging ggplot2 gridExtra gtools MASS Matrix R6 Rcpp RcppArmadillo]; }; CalibratR = derive2 { name="CalibratR"; version="0.1.1"; sha256="0ka7amcml15qifwpw4phpn12r9qjn0dvlrlraf3af971yjmwc745"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; }; CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.1"; sha256="0rqa6xbxzqv0ks3i4pmmzczhf6g3ss6mb96g3d71y9xa6pzdxjjp"; depends=[survey]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; + CascadeData = derive2 { name="CascadeData"; version="1.2"; sha256="0czc41f1vj61rkdl6gnnnga3qliyxp0ffl5j9wrhrlwnbdaknics"; depends=[]; }; CaseBasedReasoning = derive2 { name="CaseBasedReasoning"; version="0.1"; sha256="0hwll17j0br8sr0ci3bfa5rx4r36hr7myq7b5fav664zjxdh9wr4"; depends=[cowplot data_table dplyr magrittr R6 ranger Rcpp RcppArmadillo RcppParallel rms survival tidyverse]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-1"; sha256="0gkaxs7apqhq7mp3chjsyhrnk3qkk11f8p7smmyj6h73888ry8jn"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; @@ -648,11 +654,11 @@ in with self; { ChemoSpec = derive2 { name="ChemoSpec"; version="5.0.225"; sha256="1my7klhx20cyn0r3k49ryrizlnf17q9pmrsnh0jjmzq4zc96wy11"; depends=[ChemoSpecUtils plyr]; }; ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.2.0"; sha256="1zhq5bg8alm9ys75x9839nvwgg1g36vckyqa5gx51by643p6wm4m"; depends=[ChemoSpecUtils matrixStats multiway plyr R_utils ThreeWay]; }; ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="0.2.204"; sha256="0j43hi3z2lyqcnj4ani3y310bzma367fqrz3rh0y79zyl683spx0"; depends=[amap plyr RColorBrewer robustbase]; }; - ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.11"; sha256="00z09bplm5qvd31y7m4b4knsrl0n27j9635m1gdak6lg4db4nxrd"; depends=[devtools kohonen MASS pls]; }; + ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.13"; sha256="166va1g3m1wv21qkmw4wpz0bsrclh3jih8smxphdc13l9pqgclpq"; depends=[devtools kohonen MASS pls]; }; ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; ChocoLattes = derive2 { name="ChocoLattes"; version="0.1.0"; sha256="0ircdar4fswaf34969gzgn83ia891jvwl29jn4s9a87cc4qagzgr"; depends=[ggplot2 knitr plotly R_utils rmarkdown WriteXLS XML]; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; - CholWishart = derive2 { name="CholWishart"; version="0.9.3"; sha256="0wc04aws8xnsjcfmbb937zcx1qakd9yhvsavnnxzbbi1s2bv91ah"; depends=[]; }; + CholWishart = derive2 { name="CholWishart"; version="1.0.0"; sha256="06scin39xgi6jcbvypiqr3nh5q5iywip50rkld6mpvavwd3rfpk1"; depends=[]; }; CircMLE = derive2 { name="CircMLE"; version="0.2.1"; sha256="031pmfyqwif16am7h1csk1dg9vhy0jgdc8w4z60kqqsgf3yk6il9"; depends=[circular]; }; CircNNTSR = derive2 { name="CircNNTSR"; version="2.2"; sha256="0z29dsvcwpra1ny8kj486dpnrak272wmkfnaiyashzcqpnkmkg03"; depends=[]; }; CircOutlier = derive2 { name="CircOutlier"; version="3.2.3"; sha256="1vyac4mjkn6p4p9n5finqqak6g7m3hj04a66v3w797jn1wbd1xly"; depends=[CircStats circular]; }; @@ -671,16 +677,18 @@ in with self; { ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.0.2"; sha256="178jsjhz3c2aq8bix34rs569qv6l0c8428zi10aadvzkip4xxbk7"; depends=[climdex_pcic multiApply PCICt plyr]; }; - ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.0.0"; sha256="00k1mcfb38bpsipq5v3ra322j9whbr4br36438lm8x05q220slp8"; depends=[Rcpp]; }; + ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; + CluMP = derive2 { name="CluMP"; version="0.7"; sha256="10k37ksqv3i5pgrhvi9wl1agpa2hbp95d89sssf91fkxsmdbk3jj"; depends=[amap dplyr ggplot2 MASS NbClust rlang tableone]; }; + CluMix = derive2 { name="CluMix"; version="2.3.1"; sha256="058mxpn399v35k8fa69plkwqzk5qdyifvzvy29m07vl5mfb6mgy4"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; }; ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; }; ClusVis = derive2 { name="ClusVis"; version="1.1.0"; sha256="17cn3hm37jv10aybaidy89kch6814hdi8g44s94xa9li7nixzass"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; }; ClustOfVar = derive2 { name="ClustOfVar"; version="1.1"; sha256="0grhkab7s58ji4cf7cxh7ahd2dxrj8aqfdf3119b40zxkxbwxcr0"; depends=[PCAmixdata]; }; ClustVarLV = derive2 { name="ClustVarLV"; version="1.6.0"; sha256="1425qgkr4ypbgi59phb9m0haahqc9g4jvjv5lmizaxph10r6gimi"; depends=[doParallel foreach iterators Rcpp RcppEigen]; }; - Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.1"; sha256="18is8aa496qr7afmyqy12s267ans0hhzy0xs8nzr3qp70mwrbbh1"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr tibble]; }; + Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.2"; sha256="1hh5aah5vnk1ld4hhpslr7hvxhw2b5x55rzxrm6j101sw533706h"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.0.0"; sha256="0m1lfp27vn3ybwimwkrihff5v2bvdc4c46x8bha8hw0wma14lw5i"; depends=[]; }; - ClusterR = derive2 { name="ClusterR"; version="1.1.7"; sha256="025cfygqzz4296sfcdblw69fidjn2kd27w2p2sw2wqly1l2c67j6"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.1.8"; sha256="0zy250cp9sx3azjbxzwyhcs0f9w1fx9xxcrkl2h1ym02ccdrj9dv"; depends=[FD ggplot2 gmp gtools Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; @@ -697,7 +705,7 @@ in with self; { CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; }; ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; - CombMSC = derive2 { name="CombMSC"; version="1.4.2"; sha256="1wkawxisn9alpwrymja8dla8n25z2fhai3l2xhin0b914y2kai09"; depends=[]; }; + CombMSC = derive2 { name="CombMSC"; version="1.4.2.1"; sha256="1jxf59hs1px271im2dwc1653y9pfp79gwmacafcva224bvh5vi49"; depends=[]; }; CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; CombinePValue = derive2 { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.3"; sha256="0w4mw748ix7jyqfirr8bm93i742y7bpir7q5x1j3r9cqpi9h5zfv"; depends=[]; }; @@ -716,7 +724,7 @@ in with self; { CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.2"; sha256="0zyawv3kh3hxp771bh01jck2cvy3mz92nkv454lk70h35qm4sgrb"; depends=[data_table expm Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; Compind = derive2 { name="Compind"; version="2.0"; sha256="1qadyl96c9cmk1i763gc055hgv414ha59418lqk183kwl5sgbqy5"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; - Compositional = derive2 { name="Compositional"; version="3.2"; sha256="0x18k02q159wr6c0nir0b3j7y0l1jwcx37qny5jpqqb82lxpncsb"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; + Compositional = derive2 { name="Compositional"; version="3.3"; sha256="1javm917fflbjwjvaznfw0dmrajw7wlvhdhqmykxk4jr0wh1hvfq"; depends=[doParallel emplik fields foreach MASS mixture Rfast sn]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6"; sha256="1kkc4xp5b6q54b76wk4ga28wl668psbpyivl6bnh3xm21276yx5k"; depends=[Rcpp]; }; ConR = derive2 { name="ConR"; version="1.2.2"; sha256="0my9cb7psm0zinyfr1p8a53lbfbqf6hx7lfyxkqszckpj7gsg3hr"; depends=[doParallel fields geosphere maptools plyr raster rgdal rgeos sp spatstat spatstat_utils tibble writexl]; }; @@ -726,6 +734,7 @@ in with self; { CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; }; + CongreveLamsdell2016 = derive2 { name="CongreveLamsdell2016"; version="1.0.0"; sha256="1iplg0y4x5wyipp4hi6pmqm6czx1hl7gb1hv0yk2csad476gnmcm"; depends=[Ternary]; }; Conigrave = derive2 { name="Conigrave"; version="0.4.2"; sha256="0qpvjnh5ig5p49w13lbh6z7hjm5hx9wjav94pw0wanmxs7n46w6j"; depends=[dplyr ggplot2 magrittr miceadds mitools ppcor stringdist stringr]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.3"; sha256="0zsn3al3di0fd9hkqljpqqy4zbmh97xr6cdi4fzv80ax81fjfqyk"; depends=[]; }; @@ -734,17 +743,15 @@ in with self; { ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.0"; sha256="1hlff3wx8r1wpkhrz0n27wjnzy6z2q8s9smyb906gwwa9xga7njy"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="1.4.3"; sha256="0glfnwmfs6xv4d1h5y0859srvj3y68192589mdjcx0jgkgk2c9np"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.1"; sha256="0kl67ds6369mxl2i93h43r00ji12qkg0k9m4jhcxsb0ydd8rfqgp"; depends=[lattice tkrplot]; }; - CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-3"; sha256="1kb21a8mp3blgnvyzqcwh1zz1mkdq6c759g9dlw3dzp2gnpzl5zp"; depends=[dplyr geosphere ggplot2 raster rgdal rgeos rnaturalearth sp tidyselect]; }; + CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-7"; sha256="1cs2i0wjrdiksc9cvz733mkf91na6yis8figg4yh9xwv0ndd6y3n"; depends=[dplyr geosphere ggplot2 raster rgdal rgeos rnaturalearth sp tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; - Copula_Markov = derive2 { name="Copula.Markov"; version="2.1"; sha256="09036bnxb0r0k6lk6sb258yrw4q458nmxinmvnishnq5bifps4v4"; depends=[]; }; + Copula_Markov = derive2 { name="Copula.Markov"; version="2.3"; sha256="0kr558y7l6mlcdj01yq6wc350bxqvhgi3mngxxwi6abqm58sj96i"; depends=[]; }; Copula_surv = derive2 { name="Copula.surv"; version="1.0"; sha256="1cq12vmsvrxd6anpv6b5jig7x1lf6pj589353h2ba9k0fhkpk51y"; depends=[]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.1"; sha256="044si0nwniiglrcg6mjvs4z3hk6hhhsy49c6pigy6yf1wvvqxp4m"; depends=[matlab statmod tensor]; }; - CopulaRegression = derive2 { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; }; CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; }; CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; }; CorReg = derive2 { name="CorReg"; version="1.2.8"; sha256="18l9aiv2ipvs14ycnzq99yvnkws38wnj42zbk5jqgv33kn37qbx2"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; - CorShrink = derive2 { name="CorShrink"; version="0.1-6"; sha256="15ay6ws9216lv15mpgldank3klw3zz5j4nwvv1s88jjfn2ln5c1l"; depends=[ashr corpcor corrplot glmnet gridExtra MASS Matrix reshape2 SQUAREM]; }; Corbi = derive2 { name="Corbi"; version="0.4-3"; sha256="00fjw7jn7syxnczc31m3nmafz6pjyidkr81vrck2ma50m6zx9mwv"; depends=[CRF Matrix mpmi]; }; CornerstoneR = derive2 { name="CornerstoneR"; version="1.0.1"; sha256="129f537pqiw1hbagnk5203jy8w2nhpw852qfcwg4nklw7mj1phnj"; depends=[checkmate data_table ranger vcd]; }; CorporaCoCo = derive2 { name="CorporaCoCo"; version="1.1-0"; sha256="1s3wlcy6mnw9riivw5lc4gd6bjbsd77m15ipr95g46isdcrli8zb"; depends=[data_table RColorBrewer rlist]; }; @@ -760,7 +767,7 @@ in with self; { CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; }; CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; }; CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; }; - CovTools = derive2 { name="CovTools"; version="0.5.0"; sha256="1skkv1i7q9sw71c95606ikwq93nlj0bs42w7j70jv1zbvq4sdmfz"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; }; + CovTools = derive2 { name="CovTools"; version="0.5.1"; sha256="0fz7cvyfnf082kf5wymds3rzn4qln4s371i2qlpcmqgsszcxjkvj"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; }; CoxBoost = derive2 { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[Matrix prodlim survival]; }; CoxPhLb = derive2 { name="CoxPhLb"; version="1.0.0"; sha256="1j8dvbjv4h0zdjvwvpswdlsb9pf3gxixh2rhl0m1kxm6f6h5ig0z"; depends=[survival]; }; CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; }; @@ -772,7 +779,7 @@ in with self; { CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; }; CrossClustering = derive2 { name="CrossClustering"; version="4.0.3"; sha256="05lbdmblwmmv24h46ixxabbrp7mpajyv7raw1p5h0dmsbfbq9hi5"; depends=[assertive cli cluster crayon dplyr flip glue magrittr mclust purrr]; }; CrossScreening = derive2 { name="CrossScreening"; version="0.1.1"; sha256="1gig80r8p611ysn35ajx7xdjj5wnkcf1vspcf0i06dmh75xpm3w9"; depends=[plyr tables]; }; - CrossVA = derive2 { name="CrossVA"; version="0.9.4"; sha256="199k3mys56asiih5x1mp2cmpr2hdivf7wq82rzjllrrg8284gmbm"; depends=[lubridate stringi]; }; + CrossVA = derive2 { name="CrossVA"; version="0.9.5"; sha256="06zhj4v3cgixyz3d6nkiyxigk48z3kkisimi1pm5rqd7dkcr2xq0"; depends=[lubridate stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.2"; sha256="1dlvkv712rz3gw03c04qlk0l0mqjyds3m3pnbszk4848zby5ac6r"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-17"; sha256="168j8fl6h7x1pia5f5c18yrf0y1lvznib8clq1mv0imb7cjzkkhi"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; @@ -796,7 +803,7 @@ in with self; { DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; }; DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; - DALEX = derive2 { name="DALEX"; version="0.2.5"; sha256="0iv9wfl77mq7j2w7x78kpbkq7v8q4ixdj515lrifw7hvwpr8iy68"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; }; + DALEX = derive2 { name="DALEX"; version="0.2.6"; sha256="131n3xjn92r8n7kdcmxw454yh1cxc0jpxqmkqvpal97s0qzqd88x"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; }; DALEX2 = derive2 { name="DALEX2"; version="0.9"; sha256="1k39gswksicrb60nx7zzna3mqdm36ckg590iw511ga7frnb8fjl9"; depends=[]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; }; @@ -834,7 +841,7 @@ in with self; { DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; - DEVis = derive2 { name="DEVis"; version="1.0.0"; sha256="11g7ycvs8z1bnnyl5y6sypgm29pywpp652kg1nzib1x3dyl8cxvl"; depends=[DESeq2 ggdendro ggplot2 ggsci ggthemes gridExtra MASS pheatmap plyr PoiClaClu RColorBrewer reshape2 SummarizedExperiment]; }; + DEVis = derive2 { name="DEVis"; version="1.0.1"; sha256="0fb8q72gm9h52v6fc12jcvk9k59qrns74yqjvj73nch29gkr16hp"; depends=[DESeq2 ggdendro ggplot2 ggsci ggthemes gridExtra MASS pheatmap plyr PoiClaClu RColorBrewer reshape2 SummarizedExperiment]; }; DEoptim = derive2 { name="DEoptim"; version="2.2-4"; sha256="10nlsvms5pf0wmn4z1lj6vnmpwr10q8nhdy5xy9rn7hd1627fm0a"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; }; DEploid = derive2 { name="DEploid"; version="0.5.2"; sha256="0xjczfql6jl4jxxwvdn3gmwj8bawhj5w6hdamrb0yjdjlhdwb11y"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; }; @@ -842,8 +849,8 @@ in with self; { DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; }; DGM = derive2 { name="DGM"; version="1.7.2"; sha256="0z0f8bazzsahvjkpfif50db700mqb7arcglwsfxcar9qdy082vsn"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; DGVM3D = derive2 { name="DGVM3D"; version="1.0.0"; sha256="17cxv8rm7kmxms7v7hzbwbdwa3xl1hwgiljf97ppwswglqyik9iv"; depends=[rgl]; }; - DHARMa = derive2 { name="DHARMa"; version="0.2.0"; sha256="0jh01z2ygz8hi0vh2fxw52ck0wia4hp44qc7v0bks8776gbwj8il"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qrnn sfsmisc]; }; - DHS_rates = derive2 { name="DHS.rates"; version="0.4.0"; sha256="12q5qn9k9svabqsya039axx1lnafcq4mlnnb0nyfdjhklnh7k870"; depends=[haven matrixStats reshape survey]; }; + DHARMa = derive2 { name="DHARMa"; version="0.2.2"; sha256="03z9i790wpy9aj5d4q89hrw6178hbg0id9p7yhm6k0p6ssdz3jvw"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qrnn sfsmisc spaMM]; }; + DHS_rates = derive2 { name="DHS.rates"; version="0.6.0"; sha256="0qykxfx7akbn2m48q0pimk6x27kxrr4bv04pylh5ajlli452154c"; depends=[crayon haven matrixStats reshape survey]; }; DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; }; DIFlasso = derive2 { name="DIFlasso"; version="1.0-3"; sha256="195wiy0jjkq6bh2b6wrjmr5l34pzx0i2qqvwp4pzv77sx737ds0v"; depends=[grplasso miscTools penalized]; }; DIFtree = derive2 { name="DIFtree"; version="3.1.4"; sha256="1q02229vlmyxqasbxiscxvqpcip1r0sbwbp7ja909ljhc5b76pr8"; depends=[gridBase penalized plotrix VGAM]; }; @@ -852,7 +859,7 @@ in with self; { DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; - DJL = derive2 { name="DJL"; version="2.8"; sha256="1aaq4rj33csphrmhx0a8vx7frq4dssrcb7appggmgl36dhpqklv8"; depends=[car lpSolveAPI]; }; + DJL = derive2 { name="DJL"; version="2.9"; sha256="0nqxnlx0gchsadv4wrdlx2dwc0935ih3ffhp1kdjgl9y3azgn20k"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; DLMtool = derive2 { name="DLMtool"; version="5.2.3"; sha256="1rkxpfk3pa566crl01z0nmkl44n1gxdp6idfhrc6p1jwccx9fgdv"; depends=[abind boot broom devtools dplyr fmsb ggplot2 ggrepel gridExtra kableExtra knitr MASS mvtnorm openxlsx purrr Rcpp RcppArmadillo readxl rfishbase rmarkdown shiny snowfall tidyr]; }; DMMF = derive2 { name="DMMF"; version="0.5.0.2"; sha256="02sk1ykispkjdclsi5xp1m4vmf8mhcqm4q2z73xanvax1kqfb3v3"; depends=[raster rgdal sp]; }; @@ -872,15 +879,16 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPWeibull = derive2 { name="DPWeibull"; version="1.2"; sha256="0s1c3pn8pivg4227xhis5scmh9zc6fq36inphy6226hriny6q0v9"; depends=[DPpackage matrixStats Rcpp truncdist]; }; + DPWeibull = derive2 { name="DPWeibull"; version="1.3"; sha256="143mvynkb6k7fbaxlyisw7a4acssqjyh7jld5myz55ns3r3fablw"; depends=[DPpackage matrixStats Rcpp truncdist]; }; DPpackage = derive2 { name="DPpackage"; version="1.1-7.4"; sha256="0lfw55kbjwr1dqkd98p6488p6c0nh5pkfkc9wpds8wsqm38siad6"; depends=[MASS nlme survival]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRIP = derive2 { name="DRIP"; version="1.4"; sha256="1rds1161h19waqhiq08hqk5zcn48afccaggmb42xr1zyk31irpi6"; depends=[readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.3"; sha256="1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; + DRomics = derive2 { name="DRomics"; version="1.0-2"; sha256="0kvhby807h4ilmrlbcxlmw3rncvg9i428n8rl40v2w865a0p6861"; depends=[ggplot2 limma]; }; DSAIDE = derive2 { name="DSAIDE"; version="0.7.0"; sha256="0n99d9ry5svp3fpvkzv3z6mfwlnzd7grf4yrsmn6cpw9m2cmy5yz"; depends=[adaptivetau deSolve dplyr ggplot2 gridExtra knitr rmarkdown shiny tidyr XML]; }; - DSAIRM = derive2 { name="DSAIRM"; version="0.4.0"; sha256="1jr4nxhb5b5a7snpi6j1kzd1lfvjm88s9zgx20m2sz37jw1lrsmd"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra knitr lhs nloptr rmarkdown shiny tidyr XML]; }; + DSAIRM = derive2 { name="DSAIRM"; version="0.5.0"; sha256="18lw8pnbx15inc09b0snjfhrpc2kvl6llrbm3gkk66wvcvywz5ns"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra lhs nloptr shiny stringr tidyr XML]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; DSL = derive2 { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; }; DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; @@ -895,6 +903,7 @@ in with self; { DTMCPack = derive2 { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn = derive2 { name="DTRlearn"; version="1.3"; sha256="0ngzvjlzn20pff1ihw87nar7riiva4pnfih7hlsr0iszd3v3b1gq"; depends=[ggplot2 glmnet kernlab MASS]; }; + DTRlearn2 = derive2 { name="DTRlearn2"; version="1.0"; sha256="0aly8byygpgsjfa1lzarcig2dvz852ihdlw7xhb7kx62y8prjzz1"; depends=[foreach glmnet kernlab MASS Matrix]; }; DTRreg = derive2 { name="DTRreg"; version="1.3"; sha256="1144kcqblyrpdqyj9as6y47iq3x99bf76hdw6j43cmgcs11gapc3"; depends=[]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; @@ -904,13 +913,12 @@ in with self; { DWreg = derive2 { name="DWreg"; version="2.0"; sha256="0bgahzgcxz86n0ady97l48zyahv3p2iyc2ivbij1xrfx3wcx3b5n"; depends=[DiscreteWeibull Ecdat maxLik survival]; }; DYM = derive2 { name="DYM"; version="0.2"; sha256="1rk0xs224xi68f0mrygny2rklggl4grk866q7y9xck38bwy7aw94"; depends=[]; }; DZEXPM = derive2 { name="DZEXPM"; version="1.0"; sha256="0qk93jsfrlbq4b9mgwq0fpyad7w81b0hcfa4xgaahd05p2jbcqrj"; depends=[]; }; - Daim = derive2 { name="Daim"; version="1.1.0"; sha256="19s0p3a4db89i169n2jz7lf8r7pdmrksw7m3cp9n275b5h8yjimx"; depends=[rms]; }; DamiaNN = derive2 { name="DamiaNN"; version="1.0.0"; sha256="09viy1lilz0b29s3myky03981bfnhxjxxgfhdah33cn5x682rbp4"; depends=[caret testthat]; }; DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; Dasst = derive2 { name="Dasst"; version="0.3.3"; sha256="0nrcvcfzr2y1jc984rpi3fmggns65sphc6nqr9l91h5qvpdcw7cl"; depends=[]; }; DatAssim = derive2 { name="DatAssim"; version="1.0"; sha256="120gazyyxda9faydv2lyqgvflhqi2fhih1szq0sy5v1gh4xb0hhy"; depends=[Rcpp RcppArmadillo]; }; - Data2LD = derive2 { name="Data2LD"; version="1.1.0"; sha256="0sa6iwhhnj7rakj57zscl4008jskd26zbdvxqr08bpf8xbk9v3xi"; depends=[deSolve fda Matrix R_cache]; }; + Data2LD = derive2 { name="Data2LD"; version="2.0.0"; sha256="145lvrscq3iyc7cy6xr0vrm5qa2323m3c3g2ikdhj18rhzx4r46k"; depends=[deSolve fda Matrix]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; }; @@ -918,17 +926,16 @@ in with self; { DataGraph = derive2 { name="DataGraph"; version="1.0.1"; sha256="0rvysvkcs926jzhp7iz9d5np0pa31y825ajn9yyzhbdfk5dg2wry"; depends=[Rcpp]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; DataPackageR = derive2 { name="DataPackageR"; version="0.15.4"; sha256="1q9n0684hi1y87zq25274s2kgdk7slsb2nchww36yy45vlzi3jsn"; depends=[assertthat crayon desc devtools digest futile_logger knitr purrr rmarkdown roxygen2 rprojroot stringr usethis yaml]; }; - DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.4"; sha256="0q6pz9j6js5q8mma6d1vl4wngk5zzmfq0hssrh2pk2brnm6958mj"; depends=[AdaptGauss ggplot2 Rcpp RcppArmadillo sp]; }; + DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.5"; sha256="0fam4gdgs9j6cmi482b61xwyn7yskrc528whm4byknvihrig4i2z"; depends=[AdaptGauss ggplot2 Rcpp RcppArmadillo sp]; }; DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.2.1"; sha256="1ks8a93q9sv4s3qw753vlza50f2250n2schx49pkn12bjyf74av9"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.0.0"; sha256="1m739q9x5w2xcwx19qm633z6xfijqdgcdvfjj6c5jhn66hc401nq"; depends=[rJava]; }; - DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.0"; sha256="19in7n2fs5m965wf37mplsafiqrmgv1lcyhf7rlk4wvq4y2gvic6"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; + DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.1"; sha256="06i5vinyjkmlmz8q9m7zzc86hhyand45vxv9w7lkah5yzc785n3c"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; }; DeLorean = derive2 { name="DeLorean"; version="1.5.0"; sha256="1ry6j4mvxms9hddi9c56p9yhjh66fzss41wqkf6xq398h1wbn4q1"; depends=[BH broom coda dplyr fastICA functional ggplot2 kernlab lattice MASS memoise Rcpp RcppEigen reshape2 rstan rstantools seriation StanHeaders stringr]; }; DecisionAnalysis = derive2 { name="DecisionAnalysis"; version="0.1.0"; sha256="1pxsvwl1in822ml7spb4flln2l7kzavq0jhxxsgxcrljypvrva61"; depends=[Cairo data_tree dplyr ggplot2 gridExtra tidyr viridisLite]; }; - DeclareDesign = derive2 { name="DeclareDesign"; version="0.12.0"; sha256="10axiy1lshqv6hh26i3ci7sqffs1vl68phcv2kxpb98m0n9l4pbm"; depends=[estimatr fabricatr generics randomizr rlang]; }; + DeclareDesign = derive2 { name="DeclareDesign"; version="0.16.0"; sha256="185vw4p8q7ivn682q743m9hwh20fyh8lmp7cawicph8gbd7krn2f"; depends=[estimatr fabricatr generics randomizr rlang]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.1"; sha256="1dvyadlksqv8ns043yh91f6kw162k6r0zwn13j1g6pvismw04br9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; - DeducerExtras = derive2 { name="DeducerExtras"; version="1.7"; sha256="0sngsq31469a74y7nhskl82fwy2i0ga68m9g6b1xyhxz1a8kgvlg"; depends=[Deducer irr rJava]; }; DeducerPlugInExample = derive2 { name="DeducerPlugInExample"; version="0.2-0"; sha256="03aw7wr957xzw920ybyzxnck5kx0q2xpcrpq8jh2afyzszy6hzbi"; depends=[Deducer]; }; DeducerPlugInScaling = derive2 { name="DeducerPlugInScaling"; version="0.1-0"; sha256="1qg11vi4szznchh54p9345jbmrfzfr9z5l3x5xz4m86myjkys1mb"; depends=[Deducer GPArotation irr klaR mvnormtest psych]; }; DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; @@ -946,10 +953,10 @@ in with self; { Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepthProc = derive2 { name="DepthProc"; version="2.0.4"; sha256="1dh159pvvn2hbjydb9ys8ndblpzpyg72g2hfiqrdi3bkz865xvg5"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="3.8.5"; sha256="0815ws2zmla3ici1n8amkc8fz8lwpbg5z68m8j3nhc79m2ikvm20"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.26"; sha256="0bzcvpabzq9glm19w3y1n8lmvabkrmm5s6c7xvy1v46qcmwb2vf0"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; + DescTools = derive2 { name="DescTools"; version="0.99.27"; sha256="1rvpkgzc51x6lq3sbdbn9wa0kd4xqih6barnfc4hdkjpm45q7d1s"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.1"; sha256="1hkilb034iqypq5vdxwcjvxrxgmrri89cx4fc04d8yhgd3afaq27"; depends=[DescTools rstudioapi]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.7"; sha256="0241mbz0y3ala7fsb4fwjd0xigsk0wq77hfrjyvnnp97rfjfzmcv"; depends=[GGally ggplot2 plyr reshape2 scales]; }; - DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.0"; sha256="1cgxnsxivsqchzqywv470q9qwxczmcvwhrr51m70mcbzmib4mxw3"; depends=[curl dplyr jsonlite magrittr RCurl reshape]; }; + DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.1"; sha256="1bqq56m4vhmgijxpyllpy08xx29k0p7lhmd0iwa06jdw4lj5rdah"; depends=[dplyr jsonlite magrittr RCurl reshape]; }; DesignLibrary = derive2 { name="DesignLibrary"; version="0.1.2"; sha256="053swmnflcahrr1x3zax921ffks1gnwvri6hs04k7fzc71s9l5xf"; depends=[DeclareDesign estimatr fabricatr generics randomizr rlang]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; @@ -974,21 +981,21 @@ in with self; { DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; Digiroo2 = derive2 { name="Digiroo2"; version="0.6"; sha256="1b1ahhqz5largjadlk5n6nw2183c05k28mksb1wm26y0lps0vdgr"; depends=[maptools spatstat spdep]; }; - DirectEffects = derive2 { name="DirectEffects"; version="0.1"; sha256="0c9inxn624c5rxa86d8r8jhsrm42rcsm4xxrwg7h3lvpairiyil2"; depends=[Formula]; }; + DirectEffects = derive2 { name="DirectEffects"; version="0.2"; sha256="0cawn1i1cyczsr9zpcaky79dfdl9anfjgiaa2404capacnj3call"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; Directional = derive2 { name="Directional"; version="3.4"; sha256="1q3ld6nwd120h6rhf9nwaj8irqks580vgdg7n6pkdhq5q88yhw2h"; depends=[doParallel foreach MASS RcppZiggurat Rfast rgl]; }; - DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; }; + DirichletReg = derive2 { name="DirichletReg"; version="0.6-3.1"; sha256="1lz4b166grrs6vs98mf6a0wg4hvh0p901h697h9dkfhkxw8cqj3f"; depends=[Formula maxLik rgl]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; DisImpact = derive2 { name="DisImpact"; version="0.0.3"; sha256="1xmbwhbhb2jyzar8am77zma7l5siyhzna6l69y2068lqrk7l5w32"; depends=[dplyr magrittr rlang]; }; - DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.1"; sha256="0flirs7m2a8igkf0qvr99i882k886iry8wjzsb2l4zp0f1piwjyy"; depends=[]; }; + DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.2"; sha256="1dfwk3c94rx66dm30w5i4287f509msw24x0lyfaxychyqmdzv8np"; depends=[]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; Distance = derive2 { name="Distance"; version="0.9.7"; sha256="0g2zb7im3l4043bml7akd2cbss3p7mlvds6iv1libimlpy1dr71f"; depends=[mrds]; }; - DistatisR = derive2 { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[car prettyGraphs]; }; + DistatisR = derive2 { name="DistatisR"; version="1.0.1"; sha256="0myzfki8yrk0nhgdgsqs4wjbqhzmkdil1g005hc7p4lz3gi09bfx"; depends=[car prettyGraphs]; }; DistributionUtils = derive2 { name="DistributionUtils"; version="0.6-0"; sha256="08vq54pyqxlqsj6q6gsg5ikqa0z3x842j52ld5dxaq272p6xchvl"; depends=[]; }; DivMelt = derive2 { name="DivMelt"; version="1.0.3"; sha256="03vkz8d283l3zgqg7bh5dg3bss27pxv4qih7zwspwyjk81nw3xmr"; depends=[glmnet]; }; DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; @@ -1008,19 +1015,20 @@ in with self; { DrBats = derive2 { name="DrBats"; version="0.1.4"; sha256="0jzl1jklxsbqf5hv3a71lckk51jxi1lnbk5zmvd4x3y9b9azl2cq"; depends=[ade4 coda MASS Matrix rstan sde]; }; DrImpute = derive2 { name="DrImpute"; version="1.0"; sha256="1adzarrwqb282pqgx2yqswp9rpwd1naxsmar54kddr6qyd6b923b"; depends=[Rcpp RcppArmadillo]; }; DrInsight = derive2 { name="DrInsight"; version="0.1.1"; sha256="02lqf6bwbgcgyg5zx16nvnzpagmcmbsngnhmyv47256vsd9vppjd"; depends=[igraph qusage]; }; - DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.1"; sha256="1459l5bq4yz79qrxqqm7svd4swcxghk4mjkv98nmxwxaasg9srhc"; depends=[Rcpp RcppArmadillo]; }; + DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.1.1"; sha256="0862prm5xbri1zw9nklj9pmf9dz3bj12shmsaj21721lv493klrb"; depends=[Rcpp RcppArmadillo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; DstarM = derive2 { name="DstarM"; version="0.3.0"; sha256="16vcv21dgnymhsy9j5x5pblnipf4hdyscajx6pr8kl6i95hs3hmj"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; - DtD = derive2 { name="DtD"; version="0.2.0"; sha256="0s6prl8rmpjmsv94ww3pvks11nw716gf7250jyynharvqd9q9aps"; depends=[checkmate Rcpp RcppArmadillo]; }; + DtD = derive2 { name="DtD"; version="0.2.1"; sha256="15xj4xwg8jis8v2d7yv4wqmihqdm47f4n4zy7kpp5n854dvv9f0p"; depends=[checkmate Rcpp RcppArmadillo]; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; DynClust = derive2 { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; DynNom = derive2 { name="DynNom"; version="4.1.1"; sha256="1c4hykp8fwr6h5y09m4qs23bmbaj6im2c833mv2ymlhy5bwhmnfi"; depends=[BBmisc compare ggplot2 plotly rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="3.2"; sha256="0a6s28vc7kf6r7qmy9xjmxm39fl0ijnbl01d8rzr4w9sbnr3n85l"; depends=[dfoptim kernlab modelObj rgenoud]; }; + DynaRankR = derive2 { name="DynaRankR"; version="1.0.0"; sha256="1smxgsxl0s5ynlphssd2q59f40zxin8im91fdcvawchc4qj2lmgg"; depends=[dplyr rlang]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; - DynamicGP = derive2 { name="DynamicGP"; version="1.1-1"; sha256="14xmsxvzl4jri6727qj7mzs1smlqm1hgq03v5r624dqkkmfbdxkv"; depends=[lhs]; }; + DynamicGP = derive2 { name="DynamicGP"; version="1.1-2"; sha256="0myw6k2jnb1g1cfyacbib5bv43jiv2n451220hv5v87514y3z5kf"; depends=[lhs]; }; EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; @@ -1040,11 +1048,9 @@ in with self; { EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; EDR = derive2 { name="EDR"; version="0.6-6"; sha256="10m92p3fy5z2kca4h9awwmvs4pqri92habkvgjvjl5ira09yvyi7"; depends=[sm]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; - EFAutilities = derive2 { name="EFAutilities"; version="1.2.3"; sha256="1r2ma22r1bs5yn0k4c4p2ks571vp6bzmr4wsd25w535k5qfjx2np"; depends=[GPArotation mvtnorm plyr]; }; + EFAutilities = derive2 { name="EFAutilities"; version="2.0.0"; sha256="1vbpz9papk6vvch3kb2qm6nspa4llp4mpck6ky1j8kvkhjzm1za0"; depends=[GPArotation mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; - EGRET = derive2 { name="EGRET"; version="3.0.0"; sha256="1zl93cf8wmbxc095bsw0ngsfalgrydgn3mvnsnpzg3bp18idvwsw"; depends=[dataRetrieval fields foreach survival truncnorm]; }; - EGRETci = derive2 { name="EGRETci"; version="2.0.0"; sha256="1jndrkg3wn46d2fxb6l4f77v65vvq0ir91zr3iyh01lhlksnf33j"; depends=[binom EGRET]; }; EHR = derive2 { name="EHR"; version="0.1-3"; sha256="1y12j0sjr1zp3bzha1p31f903js674l6ifjccw0y9718sry8dbv2"; depends=[logistf]; }; EIAdata = derive2 { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; @@ -1064,10 +1070,9 @@ in with self; { EML = derive2 { name="EML"; version="1.0.3"; sha256="04qz4rwq0amy9lp6358qjjql46ky2slqrvipngym5klqvm9vi0zi"; depends=[uuid xml2]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.4"; sha256="1i36s8mzp04alff6lqkc798xjzgn61wdpl5i0awjdvg26ka8v7lj"; depends=[GPArotation limSolve shape shiny]; }; EMMIXcskew = derive2 { name="EMMIXcskew"; version="0.9-5"; sha256="1ys5kvns6jlw2lk9m6xcy71wx1d581cmphiaxnp3hsqimc8wz7hq"; depends=[MASS mnormt rgl]; }; - EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.0"; sha256="1jadasvngxczyyc7gxpcw3jxhxai3p88l8lmj1jmdns5vdi2n4rl"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; + EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.1"; sha256="0n23pkn7nfxd9bxhy2fggzadb034g31n4mcwcrvr366d40hqv3iq"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; EMMIXmfa = derive2 { name="EMMIXmfa"; version="2.0.7"; sha256="178j76acdksajnh65l60l94zd4l8s3xmrj2am1h4i5g3jmmrj16i"; depends=[]; }; EMMIXskew = derive2 { name="EMMIXskew"; version="1.0.3"; sha256="05y1ivbzbsfab90925l3ahzd3b8y5kjfk3f0p2s9s3sfyxphqah7"; depends=[KernSmooth lattice mvtnorm]; }; - EMMIXuskew = derive2 { name="EMMIXuskew"; version="0.11-6"; sha256="0japf0l0sj84jna7b5kirp6pgqa4c923ldwphb16ch2xxrgk5n5k"; depends=[MASS]; }; EMMLi = derive2 { name="EMMLi"; version="0.0.3"; sha256="1b36kyzvrdljmkysggv8jyaip78pj32ms0xhj2y568hd419lkh2p"; depends=[]; }; EMMREML = derive2 { name="EMMREML"; version="3.1"; sha256="0qwj4jlfhppjxwcjldh49b6idnagazrxybaid3k2c269wvxwvddq"; depends=[Matrix]; }; EMP = derive2 { name="EMP"; version="2.0.2"; sha256="0l9wyxmcl8b6jiykc4mim6npmz5wrsapk2wgxbfhg27dwdb847ha"; depends=[ROCR]; }; @@ -1090,7 +1095,7 @@ in with self; { ESGtoolkit = derive2 { name="ESGtoolkit"; version="0.1"; sha256="0r09arhsvamdyahini5yhgc43msdxwvn45l57xbfszahsnr3b3aq"; depends=[CDVine ggplot2 gridExtra Rcpp reshape2 ycinterextra]; }; ESKNN = derive2 { name="ESKNN"; version="1.0"; sha256="1w43v3q9i7dkx1qwcl5cgh9wdgg5r4s7vfbkk0vcsq9qd8nbcvfy"; depends=[caret]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; - ETAS = derive2 { name="ETAS"; version="0.4.5"; sha256="1gz6pzhp06j6dlayfhiyrp4kz4548wmxj1zv8harpklpws64r31a"; depends=[fields goftest lattice maps Rcpp spatstat]; }; + ETAS = derive2 { name="ETAS"; version="0.4.6"; sha256="02xknf7acpha4y2mwn9q974dr2d75nw48wx28i7gprqc7hf6rcsw"; depends=[fields goftest lattice maps Rcpp spatstat]; }; ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.4.1"; sha256="07wqrg7mnxmbdf2ibxj5kppl4sd3l608yfhbbsngkhpsrm203qva"; depends=[bit ff]; }; EValue = derive2 { name="EValue"; version="1.1.5"; sha256="0lfm3458mh1rfcxhr4gm8gls9lssy277fxi5rbkysls88282j4dc"; depends=[devtools ggplot2 metafor msm]; }; @@ -1098,7 +1103,7 @@ in with self; { EWGoF = derive2 { name="EWGoF"; version="2.2.1"; sha256="0n1fx6k9ndb2s9ybzizbqz662c9s1f48q6v697pqhnfy9si1nplz"; depends=[Rcpp]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="1.0.0"; sha256="0a74wnmxbvnm1zil0slg4kphvqc1n03y26zp1a0gpawpkfxcmbch"; depends=[ada doParallel e1071 GA gbm mlbench]; }; - Eagle = derive2 { name="Eagle"; version="1.2.0"; sha256="1h0i4qxww3cnnmbyyg0lmzsqj8rq4v8sva7x8s2x7cm59qzwhin7"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; + Eagle = derive2 { name="Eagle"; version="1.3.0"; sha256="1vafvbbclqjp82hgygb6fs84acfcmqlns12rf02abmzb5c080y8q"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; @@ -1116,7 +1121,8 @@ in with self; { Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; }; EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; EdSurvey = derive2 { name="EdSurvey"; version="2.2.2"; sha256="03pnqkzl6f6cryz2gb7qlwrb8av3qcfm2ia3hr6hazxlgz541xng"; depends=[car data_table Formula glm2 haven LaF lfactors lme4 MASS Matrix NAEPprimer RColorBrewer readr readxl rvest stringi stringr tibble wCorr WeMix xml2 xtable]; }; - EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-2"; sha256="1vkg5gi0gysnw0gz9ah8pdnnlkdfsz0jy53ps2jnnpy8lbr45zc9"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; + EditImputeCont = derive2 { name="EditImputeCont"; version="1.1.1"; sha256="1l19k9741p4yjnyiyfg7c064q7j64bzqf3bl6flllmj6qm8v0lwk"; depends=[editrules igraph Rcpp]; }; + EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-3"; sha256="05yydwi40m5hrda01l9nj8y3d85l2n04nr39k1kni4zbciinls2b"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; EffectStars = derive2 { name="EffectStars"; version="1.9"; sha256="15n5mrba2s0qxcg3zikfwpxqwv38h39zmvj8sz62ni4pdhrhhjh3"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-2"; sha256="0121zb627zwkgbb84sn2dclph56dc5rkfjpci5xwd0w99vh3q66l"; depends=[miscTools VGAM]; }; EffectTreat = derive2 { name="EffectTreat"; version="0.4"; sha256="05r8frrir2dnivj21raczchf9qligqdccnnpj1kwi0zgr5h4spz6"; depends=[]; }; @@ -1126,7 +1132,6 @@ in with self; { ElemStatLearn = derive2 { name="ElemStatLearn"; version="2015.6.26"; sha256="0r8d0fm4yx7iawcsikksd7i01kbyqz3xkdls74f3ngkvj4iq1rqc"; depends=[]; }; EloChoice = derive2 { name="EloChoice"; version="0.29"; sha256="1r54laim7i8hzgyir47xq7qw8hxzsdw1ss10sljq1rm2lpsci6wk"; depends=[Rcpp RcppArmadillo]; }; EloOptimized = derive2 { name="EloOptimized"; version="0.3.0"; sha256="185vh8h6r5wqcbaq3glq8k3fr8jp6h3q2h2ly54agi6bi3fvbs05"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang rlist]; }; - EloRating = derive2 { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; Emcdf = derive2 { name="Emcdf"; version="0.1.2"; sha256="0jb59jp1drcwipmk6yzg0cl366i8nhffa13c3x3fmhaj7ifv77vv"; depends=[lattice Rcpp]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.1.1"; sha256="1fid29ipmrq2557wcva1miifgwxdcm8g27ws5wb1lq6yiaz0z4w0"; depends=[doParallel foreach lattice shiny xts zoo]; }; @@ -1148,7 +1153,6 @@ in with self; { EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; Epi = derive2 { name="Epi"; version="2.32"; sha256="14n24xlm7pwdc54w2hlpjhfal1zpzm87rv3rjfckiz47d3w7dwqm"; depends=[cmprsk data_table etm MASS Matrix mgcv numDeriv plyr survival zoo]; }; - EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.12.0"; sha256="1i84fslz8sdngvkv34zhzjwzrzzxx6f4s31p8f5smmf028jlpyys"; depends=[]; }; EpiCurve = derive2 { name="EpiCurve"; version="2.1-1"; sha256="0y6llpxa8xyfn9cxhq35mzfp1gc7la1708q85q4hz0l115abvk92"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.0"; sha256="0hpysjl8wfgylbp4ddxmi5msvlp1w70c6pxggc2bwdgap3s127f3"; depends=[deSolve ggplot2 reshape2]; }; @@ -1179,7 +1183,7 @@ in with self; { EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; ExPanDaR = derive2 { name="ExPanDaR"; version="0.3.0"; sha256="1d6jzgdyawyvs72jxlw4dxkk6566ya67p6lsj70wdakmaixwfsmj"; depends=[corrplot dplyr DT ggplot2 Hmisc kableExtra lfe lmtest multiwayvcov PKI rio scales shiny shinycssloaders stargazer tictoc tidyr]; }; - ExPosition = derive2 { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; }; + ExPosition = derive2 { name="ExPosition"; version="2.8.23"; sha256="0x9400ggmgrnaish0cfgnyvw549g4ibfv9aj6vzq7j68n58vq405"; depends=[prettyGraphs]; }; Exact = derive2 { name="Exact"; version="1.7"; sha256="0d0h406w2l99gxq6pmh9crxxrvdidcajk7bqzmifl7nfb77vp1av"; depends=[]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; @@ -1222,16 +1226,16 @@ in with self; { FHtest = derive2 { name="FHtest"; version="1.4"; sha256="1wsn0j9ydpp9nfswiqg21p09kgkvaq8fh0y0h8syqgizah7i8vs2"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; FIACH = derive2 { name="FIACH"; version="0.1.2"; sha256="151lc5m8pb7l07kxljm32zy5kd7a4zr5vgsgwsx7ywhijh0r0585"; depends=[Rcpp RcppArmadillo RNiftyReg tkrplot]; }; - FIAR = derive2 { name="FIAR"; version="0.6"; sha256="1rqwxzya77yydp6kas5ic54nwvn8wmsn14p0s16xhy1mqxykysnb"; depends=[lavaan Matrix np]; }; FILEST = derive2 { name="FILEST"; version="1.0.3"; sha256="0i622rfr9sb22c922kk0gg4l1akx54m6zx7wy3w1p5xrr1zjjyvp"; depends=[KRIS rARPACK]; }; - FIT = derive2 { name="FIT"; version="0.0.5"; sha256="1hky7m5b7n0d7lm79b7l7p055f8zfl7gsjdvbq09c4iwdli8h33n"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; + FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; }; FKF = derive2 { name="FKF"; version="0.1.5"; sha256="1qzf7y3f4xfirjkm795rcxckjbw6sn7xpilhkyvayqm2vyhf7518"; depends=[RUnit]; }; FLAME = derive2 { name="FLAME"; version="1.0.0"; sha256="0va9mbwlnvr64hii203rmq4x3izpix0x36kpsns43yb9wdqq70hv"; depends=[dplyr gmp lattice latticeExtra reticulate rlang RPostgreSQL RSQLite]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; - FLSSS = derive2 { name="FLSSS"; version="7.7"; sha256="09zinc1z4k3vdk7qyrsya8l1zlwg04d1v7n3wmal6c75vdgam6x3"; depends=[Rcpp RcppParallel]; }; + FLSSS = derive2 { name="FLSSS"; version="8.5.2"; sha256="0ligxax4nqhpmn3jp628f6572800lgxjqii78llvj0j927y3fapa"; depends=[Rcpp RcppParallel]; }; FLightR = derive2 { name="FLightR"; version="0.4.7"; sha256="0qnhyn363c8yb541ngygm5jzax1csjdq0mmvvvazncirgk45q9y5"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; + FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; }; FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; FME = derive2 { name="FME"; version="1.3.5"; sha256="1r1mb61hylsgcryac35bz1pzfcw27gzpvfwkkf0sh754ya6xh69n"; depends=[coda deSolve MASS minpack_lm minqa rootSolve]; }; FMP = derive2 { name="FMP"; version="1.4"; sha256="0w11a78nz4n7zih9h00xkv7prsy9hlxphbpa7hpnbvq9r98g08qm"; depends=[]; }; @@ -1245,7 +1249,6 @@ in with self; { FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; FRAPO = derive2 { name="FRAPO"; version="0.4-1"; sha256="0mjcrplxr0cyybp5hzzwbq5j03w0f3iiiv1yk7mdqr5gb368dchq"; depends=[cccp Rglpk timeSeries]; }; FRCC = derive2 { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[calibrate CCP corpcor MASS]; }; - FREGAT = derive2 { name="FREGAT"; version="1.1.0"; sha256="04rcbwbwi53d8his0ss9hj4s2c28r292f4f2ayl70av7k74nnccy"; depends=[Matrix]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.1.0"; sha256="1gi637fwfpwbghms96bmfqs7zirjskd9hxiw43s0765h3ypjqwx1"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; FRK = derive2 { name="FRK"; version="0.2.2"; sha256="0m0ngxanyq19myzza4fb75k9vb67mv17iny847bv9qrgg2vbm5r8"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; }; @@ -1266,7 +1269,7 @@ in with self; { FactoClass = derive2 { name="FactoClass"; version="1.2.7"; sha256="0hvlr9cw6wfckl8rzl5qqyp0h8rv8gcnyj6x930jq7h44kj0ji7d"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.3"; sha256="1924f5sfadgs47ja1ljwqm3slnmqqz1pwxhh9cn1rg1hi8g7db6f"; depends=[FactoMineR rmarkdown rrcov]; }; FactoMineR = derive2 { name="FactoMineR"; version="1.41"; sha256="1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; }; - FactorsR = derive2 { name="FactorsR"; version="1.3"; sha256="1sma1v3flnazwq1vs8p5cbi2g34758w5wxwnbwxlpzprwhmr8qrn"; depends=[]; }; + FactorsR = derive2 { name="FactorsR"; version="1.4"; sha256="1nw63j9bi4x09pgdvdml0w0qxfy1dda5hkxbhd3d6f7rky1z0nyf"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="1.0.7"; sha256="1s4pnikv6n767z2x8s5gqqsj64yf9ivpdb5xw0qviizf9qwg8yvi"; depends=[colourpicker FactoMineR shiny]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FamEvent = derive2 { name="FamEvent"; version="1.3"; sha256="0jf4ph9mskycyckyg9biy0h1zk5q6nvj8669zfh8nfnnn2yh3s48"; depends=[kinship2 MASS survival truncnorm]; }; @@ -1275,6 +1278,7 @@ in with self; { FarmTest = derive2 { name="FarmTest"; version="1.0.3"; sha256="1lpl49bhnch3i56z1lrvn55qr4dimc4xp8jm3w3xiccxkpr933jj"; depends=[Rcpp RcppArmadillo]; }; FastBandChol = derive2 { name="FastBandChol"; version="0.1.1"; sha256="1hlgipn792vaylvc0r44clkjcnkns6p241a1fs8sb3gpq81naazk"; depends=[Rcpp RcppArmadillo]; }; FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; + FastGaSP = derive2 { name="FastGaSP"; version="0.5.0"; sha256="1k7ylybl6xh5ha4zjk23ysx9cwy76llab11pphsmfr14rn5dxch1"; depends=[Rcpp RcppEigen RobustGaSP]; }; FastHCS = derive2 { name="FastHCS"; version="0.0.6"; sha256="0ds0g2lbzc33is8g8yxfs6hpvl2zdrgi9fqa7c71c3b3fwn9cqlv"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; FastImputation = derive2 { name="FastImputation"; version="2.0"; sha256="0zhin8000c78kba6zly9mvpxdxx68kcsh2hn697pxkl73wqsz3p5"; depends=[Matrix]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; @@ -1288,7 +1292,7 @@ in with self; { FateID = derive2 { name="FateID"; version="0.1.5"; sha256="0yqg3i058852l75dqlbkb04z8flbc8wn9l9jhc1r03jqxg1vjg2p"; depends=[lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som]; }; FeaLect = derive2 { name="FeaLect"; version="1.14"; sha256="1h6jc8n57mvyz3gi2jdx5xacwv5iim5sx86qzrg3v1higfr54b1l"; depends=[lars rms]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.3"; sha256="0k8n3c0yiz6bb9rq6ra8z2hypb4hw4qcsdfbrgrw74kqivscs62i"; depends=[BH digest magrittr Matrix Rcpp]; }; - FedData = derive2 { name="FedData"; version="2.5.5"; sha256="0krfz76mxw0dybm4adqf5mg53g8gpypp5sk2z99s7b54w196cmqh"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; }; + FedData = derive2 { name="FedData"; version="2.5.6"; sha256="14dp3fs1xzirxj2qys4h01z7mvwddgdwysawilgpkk33q0w0ysay"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph jsonlite lubridate magrittr ncdf4 raster readr rgdal rgeos sf sp stringr tibble xml2]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.4"; sha256="1mcsr48hvrpfnk2f0z1bc8556jf848bpd8prm3y46gqdj452wpmm"; depends=[geoR mapdata maps proj4 sp]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.5"; sha256="05n8lvx3cs1ckliaj7ni2rbfcrdl7d0pzf9bkwlyd1779h684cxz"; depends=[data_table devEMF ggplot2 gridExtra plyr png sqldf stringr]; }; FiRE = derive2 { name="FiRE"; version="1.0"; sha256="0biy53i10yj261p3y55q7mdkd8g20smszd2dx36z1jkkfr61hy84"; depends=[BH Rcpp]; }; @@ -1306,13 +1310,14 @@ in with self; { FishResp = derive2 { name="FishResp"; version="1.0.2"; sha256="0ljibh3nchrlyq2bihaxacpqvw0simw6q4i9rv8lf04viyrbvi6y"; depends=[chron lattice mclust respirometry rMR]; }; FisherEM = derive2 { name="FisherEM"; version="1.5.1"; sha256="1s7gfdw840f51mn76jvcnwpwcf3dzf2w81wlyxqkij45sink92yz"; depends=[elasticnet MASS]; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; - FitARMA = derive2 { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; }; + FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.5"; sha256="1jnkbb52g3avs0pm37g5qn4m3ssn2qc6adr8xp5z7ahsbkffkyw2"; depends=[MASS]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; FlexGAM = derive2 { name="FlexGAM"; version="0.7.0"; sha256="1pjlsi747j347vwn94391xr3aknnspgw7rc1jnin7g0n1fgkcww4"; depends=[MASS Matrix mgcv scam]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-5"; sha256="1404cn3bhcdr3mjhpr072zcyl0wnksarsg2sry5d1scsmrn4xq83"; depends=[nlme]; }; FlexScan = derive2 { name="FlexScan"; version="0.1.0"; sha256="02p8rh3krh30hmzykm03qvm0g1qcrqzcgzlzlww61pswd9j1g53m"; depends=[smerc sp spdep]; }; + FlickrAPI = derive2 { name="FlickrAPI"; version="0.1.0.0"; sha256="0bbk7ac4s3gbcjhfg3yz06pxjid3hpd0mqzxzlj5sghn95f479h9"; depends=[jsonlite magrittr RCurl stringr]; }; FloodMapper = derive2 { name="FloodMapper"; version="1.0"; sha256="09pr6324namqrwdr2impgqmdmsf34g9pq91091cg9b1031djgzyq"; depends=[magick raster rgdal sp]; }; FlowRegEnvCost = derive2 { name="FlowRegEnvCost"; version="0.1.1"; sha256="0lw4kv4z0s23jy11y53rxxh7zxa7vajxrcnjgxd74xxs64vjlj88"; depends=[zoo]; }; FlowScreen = derive2 { name="FlowScreen"; version="1.2.5"; sha256="1kslqvxm73s8fvhf6ahmxmjgs73b78lcbcf4af1cp7axksp4bv8v"; depends=[changepoint evir zyp]; }; @@ -1322,8 +1327,7 @@ in with self; { ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; ForecastComb = derive2 { name="ForecastComb"; version="1.3.1"; sha256="07cbiv172mpkwvg6svhwgavlfy2144ir3y1l7w37wbd0ygs514id"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; - ForecastFramework = derive2 { name="ForecastFramework"; version="0.9.0"; sha256="131h9f148wn89znzsnym43amlvf4s7jzg4f2p7ld9ns7727sf56q"; depends=[abind dplyr lubridate magrittr R6 reshape2]; }; - ForestGapR = derive2 { name="ForestGapR"; version="0.0.1"; sha256="0dm7jv9zgw5wsqllah9im2nm1grvmf2d9g6z8fcjvbc1rh7admz0"; depends=[igraph raster sp VGAM viridis]; }; + ForestGapR = derive2 { name="ForestGapR"; version="0.0.2"; sha256="0xig9nal83xg312kgq6dhi7n67sa8ixlnh79x957w3n5rv9kdyf2"; depends=[igraph raster rgeos sp spatstat VGAM viridis]; }; ForestTools = derive2 { name="ForestTools"; version="0.2.0"; sha256="0q9nk9n001bnz5hd8cxj6wmaf8c7g0kwfkpa0hk6ap42666rrrah"; depends=[APfun imager raster rgeos sp]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive2 { name="Formula"; version="1.2-3"; sha256="0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l"; depends=[]; }; @@ -1348,7 +1352,7 @@ in with self; { FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.1"; sha256="056k3gr257qg5wzcgaw0ad5y5cfzdlqkfypl170f0yy0l7gfzag1"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-5"; sha256="1achmsc107b26d266q0vmip8vi3qaa5z0p183z2fjdm7zh9ch6ag"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; - FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-2"; sha256="0nvnz5df25slqdwnlw1fdv3xx9sz980x71805h8baw32ajg28a72"; depends=[]; }; + FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-6"; sha256="1zba28kmzpcza099k1ck7aqn7ms2fh3ijcn05xdimvssjbhsag81"; depends=[]; }; FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.1"; sha256="08mhwzyksw0snxxcwn2kg62ya8smfvrls30znqhmnbkn5ijz0642"; depends=[plyr shiny]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.3"; sha256="0ry2cr5ds7kd7vk6ihdg68gqs2rv6qfmzlszr33a9ia5gsbi8b7b"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; @@ -1356,18 +1360,18 @@ in with self; { FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; G1DBN = derive2 { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[igraph MASS]; }; G2Sd = derive2 { name="G2Sd"; version="2.1.5"; sha256="165i6x2k56vwhk5p2p5m9vjmp9flblsapjdlz7nw9b719l6xz5zk"; depends=[ggplot2 reshape2 rJava shiny xlsx xlsxjars]; }; - GA = derive2 { name="GA"; version="3.1.1"; sha256="0048ahd6yla5h67lhxqjh7lmdww6qgi7b830nlk997dyi82drmdz"; depends=[cli crayon foreach iterators Rcpp RcppArmadillo]; }; + GA = derive2 { name="GA"; version="3.2"; sha256="1v3mdbzcqhlclmj9bz94qcmxwznwwp8v5pb20clacgja6nwh3867"; depends=[cli crayon foreach iterators Rcpp RcppArmadillo]; }; GABi = derive2 { name="GABi"; version="0.1"; sha256="1zmiaqbd1jrpiz9hk16s8rggcpl3xyyhjkkdliymx2p42vy5b5mf"; depends=[hash]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; - GADMTools = derive2 { name="GADMTools"; version="3.0-1"; sha256="0s2kpkp5214cbrya97x84cb1nr5zfvfafpwfc2dkhf1a417i6qla"; depends=[classInt dplyr ggmap ggplot2 gridExtra jsonlite lattice maptools raster RColorBrewer rgdal rgeos rosm sp stringr]; }; + GADMTools = derive2 { name="GADMTools"; version="3.5-1"; sha256="1hjar8i4vxhbqsljnhiz5nl7jcqqkzyqmjr2yrfqa7frmcix65ll"; depends=[classInt dplyr ggmap ggplot2 ggspatial gridExtra jsonlite lattice maptools prettymapr raster RColorBrewer rgdal rgeos rosm sf sp stringr tidyverse]; }; GAIPE = derive2 { name="GAIPE"; version="1.0"; sha256="04iarbwxrhn48bk329wxis7ifzndi67kpjx6dcakawkh3g2mzsfz"; depends=[]; }; GAMBoost = derive2 { name="GAMBoost"; version="1.2-3"; sha256="0450h9zf12r524lxk1lrv9imvvkk6fmyd3chnxp18nnvys7215pv"; depends=[Matrix]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; GANPA = derive2 { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gacf1r4z0ckiliz57cbrqwh7z2wpa"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; GAR = derive2 { name="GAR"; version="1.1"; sha256="12xgk87bndinx7ibaasn51a9fad3ymvpjmixa7l18pfy99l3pcll"; depends=[httr jsonlite]; }; - GAS = derive2 { name="GAS"; version="0.2.9"; sha256="1h588g4khqhc0laxdqmzjz4zilb2gww9xkm0p7d59k9b70k7wbcx"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; + GAS = derive2 { name="GAS"; version="0.3.0"; sha256="0qyawq0chwj5xvzczn5vsakis9qdvwjdx3xdfjl5k233rk2hs7nk"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GAparsimony = derive2 { name="GAparsimony"; version="0.9.2"; sha256="0c8al4kw1fd9krninpxijg99lhfmlw4mf2623md2and25r6ixlld"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; @@ -1381,7 +1385,7 @@ in with self; { GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; - GDINA = derive2 { name="GDINA"; version="2.2.0"; sha256="0i59ghzhwd9yz0kvb0c7m7rir99qlv5sizp6fzxk0q3rvnfm0syc"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; + GDINA = derive2 { name="GDINA"; version="2.3.2"; sha256="1cidawm6ccj86k9f0f2lrfll2xzx7l0sgj0rzld8nl3yaj3kllpv"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.1"; sha256="1akgl4j38x4qf3z9d6z7cgjd7x9f0k3lrzyrzgykqhrzmbh68z2m"; depends=[gee]; }; GENEAclassify = derive2 { name="GENEAclassify"; version="1.4.16"; sha256="19j06q2igd261qmnwc35mprpr4ljcwia14wvj9rky9rj6fhklfr2"; depends=[changepoint GENEAread MASS rpart signal]; }; @@ -1395,7 +1399,7 @@ in with self; { GESTr = derive2 { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; }; GEVStableGarch = derive2 { name="GEVStableGarch"; version="1.1"; sha256="1iypv0k4cbvsdyglgvf7y52sqvl5qcin627pjqwq42kisqynm8d7"; depends=[fExtremes fGarch Rsolnp skewt stabledist timeDate timeSeries]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.6"; sha256="09lzhh16r1hsxa23jkq716yf3x9ap6fkkrz3ij2x83rvwznj8hb3"; depends=[VGAM]; }; - GEint = derive2 { name="GEint"; version="0.1.4"; sha256="0xwp8hqds4lf6nb8hcbvsj2000w7f90bi62b1v3iry0y6cbpwbjg"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; }; + GEint = derive2 { name="GEint"; version="0.1.5"; sha256="179gpq4qjhgx1fhyjdb80rf2ip80zhhfyn8xjgwq1a425163q1y7"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; }; GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; }; GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.2.6"; sha256="1z98j6nvaa4vrh840q1iy5r0h9ns4xbrk3qfkq51l2kmbrck8r7a"; depends=[magic MASS Matrix plotrix plyr]; }; @@ -1404,7 +1408,7 @@ in with self; { GFORCE = derive2 { name="GFORCE"; version="0.1.2"; sha256="1bxc0id3vivva4d62h468vv4zrvjgzh91mlm97ga9qnlhd1r20wr"; depends=[lpSolve MASS]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="1.7-1"; sha256="07y8h9lqr5i6h8mvwnzlpswi5sd9zx1vc5xpn37rzxbqs1acrp6z"; depends=[data_table Rcpp]; }; + GGIR = derive2 { name="GGIR"; version="1.8-1"; sha256="10ki1p1gv1j2dg4b5zn1f6ipbq6wfz60n0lfrqpmp3wkvwqnxnxf"; depends=[data_table Rcpp]; }; GGMM = derive2 { name="GGMM"; version="1.0.0"; sha256="18haggjagp0bwy451ghz18nbjgp8zdw1m9iavjj38s57igs611n4"; depends=[equSA huge mvtnorm]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; GGMselect = derive2 { name="GGMselect"; version="0.1-12.1"; sha256="0nrkbai9jps54ldx3cvwd4x4wingfj73najwx4bv98z8zxpbnky5"; depends=[gtools lars mvtnorm]; }; @@ -1412,16 +1416,15 @@ in with self; { GGally = derive2 { name="GGally"; version="1.4.0"; sha256="1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape rlang]; }; GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; GHS = derive2 { name="GHS"; version="0.1"; sha256="1khjfy62a67r59s2rax9mmnqy5xnnwhbydzhqwwmyspl48mxycdj"; depends=[MASS]; }; - GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.5"; sha256="0mx4n4kf34343yiww80fw5yy0x624xsj71n8fr4dm0a2338pxq8v"; depends=[]; }; GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; GJRM = derive2 { name="GJRM"; version="0.1-5"; sha256="08b58q2fhh8j45b9vr7by7sps8z5qp64lv30bbz6p84m648mr04r"; depends=[copula distrEx gamlss_dist ggplot2 magic matrixcalc matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.5"; sha256="0mr8qhccp8dndp43v8ym22f4djrjr8qcxbv61lwabk2462llwln6"; depends=[cluster]; }; GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; - GLIDE = derive2 { name="GLIDE"; version="1.0.1"; sha256="02pmn0ydrmblgchz189avlrz3zaz0qfhy75d945yphpmvjf9f9m5"; depends=[doParallel foreach MASS]; }; + GLIDE = derive2 { name="GLIDE"; version="1.0.2"; sha256="1z5h8br6aig24g5gsh8h6npm269id3h5gjjyf5avs4v08b51rpcv"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; - GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.4-0"; sha256="0ny3sj87cwgsx1ipvs6jnsa7cjb1yq6fjkcd5pzfvgi0bsqra65y"; depends=[MASS nlme]; }; + GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.5-1"; sha256="1zxp3r22755k6k65r60856yifrki8kz6n7h4mnjdgszpqk0mmgwx"; depends=[MASS nlme]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLMsData = derive2 { name="GLMsData"; version="1.0.0"; sha256="12q41zxniblzys20vjrf5skj8cbzlwb92mwk6jvnyd86lc70bsh1"; depends=[]; }; GLSE = derive2 { name="GLSE"; version="0.1.0"; sha256="1snzcz637ppz3lkg1575ln3shfidkrnynqh1d8b5rk0z0974bpm1"; depends=[gRbase igraph mvtnorm]; }; @@ -1430,8 +1433,10 @@ in with self; { GMCM = derive2 { name="GMCM"; version="1.3.0"; sha256="0yb7zvw0a1qaa3j7f5pfix66barhkc1s4x8b8hdhfmi8cggcdisn"; depends=[ellipse Rcpp RcppArmadillo]; }; GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; GMDH2 = derive2 { name="GMDH2"; version="1.4"; sha256="13vbzqxmqvp39rbxw41nqfrmk0w6w8qc9nzgfbfpc07h3gcwva41"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; + GMMAT = derive2 { name="GMMAT"; version="1.0.3"; sha256="0vspvf2d81flzkhb2f1rjds3ws7bj2v7cb9df5ziq7h77krhlhg4"; depends=[CompQuadForm foreach Rcpp RcppArmadillo SeqArray SeqVarTools]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; }; GMSE = derive2 { name="GMSE"; version="0.4.0.7"; sha256="00fws183mndi2zdfkcsdki3nbd983y9g35fgxkacjck9mpn48an3"; depends=[shiny shinydashboard shinyjs]; }; + GMSimpute = derive2 { name="GMSimpute"; version="0.0.1.0"; sha256="1hmn5ss81df9j9ibgibs95j98irqzif94vq0c861mq4a65y59fcp"; depends=[ggplot2 glmnet reshape2]; }; GNAR = derive2 { name="GNAR"; version="0.2.9"; sha256="05pf0n1sxdyv9gc833igcrl1ms2rqdxfhg2w4kb0jiy0v4b8yafp"; depends=[igraph wordcloud]; }; GNE = derive2 { name="GNE"; version="0.99-2"; sha256="16mivsa4r8d2cg5qsh5rpg2244f74zk2ln3vbys7ivjgnjpjn7z8"; depends=[alabama BB nleqslv SQUAREM]; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; @@ -1444,10 +1449,10 @@ in with self; { GPFDA = derive2 { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; }; GPGame = derive2 { name="GPGame"; version="1.1.0"; sha256="00qiqd7p84k22wbmlmj8a81fy5m5rl6afhj2q61j0akicnbzjfw9"; depends=[DiceDesign DiceKriging GPareto KrigInv MASS mnormt mvtnorm Rcpp]; }; GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; - GPM = derive2 { name="GPM"; version="2.0.0"; sha256="0pnjhqcn9gjy4vi98lilvjrpg0qfslz36ywv50cv0ndbqqcl8mv9"; depends=[lattice lhs randtoolbox Rcpp RcppArmadillo]; }; + GPM = derive2 { name="GPM"; version="3.0.0"; sha256="0g5hb6iyg1p5kj14cizfrdql02z2yrlkyfhzbpq62p0bs9kb9nch"; depends=[doParallel foreach iterators lattice lhs pracma randtoolbox Rcpp RcppArmadillo]; }; GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPareto = derive2 { name="GPareto"; version="1.1.2"; sha256="0vwnn2hm8k6bdds91id1fri2pda7apqfmad0yrk0i2arfm8krzfp"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; - GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; + GPfit = derive2 { name="GPfit"; version="1.0-6"; sha256="1jg2yjy05jgvw696nr6ykmz7ln6ydlmm59g1db6l7fjh9wi53asw"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.2"; sha256="1hhwdpish8j3j9y5q6r5pdsl1kpbwp1hjhcq24iiz4lfssib4k9f"; depends=[deSolve rgl]; }; GPrank = derive2 { name="GPrank"; version="0.1.4"; sha256="06j5fk427jkp5lphqlx48vfp4fagnxxnv4iyjcha8nvkswcblwgy"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; GPvam = derive2 { name="GPvam"; version="3.0-5"; sha256="0inhhx5ll4ybkwp71ijigxlyxsa0rdyxb38kgfgxb588dsk4scjz"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; @@ -1459,16 +1464,16 @@ in with self; { GROAN = derive2 { name="GROAN"; version="1.2.0"; sha256="14n3k1wwz5pn82wcj00cdns4bp699f58k1nj8hp8jn0q7xr2sgv5"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; - GSA = derive2 { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; }; + GSA = derive2 { name="GSA"; version="1.03.1"; sha256="05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1"; depends=[]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; GSE = derive2 { name="GSE"; version="4.1"; sha256="00pvpramk7n3195i3vkmp982igyc1b0xzjqs7xdsvzsnfv7kpcbh"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; }; GSED = derive2 { name="GSED"; version="2.0"; sha256="1kf94ywr4c1c65aa2yhr0jngn5v1jql3wfs6hxzxpnsrsr04krcf"; depends=[memoise rootSolve survival]; }; - GSIF = derive2 { name="GSIF"; version="0.5-4"; sha256="1vh3dffi5hakk32rwaabw9k34wigd0n5bhzcyqhadl6fxjsaz6b6"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; + GSIF = derive2 { name="GSIF"; version="0.5-5"; sha256="104v01yifpagj7kyjfy80c4dgn9wv76py0av90vmgc55qynmvv19"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; }; - GSODR = derive2 { name="GSODR"; version="1.3.1"; sha256="1kqkq1dqb9q2cq6wfkpfpwm26smq9x7k78qzpjyxdg0iwzwazcwr"; depends=[curl dplyr future_apply magrittr purrr R_utils readr rlang tibble]; }; + GSODR = derive2 { name="GSODR"; version="1.3.2"; sha256="06narp682zs33gycw1bwgwp2crxk5a345f17n3l9gshgs0gg8x0w"; depends=[curl dplyr future_apply magrittr purrr R_utils readr rlang tibble]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.7"; sha256="0klaczmn3jnlzyh45yaqlc897irjfk467f4w03awmflaiwan3h6v"; depends=[rpanel tkrplot]; }; @@ -1483,19 +1488,18 @@ in with self; { GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.1"; sha256="1g6xmw93jl9cv3c7p76wk3lq8qhqxgjhmn1cgiyyy5jbf14gbasv"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.3"; sha256="16ahlf1pbcpgha50a7ml2c336by50r287kihwshiazshifi5p3n3"; depends=[doParallel foreach]; }; - GWSDAT = derive2 { name="GWSDAT"; version="3.0.1"; sha256="1v93fbbpmbcigi1m9vyzrgcbnrrpgh7h963vicwy9ilzc06vhm68"; depends=[deldir digest geometry Kendall lattice MASS Matrix officer readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; - GWmodel = derive2 { name="GWmodel"; version="2.0-6"; sha256="04im9va0imj8wsl5fzjw7jx7xxvwdr71wqj2m5ar2x3c1k91k2na"; depends=[maptools Rcpp RcppArmadillo robustbase sp spacetime spdep]; }; + GWSDAT = derive2 { name="GWSDAT"; version="3.0.3"; sha256="10xvnnhqjs2p1r6yzflhkfi4985ljs57k5k8r6g85y2hq46m80p8"; depends=[deldir digest geometry Kendall lattice MASS Matrix officer readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; + GWmodel = derive2 { name="GWmodel"; version="2.0-7"; sha256="0md21ggnzm0vw65klfz3cj19x5bg5cb55sax68qxbamgjkbc37xz"; depends=[maptools Rcpp RcppArmadillo robustbase sp spacetime spdep]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; GameTheory = derive2 { name="GameTheory"; version="2.7"; sha256="0vb7sjia5s58gw9zpkzddps8knxvbrz7fbi3m6digl8bf5vwhxxw"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; - Gammareg = derive2 { name="Gammareg"; version="1.0"; sha256="1a5wibnbd8jg0v8577n1x9kc358qpd4jz7l8h7r541sdpprm6wb0"; depends=[]; }; GauPro = derive2 { name="GauPro"; version="0.2.2"; sha256="127agnhqbbavcf7sx0zq1c8ldh3w1d1iz5bpd1ixxkyaapmiq4qy"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-1"; sha256="1xjz22m4yn642m0bqa33w4m2rygpxjwg43c54lw168jck9zzgv1f"; depends=[nlme raster rgeos sp spatialEco spdep]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.1.5"; sha256="0d3y9kc2njsbzdngv67d4qrdsnn7nsxph5acc09vmwxpv1cyhxiw"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; }; - GenEst = derive2 { name="GenEst"; version="1.2.1"; sha256="037630akjvnzcgjdkqvz6dav4yxx4xs7plg4va4x9rdh0rkw6bax"; depends=[cbinom corpus DT gsl gtools htmltools lubridate matrixStats mvtnorm Rcpp shiny shinyjs sticky survival]; }; + GenEst = derive2 { name="GenEst"; version="1.2.2"; sha256="0p8dfya06h6iqjsvlh6rzjvarjb2w1ql915j68f0iiczzlm6419v"; depends=[cbinom corpus DT gsl gtools htmltools lubridate matrixStats mvtnorm Rcpp shiny shinyjs sticky survival]; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; @@ -1505,15 +1509,14 @@ in with self; { GeneCycle = derive2 { name="GeneCycle"; version="1.1.2"; sha256="1ghdzdddbv6cnxqd08amy4c4s5jsxa637r828ygffk6z76xjr6b6"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; GeneNet = derive2 { name="GeneNet"; version="1.2.13"; sha256="0w52apk0nnr8nsskf26ff7ana8xiksr8wqmkjxzwhzgg7fncm61p"; depends=[corpcor fdrtool longitudinal]; }; - GeneReg = derive2 { name="GeneReg"; version="1.1.2"; sha256="081qc66mb17dwk886x9l2z4imklxnfs02yqql0ri9c47bpsga7wp"; depends=[igraph]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; - GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.1.2"; sha256="13dyzd2xspiw709iq1xw8lsik8q7abz327x11cdn02zalizvw5ip"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.1.5"; sha256="0a4wpn1zqw1aiygin43lrq55kb7z6macgi2hl5vng9wnx2gl9jiq"; depends=[ggplot2 Rcpp RcppArmadillo]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; - GenomicTools = derive2 { name="GenomicTools"; version="0.2.6"; sha256="19illcfcm34vr90kh4cbdwf7k8hy700dlzylsaicv3h4xi7iydgs"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; - GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.2"; sha256="1snv2z95v7lyvzpssjsjpy4163k6imfjbb0svm8icsb85mpyj7af"; depends=[data_table snpStats]; }; + GenomicTools = derive2 { name="GenomicTools"; version="0.2.8"; sha256="060i014x2d7588vl7k0s66hphk23c1y7svcpv58lwwpal96v5cm0"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; }; + GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.4"; sha256="10g47rbqrnfa47fj2g45m79zrxx56fk2z9abzch91m134xhi8qja"; depends=[data_table snpStats]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoGenetix = derive2 { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; }; @@ -1522,7 +1525,7 @@ in with self; { GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; GerminaR = derive2 { name="GerminaR"; version="1.2"; sha256="10x22xl3r93i5mc6w7m5mqm3z386dsffwrb8h9c1bznrnynnsy63"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr readxl shiny shinydashboard tibble tidyr]; }; - GetDFPData = derive2 { name="GetDFPData"; version="1.2"; sha256="1v87xln890rvgklylziarqp3d4qwkppa9m54v2n9a6cbrfs4v3v9"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; + GetDFPData = derive2 { name="GetDFPData"; version="1.4"; sha256="11qbla55sqdl5cs1bx3cg9igx4ral7zbxlqw7sfm1vgi823d9wgr"; depends=[curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; GetHFData = derive2 { name="GetHFData"; version="1.6"; sha256="1yhj97ag817jd2qzfbk363vmy4qpv1p6343krm3z0c9wjp2i97n5"; depends=[curl dplyr lubridate RCurl readr stringr]; }; GetITRData = derive2 { name="GetITRData"; version="0.7"; sha256="0cmqbncd5bjxgb1r9yvdv2hkx4qdmnpn2a62bgndnaya1yk5050l"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; }; GetLattesData = derive2 { name="GetLattesData"; version="1.2"; sha256="0mwbyb3wk2l4nrzx4n6gbx4h4a1fz7p8kmysbihysdlz8brnr0av"; depends=[curl dplyr readr stringdist stringr XML]; }; @@ -1535,18 +1538,17 @@ in with self; { Gifi = derive2 { name="Gifi"; version="0.3-8"; sha256="04kprdfh74gyc5p8x6ycgv2m6gm47imhf3v4vlxgqj3lmjm2vxp0"; depends=[colorspace]; }; GillespieSSA = derive2 { name="GillespieSSA"; version="0.5-4"; sha256="0bs16g8vm9yrv74g94lj8fdfmf1rjj0f04lcnaya7gyak3jhk36q"; depends=[]; }; GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; - Giza = derive2 { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.0"; sha256="1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn"; depends=[]; }; GmAMisc = derive2 { name="GmAMisc"; version="1.0.0"; sha256="14rs13y509hijg4ars3j55fm0133487alm8b9jlffbz8qiln48g4"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos rworldmap shape sp spatialEco spatstat]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.4"; sha256="0lr1hwprqy9mq5qyp83qqxj8dh5sy487xkqbv2y1qdinzj62pvcn"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; - Gmisc = derive2 { name="Gmisc"; version="1.7"; sha256="09cdr5nwzxp7gl50mlpjxsj7nbi4rbj3hf7hgahskx50qnla1cc3"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown stringr XML]; }; + Gmisc = derive2 { name="Gmisc"; version="1.8"; sha256="1cmlwdvli3g05sdhk8436n5i5ibxsqld9y9lrcl63xr2jxmp9p7n"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown stringr XML]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; GofKmt = derive2 { name="GofKmt"; version="2.0"; sha256="0018ljzlj7nkf12g0sqa8iyq3j2bnj9la3fwblx9lbdn8nxgllhn"; depends=[Rsolnp]; }; GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.2"; sha256="1qwarachkhc2yvjyxfcfbgjc1x9ni5xb7f93zviv8mz3c35bhs3b"; depends=[classInt corrplot]; }; GoogleKnowledgeGraphR = derive2 { name="GoogleKnowledgeGraphR"; version="0.1.0"; sha256="1jxiq1s48skn43pydsw8s67hf70v9fhhw2drcx9vni3c3szs44qd"; depends=[curl jsonlite]; }; - GpGp = derive2 { name="GpGp"; version="0.1.0"; sha256="1z03fcpcjm7waxci4c0a233xs21l2ds3p993y3shp7snbplbrfgf"; depends=[FNN Rcpp]; }; + GpGp = derive2 { name="GpGp"; version="0.1.1"; sha256="1pgbmf68xdbn2j6fxblwhv4m6w2fg91q49rk0v880fiw2hax9csf"; depends=[FNN Rcpp]; }; Grace = derive2 { name="Grace"; version="0.5.3"; sha256="0r41zvgdd5rqm15axqqssik6plwy7snpgw8m32labkfn3f0pp7n0"; depends=[glmnet MASS scalreg]; }; GrammR = derive2 { name="GrammR"; version="1.1.0"; sha256="1rwvgznfxp7d3rzymyljj3pn3z3ggia1bhi4nvpgd79qd4cifi2g"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; GraphFactor = derive2 { name="GraphFactor"; version="1.1"; sha256="1jxibd2d5b6vlq27m9ppmm96wsnkqn4pz66n9pwdl8wg2v85npw5"; depends=[igraph]; }; @@ -1557,7 +1559,7 @@ in with self; { GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.2"; sha256="1x3hnyqq75krlygg82qm0ldd8nsv071nzgr63zkjmifc7hgi0nvb"; depends=[GreedyExperimentalDesignJARs rJava]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; GreedySBTM = derive2 { name="GreedySBTM"; version="1.0"; sha256="1r29cd8nxpyc82rz2xb9mk9wc17gcdlcl9lw1j3y4npr2z0qhf13"; depends=[Rcpp RcppArmadillo]; }; - Greg = derive2 { name="Greg"; version="1.2.2"; sha256="0drp9qf7yid88vcd2q2qdw23l1jynircffqnylznz8xzyh4qv7ik"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; + Greg = derive2 { name="Greg"; version="1.3"; sha256="1npdgcm6w0x7a6s6dl5l250cyvrs5h2y352d1ih8lh575s5nw819"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; GriegSmith = derive2 { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; }; @@ -1571,7 +1573,7 @@ in with self; { HAC = derive2 { name="HAC"; version="1.0-5"; sha256="0dc79qjhyydq0k4d8wvg970hs56i9yhxjrh5ky9a178ya61vw208"; depends=[copula numDeriv]; }; HAP_ROR = derive2 { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[ape hash]; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; - HARModel = derive2 { name="HARModel"; version="0.1"; sha256="182ibz3xhq7wz444rsf1q8rsz1fm8ma8n3wvvb76n12ydc6hx7cr"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; + HARModel = derive2 { name="HARModel"; version="0.2"; sha256="18vjzv6nrvaxv758hakpd9y58byqibd9i7sr6kr6z5lshii8fklv"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; HARtools = derive2 { name="HARtools"; version="0.0.5"; sha256="10a92jsk1ccgxi5g6byrs4fbj5l2kih7vhib0jg6spdqi6rhqla1"; depends=[assertthat htmltools htmlwidgets jsonlite magrittr]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; }; HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; @@ -1594,9 +1596,8 @@ in with self; { HGNChelper = derive2 { name="HGNChelper"; version="0.5.2"; sha256="02hqd1jajbmilwyzgpy74xy8n1406zpkha9hpzzar5pmjda41nn9"; depends=[]; }; HGSL = derive2 { name="HGSL"; version="1.0.0"; sha256="1p453xr3d1bmqc6mrmzb0hz9p0gp25m6v6qr0l3bapcf71vzbvq1"; depends=[]; }; HH = derive2 { name="HH"; version="3.1-35"; sha256="0sykmmipbph9x7k371liiyj2vmqv0as2hr9x6yrn38ls6bscjlj4"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; - HHG = derive2 { name="HHG"; version="2.2"; sha256="114nfpdjdisryil9l8cws885qdskgrjm2cclx543hh4cdhpnkxnp"; depends=[Rcpp]; }; + HHG = derive2 { name="HHG"; version="2.3.1"; sha256="0gvprz3v9843pm64p3s87m41gyx7zri9p1qx0a4rk3468pab1vzi"; depends=[Rcpp]; }; HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; - HIBPwned = derive2 { name="HIBPwned"; version="0.1.7"; sha256="04l9309lmgn33gdwm162g6vywz8p9sdgmy2baxj98jv7x791wj3r"; depends=[crul jsonlite memoise ratelimitr urltools]; }; HIMA = derive2 { name="HIMA"; version="1.0.7"; sha256="0mvphwmm8gmin933bji2l2gbpjzm42vyc7sdka4xpjfsaal9pp9i"; depends=[doParallel foreach iterators ncvreg]; }; HIV_LifeTables = derive2 { name="HIV.LifeTables"; version="0.1"; sha256="0qa5n9w5d5l1kr4827a34581q380xmpyzmmhhl300z1jwr0j94df"; depends=[]; }; HIest = derive2 { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; }; @@ -1608,10 +1609,9 @@ in with self; { HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.1"; sha256="0gqaagzzspw3a40dqsqhxhjb8kii6xsc62p9b464rkhrwrm5i4z8"; depends=[httr RCurl XML]; }; HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; - HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.1"; sha256="16wiy9dlfbhn20mqq3qa5hbhaxkaqxw5wbdwcj4is5pd6zl0501p"; depends=[Rcpp RcppArmadillo Rdpack]; }; + HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.2"; sha256="0msin7rq3npz221mvrw3zcs6bwz439six99iblx5p3hkp1n1ljf3"; depends=[Rcpp RcppArmadillo Rdpack]; }; HMMcopula = derive2 { name="HMMcopula"; version="1.0.3"; sha256="192d0mg0smpdvxvlmha8h3pzfjmzf729ndijc0xngp9yq8syf882"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; HMMextra0s = derive2 { name="HMMextra0s"; version="1.0.0"; sha256="15y5q92x69sn80pc2x7xwbnsfrqpf7cjdja4hkq861jshkksbmg1"; depends=[ellipse mvtnorm]; }; - HMMoce = derive2 { name="HMMoce"; version="1.0.0"; sha256="0w2hrqjz75j9l6wimz9rsr8bwa5rvag0pavmyqkcb8jgqdgka8hx"; depends=[curl doParallel dplyr fields foreach imager locfit lubridate maptools raster RColorBrewer rgeos RNetCDF sp]; }; HMMpa = derive2 { name="HMMpa"; version="1.0.1"; sha256="0c3jmvcklywqsjmskx7zbw4d3l8i6bzr5h741v8iwgyw67mjn37g"; depends=[]; }; HMP = derive2 { name="HMP"; version="1.6"; sha256="0dz46f4wr3paar42hyidjvm5b4w0hz49gs7678b6kv3kb330ymll"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; @@ -1638,7 +1638,6 @@ in with self; { HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; }; HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; }; - Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; HapEstXXR = derive2 { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; }; Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; }; Haplin = derive2 { name="Haplin"; version="7.0.0"; sha256="1hdclx33ndjgz4xvg8myngzslcrmvc994nlgf3hp3km3591j62rj"; depends=[ff ffbase MASS mgcv snow SuppDists]; }; @@ -1647,26 +1646,26 @@ in with self; { HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; HellCor = derive2 { name="HellCor"; version="1.0.1"; sha256="02yaama6y2vv4pv93xrlsqz18f6vf7gbi6pn08pmrb2lbs6cdbcf"; depends=[energy]; }; - HelpersMG = derive2 { name="HelpersMG"; version="3.3"; sha256="10czlshajg20k0ipq1nqawm4wad5a3pvyf4ibg47jwhlqzfxmd7f"; depends=[coda]; }; + HelpersMG = derive2 { name="HelpersMG"; version="3.5"; sha256="1bf6g7bkvfr6mj5sqvc4dva681ij07j4pa6r89a71a69x6rbkak7"; depends=[coda lme4]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.0"; sha256="0ibb2nkjk1d59gc1ljihihsjai3jp4jsbbariv05h1z26pgpc9p3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HextractoR = derive2 { name="HextractoR"; version="1.3"; sha256="09x1zjpkm091yr7by83ksddka8ldczb0dg09yr1gb6j68rhlbigp"; depends=[doParallel foreach seqinr]; }; HiCblock = derive2 { name="HiCblock"; version="1.4"; sha256="07f94j9y5g6f09yi7iwag020ddfhpvrj5idfxwbr900hj3vgm1gm"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.4"; sha256="1imz7zfax74aakzk8457jww9r66qxpr2ncyvjj0y5paxdn76lnnq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; HiCglmi = derive2 { name="HiCglmi"; version="1.3"; sha256="17vwdhnf36cg56vidq7d85s4vgk2pnn5py1y2wsl2dm41vdl0847"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; - HiClimR = derive2 { name="HiClimR"; version="1.2.3"; sha256="1yv01pyfmgq306f3yravwf6sm79m0m93gpya95k85rxqdjl3c2hx"; depends=[]; }; + HiClimR = derive2 { name="HiClimR"; version="2.1.4"; sha256="1ynxy5c2md3bpii3693zcxabldaj0s54xby19j0f616hk4kjm3gm"; depends=[ncdf4]; }; HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; }; HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; }; HiResTEC = derive2 { name="HiResTEC"; version="0.54"; sha256="1qzdhwyrxiiwkz0j9c3pd0vdccgvhrh66sd0rc9qnh34cmqxjd6b"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop xcms]; }; HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-11"; sha256="1yh85pdb9r90qxcl5gxslyplxzrx8knrrsl2q65l57zfkqj185ja"; depends=[]; }; - HierDpart = derive2 { name="HierDpart"; version="0.1.2"; sha256="115irjz5pfx3yd8saap57zsy0ssjhadkqmv7wadsnzwlpsv2wb1z"; depends=[adegenet diveRsity dplyr entropart GGally ggplot2 hierfstat reshape2 tibble]; }; + HierDpart = derive2 { name="HierDpart"; version="0.2.0"; sha256="0vipp7bd2jpgzfm15ay8f4ddmjkjan7916gl3zbkscrwk36q3gp9"; depends=[ade4 adegenet diveRsity dplyr entropart GGally ggplot2 hierfstat reshape2 tibble vegan]; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; HighDimOut = derive2 { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; }; HistDAWass = derive2 { name="HistDAWass"; version="1.0.1"; sha256="1lc9pz3f6akzyisgwzfl4m5z400bailv1bmsb3snha8nhpqdk3nk"; depends=[class FactoMineR ggplot2 ggridges histogram Rcpp RcppArmadillo]; }; HistData = derive2 { name="HistData"; version="0.8-4"; sha256="0qw8jrh7g9w49k6f8hsg9wvy8ms2pcsmiv2ysxfcr89v60q084rb"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.42"; sha256="09h061511pk7iy1k9gb3ifa5q6gd17ix9sn2fshl6gp5sxnysn4f"; depends=[jpeg plyr png RColorBrewer rgl tkrgl]; }; - Hmisc = derive2 { name="Hmisc"; version="4.1-1"; sha256="160l50ppjs69ipcaya1mlcz29zbn5rmqg91r09dvzzvkvwfb47cr"; depends=[acepack base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; + Hmisc = derive2 { name="Hmisc"; version="4.2-0"; sha256="1n8i2jhc308hd6bvys9cd7nrz7pwjszs03r5bwlh1pc869ki95ly"; depends=[acepack base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; HoRM = derive2 { name="HoRM"; version="0.1.1"; sha256="0l0gcp1bagm7zbjg7hw2748aqjn9592531d0w5vjap0jgalaig32"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; @@ -1677,7 +1676,7 @@ in with self; { HyRiM = derive2 { name="HyRiM"; version="1.0.0"; sha256="1fh7y1abwz2cmdxviribfmdvkmd706p4mmf5myl84z7dbgqh6mgp"; depends=[compare orthopolynom]; }; HybridFS = derive2 { name="HybridFS"; version="0.1.2"; sha256="05skml3v2zm5hmd6slpmx3lfwi6x5wfgbx7cnhc6l077b11jpdd9"; depends=[caTools FSelector InformationValue ROCR woeBinning]; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; - HydeNet = derive2 { name="HydeNet"; version="0.10.8"; sha256="0rb456rfx3jgvjkbn50v38aq7chi6482wxk4mm26l9n537rhdpjz"; depends=[checkmate DiagrammeR dplyr magrittr nnet pixiedust plyr rjags stringr]; }; + HydeNet = derive2 { name="HydeNet"; version="0.10.9"; sha256="1glzbr91cwp99qk1cyf8824fg8jvghgf84gc64jjn2q70vczcf5f"; depends=[checkmate DiagrammeR dplyr magrittr nnet pixiedust plyr rjags stringr]; }; HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; IAPWS95 = derive2 { name="IAPWS95"; version="1.1.0"; sha256="03kggkcyvbgh7l9haa1ljg0sv6f2rs06r6j0w2x7cpm31qmc3yzl"; depends=[ggplot2 pander Rcpp]; }; @@ -1694,11 +1693,12 @@ in with self; { IBrokers = derive2 { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; }; IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; - ICAOD = derive2 { name="ICAOD"; version="0.9.7"; sha256="1x1x5z5kn55vbgx6hx44f99sp666v3wlzc26q1ap1rb8j48vz2wr"; depends=[cubature mnormt nloptr Rcpp RcppEigen sn]; }; + ICAOD = derive2 { name="ICAOD"; version="0.9.8"; sha256="07ysn36zvvyr8lqwy916spxasgszaj7h6gz0yl10yl46vnnbd05x"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; ICBayes = derive2 { name="ICBayes"; version="1.1"; sha256="1bmxba3bv9szzxvjf1blwxwdhw87h7s04cfn63c1gqpnpwsmr03y"; depends=[coda HI survival]; }; ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; }; ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; ICCbin = derive2 { name="ICCbin"; version="1.1.1"; sha256="1pzlaj7w98pgrlg3zvpmdv0dpgi5gih0j73qv86ak75fkxvrnzzw"; depends=[]; }; + ICDS = derive2 { name="ICDS"; version="0.1.1"; sha256="1jb98xi37jcf6nl5lx2ip9614l4w7lz7v53jpcbdj0ymqbfx1s70"; depends=[graphite igraph metap org_Hs_eg_db]; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; ICEbox = derive2 { name="ICEbox"; version="1.1.2"; sha256="170gg2fg9307yc2b25lsj8d1zla0frjxl47qh0njlqlrpi8jmm7i"; depends=[sfsmisc]; }; ICEinfer = derive2 { name="ICEinfer"; version="1.1"; sha256="0q07npgnssia7assvl1084080w3w434viyz5r1lj5slrx9gfdh8b"; depends=[lattice]; }; @@ -1729,11 +1729,12 @@ in with self; { ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; IM = derive2 { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; }; - IMIFA = derive2 { name="IMIFA"; version="2.0.0"; sha256="09jsk7m0427z4wdpwip4p6idinvdnvc4c3s637p9z9lcgz54vszy"; depends=[matrixStats mclust mvnfast Rfast slam viridis]; }; + IMIFA = derive2 { name="IMIFA"; version="2.1.0"; sha256="11qcazhvym4k2g983ml2h12x4iqsa6bfzgxdazrcv4af9hps0ahz"; depends=[matrixStats mclust mvnfast Rfast slam viridis]; }; IMIS = derive2 { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; }; IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; }; + IMaGES = derive2 { name="IMaGES"; version="0.1"; sha256="086i6nk9q11b278b0vn2yb52yh3pwlnhp5nyan230xczn1k47sgm"; depends=[BH ggm graph igraph lavaan Rcpp RcppArmadillo Rgraphviz sfsmisc]; }; IMak = derive2 { name="IMak"; version="1.2.1"; sha256="0yvmwqxp4y1bsbv37sdw3aa5w1j1hyqs5fs7nf2kkr6wj6ixq7ny"; depends=[]; }; IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; @@ -1744,21 +1745,22 @@ in with self; { IPEC = derive2 { name="IPEC"; version="0.1.2"; sha256="1fglr5hs61n13251145wqzvxy362fx32yzral96xd8li76ljxiic"; depends=[MASS numDeriv]; }; IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; }; IPMpack = derive2 { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; + IPPP = derive2 { name="IPPP"; version="1.0"; sha256="10bdfkw3w870414m56p31az1qamlqgnj2gazaxag243gr5vascvc"; depends=[]; }; IPSUR = derive2 { name="IPSUR"; version="3.0"; sha256="0nlxlmp2vjj17pxvx9nly85wnwgv19qs1a3fsw7p1c5jrk6daqqi"; depends=[actuar aplpack binom boot coin distrEx e1071 HH Hmisc lmtest mvtnorm prob qcc RcmdrPlugin_IPSUR reshape scatterplot3d TeachingDemos vcd]; }; IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.0"; sha256="0lyqcjnbissick5hzwrx21pykq4pww9j0i03j0gy43awl1cq5qq8"; depends=[isotone]; }; IPWsurvival = derive2 { name="IPWsurvival"; version="0.5"; sha256="0lmw0ifj8cds8lzyjkkv0i0zim23p0a3pawlhmhdm3nfvwawb853"; depends=[survival]; }; IPtoCountry = derive2 { name="IPtoCountry"; version="0.0.1"; sha256="1b10z93mc31cr1c5wxp9xz9cr3jm4n4g5kav09dyallpgw60rskp"; depends=[data_table devtools dtables ggplot2 install_load maps scales]; }; IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; - IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.1.3"; sha256="0n50sn3q0rx59arj5baknhh63qq2xmzjy6gz3asx8fjilqfv1jvd"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; }; + IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.2.0"; sha256="08r07z9z2mmx2w2xx2qpdvllwz85wmk3pwid77avc7vrvbbvgs6g"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; }; IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.9"; sha256="1732056jcq06wb65648vx4h80dfk0brd8igm6ssk5hgfjxzy221n"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IROmiss = derive2 { name="IROmiss"; version="1.0.1"; sha256="01l08s1g7h8cki372daa61pw3wac3pbv5d4yqnphg5p8ihsmrc5d"; depends=[equSA huge mvtnorm ncvreg]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRdisplay = derive2 { name="IRdisplay"; version="0.7.0"; sha256="12chk53nf4zckgc4yl7gbvd7m5dvli52inp5b3f0zvcjvfncksli"; depends=[repr]; }; - IRkernel = derive2 { name="IRkernel"; version="0.8.14"; sha256="0p0fkclvcgcgswn030nclsl28g2waakgixqzfvy6326ji5li6mvr"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; + IRkernel = derive2 { name="IRkernel"; version="0.8.15"; sha256="1n0nc3paij8fgbp7l2b4405zk9k4y3gdi2bz6z8x6j0h5mi6k6a6"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; - ISDA_R = derive2 { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; }; + ISEtools = derive2 { name="ISEtools"; version="3.1.1"; sha256="1dipff8msky1rxbrckyxh7c5mh40q4a5hjdghsqkxklwh9zmrs44"; depends=[coda Xmisc]; }; ISLR = derive2 { name="ISLR"; version="1.2"; sha256="1bfay6cs40crhh34v2ksn4zdxivimfyjvk19wqbnjr7vs837l3xh"; depends=[]; }; ISM = derive2 { name="ISM"; version="0.1.0"; sha256="0by0w6zgnwcwzbmxx16s8mb1avhc6aiavqp0qkxx6hr70vrgb997"; depends=[rJava xlsx xlsxjars]; }; ISOcodes = derive2 { name="ISOcodes"; version="2018.06.29"; sha256="0dzqfhrqb43bwkpblmzfx5viwgrd84sin461msczwdqx7b9da92a"; depends=[]; }; @@ -1777,18 +1779,18 @@ in with self; { IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; - Immigrate = derive2 { name="Immigrate"; version="0.0.1"; sha256="087hzamxb61dfsi73iv3i5i95i63ichl360h3sk18s8j217h0y3g"; depends=[pROC Rcpp]; }; + Immigrate = derive2 { name="Immigrate"; version="0.0.2"; sha256="1khxjh4lpsgv5qqk30ry6r8y3vjblwxsx9frv63pws4x1j6j2apm"; depends=[pROC Rcpp]; }; ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; }; ImputeRobust = derive2 { name="ImputeRobust"; version="1.3-1"; sha256="1zvwlpffpm4gqysz57clf8jkqr72yjbzx90pdy95la51m0b6cdbd"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; - InPosition = derive2 { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; }; + InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.5"; sha256="1irbfdrab9mz50py8h3gnjj14swh7b1pbrqf2fj04ym206rsca02"; depends=[coda ggplot2 InterVA5 rJava]; }; - IncDTW = derive2 { name="IncDTW"; version="1.0.4"; sha256="14l13kzmf3cbhh115afxcx6diwbdfx45bvfqdv68rlzhx3dbdiwm"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; + IncDTW = derive2 { name="IncDTW"; version="1.0.5"; sha256="130vld3j6s50r4n98zgjr69isrma8j8nz86a2asl1m4gvh9sxh28"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; }; IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; }; IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; }; IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; - IndexNumR = derive2 { name="IndexNumR"; version="0.1.0"; sha256="1385j7a1hz8i5g00x1p1rd32gq243w2zrzvk781zjqdq7az33fsw"; depends=[]; }; + IndexNumR = derive2 { name="IndexNumR"; version="0.1.1"; sha256="0979v4wc3w9jxvwzpdrn8snrnicw9i41r9r9rpmkqbfrzc0xv6l3"; depends=[]; }; IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive2 { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; @@ -1828,7 +1830,7 @@ in with self; { Iso = derive2 { name="Iso"; version="0.0-17"; sha256="0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0"; depends=[]; }; IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; - IsoSpecR = derive2 { name="IsoSpecR"; version="1.9.1"; sha256="1r9r497d01ylivw5wfl8s0jbhib98a035z97k9nz0ws167isw5p1"; depends=[Rcpp]; }; + IsoSpecR = derive2 { name="IsoSpecR"; version="1.9.2"; sha256="0hcwqmwv827jcxmahgjx6bf90z432kzqwfrb1hqnk6d8iayl84pa"; depends=[Rcpp]; }; IsoplotR = derive2 { name="IsoplotR"; version="2.3"; sha256="0qxj6bx4kslzrkh1pqfqay65kaaqcs084sa0kzc7dhvhi01gvh4x"; depends=[MASS]; }; IsoriX = derive2 { name="IsoriX"; version="0.8.1"; sha256="0rr9frj0mhismls60vgax357jgfyq2wci7rvhvp70fh5k998mzid"; depends=[lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; @@ -1836,7 +1838,7 @@ in with self; { JAGUAR = derive2 { name="JAGUAR"; version="3.0.1"; sha256="0lyc8biwj9yir1i06klp2jkb31mnzwp226aw7pwabkprfhqgfmqd"; depends=[lme4 plyr Rcpp RcppArmadillo RcppProgress reshape2]; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; JBTools = derive2 { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[colorspace foreach gplots plotrix]; }; - JFE = derive2 { name="JFE"; version="1.3"; sha256="0i4xzqyfpk9bl0nhbhm1yldslqcly4xm8l8l4lrk5h9srap3f58x"; depends=[BurStFin fAssets fBasics fPortfolio iClick MASS PerformanceAnalytics quantmod tcltk2 timeDate timeSeries xts]; }; + JFE = derive2 { name="JFE"; version="2.0"; sha256="17mzr858r432z7sc16x7p4aa2g9m07m6h8b259ag85gph9sz5glq"; depends=[BurStFin fAssets fBasics fPortfolio iClick MASS PerformanceAnalytics quantmod rugarch tcltk2 timeDate timeSeries xts]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3.1"; sha256="02p9z32f8j60wnh1szkjr2zfa9zwyw0gqinpsvll4dymf8cjawpw"; depends=[igraph]; }; JGR = derive2 { name="JGR"; version="1.8-6"; sha256="0n3z4dm4q93did5b7hw802akhr6gyidshvlj2db4sghmf07czk2c"; depends=[JavaGD rJava]; }; @@ -1860,13 +1862,14 @@ in with self; { JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; JointNets = derive2 { name="JointNets"; version="1.0.0"; sha256="1kvpx1xmpw1pns8x9wk4s27vf8wq6bq3r5bv1w9kbdd7130bpspz"; depends=[brainR igraph lpSolve MASS misc3d oro_nifti pcaPP rgl shiny]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; - JuliaCall = derive2 { name="JuliaCall"; version="0.16.1"; sha256="11ganlkc65i4vljdjzhr419p1rw3dr4pw2jk6gvb8jk8pasfs36h"; depends=[Rcpp]; }; - JumpTest = derive2 { name="JumpTest"; version="0.0.1"; sha256="1d5zmjwmajzdg5d1ws40zchx9wiaav01fby1v3irym2mx30jgbqn"; depends=[MASS Rcpp RcppEigen]; }; + JuliaCall = derive2 { name="JuliaCall"; version="0.16.2"; sha256="1655ncz8iaycl1w7q71nb18076fic6wm6hy1imznw15ck5d2w0k0"; depends=[Rcpp]; }; + JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; }; JuniperKernel = derive2 { name="JuniperKernel"; version="1.4.1.0"; sha256="1zghlfwh4wsjjp7ldp5y86ffyzc27ccl5j9lcwlp1di9slaqjign"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; + KDViz = derive2 { name="KDViz"; version="1.3.1"; sha256="1if4lkq9kvncqw56j7m9kh4piph091zkivvnhxzxj72zq661q5br"; depends=[htmlwidgets igraph mpa networkD3 rvest stringr tm xml2]; }; KENDL = derive2 { name="KENDL"; version="1.1"; sha256="05vsh3x0li964a485q3n19c7fahcprvg1bnrvffagkxf8w1iz153"; depends=[]; }; KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; - KFAS = derive2 { name="KFAS"; version="1.3.3"; sha256="026nrlwsmal9n76za4sjlfb5ybw88ricnazg018nc195c345ql04"; depends=[]; }; + KFAS = derive2 { name="KFAS"; version="1.3.4"; sha256="17bgzxlm3j3fp14gwn8b8r737a7vv3kyknzyq23viawd04ll0365"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KGode = derive2 { name="KGode"; version="1.0.1"; sha256="05g8zr3jm13cl6wk9m693gxa3fn5cjppm56j7ih4zzswzk9b67h9"; depends=[mvtnorm pracma pspline R6]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; @@ -1880,6 +1883,7 @@ in with self; { KRMM = derive2 { name="KRMM"; version="1.0"; sha256="0wxzhrrc4lx20nxjny7rcfw3bya7drn88zbrlzx9f531298xwbrk"; depends=[cvTools kernlab MASS robustbase]; }; KSD = derive2 { name="KSD"; version="1.0.0"; sha256="0wqmbr51yv7f87pnhph2nrj9y2d5jql2agizcaq6lax23lj6xfb7"; depends=[pryr]; }; KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; + KSPM = derive2 { name="KSPM"; version="0.1.1"; sha256="1x970ddzz3939zyby1fwxg91rjms686jc882qbnm0sbw4028na93"; depends=[CompQuadForm DEoptim expm usethis]; }; KScorrect = derive2 { name="KScorrect"; version="1.2.4"; sha256="16qdmvgx3y170i495vmph2bhnc3j1z5232jibr3yzxl9i887kk0f"; depends=[MASS mclust]; }; KSgeneral = derive2 { name="KSgeneral"; version="0.1.1"; sha256="1ldk3fvwbr6hw7x3ydgzixgc41a0fbbic699zjlnpj5x4mjg1qby"; depends=[dgof MASS Rcpp]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="0.1"; sha256="1hsndxslqgca0ay4q277zjwnwz8bzwfkzz915dgqvjd2v4afrvzx"; depends=[]; }; @@ -1894,7 +1898,7 @@ in with self; { Kernelheaping = derive2 { name="Kernelheaping"; version="2.2.0"; sha256="06vb8zpdf5brjsfiyd1s3gmhlfprpkw7fmjr594p4lw354lvhb4m"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; Knoema = derive2 { name="Knoema"; version="0.1.16"; sha256="0v6w8rrw8nd4l1by5w9xd4hbxp55cma89kljha47ykvmnflsrjsc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; - KnowBR = derive2 { name="KnowBR"; version="1.9"; sha256="12yj7grvaayxrj8fvy8z0hanzmrf2fl645cyy85df5jcq4hjr871"; depends=[fossil mgcv plotrix sp vegan]; }; + KnowBR = derive2 { name="KnowBR"; version="2.0"; sha256="0i934gff8ldg0lm5cfcf3ip7abnparaaviq8avs7cbnacs6nw8i1"; depends=[fossil mgcv plotrix sp vegan]; }; KoNLP = derive2 { name="KoNLP"; version="0.80.1"; sha256="1chj8kv1l405dm0jcsxjjjxx395z05sfxbcc5vxnpbydx7lxa6zy"; depends=[devtools hash rJava RSQLite Sejong stringr tau]; }; KoulMde = derive2 { name="KoulMde"; version="3.1.0"; sha256="158lg1jr3lgn85wgdxww6nldy9blxnnjry6hwkp6kcjpg9jljjl8"; depends=[expm Rcpp RcppArmadillo]; }; Kpart = derive2 { name="Kpart"; version="1.2.2"; sha256="02df0pr8a0gm8558gbw9svxf5sybmg27grymy71ar9hjnhw5xlf2"; depends=[leaps]; }; @@ -1902,7 +1906,7 @@ in with self; { KrigInv = derive2 { name="KrigInv"; version="1.4.1"; sha256="0x12xff7lgr1v2243shfz9a8r02qs56p7i0b8j2s6bmrzj1abrwb"; depends=[anMC DiceKriging mvtnorm pbivnorm randtoolbox rgenoud]; }; L0Learn = derive2 { name="L0Learn"; version="1.0.8"; sha256="1d29qy7b4msb6iii9gw4i3xblyb150pvnp99jm7pl2ayh0c1vnlr"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; }; L1pack = derive2 { name="L1pack"; version="0.38.19"; sha256="09n1045lsx1ap47mhzcqghmwwhj24kvpjjr3ysprj058jp5g7ri0"; depends=[]; }; - LAGOSNE = derive2 { name="LAGOSNE"; version="1.1.0"; sha256="08sf4mm40gv9mr57pxsl1b62s2dqvbvrhy2irzqspyqk5ai2aw0m"; depends=[curl dplyr lazyeval magrittr purrr rappdirs sf stringr]; }; + LAGOSNE = derive2 { name="LAGOSNE"; version="1.2.0"; sha256="01d6460nph55id8392sraksnrwpnkpgfwzwvafpjzm5hjcb6b7rz"; depends=[curl dplyr lazyeval magrittr memoise progress purrr rappdirs rlang sf stringr tibble tidyr]; }; LAM = derive2 { name="LAM"; version="0.3-48"; sha256="12a38rvb0krfl0yffhyn7nmxcgkga46kfn4h7wzvnr0hpl5a7kjf"; depends=[CDM coda MASS numDeriv Rcpp RcppArmadillo sirt TAM]; }; LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; @@ -1935,7 +1939,7 @@ in with self; { LINselect = derive2 { name="LINselect"; version="1.1"; sha256="1dx97pnfwlv6w00qp8b2ah8jl1arfh39x1vzry8zrxgxisq407wq"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; LLM = derive2 { name="LLM"; version="1.0.0"; sha256="0x4488mg8q4nhyjhqlzkwmh51frkkjn0gir22rk8rfzg4r6d18d6"; depends=[partykit RWeka stringr]; }; - LLSR = derive2 { name="LLSR"; version="0.0.2.5"; sha256="0m8pikszldclhjbdpd6jvf5yaxr7hbv54fpj768rlvz2df4ylgys"; depends=[digest dplyr ggplot2 minpack_lm rootSolve svDialogs svglite XLConnect]; }; + LLSR = derive2 { name="LLSR"; version="0.0.2.6"; sha256="1rw7qv0xphqy03z0cgk5sv7yb8rplj24r6wq4yyvmbq2z9n9vrmr"; depends=[digest dplyr ggplot2 minpack_lm rootSolve svDialogs svglite XLConnect]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; LMest = derive2 { name="LMest"; version="2.4.3"; sha256="0ynkm4f1ri80h5fraywyvwhrm6f6sa7hp95rzl29zc91904yycx1"; depends=[MASS mmm MultiLCIRT mvtnorm]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.2"; sha256="10agjrljnqw689nn9af9ihhb9sq2gmsx7l3zfmrizkavjjk67mcd"; depends=[MASS]; }; @@ -1947,7 +1951,6 @@ in with self; { LPGraph = derive2 { name="LPGraph"; version="2.0"; sha256="1d3czxihaz3f09bfb34knqb6prhcx50kh8y4qrhhakic999z6ifw"; depends=[car PMA SDMTools]; }; LPKsample = derive2 { name="LPKsample"; version="2.0"; sha256="1jg99025vk42rnjdymh3nj71npn4pmdsmk6rvnx3lykpi72f85dz"; depends=[apcluster igraph mclust]; }; LPM = derive2 { name="LPM"; version="2.7"; sha256="1anjgflj1272xrghn3s9a21f2dfggppnzjqh3p8zaid91bzg0g34"; depends=[fracdiff MASS QRM]; }; - LPR = derive2 { name="LPR"; version="1.0"; sha256="16kmfm6p7cwnzpd054ik0cy0ipif6zssdfyxyfm0cijz8z4z40x7"; depends=[doParallel foreach glmnet iterators lattice Matrix slam]; }; LPS = derive2 { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; }; LPStimeSeries = derive2 { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; }; LPTime = derive2 { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; }; @@ -1972,7 +1975,7 @@ in with self; { LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.0"; sha256="07mvbk3hwl240r46ahha0a4fzq96awk963zl8dhky51b6abp83gz"; depends=[icenReg inum partykit rpart survival]; }; LUCIDus = derive2 { name="LUCIDus"; version="0.9.0"; sha256="08z7ikvql40zwnh2sxn9fkzyjyn7gvq2pljff6iyqwvah01fd5ih"; depends=[doParallel foreach glasso glmnet lbfgs Matrix mvtnorm networkD3 nnet]; }; - LVGP = derive2 { name="LVGP"; version="2.1.4"; sha256="05krn48q0zz578862jjb4x5wma86blzlpf8cbqdimgkzbysryyy2"; depends=[lhs randtoolbox]; }; + LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; }; LaF = derive2 { name="LaF"; version="0.8.0"; sha256="1nasj0502i0dbzqgm1pdvmc0wj1hk2q5fzanpcsh7zslsikiqxyq"; depends=[Rcpp]; }; @@ -1999,7 +2002,7 @@ in with self; { LearnGeom = derive2 { name="LearnGeom"; version="1.4"; sha256="0qalhy4g47ik8cq2m1zajhv79rla8g72dmcwhnizwn6afhm6fnpm"; depends=[]; }; LearningRlab = derive2 { name="LearningRlab"; version="1.3"; sha256="14q8pm51yrfpny2wg5l0x02zibh7qn11zkg51igadq3r6256rfd1"; depends=[crayon magick]; }; LendingClub = derive2 { name="LendingClub"; version="2.0.0"; sha256="13qh5p4ksvgd1pmc4mdp8p44ra34fvp3s5p5vhlkpclkv5d4mxq2"; depends=[dplyr httr jsonlite plyr readr]; }; - LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.2.0"; sha256="0va8fq80133cjw37ndfwgndpim8hhk4m1i29gr1lc7phivr8dfvm"; depends=[data_table pbapply quanteda reshape2 scales stringdist stringi tibble]; }; + LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.2.2"; sha256="10424n1sfaj21x8mlsc35m2p2zgdn7pg75qsx495l4qqjci6g2pl"; depends=[data_table pbapply quanteda reshape2 scales stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.3"; sha256="1qdgs6p11j0ign27bbnn32g65sw42982ijrig5cwqsdvxpdabjl8"; depends=[ggplot2]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-8"; sha256="17ykazac7iv02bxl8xg948vhbdr32icdm1v4bk31zmslp4xsk08g"; depends=[]; }; LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; @@ -2023,7 +2026,7 @@ in with self; { LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.1"; sha256="1fshqm6ag0scjawf2vn8zz9vrx4fv0shk2qyk60adb1ms85y8rrq"; depends=[cluster gss lattice Rcpp]; }; - LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.1"; sha256="0hghj1vpfwxk1w7pc61y5l3jbsp8419nyfa9xviw99m6nyrkpma3"; depends=[cluster lattice]; }; + LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.2"; sha256="0cs2dz1p6kpc9ghihnkzjknxwd904c376ryyabkf6lkqzc2p91sq"; depends=[cluster lattice]; }; Lock5Data = derive2 { name="Lock5Data"; version="2.8"; sha256="17awskq78h23z2dy96d7hziljhnkx5phpd48q7cppxidyvzfywim"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-1"; sha256="1hy7fnahncpsgqxfy352lxk298i69w7drlspsgdvpzdbghca3y3i"; depends=[MASS mclust mvtnorm rgl tkrplot]; }; @@ -2036,7 +2039,6 @@ in with self; { LowRankQP = derive2 { name="LowRankQP"; version="1.0.3"; sha256="1a46rk0fhpnrlfzmydy7zjswrm6hf056qxgf5p10naq6025whf8x"; depends=[]; }; LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; - LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; }; Luminescence = derive2 { name="Luminescence"; version="0.8.6"; sha256="08pgy0pdvafssxmzhnazqvxi4f03qsjidvzv6vrk6r4rfkld5244"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="1.0"; sha256="0hf5ckpridi70yv15h0771q1grhqr9c592r87hgba7yh55dqqcq1"; depends=[dplyr MASS]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; @@ -2044,15 +2046,14 @@ in with self; { MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.0.0"; sha256="0kp5z0jg266w4mhy1hx52h14dnyhy1fjllw7z473gj4fskikp5gg"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.18"; sha256="18nl214xjsxkcpbg79jkmw0yznwm5szyh2qb84n7ip46mm779ha6"; depends=[]; }; - MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11.5"; sha256="0qyqvmdhk1a7qz6c5jsbf274xahi9zjn2faw0jyk4wbnmfj2shii"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; + MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.12"; sha256="1r37x1hnhq246dazc76d17jfjc57khxayswbzvc4md39z8dnbihx"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.1-2"; sha256="1jl26ndi0zvyq29qjkmdxg9psgwyv8wapd7f0cv4w88d9gk257az"; depends=[lattice MALDIquant robustbase signal wmtsa]; }; - MAMS = derive2 { name="MAMS"; version="1.2"; sha256="19w6ydsbr60p1cmizhhmsajzasg76r23x29qcaa7mibcb5gh1yzs"; depends=[mvtnorm]; }; + MAMS = derive2 { name="MAMS"; version="1.3"; sha256="181i1p84pacl31qsh5vkvyxnca9sx6rabi7cs42w9qpzk2fxcmzj"; depends=[mvtnorm]; }; MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.3.1"; sha256="0lxqv85hc299r28m5z4id3xdgd2dism1b1zs09qly3i6byndn4gw"; depends=[ellipse magic MASS Matrix multcomp plotrix plyr]; }; MAPA = derive2 { name="MAPA"; version="2.0.4"; sha256="02s223s58k2jk49m0xlz3q9m3nip3h4dl4v58j18z2vgi54dwnjr"; depends=[forecast RColorBrewer smooth]; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; - MAR1 = derive2 { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; }; MARSS = derive2 { name="MARSS"; version="3.10.10"; sha256="03kkg6slq3z12saw0vf6z9wqadzpy4yjh9bm47zl4av4pj03y6lr"; depends=[KFAS mvtnorm nlme]; }; MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; }; MASS = derive2 { name="MASS"; version="7.3-51.1"; sha256="14907ia8418mp3p1rs1i2f1x5b6kk5z998dk353a29j3xqf3ybyq"; depends=[]; }; @@ -2077,28 +2078,26 @@ in with self; { MBTAr = derive2 { name="MBTAr"; version="2.0.0"; sha256="12545rzdxnk34192d445ahz80q3k8fn51xgzha7z27jh4ja78abx"; depends=[jsonlite]; }; MBmca = derive2 { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; - MCAvariants = derive2 { name="MCAvariants"; version="2.0"; sha256="0akff64v49d5r0wvspal0pz17jhz1ry4vdmj47m28gzjj69zcab0"; depends=[]; }; + MCAvariants = derive2 { name="MCAvariants"; version="2.2"; sha256="012374zm77i8bl4nm3dg97m7x22697ryq1766mhsgh6gl3jgcm66"; depends=[ggplot2 ggrepel gridExtra]; }; MCDA = derive2 { name="MCDA"; version="0.0.19"; sha256="0r8l6q5aisjfk0xpv4pyccnngjlkm3978lba62rspd9kyhjlz64n"; depends=[combinat glpkAPI RColorBrewer Rglpk]; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; }; MCI = derive2 { name="MCI"; version="1.3.3"; sha256="1wn8lcr5sq3697nsmly6syb9jv7p99ks0fy933ff5rx54x3rf9hz"; depends=[]; }; - MCI2 = derive2 { name="MCI2"; version="1.1.0"; sha256="05jdxkvc2m8fcwzzn60dc5rix7l6f793w9ninsik8jlvmraf0z37"; depends=[MCI osrm REAT reshape tmaptools]; }; + MCI2 = derive2 { name="MCI2"; version="1.1.1"; sha256="1d8grg2a3c0nyl9wqxfsi0nq5qb5qbaspr5p2v791mhnbnfzkyhf"; depends=[MCI osrm REAT reshape tmaptools]; }; MCL = derive2 { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; MCMC_OTU = derive2 { name="MCMC.OTU"; version="1.0.10"; sha256="15k3y4bm4cxjb6r30afpw9gksflsxigzb17zwm1ipygq0d0h0zkg"; depends=[coda ggplot2 MCMCglmm]; }; MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.3"; sha256="0b9n793spljmsb58jp41vnl9c753xqaw1g4wbi4ax348cvi09jk8"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; - MCMCglmm = derive2 { name="MCMCglmm"; version="2.26"; sha256="0dx3464mihnm8pf2vwr409ca5m7mvm2054x9jigazg66zsd3fxyj"; depends=[ape coda corpcor cubature Matrix tensorA]; }; + MCMCglmm = derive2 { name="MCMCglmm"; version="2.27"; sha256="1n4ar1jrqww6zfqpd4m9xghh08ydmnp5yb4wqwkkrv02y1hvd0lp"; depends=[ape coda corpcor cubature Matrix tensorA]; }; MCMCpack = derive2 { name="MCMCpack"; version="1.4-4"; sha256="1xzrgib2mjz0xpqranhdyc5m4fmg2fir9mcf51ciw5pp53b97qcp"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.9"; sha256="1zmlz2kwrp1qiyvq3v5vv1rsy3s2idlifmckmgznk4nkqds5ifwh"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; - MCMCvis = derive2 { name="MCMCvis"; version="0.12.0"; sha256="12wypcbf5sh2r1pk2qd9wxw36xiz6wrzi1nsxgwaj5vm0ld6qc24"; depends=[coda overlapping rstan]; }; + MCMCvis = derive2 { name="MCMCvis"; version="0.12.1"; sha256="1sjr196psdjzywfgpzifz6rb0bq9im1kvnw5145b1zmb3iblxsx3"; depends=[coda overlapping rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-10"; sha256="0ns74qhm9bzi70m9bn61zs4mmqmmxxi77f49pdrcnr8wrrnn1kdn"; depends=[lattice mvtnorm]; }; - MCPerm = derive2 { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDFS = derive2 { name="MDFS"; version="1.0.3"; sha256="09lmwvysyy34l51mda01cjr4579i3v16vsj2kf3066dyhjik1zl4"; depends=[]; }; - MDM = derive2 { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; }; MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.3"; sha256="0aaw787fvcyhw6mbl42icgqfdzvfr618vg179984xqifafr40dyc"; depends=[linprog Matrix]; }; MDSMap = derive2 { name="MDSMap"; version="1.1"; sha256="0knrkfwgl763fwdb3ln3g5y3rarnpqdfgzxf4m045664m7gkipsg"; depends=[princurve reshape rgl smacof]; }; @@ -2109,9 +2108,8 @@ in with self; { MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; - MESS = derive2 { name="MESS"; version="0.5.4"; sha256="11092snwwj94fcfxsdqmqvlp2z9f1d5aqzrgczzla283543qg7zl"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + MESS = derive2 { name="MESS"; version="0.5.5"; sha256="13kln67ca9d5dnimg0mqbnl6bni52r04xjhrw1vyzlhvn0x684kg"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.1"; sha256="1pznisvvgshqbixyj8jya35yhmmpxxa1ivh48c9iafgapwc4yn4s"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; }; - MExPosition = derive2 { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; MFAg = derive2 { name="MFAg"; version="1.4"; sha256="092zbl2pxbsvfyf3qssbid14194p0ax2zrw0gzpyqwzdpx0brrlb"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.0"; sha256="1gy1v49525i2bhr14nvpz8rqcz3lchfnvm0g53qlln55jdndgsx4"; depends=[]; }; @@ -2123,8 +2121,8 @@ in with self; { MGLM = derive2 { name="MGLM"; version="0.2.0"; sha256="0yyqm53lvp59zy8lkffw9x3zhqrnh29j5v3yyzk6qrgj2slnc7nk"; depends=[]; }; MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; MGSDA = derive2 { name="MGSDA"; version="1.4"; sha256="0grwl740yvz2av5nkvmyyrr8ji5f39sjs1c5gxp6lp9p36i2wc32"; depends=[MASS]; }; - MHCtools = derive2 { name="MHCtools"; version="1.1.0"; sha256="03y6m3a46bzazxkrxdrii2p1fyc26il09z5676c63rk8wz9wcxa0"; depends=[rlist]; }; - MHTcop = derive2 { name="MHTcop"; version="0.1.0"; sha256="1fhi7inv8zf3ygj4pf8am445ldq9qpwzi3ll4xqwz8d4s6ajx405"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; }; + MHCtools = derive2 { name="MHCtools"; version="1.1.1"; sha256="0f3r7600nbj19rzlfxb8hk2ifrqjmf796ilz5xgs4fkdqxclb585"; depends=[rlist]; }; + MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; }; MHTdiscrete = derive2 { name="MHTdiscrete"; version="1.0.1"; sha256="0czpsk4jiwbzd6g2dwssmggsdhwchikmc1skv48d9j4xvglns7yw"; depends=[]; }; MHTmult = derive2 { name="MHTmult"; version="0.1.0"; sha256="1y3vh2kab6nfkiz4nzdhrpy9h6drk1ibfd2h62hpr3y09z9a2yld"; depends=[]; }; MHTrajectoryR = derive2 { name="MHTrajectoryR"; version="1.0.1"; sha256="13idcjx7pjpwvr4c52938yqhhaj1gprb8hjhaim3jx4062wf9pla"; depends=[mgcv]; }; @@ -2132,7 +2130,7 @@ in with self; { MIAmaxent = derive2 { name="MIAmaxent"; version="1.0.0"; sha256="0sjhzai54g7849a39vx902xik3k4my8sx2b47am2147nv8xz8ydi"; depends=[dplyr e1071 raster]; }; MIDN = derive2 { name="MIDN"; version="1.0"; sha256="08i9zfmaywi5imp36ahjpirlkl55k01x543nz95i089w3sfrsz0g"; depends=[BiasedUrn]; }; MIICD = derive2 { name="MIICD"; version="2.4"; sha256="1xlvhyh3gg77cym10i8hrxm8r1jm4plvny2c4izic6w89snplyq6"; depends=[MASS mstate survival]; }; - MIIVsem = derive2 { name="MIIVsem"; version="0.5.2"; sha256="0i144v2qjqb26vjym1lh3hbikm882hrwx6kz2ajrica59gyryr37"; depends=[boot car lavaan Matrix numDeriv]; }; + MIIVsem = derive2 { name="MIIVsem"; version="0.5.3"; sha256="11rc3rxxg53kbha8jn6p1kgp7k7a1xdsdvscpzshn61wdfv9gzwm"; depends=[boot car lavaan Matrix numDeriv]; }; MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MIRL = derive2 { name="MIRL"; version="1.0"; sha256="1l52zpd00rm77vlk4lgnlviz18f7079a4n1gvlmr5syib7cvhfxs"; depends=[boot glmnet MASS mice]; }; @@ -2152,14 +2150,15 @@ in with self; { MLZ = derive2 { name="MLZ"; version="0.1.1"; sha256="1x2mmd7rb6rk2qb84i7k71w8l14m5dvkwg1xpjqgy9lzqnwhxi45"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; MM = derive2 { name="MM"; version="1.6-5"; sha256="0vi6wp6p48jjfmnspdsnmw0yqz39sjk6nrkxdw7kan5h17h4rwd7"; depends=[abind emulator magic Oarray partitions]; }; - MM4LMM = derive2 { name="MM4LMM"; version="1.1.4"; sha256="0hx73vc1jcmzrvchni7v4br2ckwbnwy7ra3aakrgv2ca2lx0j8q7"; depends=[Matrix Rcpp RcppEigen]; }; + MM4LMM = derive2 { name="MM4LMM"; version="1.1.5"; sha256="1mwb10vq5mnfdq47qxr58xq8iq4n343m4xb9jpzf3a65nnxsgl95"; depends=[Matrix Rcpp RcppEigen]; }; MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; }; MMDai = derive2 { name="MMDai"; version="1.4.0"; sha256="0bb7hg8fkmzg87xr1b2hxhy75xi461ks6w12z85k4c77kswfpx3b"; depends=[DirichletReg]; }; MMDvariance = derive2 { name="MMDvariance"; version="0.0.9"; sha256="1yiqabifym7gdknqrhfnql6qc8p163npzrrckbyqjry3yvkqr5wi"; depends=[Biobase lawstat MASS]; }; + MMLR = derive2 { name="MMLR"; version="0.1.0"; sha256="0gir1adflxkmz3qfpy2xkx434phzszsylzw38vdgicmdic1m2ywq"; depends=[matlib]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; - MMPPsampler = derive2 { name="MMPPsampler"; version="1.0"; sha256="1lk5hh4ihclldrbx2pbfzxvspjaywh7mg6nhs2mjr5dcdj2h0hky"; depends=[cowplot ggplot2 gtools MASS Rcpp RcppArmadillo]; }; MMS = derive2 { name="MMS"; version="3.0.11"; sha256="0gc4iz371bi65sp49gvjh99f8jvii8l0k12kn1vbpzk4a3cw7iad"; depends=[glmnet Matrix mht]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.1"; sha256="16dwmpj13rzxmd2x7xaakw2zq2aly7ajjbfnc39qvdzk6n2x37wn"; depends=[]; }; + MMeM = derive2 { name="MMeM"; version="0.1.0"; sha256="1b0wdcyqnliw85il5vnwy9l4x1z42kirbg872hl47plwfrp9gahc"; depends=[jointDiag lme4 MASS Matrix matrixcalc psych stringr]; }; MNM = derive2 { name="MNM"; version="1.0-3"; sha256="16b2yrm2kn943vzrr38qhk6qq20a842xv7iiln4is02csijxw2b3"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive2 { name="MNP"; version="3.1-0"; sha256="06qs2vsmjs6rcpqlwfc1n5y5hzxf7pngbdmiza1wijm9hh54ikh0"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; @@ -2189,7 +2188,7 @@ in with self; { MPsychoR = derive2 { name="MPsychoR"; version="0.10-7"; sha256="10nphm5dzxha4xb7a21b0nxbqy55fg8k748qax7nq3rj4nfjaml7"; depends=[]; }; MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; - MRFA = derive2 { name="MRFA"; version="0.2"; sha256="1ld9bchldx4y8g0zp2nr6r439f9vqy5xcr9bkv4g4vphm2c5zq72"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; + MRFA = derive2 { name="MRFA"; version="0.4"; sha256="1ivzyp3q2nb6h5mhykina75ak7ajfw62rh23yr4pljma7gmr1hhm"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; MRFcov = derive2 { name="MRFcov"; version="1.0.36"; sha256="19hqshxvkh2lsiv28wklb4b3khjsnpxdnq6w2ayvcqfqrbdwmpp9"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; }; MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; }; @@ -2197,7 +2196,6 @@ in with self; { MRPC = derive2 { name="MRPC"; version="2.0.0"; sha256="1gy755y2xq9fdnbgwxi32l4abyirm8q9pqwbk8rrc2c26nhdi5fb"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg Rgraphviz sna WGCNA]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; }; - MRSP = derive2 { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[Formula matrixcalc]; }; MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.1.0"; sha256="1f6ivr6cx4irqkry219x4nk6k5zhp3b19axy2xbfc3dx5zixhpjl"; depends=[]; }; MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MRwarping = derive2 { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; @@ -2212,7 +2210,7 @@ in with self; { MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; MST = derive2 { name="MST"; version="2.1"; sha256="16mnsn2an02k4jrqb6yj0n1i563zny5v10ngfq1y28fqaw6h8yyq"; depends=[Formula MASS partykit survival]; }; MSbox = derive2 { name="MSbox"; version="1.1.1"; sha256="1bw1c6yf3lnvd0rb3nwcrq3yckwnnrvck96mdq64njjldap8i152"; depends=[magick stringr xml2]; }; - MScombine = derive2 { name="MScombine"; version="1.2"; sha256="1cidhksv0a1lgz173ry8y3m5z1zqsqn74fy1fjmdw2k8rxqs8pi8"; depends=[plyr]; }; + MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; MSwM = derive2 { name="MSwM"; version="1.4"; sha256="1zhfar02s7hm4gjs1flkh9a4526d98hik8bqrksy75758baiqg7l"; depends=[nlme]; }; @@ -2229,7 +2227,7 @@ in with self; { MVA = derive2 { name="MVA"; version="1.0-6"; sha256="09j9frr6jshs6mapqk28bd5jkxnr1ghmmbv6f4zz0lrg81zjizl3"; depends=[HSAUR2]; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; - MVN = derive2 { name="MVN"; version="5.5"; sha256="05jl9g7jyx6a5fc8bw5si393s7f9swygma8h461v8abqbakihb2q"; depends=[boot energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; }; + MVN = derive2 { name="MVN"; version="5.6"; sha256="05d0cy76bwj2dxy6l1jll6n6jfbszm568jbakv8h537a2z8rcavi"; depends=[boot car energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; }; MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; MVR = derive2 { name="MVR"; version="1.33.0"; sha256="1ygz47a2p5r5axql5zsxvsn25pcqyxz6mpw50zfmzrcqdrfa3bg8"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; @@ -2239,10 +2237,10 @@ in with self; { MVisAGe = derive2 { name="MVisAGe"; version="0.2.1"; sha256="1plrzzj7cr2hxk1npadvjnk7sanhilh99l5vrkjjh3l6li2ym09b"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; - MXM = derive2 { name="MXM"; version="1.4.1"; sha256="0vcw518h80i49csrg5n5s35w8gsc7lxcsf85b9rdmmq277s2qzvy"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; }; + MXM = derive2 { name="MXM"; version="1.4.2"; sha256="1kk394m6h3n8ndinhnld0gc32i9bdg438xni63qsc0b0bkv73d3q"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; MachineLearning = derive2 { name="MachineLearning"; version="0.0.2"; sha256="07dpvfmgqidpzvdskrrgbjy5b64w7bg64mia0jipxblxacg8kbnd"; depends=[arules crayon dplyr formula_tools FSelectorRcpp ggplot2 magrittr NbClust rpart rpart_plot]; }; - MachineShop = derive2 { name="MachineShop"; version="1.0.0"; sha256="12afv40fzn82qy2mg5wfcrvqyaica8szdgvk1czagdr1c1zh9fyd"; depends=[abind foreach ggplot2 Hmisc kernlab magrittr party polspline recipes ROCR rsample Rsolnp survival survivalROC]; }; + MachineShop = derive2 { name="MachineShop"; version="1.1.0"; sha256="1207lmsi5lzwy19im8qj7ksnxj0z5wkl2g34948cw9kjcfisyxz1"; depends=[abind foreach ggplot2 Hmisc kernlab magrittr party polspline recipes rsample Rsolnp survival]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; @@ -2250,7 +2248,7 @@ in with self; { ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; }; ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; }; - MapGAM = derive2 { name="MapGAM"; version="1.2"; sha256="1909l0b5yf6c0ri8aylarkjmjnh16cjf1a4plc95yrkjk4y0ckvl"; depends=[colorspace gam maptools sp survival]; }; + MapGAM = derive2 { name="MapGAM"; version="1.2-4"; sha256="13663vnxhjsamjxr7kwkbh52hfxj4hb5bc8iii8nk2yw9rcwrzwm"; depends=[colorspace gam maptools sp survival]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.4"; sha256="1wap0syzgd0w3xla2x4bcasn8zzlj63r5yyf9r479nvifjxdqxzz"; depends=[tkrplot]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.5.1"; sha256="1v7ly1yaglyh257b1q4vc7sfrk41lb4ar9dpwf5ppap581pgpz3f"; depends=[boot magrittr purrr]; }; @@ -2261,7 +2259,6 @@ in with self; { MasterBayes = derive2 { name="MasterBayes"; version="2.55"; sha256="14532l41x5k3z2qg0vklafqyzmn45qny9hlrrgriykajv3xjf2lz"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatchIt = derive2 { name="MatchIt"; version="3.0.2"; sha256="1pp91pw2sy9hik4sgn4gcsp40hb01n9pfccrwdcffwji5fd1aavq"; depends=[MASS Matching]; }; - MatchItSE = derive2 { name="MatchItSE"; version="1.0"; sha256="01ghv3hdlsx6ypvsh7k0mi20yc8vg7z602mhcprhhh97qsb81v6h"; depends=[Rcpp RcppArmadillo]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.0"; sha256="015s3xdaj56prq8lsdry3ibjkrb6gg0fwgzjh496gdx5axvpbk8g"; depends=[Hmisc Matching]; }; Matching = derive2 { name="Matching"; version="4.9-3"; sha256="00mw02379dg6da19glfz9bbbhz902b0ppp9p66rgayd0fmnk9gqz"; depends=[MASS]; }; MatchingFrontier = derive2 { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[igraph MASS segmented]; }; @@ -2275,11 +2272,11 @@ in with self; { MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.1.3"; sha256="1s4hjj7kn2zbyf7b59ywmbs494spz19s9bbxdzkv7bx684lwqvqw"; depends=[dplyr futile_logger lubridate stringr]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.5.4"; sha256="0kwwnki9f67ma6dislf0h17c0jrlqm0n8qhfi0w7g129k820i33s"; depends=[dplyr lubridate rgdal rgeos rmapshaper rvest sp stringr xml2]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.6.1"; sha256="14sklx6ja5s1pv8pnqf7s2xvp83x7ddnzc9hzfp3qvdzyyfvwicw"; depends=[countrycode dplyr geojsonio lubridate rgdal rgeos rlang rmapshaper rvest shiny sp stringr xml2]; }; MazamaWebUtils = derive2 { name="MazamaWebUtils"; version="0.1.7"; sha256="16k6wxwjkdwzx1cqcxpxwaj7i63khly90gyiyfw13di43h8cvsd1"; depends=[dplyr futile_logger lubridate mime stringr webutils]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; - MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; }; + MeTo = derive2 { name="MeTo"; version="0.1.0"; sha256="14hdyh3p3q8yb9w2li2y9pc356jnymsn6n2750zdsrh52b751lpm"; depends=[lubridate]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.0"; sha256="1gggia97ww4kiqhh2lnsmadgdxvpr36mdx1yrbgarj0sp6ilrd3l"; depends=[]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; @@ -2302,20 +2299,19 @@ in with self; { MetaLonDA = derive2 { name="MetaLonDA"; version="1.1.0"; sha256="0pmbq6f5dqq29h56wsrnq3nyk5s281jc8vh89h2wkbj9djay4bw0"; depends=[caTools DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr]; }; MetaPCA = derive2 { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; - MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; }; - MetaStan = derive2 { name="MetaStan"; version="0.0.2"; sha256="0vkyi5jy533swcgrml46jry0n4kclp59dkwm69g808ppl3lrjcif"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; }; + MetaStan = derive2 { name="MetaStan"; version="0.0.3"; sha256="19v0qlcz1jmqnz188y0v64m29l2lrvj7gjkw3xq8dxpdzyizpad4"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; }; MetaSubtract = derive2 { name="MetaSubtract"; version="1.43"; sha256="15xjlzzjyx581kfr33jkn7gw6pnwrd1j7ic28425wzdigm8ym6h4"; depends=[]; }; MetaboList = derive2 { name="MetaboList"; version="1.2"; sha256="15wkj29s1mxi1wzqzlh8lkr5jkw15dbc37h3hzsc0r72a3ddzf38"; depends=[enviPick]; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; + MetabolicSurv = derive2 { name="MetabolicSurv"; version="1.0.0"; sha256="1q2vys8pman6smbqwrgkdxq873ip2z2ynjphxnc1ixp8hr4l5c3z"; depends=[ggplot2 glmnet gplots matrixStats pls Rdpack rms superpc survival survminer tidyr]; }; MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.1"; sha256="13q8s96s71g7nyr6mi5q7jwmf4vx3pcr8l9ixqlc8hglnkd0y6rk"; depends=[C50 caret e1071 mixOmics pcaMethods plyr rlang ropls rpart]; }; MetaheuristicFPA = derive2 { name="MetaheuristicFPA"; version="1.0"; sha256="096k866mgrdgj55rzvdj080z80hzlj0667mydpz7gjaqdfriw8jg"; depends=[Rcpp RcppArmadillo]; }; MetamapsDB = derive2 { name="MetamapsDB"; version="0.0.2"; sha256="0y5szb52karxcqr1f9mb050awprbk1ynckr987aw3d4ia6i9gcif"; depends=[base64enc cluster data_table DBI dplyr forcats future GenomicRanges ggplot2 gridExtra httr igraph IRanges lubridate magrittr Matrix purrr RCurl rgexf RJSONIO RSQLite shiny ShortRead stringr tidyr zoo]; }; Metatron = derive2 { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; }; - MethComp = derive2 { name="MethComp"; version="1.22.2"; sha256="0f9l36d00x054yqgbw0dckc7ldlgap6vnbb03n6n5yz47xxg0ic3"; depends=[nlme]; }; MethodCompare = derive2 { name="MethodCompare"; version="0.1.0"; sha256="0zl20v8k8bhn3skbpzdiglywrqghwf0r42q2jn8zmq4x0drvjzpl"; depends=[nlme]; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; }; @@ -2372,7 +2368,7 @@ in with self; { MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; MonoPhy = derive2 { name="MonoPhy"; version="1.2"; sha256="0997kg8hfwgsc9s155z0wrf7rrhn3vf6681j9psjl3hsspg08z2r"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-9"; sha256="130hv05fwsskk1bvr7fk8bmafq26vimkfgssjdk3zaz0hm3pxrp4"; depends=[quadprog]; }; - MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.5"; sha256="0a62wq448kq10mf1nhdr0nybzzz7d63nxakggpzmkzz4fz0l67bd"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; + MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; Morpho = derive2 { name="Morpho"; version="2.6"; sha256="11v0lv1mfyp252y20jxlr9bym3rh8mcr2v25qhvq1133jr420lyd"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; MortCast = derive2 { name="MortCast"; version="1.2-1"; sha256="13g78q9165b6528pflrfrcay5fl151jy13497g9xcr7dxkjr8ms9"; depends=[wpp2017]; }; @@ -2444,11 +2440,12 @@ in with self; { NIRStat = derive2 { name="NIRStat"; version="1.0"; sha256="1hi8201zslp1f7m3jci8q03y3f1zlcck2x3i793l7lsyl7qbzd1z"; depends=[ggplot2 gridExtra mgcv]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; - NITPicker = derive2 { name="NITPicker"; version="1.0.0"; sha256="0dls638mjkl8qnfx6gnzfa2ba8w6wcnq7np8lmvp9kw7fkqxnslb"; depends=[fda fda_usc fdasrvf]; }; - NLMR = derive2 { name="NLMR"; version="0.4"; sha256="08iy2niqfjijs2s0zkd5247rzslkmlk7969ag8y21mck190qqjs9"; depends=[checkmate dplyr fasterize RandomFields raster Rcpp sf spatstat tibble]; }; + NITPicker = derive2 { name="NITPicker"; version="1.0.1"; sha256="00jmin7y1bp7a4a1qcvv3rkgiy9qij7gbkxcdgpiyzcs6aaif59z"; depends=[fda fda_usc fdasrvf]; }; + NLMR = derive2 { name="NLMR"; version="0.4.1"; sha256="0c91w0pl56k08br4rv6ydg5xbacvwdk60r9w3r8cj1wj7qynywfh"; depends=[checkmate dplyr fasterize RandomFields raster Rcpp sf spatstat tibble]; }; NLP = derive2 { name="NLP"; version="0.2-0"; sha256="0xbhkrnxcbf322jfw31xcn4y2gnk5y7ccq1bz4h3prf44h0whr7w"; depends=[]; }; NLPutils = derive2 { name="NLPutils"; version="0.0-5"; sha256="1jxxly85iajzb9qckkkar0przyxv005cyvry0qi5dkzhbyl5k490"; depends=[NLP qdap SnowballC]; }; NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; + NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.13"; sha256="0d3mg92ky5mhjz6y1903ssanl1lzq4q22yifgjyq29j9snx0jkx1"; depends=[ggplot2 gridExtra MASS netmeta reshape2]; }; NMF = derive2 { name="NMF"; version="0.21.0"; sha256="1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; @@ -2457,7 +2454,6 @@ in with self; { NNMIS = derive2 { name="NNMIS"; version="1.0.0"; sha256="02k766klw2fssiii5f4291qvs144ab9i5b6pmqvhyr87zdb87nf9"; depends=[survival]; }; NNS = derive2 { name="NNS"; version="0.3.8.7"; sha256="0fbqnkhg4dq2ld5l48b3l5aaa7zl4wrkkk7ds6y7a1228xnsaq1g"; depends=[data_table rgl stringr]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; - NOAAWeather = derive2 { name="NOAAWeather"; version="0.1.0"; sha256="077c7z13y2lhjzk2fbb9yfa1ay31dfryxmyg76z7l1a03h20xrvb"; depends=[dplyr ggExtra ggmap ggplot2 gridExtra jsonlite lubridate RCurl scales tcR tidyr]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; NORRRM = derive2 { name="NORRRM"; version="1.0.0"; sha256="06bdd5m46c8bbgmr1xkqfw72mm38pafxsvwi9p8y7znzyd0i6ag3"; depends=[ggplot2 SDMTools]; }; @@ -2475,8 +2471,8 @@ in with self; { NPflow = derive2 { name="NPflow"; version="0.13.1"; sha256="0sq47frh665m8mibif1w3i2z5pb577v1ngdjirbya0a9chpmwc3s"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; NRejections = derive2 { name="NRejections"; version="1.0.0"; sha256="103cs5hlqqk4s5h63lmrqdvajgxwy6ffn3mvy0ayd0n0arppr9ry"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; - NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; NSM3 = derive2 { name="NSM3"; version="1.12"; sha256="0spkzx2zm8q85h7ij9r52bsqlwgw2fsc7zw3aaz8644q0xlnjnvj"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; + NSO1212 = derive2 { name="NSO1212"; version="1.0.0"; sha256="1yk07n9ksbazj27sax5jhs5f84zy80awrvkhziclsqm3h1g3h7w5"; depends=[httr jsonlite]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive2 { name="NScluster"; version="1.2.0"; sha256="04mn9lh4cl1hkz27z7ldqnfwmrvqi7m1zrvscpywdcilpjmcryv0"; depends=[]; }; NTS = derive2 { name="NTS"; version="1.0.0"; sha256="0xpaay5141bnlhsa8n4y61v1jbnckj3x6024bdryabq397ncs1nl"; depends=[dlm MASS MSwM Rdpack tensor]; }; @@ -2484,7 +2480,7 @@ in with self; { NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.4"; sha256="1f8hmabwafjmgx2z381a3m84zfrd0s9x51haa4c1phq41yfq2lm5"; depends=[]; }; NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.2.1"; sha256="05r1hvrxwi2mcq3pv6b699291qg120ijad96s5dah2f6cwx7gm7j"; depends=[gdata vsn XML]; }; - NatureSounds = derive2 { name="NatureSounds"; version="1.0.0"; sha256="1gx0h0z3zc373l0mxcigc25s41l3yiylzsrir5k4rrr2bvzgf8ir"; depends=[]; }; + NatureSounds = derive2 { name="NatureSounds"; version="1.0.1"; sha256="1wd9kngkrxlldkzpvb5gxsbjd8z3m0rbjvbw6ca95zhv37kjz4lh"; depends=[]; }; NbClust = derive2 { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; NeatMap = derive2 { name="NeatMap"; version="0.3.6.2"; sha256="186y06zrh87q6vixl2da2d6apvcj1zkk79c95k081zj5awmryr9b"; depends=[ggplot2 rgl]; }; NegBinBetaBinreg = derive2 { name="NegBinBetaBinreg"; version="1.0"; sha256="0ryi9gdf4sis77c0qxm6r86mfkk1nq9djs297y64nr6ng3rv9p9d"; depends=[boot Matrix mvtnorm]; }; @@ -2494,7 +2490,7 @@ in with self; { NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.4"; sha256="0vsbd650mfqwqqhsd1h92yfwc3rrirr2m29ffv8a9cwppmhkmfqp"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; + NetLogoR = derive2 { name="NetLogoR"; version="0.3.5"; sha256="0nwzpn4qdw5idx9r69nh7bhn8hphjiysqyx721jl0qchp8ssbg51"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.0-3"; sha256="162dhyx7z1nd3z14lfvm3dz0qwwvrc3n17zswbnwcfj6g1b1p2f1"; depends=[colorspace Hmisc igraph]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.1"; sha256="0r51dqymf2nqm86py4zwdlf7qf120j0bg9r6a9c0gsyyijh4z40p"; depends=[graph]; }; NetRep = derive2 { name="NetRep"; version="1.2.1"; sha256="0adlnq22nslp8ildbrf0z26783kzgz4cyn45a981qyjbw4c42hin"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; @@ -2507,25 +2503,25 @@ in with self; { NetworkInference = derive2 { name="NetworkInference"; version="1.2.3"; sha256="1l30xs7342cyczk7vnnhrz8ngbl1j7y9icvyfabvi9zj87rw788q"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.2"; sha256="0c10nahybjd1n0yr78ynbsdnkfa0p7kz6dx3rbwxwsp3x4mrcd6y"; depends=[dplyr expm ggplot2 Matrix]; }; NetworkSim = derive2 { name="NetworkSim"; version="0.1.0"; sha256="1gvhzlmq46p99wald4pjnv9wxxqdympjkh3bzi98qa7qi84lny7y"; depends=[igraph incgraph]; }; - NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.2.2"; sha256="0rdpq6wxh220lc46ww6bkf6fcc8izlq4k8d0svhc6gmgnscp80gz"; depends=[corrplot doParallel fdrtool foreach igraph MASS Matrix ppcor psych pwr qgraph R_matlab]; }; + NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.2.3"; sha256="0ldhrp3r9aqsqblvg249bi2ndgj66x53dm0zm941a6nf7kh6j3zl"; depends=[corrplot doParallel fdrtool foreach igraph MASS Matrix ppcor psych pwr qgraph R_matlab]; }; NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.2"; sha256="0d73rbp8v0k0j8dp4yigan7krhglx6qfbadvyg7nsj67xc00vbfd"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; }; Nippon = derive2 { name="Nippon"; version="0.7.1"; sha256="1nw0kaqw5my2bx7i82q4j2qlsmc95kgjnbm9r9np3swhq6wizrmq"; depends=[stringr]; }; NipponMap = derive2 { name="NipponMap"; version="0.2"; sha256="0jk3zz05vhximbbm15h7ngb0ffxp5w8zhisifipkdgvg1hpi7pb7"; depends=[sf tibble]; }; NitrogenUptake2016 = derive2 { name="NitrogenUptake2016"; version="0.2.3"; sha256="13mh63z3x8yqd31v5a4d10bhzk4y67ac38flwk2msv7qcx37sny6"; depends=[car MASS zoo]; }; - NlcOptim = derive2 { name="NlcOptim"; version="0.5"; sha256="0chrf9ac3x1a0b86lf6wjzdsjcv5n08rav88b7xf4c31lflf1rd1"; depends=[MASS quadprog]; }; - NlinTS = derive2 { name="NlinTS"; version="1.3.5"; sha256="0ihpkyzzd2k5izm84kynj211n8p3qym9hka86bzs3gm256j54q01"; depends=[Rcpp Rdpack timeSeries]; }; + NlcOptim = derive2 { name="NlcOptim"; version="0.6"; sha256="121njnbfww6qijbc9x6prw35glyzm18di01qvvjn62z4kgq4f7vi"; depends=[MASS quadprog]; }; + NlinTS = derive2 { name="NlinTS"; version="1.3.7"; sha256="0s3ij6l1j2gs6adq6mrcbv6g10kda4sc0pg9y89nm0djhfa8zyly"; depends=[Rcpp Rdpack timeSeries]; }; NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; }; Nmisc = derive2 { name="Nmisc"; version="0.3.5"; sha256="1328sfxhkq1lyx8wx2k112iq9lxhg067gnk36vgxpcsq42vdzycr"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble tidyselect]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; NonCompart = derive2 { name="NonCompart"; version="0.4.4"; sha256="0m62jwp572z7gn4rykyr47b6cfi4sy9hxxghhlkjdclkxw7bjxx9"; depends=[]; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="3.0"; sha256="13qk2wbgpdf763q5xg29p2hxwqpml23pcgxrzmx12vnapnqfh71k"; depends=[dr]; }; - Nonpareil = derive2 { name="Nonpareil"; version="3.3.3"; sha256="02w4qxgg3snl32p41c4vg5ip7pmqcn0k3c753k5mvz41ln821sj5"; depends=[]; }; + Nonpareil = derive2 { name="Nonpareil"; version="3.3.4"; sha256="1hhshcggfv92ll5zqh8hd3pldp07n0684yh1252z2jv2vbl87v3z"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; - NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="1.1"; sha256="1sik3iqwqy3wgvxip6nz4gsxh27zpmgfzvpd2251bvc870j09a9w"; depends=[GIGrvg glmnet MASS Matrix pracma pscl]; }; + NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NormalizeMets = derive2 { name="NormalizeMets"; version="0.25"; sha256="0hnyr2aklibbvs6b6q4l0zbb9g8qmp2ds4lqic8a9alqn66sfnf2"; depends=[AUC crmn e1071 GGally ggplot2 htmlwidgets impute knitr limma plotly rmarkdown]; }; @@ -2540,7 +2536,7 @@ in with self; { OCA = derive2 { name="OCA"; version="0.1"; sha256="0kaf46gic8gp8f98y68kqvgm1baicwgvarfiwry1j0bd2rjad64d"; depends=[]; }; ODB = derive2 { name="ODB"; version="1.1.1"; sha256="1hha4rkbc2zh3karkqa0vn4v0nmcd7sljcymy1nh28bx1gx2ffgs"; depends=[DBI RJDBC]; }; ODEnetwork = derive2 { name="ODEnetwork"; version="1.3.1"; sha256="0j6kw32hq9gfiwmyh4zxx7ibfxplhass7q309y8r656lkhvr9nin"; depends=[checkmate deSolve]; }; - ODEsensitivity = derive2 { name="ODEsensitivity"; version="1.1.1"; sha256="06s561450fimn1fvky56nvz9j0nzmbh1hm5x9p1zygsxvzgrks36"; depends=[checkmate deSolve ODEnetwork sensitivity]; }; + ODEsensitivity = derive2 { name="ODEsensitivity"; version="1.1.2"; sha256="0yddv5h3y0xfviqjgrbixawd00jc1rh9ngckfqka5j855vhchh66"; depends=[checkmate deSolve ODEnetwork sensitivity]; }; ODS = derive2 { name="ODS"; version="0.2.0"; sha256="0i7giibass7hadvv6mb7k9xrykgfss57jmm6gpbym8qcywhzq4ny"; depends=[cubature survival]; }; OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; }; OECD = derive2 { name="OECD"; version="0.2.3.999"; sha256="02bldn2c5cnjx171ckqrrb06v50m7zps20sb6k1crmx550vmgajc"; depends=[httr rsdmx xml2]; }; @@ -2573,7 +2569,7 @@ in with self; { Observation = derive2 { name="Observation"; version="0.2.0"; sha256="0v81manzcvv8x9hbf75c8klslzdabha53rasyba91vvcbrshhq6j"; depends=[AGread svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D plot3Drgl rgl shape]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; - Ohmage = derive2 { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; }; + Ohmage = derive2 { name="Ohmage"; version="2.11-4.1"; sha256="0v16awbjb6dmwl6vimlgmq684pjap5mq0a6g0za6m3rzrlh672qr"; depends=[RCurl RJSONIO]; }; OjaNP = derive2 { name="OjaNP"; version="0.9-12"; sha256="170hn5gx48n0i16cd5rwzs5inb4hsvqb7zwixxsg7pami6ild0vs"; depends=[ICS ICSNP Rcpp]; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; @@ -2587,11 +2583,11 @@ in with self; { OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; OpVaR = derive2 { name="OpVaR"; version="1.0.5"; sha256="14kq95i8n0g1wy3s32llw3803qzkxlyz9307clc1bwzi0wp22x5f"; depends=[actuar evmix goftest MASS pracma ReIns tea truncnorm vcd VineCopula]; }; OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.3"; sha256="0mmn4dpk1wl8slg55xzhpk7jdwhkrka53rwmrsr73sikkh3mcyfn"; depends=[digest ggplot2 httpRequest igraph plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; - OpenCL = derive2 { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; - OpenImageR = derive2 { name="OpenImageR"; version="1.1.3"; sha256="0hg0vzmvxnsbamxnfk1n9smvnfyc7xq0zgd6znk3bfid8y0xrxix"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; + OpenCL = derive2 { name="OpenCL"; version="0.1-3.1"; sha256="0vxfsvin35idgvmc22178bq0r5193pdzba3wwv9djz52fzbj7zys"; depends=[]; }; + OpenImageR = derive2 { name="OpenImageR"; version="1.1.4"; sha256="18kjbz5cg2ddx22rq8axs5vjqk2fxn2ximxga6a0nk7432pc2s65"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; OpenML = derive2 { name="OpenML"; version="1.8"; sha256="04m2gi35hykqs4iy3ipvi41cmkv8vg145cpafjrsf98kj7jg4pmv"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.11.5"; sha256="19vsy1dc25jix0jxysdwbgsv0d8yv1p62jzvv8zvrwapk0rfyy0z"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.12.1"; sha256="11p07an8xhjzhrxw1cbjiism496mkgj8rx4hm7fxq8dph02licgl"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; @@ -2599,6 +2595,7 @@ in with self; { OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; }; + OptM = derive2 { name="OptM"; version="0.1.1"; sha256="177b52k3c07iwggggmaiwsn1w4sinqyfys40az3lydcfrc5ihax7"; depends=[boot SiZer]; }; OptSig = derive2 { name="OptSig"; version="1.0"; sha256="1jmnxwci4rzlwgnq4zxhkii9j7ch1bymx44hk3qv7ws24k7g87nn"; depends=[pwr]; }; OptimClassifier = derive2 { name="OptimClassifier"; version="0.1.4"; sha256="0f1szin0isji60gvb0zi240gri6fc4y1s71n96dn5wacdx5b8mhb"; depends=[clisymbols crayon dplyr e1071 ggplot2 lme4 lmtest MASS nnet nortest rpart]; }; OptimaRegion = derive2 { name="OptimaRegion"; version="0.2"; sha256="0xhl7jp2429007jzx305ggfwyx0vh2vxw7l2a7f3c0prklhyqpqc"; depends=[boot DepthProc fields nloptr rsm spam]; }; @@ -2616,14 +2613,13 @@ in with self; { OrthoPanels = derive2 { name="OrthoPanels"; version="1.1-0"; sha256="1g78abh9i3x0g34vjqz2ic9330rbgn8k0hgdcrznxgsfnlgnpx9x"; depends=[MASS]; }; OscillatorGenerator = derive2 { name="OscillatorGenerator"; version="0.1.0"; sha256="0zqw8l955msxkdviw5vd493749zwc22qby9mfmyqnqqmq0pyjw4w"; depends=[]; }; OsteoBioR = derive2 { name="OsteoBioR"; version="0.1.1"; sha256="010l1xhsns1mmc6x6w1kpvzlxms5b92yg379ym2shldyy9dkaj3r"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; - OutbreakTools = derive2 { name="OutbreakTools"; version="0.1-16"; sha256="1ffqfr1pwlf53ahbh01ygv3d2d8fl47k9kk61l2h0g4h601swadi"; depends=[ape ggmap ggplot2 knitr network networkDynamic plyr RColorBrewer RCurl reshape2 rjson scales sna]; }; OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; }; - OutliersO3 = derive2 { name="OutliersO3"; version="0.5.4"; sha256="0mbhbgq9qh74gb8x1hapx4pjik3p7jrls3bg7rg1zzddakxibis2"; depends=[cellWise dplyr FastPCS forcats GGally ggplot2 HDoutliers memisc rlist robustbase robustX tidyr]; }; + OutliersO3 = derive2 { name="OutliersO3"; version="0.6"; sha256="1vqrwbxbjcva7h08hxdc4vmb3vmv2f98y2q0ksmyl25gzzqffi2a"; depends=[cellWise dplyr FastPCS forcats GGally ggplot2 HDoutliers memisc rlist robustbase robustX tidyr]; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; - PAC = derive2 { name="PAC"; version="1.1.0"; sha256="03xwrnb540487xmai34mgjvwi67szp03vmczv0aq410m6g08p5m9"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; + PAC = derive2 { name="PAC"; version="1.1.1"; sha256="07f83i43nxf1s2c26kkpcv4iyq517w20y1l7yg41wnmbfi9xlk7s"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACBO = derive2 { name="PACBO"; version="0.1.0"; sha256="1v3j5bgvf0wh8s4d2yyz0fkc3acdwjlicwnbh1r241b1742x79cb"; depends=[mnormt]; }; PAFit = derive2 { name="PAFit"; version="1.0.0.7"; sha256="0yr5d7286c6k885lrh5445q5vwsl1nkgag2zwixyavk606nr5ldm"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; @@ -2683,7 +2679,7 @@ in with self; { PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; }; PIGE = derive2 { name="PIGE"; version="1.1"; sha256="0pc24rvvxzpgrsx7xsj98n5vd462hjggakzwp36qdkib69yyr4bn"; depends=[ARTP snowfall survival xtable]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; - PINSPlus = derive2 { name="PINSPlus"; version="1.0.2"; sha256="0awwrrrs6vfdprlc91116qa1jsqwizf7xwhwygsi2wqx9qhsxk96"; depends=[cluster doParallel entropy foreach pbmcapply]; }; + PINSPlus = derive2 { name="PINSPlus"; version="1.0.3"; sha256="1lacqj45l4i0j8fqd7vv68q7qbnynrj3rvvfl09lsllmrf05p485"; depends=[cluster doParallel entropy foreach pbmcapply]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-4"; sha256="1zkjq64p34gzbsbmbdqphssnplzz65wpl486qf4yhawnb4wnkj1v"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-5.1"; sha256="1xs3jxbczhkxnp7cyw2yh1jcwha92y9pdsbka1ligbla70bnvxyj"; depends=[base64enc]; }; @@ -2699,13 +2695,14 @@ in with self; { PLSbiplot1 = derive2 { name="PLSbiplot1"; version="0.1"; sha256="1l8d1k913ic0qwxvrrd447p5ni3mzc6v9lv45b7vqrpzkxdci6gy"; depends=[]; }; PLmixed = derive2 { name="PLmixed"; version="0.1.3"; sha256="0n2d7mzviwlw2d1mk3rwhcac170khgfsdivwysqxji2qwgdhgl32"; depends=[lme4 Matrix numDeriv]; }; PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; - PMA = derive2 { name="PMA"; version="1.0.11"; sha256="1v8h66l602zd74mw73ygsy667nqg8p0k0wqhbsjl1imafl207s5d"; depends=[impute]; }; + PMA = derive2 { name="PMA"; version="1.1"; sha256="0vlz89rhm5jxcpv18cpxa396qkqf0ywxhjh17ldbgrnqgsw76r7w"; depends=[impute]; }; PMCMR = derive2 { name="PMCMR"; version="4.3"; sha256="09bvdj2h1086r2cgy3myrhlylplxxlliv8nwx09c8kb1vn02i2ij"; depends=[]; }; PMCMRplus = derive2 { name="PMCMRplus"; version="1.4.1"; sha256="076nzcnky3c3rp88b9vkqxsvws8jy81yb2aw8sa1ddz6b9hx0f4i"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMmisc = derive2 { name="PMmisc"; version="0.1.2"; sha256="03bavk7ylmrrcc49zy9fb2q08w6138b3srxa4x038syr115k3l6k"; depends=[ggplot2 robust]; }; PMwR = derive2 { name="PMwR"; version="0.10-1"; sha256="0z32cfa46mhmwnvlqpw6md9dyyy2hn5mwlrf2v4lx1b1gxqskjpd"; depends=[crayon datetimeutils fastmatch NMOF orgutils textutils zoo]; }; PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.4.3"; sha256="1mckjb6q7ffvzsifjwc411p9r1vykvczk6v7lcsmpzliifgc0ys4"; depends=[dplyr magrittr RCurl readr readxl survey timeDate]; }; POCRE = derive2 { name="POCRE"; version="0.5.0"; sha256="0aph1lmb0xkzm4l4ah2wrx13d138igf4k4w9wb9lca4vv6m7xzqf"; depends=[EbayesThresh ggplot2 pracma]; }; + POD = derive2 { name="POD"; version="0.99.0"; sha256="0dyvb95gbr97440839facyjdy7g8r3lq9h9gc9haqzixjflx4hvs"; depends=[]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; }; @@ -2715,6 +2712,7 @@ in with self; { PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; }; PPCI = derive2 { name="PPCI"; version="0.1.4"; sha256="18q9jjmmmmghwyzpj42k7xa55anvbg1jnqs2y6c5jzlb2cw3ga4h"; depends=[rARPACK]; }; PPQplan = derive2 { name="PPQplan"; version="0.1.0"; sha256="06v4agq8bd3ssbfnl1jyfzy5xi4jwj6wqfmj9qalrv9kllh839mv"; depends=[ggplot2 plotly tolerance]; }; + PPRL = derive2 { name="PPRL"; version="0.3.5.2"; sha256="083al6xi9b62vbx71684bxq2xynvmxw25ak01gwngln1r84gsz5l"; depends=[Rcpp settings]; }; PPforest = derive2 { name="PPforest"; version="0.1.1"; sha256="0iplbw5b2vhqbp6gc123ykzmilwa80akljkv3jzfmi90ckm4k08m"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; }; PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.3"; sha256="1x5rcls49jz19y3h98n2k4kypm8mv8p586clhdj62bvp2nl8wg3x"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; @@ -2739,12 +2737,11 @@ in with self; { PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSM = derive2 { name="PSM"; version="0.8-12"; sha256="0h83b7bhslgnrq4442464i9iil6gjhw3pwxvgz5313pfk2km30vg"; depends=[deSolve MASS numDeriv ucminf]; }; - PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.1"; sha256="1vc13klv1iwyxb4srv4hi88v62hxbm244fg1lj8k5z11kmyii80n"; depends=[pkgbuild]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSTR = derive2 { name="PSTR"; version="1.2.3"; sha256="16iipz8j1v2wxwg90bhvafbb8hsnfmxbq067gg4kabmpla0gnqp5"; depends=[ggplot2 magrittr plotly snowfall tibble]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; - PTAk = derive2 { name="PTAk"; version="1.2-12"; sha256="1phxh2qbzsj2ia2dr6z30lhi765lk1m8lbk57sdgvm14fmi9v5nk"; depends=[tensor]; }; - PTE = derive2 { name="PTE"; version="1.6"; sha256="0y2zqvm2d9minpc22ndq6mar3brbv9k6s1apl19zwpc8h5g3jx5l"; depends=[doParallel foreach survival]; }; + PTAk = derive2 { name="PTAk"; version="1.3-34"; sha256="0ylnag492v1n0pmzsz73w12frhv8c3r3dxgarf58ny0ir0i0ywvl"; depends=[tensor]; }; + PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTXQC = derive2 { name="PTXQC"; version="0.92.3"; sha256="1spkbjji36s2dlhm5b8svpnjmana2jy1ppa0pfgjg7rpsp3369xq"; depends=[data_table ggdendro ggplot2 gridExtra gtable kableExtra knitr plyr proto RColorBrewer reshape2 rmarkdown seqinr yaml]; }; PUlasso = derive2 { name="PUlasso"; version="3.1.1"; sha256="092dwymmx3msj2wg8lrnnxib2y49g4s3yzy6fhfcl5wl0d2779ws"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; @@ -2767,11 +2764,10 @@ in with self; { Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParBayesianOptimization = derive2 { name="ParBayesianOptimization"; version="0.0.1"; sha256="0m6pz9cv1ifj6xc6a216ky5vs9g4dwdwn3gbqrlqkg42n1ndkwnc"; depends=[data_table dbscan foreach GauPro]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; - ParallelForest = derive2 { name="ParallelForest"; version="1.1.0"; sha256="1xa9lfgrvzv7bvv1aaabcfk4372p8x5gxgj463h5ggf9x177lj5j"; depends=[]; }; - ParallelLogger = derive2 { name="ParallelLogger"; version="1.0.1"; sha256="01wb7rqlyp07ahcr4gs0jh92z56v9dsgkbp18y2xdnl7z533fjbh"; depends=[jsonlite snow XML]; }; + ParallelLogger = derive2 { name="ParallelLogger"; version="1.1.0"; sha256="007linzn60bjs8nh1j1jzb292naxajjpkjwmhjc992h8himxfky4"; depends=[jsonlite snow XML]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParallelTree = derive2 { name="ParallelTree"; version="0.1.2"; sha256="0x99x1iycx8ik8cih972awnxifvmhbrmjrf2csmnn9fw4rsqn0p5"; depends=[ggplot2]; }; - ParamHelpers = derive2 { name="ParamHelpers"; version="1.11"; sha256="181p2r4zh53v6hjdr8fn7m1g65rl4svql8h1zjz25y1chk0g850n"; depends=[backports BBmisc checkmate fastmatch]; }; + ParamHelpers = derive2 { name="ParamHelpers"; version="1.12"; sha256="056cmgklr4a1385qjalr12mphaybc1x7a31qbhs319cbc3kbjkdm"; depends=[backports BBmisc checkmate fastmatch]; }; ParentOffspring = derive2 { name="ParentOffspring"; version="1.0"; sha256="117g8h0k65f2cjffigl8n4x37y41rr2kz33qn2awyi876nd3mh93"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; @@ -2803,7 +2799,6 @@ in with self; { PermAlgo = derive2 { name="PermAlgo"; version="1.1"; sha256="16fhdgr4nza9yknsbwiv8pgljfwp8hhva0crs4dbfd0w4j97n5fp"; depends=[]; }; PerseusR = derive2 { name="PerseusR"; version="0.3.4"; sha256="1k03flbnjndx5mm26hysk64z89858m50kjs8gyldm4s5f09iny6p"; depends=[Biobase plyr stringr XML]; }; PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; - PetfindeR = derive2 { name="PetfindeR"; version="1.1.3"; sha256="1dkiawadfsb8akssnhddd64bn6dq6r95c7j4g3mkbq6fs9106h8x"; depends=[dplyr httr jsonlite plyr]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; Phase123 = derive2 { name="Phase123"; version="2.0"; sha256="1sir9b1zqmbzirsc4fwkc7jmhjzrz37qlidldry6q46p4p9fpwga"; depends=[Rcpp RcppArmadillo survival]; }; @@ -2818,7 +2813,7 @@ in with self; { PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.2-2"; sha256="14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"; depends=[]; }; PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; }; Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; }; - PivotalR = derive2 { name="PivotalR"; version="0.1.18.3"; sha256="14l7y57zmfr7h4bq01j83am2plxx320kkhbsh0x2ypif9dni4rf2"; depends=[Matrix]; }; + PivotalR = derive2 { name="PivotalR"; version="0.1.18.3.1"; sha256="1npfi5bdn0f4arp3wpi5ai21ad5fxx3lm7n5wjhvzvcyr6gl38as"; depends=[Matrix]; }; PkgsFromFiles = derive2 { name="PkgsFromFiles"; version="0.5"; sha256="1fbvnlw6hxg6zndyrssiw5yyp6hz3ln985by3vwp34sfwdcwjakl"; depends=[curl dplyr readr stringdist stringr XML]; }; PlackettLuce = derive2 { name="PlackettLuce"; version="0.2-3"; sha256="1w2ihclnh3x83ip4hh95bchv5j832cqy6n140q5q1dbfz6fy1bxv"; depends=[igraph MASS Matrix partykit psychotools psychotree qvcalc rARPACK sandwich]; }; Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; @@ -2830,7 +2825,7 @@ in with self; { PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; }; PoSI = derive2 { name="PoSI"; version="1.0"; sha256="0c08czjvm09mcnkqnas4l22v22r9akgklnacx1j62smk4m546q2m"; depends=[]; }; PogromcyDanych = derive2 { name="PogromcyDanych"; version="1.5"; sha256="1m6sycca44h8kdf9cd67annw6dxxwiscidzfnjrzqmqa4v6n7rsg"; depends=[dplyr SmarterPoland]; }; - PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2"; sha256="1j593sc344h9iy7if1ppihx2qd73dv32d77d8ckac43i7b2lig24"; depends=[]; }; + PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2.1"; sha256="1q89b0nypz2iivmgwg1nb1l7p285wy00s40j3qp8zc78ra1rjhyx"; depends=[]; }; PoisBinNonNor = derive2 { name="PoisBinNonNor"; version="1.2"; sha256="0lvbkbpfm4iva7fmxm1hmma20hnbcsrd1jpy1kq3l60lmxk031wi"; depends=[BB corpcor Matrix mvtnorm]; }; PoisBinOrd = derive2 { name="PoisBinOrd"; version="1.3"; sha256="122z4mqig8hrqlislmazcpjg6q47pmi1pmpw93kyg81016p2gmxi"; depends=[corpcor GenOrd Matrix mvtnorm]; }; PoisBinOrdNonNor = derive2 { name="PoisBinOrdNonNor"; version="1.4"; sha256="14xmq1rcx901fd96aivq6m2vrcj8h1p1pxwkfjpn5dh4kqfy7921"; depends=[BB corpcor GenOrd MASS Matrix]; }; @@ -2846,7 +2841,7 @@ in with self; { PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.4.0"; sha256="1cj6nj5w4ckvnldpc7g4mxdps619zlhzsdibd9ih8i2lxh1xbrfz"; depends=[boot codetools dplyr ggplot2 magrittr MASS mvtnorm purrr stringr tibble tidyr]; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; - PopGenReport = derive2 { name="PopGenReport"; version="3.0.0"; sha256="0z4g7ll3dk9mgawnn7k0ysgj8w55adivc4zcrr898x399g7vnfx4"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; + PopGenReport = derive2 { name="PopGenReport"; version="3.0.4"; sha256="0x9j9f9k65rfr4fxyrxqa9220psfh1bicls6vwbxmqsfdsfnvs0j"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; PopGenome = derive2 { name="PopGenome"; version="2.6.1"; sha256="074vfyfhlqnc38jb0shwp5a4ikvb4jflfghmg88h3a2za3nj4abs"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.2.1"; sha256="09az5wa0zai6axhvrljqdjn74nb7jikqwjqy8f570qxb6jbgfgay"; depends=[BGLR qtl rrBLUP]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; @@ -2873,16 +2868,16 @@ in with self; { PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; - ProFit = derive2 { name="ProFit"; version="1.2.4"; sha256="1frcr40qlraysb5v0cwffbdys4658b4x8kshpmk2z9363z9arc0d"; depends=[celestial cubature FITSio LaplacesDemon magicaxis RColorBrewer]; }; + ProFit = derive2 { name="ProFit"; version="1.2.6"; sha256="0ii001d3z6kmgx70hv4d1gblxz64msn1xcbicshja9cy91qpi1b4"; depends=[celestial cubature FITSio LaplacesDemon magicaxis RColorBrewer]; }; ProFound = derive2 { name="ProFound"; version="1.3.4"; sha256="1kn9kj0vq18jxiavdzx4l4kgyfwjnflfbyqfdihrdfrkz4xz4w3c"; depends=[celestial data_table doParallel FITSio foreach magicaxis RColorBrewer Rcpp]; }; - ProTrackR = derive2 { name="ProTrackR"; version="0.3.5"; sha256="19ilj03w5jpc1hw5avyb780iy3rdbby3kliym0si2zv6gyi9k541"; depends=[audio lattice signal tuneR XML]; }; + ProTrackR = derive2 { name="ProTrackR"; version="0.3.6"; sha256="1lhk3lrspiqcw2ckss52gdjk1f6ph8m7dlb05qxcx8mycq0xd3z9"; depends=[audio lattice signal tuneR XML]; }; ProbForecastGOP = derive2 { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0"; sha256="0dphf6jr72l235v3yjhwi8bqmv6ac7yrbyfwhx4qjrrcdnsb7qhl"; depends=[rootSolve]; }; ProbitSpatial = derive2 { name="ProbitSpatial"; version="1.0"; sha256="0pq5bsjd00qc83c7x8vlpsxdksywlnfg7rlsvb6j21fz9wi3hpas"; depends=[Matrix numDeriv RANN Rcpp RcppEigen speedglm]; }; ProfessR = derive2 { name="ProfessR"; version="2.3-5"; sha256="0q04mjfr2g2l2md8c7nampivg6z4wjv6nfcq13b94sgixak0ww6f"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; - ProjectManagement = derive2 { name="ProjectManagement"; version="1.0"; sha256="06vly1pbg1mcx97d0x7ph3fxjbyap4l108cpchaglx1lk6m378k2"; depends=[cooptrees plotly triangle]; }; + ProjectManagement = derive2 { name="ProjectManagement"; version="1.1"; sha256="0fnwprkbzrr3jfckhwr90ihp7j2divg6h9nxmmcmkj9lkkcmq7ac"; depends=[GameTheory kappalab plotly triangle]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.8.2"; sha256="1yxfx7vi1vvwlk5wzjlkv7q591hq6a5jdv4brzb6v670fmw21kvd"; depends=[]; }; ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.0.7"; sha256="1nammbm9hjsgb46cqvhwx45lfaaxw13d12q43fgwk411a91rblm1"; depends=[deldir GeneralizedUmatrix geometry ggplot2 Rcpp shiny shinyjs vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; @@ -2902,11 +2897,11 @@ in with self; { PwrGSD = derive2 { name="PwrGSD"; version="2.3"; sha256="1iisib4bnb3fp0nwxnal13fgd0fs1vckchr4cj716k72jh6k7slm"; depends=[survival]; }; PxWebApiData = derive2 { name="PxWebApiData"; version="0.2.0"; sha256="0mpasacnlrwb37n221j04fzms63b63nj9z8d4h21nhkhmclrsxgg"; depends=[httr jsonlite rjstat]; }; PythonInR = derive2 { name="PythonInR"; version="0.1-6"; sha256="0m5ppiklg4rqc3czkkb6xvkiw3bv3g6c9qcvs70i7l9gxh34xghv"; depends=[pack R6]; }; - QCA = derive2 { name="QCA"; version="3.3"; sha256="1h5vjcm3rhrs2jxrfx2h81rvbzh35slhpkn0mf13hln5c1hh0s0g"; depends=[fastdigest shiny venn]; }; + QCA = derive2 { name="QCA"; version="3.4"; sha256="1q6ih3k9dzdmmdbjx761awgqjnf9bal4zcc5h614ibak9zfabc0y"; depends=[fastdigest shiny venn]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; - QCEWAS = derive2 { name="QCEWAS"; version="1.1-0"; sha256="0snqg1q9848g8gmxxlz1fhw4cnfxwp28qkfyrpc0yzmkswvysx6v"; depends=[]; }; + QCEWAS = derive2 { name="QCEWAS"; version="1.2-2"; sha256="0h7l6yh5246qhi9m8gr3kl0nrxd6ggq61k6i5vaiqir974b7cd18"; depends=[]; }; QCGWAS = derive2 { name="QCGWAS"; version="1.0-8"; sha256="1wn1kddgfmqv326pihnavbgsbd2yxrlq5s2xgi6kbprssxvj8bk1"; depends=[]; }; QCSIS = derive2 { name="QCSIS"; version="0.1"; sha256="0ibh3060jxf426svdfxiryvfhr8pwk991xs653d50ip4f9290y3a"; depends=[]; }; QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; }; @@ -2914,7 +2909,7 @@ in with self; { QFASA = derive2 { name="QFASA"; version="1.0.2"; sha256="1gfclbalcfcfmb8bq7rp8kpnaqblai9y7n7n7zh4a3qmia5vrz2b"; depends=[Rsolnp]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.2"; sha256="0w1lqknvap3x1kkhx780sfgps3aqiwhl488lk13zz4yji7fcklx3"; depends=[cubature]; }; - QICD = derive2 { name="QICD"; version="1.2.0"; sha256="0ppyl978y7md2n9m4kwhbrgdr5i3df0yw124x84f53w4acipgz5q"; depends=[]; }; + QHOT = derive2 { name="QHOT"; version="0.1.0"; sha256="02z0n2jawd6m7bvyvpcy0j13p1c0zm036g62n56xva18qnq5c9lb"; depends=[]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; QPBoot = derive2 { name="QPBoot"; version="0.2"; sha256="1nxmxayfq2xcjzix080mkc8y52wl3vs0rcwdl8lmhwfawjb4pap5"; depends=[abind quantspec rugarch]; }; QPot = derive2 { name="QPot"; version="1.1"; sha256="1ivkk5wdd1lp6v4hwmpr9g230kd7zgmj0vnv5fw0svwpb8zzz14x"; depends=[MASS]; }; @@ -2935,13 +2930,14 @@ in with self; { QuClu = derive2 { name="QuClu"; version="0.1.0"; sha256="0a2malh9vz5jcjgdx4d98k0c61vz3ip8ynqh5i85x8hzcby11qgj"; depends=[]; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; Quandl = derive2 { name="Quandl"; version="2.9.1"; sha256="1pifih9p6bzr11vw3pgfjx4nfjp7ap3a49mvfgys994bkai5mhhr"; depends=[httr jsonlite xts zoo]; }; - QuantNorm = derive2 { name="QuantNorm"; version="1.0.3"; sha256="1kc8qfa5fwdmk4nfzlkd22968zn44ggr65ysm1l31bhbgjh59ly3"; depends=[]; }; + QuantNorm = derive2 { name="QuantNorm"; version="1.0.5"; sha256="1hds9ybwsgnmcpa22vlmgdq02ilhn0c6a7z1qjiq4i5iqjd4gwf6"; depends=[]; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7"; sha256="069rvh4yfar5dh6aj6p0q61gasvs9wr72x9pnj00lvyjlnv06p5n"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; }; QuantifQuantile = derive2 { name="QuantifQuantile"; version="2.2"; sha256="01bdz8a6nhjil6n2z62x5g41v3d6md5v16g0ladsl5zc8raivqdq"; depends=[rgl]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; - QuantumOps = derive2 { name="QuantumOps"; version="2.0"; sha256="01j0a0ml0b42i3p39rgk73jsbnv9z2njvlaryy7pj02rmj1bbx66"; depends=[]; }; + QuantumOps = derive2 { name="QuantumOps"; version="2.3"; sha256="1raw459alvv0d91nwzz24ylpm4q0bz1nd191pk5i3ski0c73q2b0"; depends=[]; }; + Quartet = derive2 { name="Quartet"; version="1.0.1"; sha256="0f7i9mblp965n6v059cqblp7qbny37xnhqpmk5i4x6gip3szrczv"; depends=[ape memoise Rcpp Rdpack Ternary TreeSearch]; }; QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-10-2"; sha256="1mr43vys9l1n859lzlcakjrvjllybgrwl0p8mc28h7m87yjkj670"; depends=[edgeR mgcv pracma]; }; R_cache = derive2 { name="R.cache"; version="0.13.0"; sha256="1hf5cb7xvnca5zlh9245b5g62sgsaxwdhiv7x59yld37cydakm6k"; depends=[digest R_methodsS3 R_oo R_utils]; }; R_devices = derive2 { name="R.devices"; version="2.16.0"; sha256="1f4jsa7b425rm1a0d00njx0pgvrvnhzf0xz2asq4yjhm4rhz0pbz"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; @@ -2950,8 +2946,8 @@ in with self; { R_matlab = derive2 { name="R.matlab"; version="3.6.2"; sha256="1fw6ny8xb2j088k3s9lzd15av3j6xc2bvbccyrp7yjx2f3s3i8qv"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; }; R_oo = derive2 { name="R.oo"; version="1.22.0"; sha256="0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0"; depends=[R_methodsS3]; }; - R_rsp = derive2 { name="R.rsp"; version="0.43.0"; sha256="0ax6781kfylx0acz0i3sqnpkxmrq73x29wwfic59ng7vj0ws0gyd"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; - R_temis = derive2 { name="R.temis"; version="0.1.0"; sha256="046x4r5a3w87a7fk3iyx9x4c7h2bfz0raxwk8vhslf6ql8y7skan"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; + R_rsp = derive2 { name="R.rsp"; version="0.43.1"; sha256="0i01p8jxc4j4zl2v2ykvvpfnm5hv650zj1wi1dh8hq0c98xi2yfr"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; + R_temis = derive2 { name="R.temis"; version="0.1.1"; sha256="0p4gq13nw10pa0zhaisqb8pgbybrin3lkz6g4bmmqxvvrhgc448g"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; R_utils = derive2 { name="R.utils"; version="2.7.0"; sha256="0cxhn14a57x4gcyrwpfz1d6dw4xh0jcpqkb33hx8imnr340blh7n"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; @@ -2960,7 +2956,6 @@ in with self; { R2DT = derive2 { name="R2DT"; version="0.1"; sha256="0zydrdx6xdlacq6s01jwv4rv6ydmbwmiif40rilp8h76bim0kdbr"; depends=[data_table devFunc plyr]; }; R2GUESS = derive2 { name="R2GUESS"; version="2.0"; sha256="16spx5wq755ar5fvkncikaabrw75hbgnxi7j32vjg8qk4knjiwj9"; depends=[fields MCMCpack mixOmics mvtnorm snowfall]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; - R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-5"; sha256="09p8xrxhcf6biy1mffv31p2hlr19s51f3n67az52f3xv5lyp9wm8"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2"; sha256="1cxr93g0fkdv3lqdh63l2gcp7qn3q42pm1r6nzf35550k9ahkhnv"; depends=[boot coda]; }; R2STATS = derive2 { name="R2STATS"; version="0.68-39"; sha256="09gnccadbrk4zv809vij8b1yj2p4iv27swbm2v9y5045q54jwl37"; depends=[cairoDevice gWidgets gWidgetsRGtk2 lattice latticeExtra lme4 MASS Matrix proto RGtk2Extras statmod]; }; R2SWF = derive2 { name="R2SWF"; version="0.9-2"; sha256="1f7bj2jqm7ys3rimgpsn252j39mw0xd008p3zqi77x1flisla0z3"; depends=[sysfonts]; }; @@ -2978,16 +2973,17 @@ in with self; { RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; RAHRS = derive2 { name="RAHRS"; version="1.0.2"; sha256="0s7vkmyc3yh62m2xbsvajgvi9xdw5x4irnp7rcllhqa7z9nj50c9"; depends=[pracma RSpincalc]; }; RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; + RAMClustR = derive2 { name="RAMClustR"; version="1.0.0"; sha256="09zcgv5vn2wz4w2zkiyvy09p0bwf63y4llzjs79wq6srvg8520i0"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff gplots httr InterpretMSSpectrum jsonlite pcaMethods preprocessCore stringr xcms xml2]; }; RAMP = derive2 { name="RAMP"; version="2.0.1"; sha256="1n8h58j6v1xs6adrr4w4ha7pn1q2fh14dyg7zgpp2smv0j2b33dr"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; - RANN = derive2 { name="RANN"; version="2.6"; sha256="1r6rivh9ba4gwnzryip0aiwsbm46zma7nvd9z5y456p2dgzp9lii"; depends=[]; }; + RANN = derive2 { name="RANN"; version="2.6.1"; sha256="10kid40w9w7vkz2hpcfkdpxr4afxzms5dzvfwr0sl5xynzgw76dj"; depends=[]; }; RANN_L1 = derive2 { name="RANN.L1"; version="2.5.2"; sha256="1hanh3my84mdr5wy6b89fawqzfc184vff1y65wy4l5ld9qza1n44"; depends=[]; }; RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RAPTOR = derive2 { name="RAPTOR"; version="1.0.0"; sha256="1i3p3qa56ghcwh69vv3gnxnw13cbd99ms654j2bqr7g9qb7nl8vj"; depends=[mgcv]; }; RATest = derive2 { name="RATest"; version="0.1.4"; sha256="1r5r10nkdcwrk13hfpv5b7apb0zq6hwxwg22i6smig447s4gk5h3"; depends=[ggplot2 gridExtra quantreg]; }; - RAdwords = derive2 { name="RAdwords"; version="0.1.17"; sha256="1w6fkg7a5dp6s80fzcgs65f0d7qp43l4yawh00ly0b750f2fnxvp"; depends=[RCurl rjson]; }; + RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.4"; sha256="0z08xwdn3vzwmprx5yh2xip5bqk13zrd47lwnsa2yin2phz6yry1"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; }; @@ -2997,6 +2993,7 @@ in with self; { RBesT = derive2 { name="RBesT"; version="1.3-7"; sha256="0ndm97x453bzchi9skrwp2a40kmxd927l5pyy0kshyhl4jckvqj2"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; + RCALI = derive2 { name="RCALI"; version="0.3.1"; sha256="0hc7h55qi8bpmp9rfh1wgxqs28kbs4yqxch2jlgl42vk5383askq"; depends=[splancs]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCMIP5 = derive2 { name="RCMIP5"; version="1.2.0"; sha256="0bwp1ln0y48g2d0bj9b47y0rlwffzv0pi6gjfzv4sg5anhswc9x7"; depends=[abind assertthat digest dplyr Matrix]; }; RCPmod = derive2 { name="RCPmod"; version="2.186"; sha256="0qxk6236xq391czyr043wn8rfml70gkc0xa6vz24s768gxmdk46l"; depends=[fishMod glmnet gtools MASS]; }; @@ -3015,8 +3012,8 @@ in with self; { RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCrypto = derive2 { name="RCrypto"; version="0.1.0"; sha256="1lw7hq5ks36fixk0g3gcy4nw21ygwc14jq840hnhyds4glywfpvm"; depends=[dplyr httr jsonlite]; }; RCurl = derive2 { name="RCurl"; version="1.95-4.11"; sha256="1gwpikvd5r0fjxp4cbn3mz80d52xmlfgx07dk06lc35qylf0jakr"; depends=[bitops]; }; - RCzechia = derive2 { name="RCzechia"; version="1.3.1"; sha256="0zrsjq1mpbw9c0zd0mghy2yx5gjg472mm9gigz4sdx5w5lmabssq"; depends=[curl httr lwgeom magrittr sf]; }; - RDFTensor = derive2 { name="RDFTensor"; version="1.0"; sha256="1yb57hcp161kx33rqfl4vqwcib72byxkxgn9j925bsmrw8ia4sdv"; depends=[Matrix pracma]; }; + RCzechia = derive2 { name="RCzechia"; version="1.3.2"; sha256="03fdw6235q01rjszpjwx0bxbfkfirr50496sa1c5lhr6pfy96q3q"; depends=[curl httr lwgeom magrittr sf]; }; + RDFTensor = derive2 { name="RDFTensor"; version="1.1"; sha256="1xbar13snwyls6rva91bs0632zplfc2qcqlwf7h07r8798m3234s"; depends=[Matrix pracma]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="0.9-9"; sha256="0amlr7mxp7175a7rd3jw7lhyvp3lnr01y81l27sl148sfb85zar6"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDS = derive2 { name="RDS"; version="0.8-1"; sha256="18xn0ci35xs2myzj8rny6pp08cn8ljl3l4fdgaqp05fphgb5fh8j"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales]; }; @@ -3043,7 +3040,7 @@ in with self; { REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; REddyProc = derive2 { name="REddyProc"; version="1.1.5"; sha256="1f0r8pdyghqbgrncar83pj935crf80yqms48sj9yf1jal5px068b"; depends=[dplyr mlegp purrr Rcpp rlang tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; - REndo = derive2 { name="REndo"; version="2.0.0"; sha256="1ly7r9x650vhszb0wylzwhs36bqilnxhyaq8virbw4a9x1aapajh"; depends=[AER corpcor Formula mvtnorm optimx]; }; + REndo = derive2 { name="REndo"; version="2.1.0"; sha256="1xqdxyrg32ymgidmsayv0kgwdsxm8b34hvkn5mghdvhw7rambkm3"; depends=[AER corpcor data_table Formula lme4 Matrix mvtnorm optimx]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; @@ -3057,9 +3054,10 @@ in with self; { RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; }; RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; }; RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; + RGCxGC = derive2 { name="RGCxGC"; version="1.0.0"; sha256="1qxacxqkxcclkj8f1y7b6c5fspp5qk5847fqb1ib05njh6wxsmvj"; depends=[colorRamps prettydoc ptw Rdpack RNetCDF]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; - RGF = derive2 { name="RGF"; version="1.0.5"; sha256="0dd3ziaprarvg2bmm1vci5fpqp2xfa6rk60zx2cagkqgnly152zn"; depends=[Matrix R6 reticulate]; }; + RGF = derive2 { name="RGF"; version="1.0.6"; sha256="11pnbiyp39r95c8ajj2jyxz4h1zf6fi8ki78rmn4vp7xm2bl3zff"; depends=[Matrix R6 reticulate]; }; RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; RGeckoboard = derive2 { name="RGeckoboard"; version="0.1-5"; sha256="0h7x3kdmlba9siwcnf313ajmz2jsmyhl7pndzs7qaqina3hkl46r"; depends=[httr jsonlite]; }; RGenData = derive2 { name="RGenData"; version="1.0"; sha256="124h2qvp0f6cil7zf4ln3n0jlqcfzdwbihzfaklk2lxxn7gq4mbi"; depends=[]; }; @@ -3082,6 +3080,7 @@ in with self; { RIA = derive2 { name="RIA"; version="1.4.1"; sha256="0a332bdyf3jyfk6szw10h5m3vd0y4j2xjbf8yr31ra8a2xq9v45z"; depends=[nat oro_dicom oro_nifti]; }; RIFS = derive2 { name="RIFS"; version="0.1-5"; sha256="0705dhirh7bhy2yf3b1mpk3m7lggg4pwy640lvaspwaxkd6zac5w"; depends=[]; }; RISmed = derive2 { name="RISmed"; version="2.1.7"; sha256="08dmkkxsmwp9b4h2g1bbx03cijn793fsnzkmbima8x9d42vxnm1l"; depends=[]; }; + RIdeogram = derive2 { name="RIdeogram"; version="0.1.1"; sha256="17pn5hi661j2pzr2c2m2h9r9x6bd5dl9q7xjdz8s0jf9fka0r8jr"; depends=[ggplot2 grImport2 rsvg scales]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.1"; sha256="0a4sa60klbpl31qxxvjjbksdhvs3vwm9na1v7014v93fzxy6bjas"; depends=[spatstat]; }; RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; RImpact = derive2 { name="RImpact"; version="1.0"; sha256="010bdq6r2fv4rs78kl1ixnw1di39v90ckh8bblzi0wv4adlbaza4"; depends=[]; }; @@ -3093,10 +3092,9 @@ in with self; { RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.1"; sha256="19ijpcics3pqh452w28d3x4badnnj1qy8l3rx5w433b4p0cc6rll"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.5"; sha256="0p2zqbq29pfjl703wqqjzgmif7yfzz7l8rzarjf5axkdy7w7fcyl"; depends=[]; }; RJaCGH = derive2 { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; }; - RJafroc = derive2 { name="RJafroc"; version="1.1.0"; sha256="0qqilj5fpqjx6m6xc5xg0mhqvl801n40vmsccxal7h5wp7c3aazl"; depends=[bbmle binom ggplot2 mvtnorm numDeriv openxlsx Rcpp stringr]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-3"; sha256="0sm7dkdprmqh319jc43ra7qbk4qq0b2kdj9zs9mjcjz58gcrkl7s"; depends=[rJava]; }; - RKEEL = derive2 { name="RKEEL"; version="1.2.5"; sha256="1939ywx2q61vaphs8i0fpmanwf493ssgdwa0ac6ysdl8h26ks22v"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; }; + RKEEL = derive2 { name="RKEEL"; version="1.2.7"; sha256="13i753gadi9511kpfv8zb0zsgj43cy5pd47yw29nsz1jdzaafgsa"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; }; RKEELdata = derive2 { name="RKEELdata"; version="1.0.5"; sha256="1swzqw6j006ya48ahg6n1g8faxhqiv9v5q1zrnihpzj6868lf7y3"; depends=[]; }; RKEELjars = derive2 { name="RKEELjars"; version="1.0.19"; sha256="1a879b0xq5jk7r2pf4n41nm0c4himl4yqw083xh2ha4qdhab5kq0"; depends=[downloader]; }; RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; @@ -3105,12 +3103,12 @@ in with self; { RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; RLumModel = derive2 { name="RLumModel"; version="0.2.3"; sha256="059nqbvy13jjgzhp4n9afqkc3dbv06aml5v5ffkhpx8kcmv48xp1"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; - RLumShiny = derive2 { name="RLumShiny"; version="0.2.1"; sha256="1iqayrz0bkyqa7c93cv9873acqjncw3z6rnwwpcgsn1wf40bd6pj"; depends=[data_table DT googleVis knitr Luminescence readxl rhandsontable shiny shinydashboard]; }; + RLumShiny = derive2 { name="RLumShiny"; version="0.2.2"; sha256="0rwl555564ccw4pdzya88s3h3q30iq5dmi77141ji8ir91x4rz3g"; depends=[data_table DT googleVis knitr Luminescence RCarb readxl rhandsontable rmarkdown shiny shinydashboard shinyjs]; }; RM_weights = derive2 { name="RM.weights"; version="2.0"; sha256="1by1z7gwwx0jjhhvsjkr7f6m7n0x43bj080ah5275cja7xqr5nm6"; depends=[Hmisc psychotools]; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; RM2006 = derive2 { name="RM2006"; version="0.1.0"; sha256="1qjvdh89jql1fl6ia76g766y1igkshlv0slqmpi0y3bn40413snb"; depends=[]; }; RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.3"; sha256="0spc0vszbxfpfp3kqdj0gnb90nvn50qwalq3mw8151b8h1swmf3l"; depends=[chron date vars]; }; - RMCriteria = derive2 { name="RMCriteria"; version="0.1.1"; sha256="195kamlc9qfpnv5vbimqn3m0qzac8ixy2b26xm533m51rv5k9njd"; depends=[dplyr ggnetwork ggplot2 gridExtra linprog lpSolve network pastecs Rcpp RcppEigen RcppNumerical]; }; + RMCriteria = derive2 { name="RMCriteria"; version="0.2.0"; sha256="1bdlvb86zqjjpfd6ixjzf9c7r8h6nmzwf646274c76a59523izxk"; depends=[dplyr ggnetwork ggplot2 gridExtra linprog lpSolve network pastecs Rcpp RcppEigen RcppNumerical]; }; RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; RMOA = derive2 { name="RMOA"; version="1.0.1"; sha256="1ppbwqdfxzk1ayms0rqw22l0r8vkk8av39spwpq8avgl6vssw8c4"; depends=[rJava RMOAjars]; }; RMOAjars = derive2 { name="RMOAjars"; version="1.0.1"; sha256="0qzpwsbndn8fw9560z9h9w9ff9bx6xj7mr50683q1n3dpn5z637i"; depends=[rJava]; }; @@ -3119,10 +3117,10 @@ in with self; { RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMallow = derive2 { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; }; RMariaDB = derive2 { name="RMariaDB"; version="1.0.6"; sha256="19pjxgz9h3bb89ra6ha6mbnzyz1sagmm82qd57y0rbrsvwn0pk2i"; depends=[BH bit64 DBI hms plogr Rcpp]; }; - RMark = derive2 { name="RMark"; version="2.2.5"; sha256="16nbm8fl8zdllgkx2hcjziakfrdwahxzn6d5mwigd4wcyvygkzzv"; depends=[coda matrixcalc msm]; }; + RMark = derive2 { name="RMark"; version="2.2.6"; sha256="0ihidwk7fbjjh6qmrd3rjmk2yjrjdf7a53sdnh6ynkjkzlqb2gr7"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.15"; sha256="0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.16"; sha256="1gh4b730g2v78jg5iln8fkz808ri2vhnhnw43wzkkjpy53jh48sp"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.2"; sha256="07wk0i8iz3cvkiqawxhm61g3nka8adw0zrrv60zx329gg49w0ycl"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.4.0"; sha256="17gkhmnrxa1zwh6qhc0x48smgyq35g5gdb4wv0m5pnbyhkqzs7sq"; depends=[RRNA]; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; }; @@ -3131,42 +3129,43 @@ in with self; { RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; RNGforGPD = derive2 { name="RNGforGPD"; version="1.0"; sha256="11n7fl1rrgnknn61qw6dh74amhakkjk5wyg0rms554lw9cn86x2v"; depends=[corpcor Matrix mvtnorm VGAM]; }; RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; - RNOmni = derive2 { name="RNOmni"; version="0.5.0"; sha256="1vfyri5mpc67295kmqg1vxc1brg6piyljgv3k62f6k0ynvddyd9x"; depends=[abind foreach plyr Rcpp RcppEigen]; }; + RNOmni = derive2 { name="RNOmni"; version="0.6.0"; sha256="0bc6ldnl91njv01xcssrkbd7nmnr9njffdbkzlhyan47ca5jm8fr"; depends=[abind foreach plyr Rcpp RcppEigen]; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.2.0"; sha256="0hi8dc1va1nvbzh66n76kfv5dzb6lla52nvwwvm80pz3kh80h88q"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr tidyr uuid XML xml2]; }; + RNeXML = derive2 { name="RNeXML"; version="2.3.0"; sha256="0wyvkv1ifagir4acjivdnns6vwnzdy3a5h8pnvy4qzzly90y2lla"; depends=[ape dplyr httr lazyeval plyr reshape2 stringi stringr tidyr uuid XML xml2]; }; RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="1.9-1"; sha256="0idfskxb1k8x0zzl6b0kgskdxn7zr49gw9xcj870ah9zp93iwnkx"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; RNifti = derive2 { name="RNifti"; version="0.10.0"; sha256="07sfzps4yg5zdhbxh6i4rbjvbjvvf2d8i9jcf64ywbmi557sw1zv"; depends=[Rcpp]; }; - RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.4"; sha256="15sgp008pk7sqdziv62r0kcg9hsgi1zi04ap8b6y8l1r19pcryb3"; depends=[ore Rcpp RcppEigen RNifti]; }; + RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.5"; sha256="0dj18ialdvknxjndzgq7n3zhvy58s7ccpkx6acx8flxvaraaczwk"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; ROCR = derive2 { name="ROCR"; version="1.0-7"; sha256="1jay8cm7lgq56i967vm5c2hgaxqkphfpip0gn941li3yhh7p3vz7"; depends=[gplots]; }; ROCS = derive2 { name="ROCS"; version="1.3"; sha256="11vdf8701ap6ya7c7kx9jhvg7qfc6vkij3jridna6f4xj384grki"; depends=[poibin rgl]; }; + ROCit = derive2 { name="ROCit"; version="1.1.1"; sha256="1bip1zz5chm06pfikkscahph2clsaf9rhhpsla6vmvpfy0d8p070"; depends=[]; }; ROCt = derive2 { name="ROCt"; version="0.9.5"; sha256="0f7day0rv62ggm1nc7qkh45r6svr84mdk7xxpdf09pi4lbdx0rm6"; depends=[date relsurv survival timereg]; }; ROCwoGS = derive2 { name="ROCwoGS"; version="1.0"; sha256="029nramxwhzqim315g1vkg1zsszzkic28w6ahwg9n7bk9d08adzk"; depends=[]; }; RODBC = derive2 { name="RODBC"; version="1.3-15"; sha256="0m37b5ccdh4imbhmk7gj795fys2pcb9d0zx0xx2qanfrf54gk6kk"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; RODBCext = derive2 { name="RODBCext"; version="0.3.1"; sha256="06ky97k93bbrlxm4fg770mnz6yqp2zzgwmvzdqrpanfbg7qkfwwn"; depends=[RODBC]; }; RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; }; - ROI = derive2 { name="ROI"; version="0.3-1"; sha256="00mi22z7gs77pixi4090l5wh67s2pfm45cf3bmy7p3c3nlim24fp"; depends=[registry slam]; }; + ROI = derive2 { name="ROI"; version="0.3-2"; sha256="0kx71843sfbml05kdbaf9lx67aqcjhdk4klg8yr020j5100cf17w"; depends=[registry slam]; }; ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1"; sha256="0cr4iy4p590zsp47jqyrvhamc4xa9nkpnnddmwqbkgvzmzxf83ap"; depends=[globalOptTests ROI]; }; - ROI_models_miplib = derive2 { name="ROI.models.miplib"; version="0.0-1"; sha256="1viqr0dqza9386m9xmfdm5riaczp4izf3bd2jk70cmdgypjj6mzg"; depends=[R_utils Rglpk ROI]; }; - ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.0"; sha256="13ai7zkd00a03vyzfy1sm64cx8328xzwz5v8yw0shkdz5rchaq2d"; depends=[ROI]; }; + ROI_models_miplib = derive2 { name="ROI.models.miplib"; version="0.0-2"; sha256="1brlqyprvrq32ww36j3aa4nqfcn1q1mfv58vv92rlv23cb6b94sv"; depends=[R_utils Rglpk ROI]; }; + ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.1"; sha256="0dhiiyw9srlih3x381jlgl11y0vr9qyn91b7xi208a0vpsmassa7"; depends=[ROI]; }; ROI_plugin_alabama = derive2 { name="ROI.plugin.alabama"; version="0.3-1"; sha256="1b70qnm7s5gdcpn7y61gbwcln7r48gvp6hkmdwrvz1qvlsgaz6rk"; depends=[alabama ROI]; }; ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.4"; sha256="0fzrb4q2mcf3j4d4j8r354n6fyv2rik0ypp01l54zbm8s2r29bwb"; depends=[clpAPI Matrix ROI slam]; }; ROI_plugin_cplex = derive2 { name="ROI.plugin.cplex"; version="0.3-0"; sha256="1ipwvclrxws7nvirvns58gpakg23ldiphyl6g0akxk5hczr0lazf"; depends=[Rcplex ROI slam]; }; - ROI_plugin_deoptim = derive2 { name="ROI.plugin.deoptim"; version="0.3-0"; sha256="15b5151xmwmmqgiwj4sy1agc9abk8dd2q95lva3ilkjj2j8y0zrh"; depends=[DEoptim DEoptimR ROI]; }; + ROI_plugin_deoptim = derive2 { name="ROI.plugin.deoptim"; version="0.3-2"; sha256="1crmmmxfqcrwp51c74i2s7gdq3rj1imwr8zhwl6xcnjsg24snm3q"; depends=[DEoptim DEoptimR ROI]; }; ROI_plugin_ecos = derive2 { name="ROI.plugin.ecos"; version="0.3-1"; sha256="1d409hc4cnd1q9d5ldylygis82a4ha1hfbqq36vn7n4xx89wf0k3"; depends=[ECOSolveR Matrix ROI slam]; }; ROI_plugin_glpk = derive2 { name="ROI.plugin.glpk"; version="0.3-0"; sha256="1a1vag47lfhiqmplrbkp95k36angpi9nvh0jd4cgy5y2416w22hn"; depends=[Rglpk ROI]; }; ROI_plugin_ipop = derive2 { name="ROI.plugin.ipop"; version="0.2-5"; sha256="0xampxba8s9kigxv4xj6nb8a7a02w1aj4ansj99z8m7qg0bg2ivv"; depends=[kernlab ROI slam]; }; ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="0.3-2"; sha256="0jc6v5xx50gl86ard34k1r32mjqr4hi8ribqm6jkfz68csmzgy6n"; depends=[lpSolveAPI ROI]; }; ROI_plugin_msbinlp = derive2 { name="ROI.plugin.msbinlp"; version="0.3-0"; sha256="00zvjqq2sj7iaymc0lrf5lmqfbqilwh8llmq841lvsmbps45w41k"; depends=[ROI slam]; }; ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="0.3-0"; sha256="0hs64qbna8ggmn83g903kbxiyv5ghh2454xca0caf14x9lszv02j"; depends=[ROI xml2 xmlrpc2]; }; - ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-1"; sha256="1cy6q0cchd4rqmd2gxmg83q7cg93w6nnafjqsjxlj13773jr46f0"; depends=[nloptr ROI]; }; - ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-0"; sha256="0hwjgwmaclq6y5mfmykjrchpyb632qzwcvvs1nnanmrh3yhfmpg9"; depends=[optimx ROI]; }; + ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-3"; sha256="0ls241xahmd77q2s02mpzr1i10nq5vqgic5j786y9q00f6c3lxyd"; depends=[nloptr ROI]; }; + ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-2"; sha256="13dfczn6dl4d1sx15davn5f4vcri7lk2zzh8ib28268lbwh9ma2s"; depends=[optimx ROI]; }; ROI_plugin_qpoases = derive2 { name="ROI.plugin.qpoases"; version="0.3-2"; sha256="1mclf6nf9ci331pgf3mw2fci502991vfzkiqx4l2l6n662jpxpqy"; depends=[checkmate Rcpp ROI slam]; }; ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.2-5"; sha256="1c4fd16kgg60gfs52xc64ii4kzl8fb8qz3rpy69d08avb4q6grir"; depends=[quadprog ROI slam]; }; ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="0.3-0"; sha256="0krlrmw85j1g35pvh4ig10djb6y6akyrfymkfk4dqg751w7mb4fm"; depends=[Matrix ROI scs slam]; }; @@ -3184,7 +3183,7 @@ in with self; { ROptSpace = derive2 { name="ROptSpace"; version="0.2.0"; sha256="119b3q43rkqhyprs0vx9wwsddq3awbj2mizzwqhpjjzz4gp5v866"; depends=[Rdpack]; }; ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; - RPANDA = derive2 { name="RPANDA"; version="1.4"; sha256="005dc04h0lv2fi6i3qspyqyd0c134ad9c80ar3m6ahqzk369kq6w"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc geiger glassoFast igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; }; + RPANDA = derive2 { name="RPANDA"; version="1.5"; sha256="0p91096304g6rz639rwwvbppypf5aqj7765xjm3mqpi0gnp48s62"; depends=[ape cluster corpcor deSolve fpc geiger glassoFast igraph mvMORPH mvtnorm phytools picante pspline pvclust Rmpfr TESS]; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEXE_RPEXT = derive2 { name="RPEXE.RPEXT"; version="0.0.1"; sha256="0m5ml8ywxrf66mjz6m3xp1lajd7wdq9g7xsaln8n7ykq7h5615fc"; depends=[]; }; RPEnsemble = derive2 { name="RPEnsemble"; version="0.4"; sha256="0y9g22swcz0m5jbzi87ahxw27fb3jlf3iwvxb73kkzixqlvksw9y"; depends=[class MASS]; }; @@ -3196,14 +3195,14 @@ in with self; { RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.6-2"; sha256="1mdhw5821v2h7hpa53v10wz53k4i90r0vb6a3dia5gq8f9j1h088"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.1.1"; sha256="1s25lkb69dkc5zk5ikbqa325jw5kfavghsq7s26mrcng4va9dz6i"; depends=[BH bit64 blob DBI hms plogr Rcpp withr]; }; RPresto = derive2 { name="RPresto"; version="1.3.2"; sha256="14cwdm1r7x97l086hczrkaskx21agi7d8isklnkplchq5gnqs9ir"; depends=[DBI httr jsonlite openssl Rcpp stringi]; }; - RProbSup = derive2 { name="RProbSup"; version="1.0"; sha256="1x4rnq49sh3if5fq863ymncya87yqxgwwpqfjghz8s4winfaf10y"; depends=[]; }; + RProbSup = derive2 { name="RProbSup"; version="2.0"; sha256="0rmfr2pwfy6wx4mfjlj56k1fjlk5pvf98a82f2z5wzv9wb6ddzi5"; depends=[]; }; RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.13"; sha256="0kq8y0jkjq3ggxr86yj7666n6pvhidhrrh2kjw9c7nij6phay9km"; depends=[Rcpp RCurl]; }; RPtests = derive2 { name="RPtests"; version="0.1.4"; sha256="1r30pslbjq3dip41la81jlin2vhxdmayg902x9ryjy554awfgh7j"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.1"; sha256="15cb1zlfnjaf5z4dqx3xrkbkja152ah7jhs21qhvfl20qz4cyh7r"; depends=[curl jsonlite]; }; RPyGeo = derive2 { name="RPyGeo"; version="1.0.0"; sha256="1alqgx6blqqwxm76w05g82kc2icx8nvjw7qkdz73gf9ckgza5bb3"; depends=[magrittr purrr raster reticulate rmarkdown sf stringr]; }; RQDA = derive2 { name="RQDA"; version="0.3-1"; sha256="1kqax4m4n5h52gi0jaq5cvdh1dgl0bvn420dbws9h5vrabbw1c1w"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; - RQEntangle = derive2 { name="RQEntangle"; version="0.1.2"; sha256="098s9wxcdxcarvrpn2r88kd9lyshiv9z42k6d2mlqkbcwxpz82vn"; depends=[iterators itertools]; }; + RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; RQGIS = derive2 { name="RQGIS"; version="1.0.4"; sha256="0x4jilj5nbikgkcg09913v3dgnfw0aqwwx66xajsfk5lqi6w5vjz"; depends=[raster RCurl readr reticulate rgdal sf sp stringr XML]; }; RQuantLib = derive2 { name="RQuantLib"; version="0.4.7"; sha256="0km42yxkwrfapf0vrwjdyxvnbpfz9dyxbfpqcjy4cw0icgchzj6p"; depends=[Rcpp zoo]; }; RRF = derive2 { name="RRF"; version="1.9"; sha256="1j8s07h0bn8imi0g1lkdwismisd6m4v454nldjp5jl11lffyiiaq"; depends=[]; }; @@ -3222,7 +3221,7 @@ in with self; { RSDA = derive2 { name="RSDA"; version="2.0.8"; sha256="1lnqncjmqci6lbdm2pph6ankwb9vhwi7mvgjip2qvc2ydgyv6gy9"; depends=[abind dplyr FactoMineR ggplot2 ggpolypath glmnet lazyeval nloptr pander princurve purrr randomcoloR reshape RJSONIO rlang scales scatterplot3d sqldf stringr tibble tidyr tidyselect XML xtable]; }; RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; RSEIS = derive2 { name="RSEIS"; version="3.8-3"; sha256="1qrv41r17svz7dyzz1sik5zyqck29mzzxrjhj5q6mvrwag3x7fi5"; depends=[RPMG Rwave]; }; - RSGHB = derive2 { name="RSGHB"; version="1.2.0"; sha256="0rzmpx95ac8z625rz3sa9hgzv269q0fdq0crl8hdf1yyzrhrjr3d"; depends=[MCMCpack]; }; + RSGHB = derive2 { name="RSGHB"; version="1.2.1"; sha256="07iz1i04069vdns73zn0qna7lxmc3zlpmxwvxmajwbirs9db6lc3"; depends=[MCMCpack]; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; RSNNS = derive2 { name="RSNNS"; version="0.4-11"; sha256="0z27rgbqa1lsxvcqyl1456mb0pigvkrx099hdqv7zr4ax4k33547"; depends=[Rcpp]; }; @@ -3237,19 +3236,19 @@ in with self; { RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; - RSelenium = derive2 { name="RSelenium"; version="1.7.4"; sha256="0djd6bgy2vr85pmcvnq0h2dji20laz852kpn9q8rswxgqb59lqk2"; depends=[binman caTools httr openssl wdman XML]; }; + RSelenium = derive2 { name="RSelenium"; version="1.7.5"; sha256="1ih22z3p1p673dhbjsfmli94bzqp5xk3psslf4c0r9dvmw9h6s5c"; depends=[binman caTools httr openssl wdman XML]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; RSiena = derive2 { name="RSiena"; version="1.2-12"; sha256="1bc0vdqqzkf3q3b6rzqiwd29lcq8vbvlj2qkxbx6v8wjphycz6rw"; depends=[lattice MASS Matrix]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.15"; sha256="13mrqf458m43g435g4pbg49pid63f4ap1r8jzl84mvj1b36hy4q6"; depends=[base64enc digest httr jsonlite plyr stringr]; }; - RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.2"; sha256="0phkk79ng4r54w3d4ajl505gs8svlzdf1g6q50lhraq2cbllbvgx"; depends=[RCurl]; }; - RSocrata = derive2 { name="RSocrata"; version="1.7.4-7"; sha256="1cblp0fq7836jkb8cps3l1f8gx25bsdclkjvmxmd4b79y4hapiy2"; depends=[httr jsonlite mime plyr]; }; + RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.3"; sha256="02zswadv65a5p5q9rr12f819mh7jjqk8xj1kc1c0wqvr8dgz7fx9"; depends=[RCurl]; }; + RSocrata = derive2 { name="RSocrata"; version="1.7.5-3"; sha256="009psb53z0ack0fhxxdchywba3wgdi33fmm8r14fiv1bnb0abh6j"; depends=[httr jsonlite mime plyr]; }; RSpectra = derive2 { name="RSpectra"; version="0.13-1"; sha256="1sw80chwyyjzf5px278l6xmp94yhwrlj5xh8d3wlw3dnvdkycca7"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.2.3"; sha256="06b54g186bwgl5g8wkbj6q05bdy6sqvx433xwwvj7az1qxpa5kwr"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; + RStoolbox = derive2 { name="RStoolbox"; version="0.2.4"; sha256="1lj3jlmlg1cffkpi0x5mjl0ypppjxcsl5zamxvld9ng8m2pgkbm7"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; - RSuite = derive2 { name="RSuite"; version="0.34-248"; sha256="0a34zlpnc79f2rv1bi5xx69bg3zkk4xrwg3dh0dyzkrhdn47dd3d"; depends=[devtools git2r httr jsonlite logging processx roxygen2]; }; + RSuite = derive2 { name="RSuite"; version="0.35-250"; sha256="1522jki4cmp5sa9m7bny4waip2f27whs4kl0nn5sfn13hc1jmfds"; depends=[devtools git2r httr jsonlite logging processx roxygen2]; }; RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0"; sha256="0p57pb3p6j0g4ngzikys9i4d02p4dc4k0s8k7r1wgdmdy2rak3k2"; depends=[downloader dplyr ggplot2]; }; @@ -3265,7 +3264,7 @@ in with self; { RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.7"; sha256="16mrhbjg0s09vqxwllsm1q7wzx0kma7gfzyh0szhcf62z5y0a2x1"; depends=[future future_apply Rcpp]; }; RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-70"; sha256="1cxg5pc95sf3yiaglqis9qh7inzwqryk4z9nlxd4i06ys592wnp9"; depends=[ade4 boot car cramer FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-71"; sha256="1vw3yamh1h67lmwmdfmf88197qiagrgfqxpkdfmbjvk9lr3ybmwf"; depends=[ade4 boot car cramer FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.7"; sha256="08mhn6732sb284y4garx0nvhad4r42pk39p3r82fad4c1c3rxkhg"; depends=[]; }; @@ -3288,7 +3287,7 @@ in with self; { RZigZag = derive2 { name="RZigZag"; version="0.1.6"; sha256="1sb1lmm5vnzkbzqxbmipkm2zb01zg2x15jgyrsplardyy8kpqxn7"; depends=[Rcpp RcppEigen]; }; RZooRoH = derive2 { name="RZooRoH"; version="0.2.2"; sha256="1y525363hd307nrllh1k7dnaiyfz3rslxjayqhxmlawknq0pbg6p"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaPKod = derive2 { name="RaPKod"; version="0.9"; sha256="1qxzi2lf431zd44bcd98ybhzydy1cz12g864l6r668jk91aqy1qg"; depends=[kernlab MASS proxy Rcpp RcppArmadillo]; }; - RaceID = derive2 { name="RaceID"; version="0.1.2"; sha256="0587dy2hyq1mp7cbi0715pnl2874v9lkqj022nxqmck48p5gnl9v"; depends=[cluster coop FateID fpc ica igraph irlba locfit MASS Matrix pheatmap quadprog randomForest RColorBrewer Rtsne vegan]; }; + RaceID = derive2 { name="RaceID"; version="0.1.3"; sha256="1kmhjqhm6v4blwnll67b79ywrpsiygipz30nylxfi0030p37bld2"; depends=[cluster coop FateID fpc ica igraph irlba locfit MASS Matrix pheatmap quadprog randomForest RColorBrewer Rtsne vegan]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.4"; sha256="1ri6ybzhfdgbrbfcy12mmvv2ipg61az7vwp1dbjyzs8mgsc1cxb5"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; @@ -3307,7 +3306,7 @@ in with self; { RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.94"; sha256="0ak6cpm073ym4h9l3j7pq0ks9h4is1hzxfjn52j23nc5ifq3fjpq"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.1.1"; sha256="1n1282pym7q2b1bh18wlkmk9f0simzq149h7hacc23vyqzgkjs84"; depends=[]; }; - RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1"; sha256="0m6r11ksryzcfcm265wr9fhwb867j9ppfhalvvygzig5j85sg92k"; depends=[PBSmapping RANN RgoogleMaps sp]; }; + RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; Rarity = derive2 { name="Rarity"; version="1.3-6"; sha256="1m742qrgc0c5vda9sb2q5n3ghmqnlnfhr1cfpxfs7s5ic707gmlb"; depends=[]; }; RaschSampler = derive2 { name="RaschSampler"; version="0.8-8"; sha256="0y7dkgv1cy6r1mbmyqm27qwl10rl12g1svpx9jkzq5hq0hnm2xhw"; depends=[]; }; RateDistortion = derive2 { name="RateDistortion"; version="1.01"; sha256="1micjlbir1v5ar51g1x7bgkqw9m8217qi82ii6ysgjkhwdvpm075"; depends=[]; }; @@ -3333,14 +3332,14 @@ in with self; { RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.37"; sha256="1l990nv5xb6slpk7s5k662ln5gp190g0rr3qxrbh44z0j9vnxl2p"; depends=[Rcmdr readstata13]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.38"; sha256="0k5lhjmvafbngxflv7g82fvk2snzz6lskqil5msy5lcnys3nmakl"; depends=[Rcmdr readstata13]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.6-0"; sha256="07k9x3mdaqzk1503wjsha9f8bxzw1074i9g7sa16yqz5lwky4lr7"; depends=[FactoMineR Rcmdr]; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; }; RcmdrPlugin_GWRM = derive2 { name="RcmdrPlugin.GWRM"; version="1.0.2"; sha256="01q4k9s815pgd5cavm6nyxy5npmpxryari9v6wys4n5cjpn5g6xq"; depends=[GWRM Rcmdr RcmdrMisc]; }; RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-47"; sha256="1bba11izs1jhjsyb0d45c34gcihapk231qbiabcxf8x93sdmg6ga"; depends=[HH lattice mgcv Rcmdr]; }; - RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1"; sha256="1lk7divj5va74prsnchq8yx9fbyym7xcsyqzkf72w448fgvvvwlv"; depends=[Rcmdr]; }; + RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; }; RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-5"; sha256="069kpvhflk0rwwll0vyxfdrln1lzr1zhzfzm39si63ji6v7l6msb"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; }; RcmdrPlugin_MA = derive2 { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; }; RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.2"; sha256="1ynj42p12ncgrbghd8w7mkyys2cq9r9dpbir57rj3k5l46yzj7d5"; depends=[ordinal Rcmdr]; }; @@ -3377,27 +3376,27 @@ in with self; { RcppAPT = derive2 { name="RcppAPT"; version="0.0.5"; sha256="0188sabgfmgh83yr3hmqpg5cmhllfkxzbxxchqr2r2fmj6x0ib1a"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.2.0"; sha256="0sq482qzg3xa52ny2xfvj4vrrfnk0qng4fqmw5jfaqr806r7sbrp"; depends=[gmp Rcpp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.11"; sha256="1ik50ancfgcvh03n4jsqwjk8lf056rbgd70q4l4didmvh5kcyjd1"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.9.200.5.0"; sha256="09041jnalh7352kj6lv4d0xr9c0mvf8p860q5c8m13mp214x5x7k"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.9.200.7.0"; sha256="11m04yvdh6086567dzzxchbf68fl5hxf2y32acf3f43bjqgwbv2p"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; - RcppBlaze = derive2 { name="RcppBlaze"; version="0.2.2"; sha256="0hi7gh7xlmdcyzxsis8wl841d6czbcgb8qdg8y822am1mvc0wmb7"; depends=[BH Matrix Rcpp]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.5"; sha256="03r7qfhxmn20925yjvqs5cbm255yk4kbrvw16dl2r98argblcmmk"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.10"; sha256="175bn75akwgz3vcp0n59kiqqz7q9cwkvih241nj8v810cp4gpmkp"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.2.6"; sha256="0vfv9v213v7z3y8rg0kn7w6vwvwxg8gmm2s8h8aa44xfi9q1wia2"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.2.7"; sha256="06iawssgsh10ga7hz42wrf44a1c6y1f37m3d88qv0lnfmh8djhhm"; depends=[Rcpp]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.11"; sha256="0aap391fh84342s64v5k43a1vy3cwzg01q3g6ry7mmd2d5h1vv1g"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; + RcppDynProg = derive2 { name="RcppDynProg"; version="0.1.1"; sha256="1j5sd63fc04pya08spxj2plp2whidy1x7r29zarf5xlcxdn1ji28"; depends=[Rcpp RcppArmadillo wrapr]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.5.0"; sha256="01bz41c29591ybzqn4z88ss036ai3anh9figryvmfpqcfwbszip5"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.1.11.1.1"; sha256="0rqw9rzfslld1hqwdrwpavcawgla8wwsfaidiqrv7xpgfbcv5hlf"; depends=[Rcpp RcppArmadillo]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.1.13.0.1"; sha256="1zcvdpwbdzhkrzhfzg68ppp0g9q4cm266sq8k6i7j4abz0n895wi"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; RcppGSL = derive2 { name="RcppGSL"; version="0.3.6"; sha256="16pdapq31729db53agnb48jkvdm97167n3bigy5zazc3q3isis1m"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.3"; sha256="1qcnn482h9b8aw798frnkza4bzzpihp0pf4s1mj6zmn2ar01hsl0"; depends=[Rcpp]; }; RcppGreedySetCover = derive2 { name="RcppGreedySetCover"; version="0.1.0"; sha256="1v84i9gsmvpkmgd4niqnzp58nhrgn2j4rggsrnlh391ikdfrl51x"; depends=[BH data_table Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; - RcppHoney = derive2 { name="RcppHoney"; version="0.1.7"; sha256="1jnng6271i2a564y115mr2bq324xffcjpq0ysy8yar2cgljxgspr"; depends=[Rcpp]; }; + RcppHNSW = derive2 { name="RcppHNSW"; version="0.1.0"; sha256="158a069n42pbnjrlmvqsr6bm2cfp9hxpnk3nhp3dwi9qjlq4r9bm"; depends=[Rcpp]; }; RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-6"; sha256="0vjx6azp3sny6nv5k1cs6vk61hmbllqw8mgvi7zn15p7ilmhsyyi"; depends=[BH Rcpp RcppArmadillo]; }; RcppMeCab = derive2 { name="RcppMeCab"; version="0.0.1.2"; sha256="0varavfbrqzma176rw0dr9v5chh7pxh5y9g0rs3v7hqnlghp22y2"; depends=[BH Rcpp RcppParallel]; }; RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.3"; sha256="0ffdw5ckkax8j87q0ykjhyp45l7gvxjppdi73kc4r5qxvijll2g3"; depends=[BH Rcpp]; }; @@ -3409,17 +3408,18 @@ in with self; { RcppRedis = derive2 { name="RcppRedis"; version="0.1.9"; sha256="08c2c5d3rn3z89yhlymbr8w145y85hlz1bq3g6kz0kwkjfnkbs1x"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.1"; sha256="0k2k1pj05i6hf7gpar3r4mbv9cs04bd4v657saq9vhy30300vg49"; depends=[Rcpp RcppArmadillo]; }; - RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; }; + RcppStreams = derive2 { name="RcppStreams"; version="0.1.2"; sha256="0v1lx21k3snd7smixp61nymnf8d0p54n1x10vv79nr1v8x28wxhh"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.5"; sha256="0d3rdrm0kl8kw98xlw13wpb0yx24hvin3yaq6i319gfkfz30pqzp"; depends=[Rcpp]; }; RcppThread = derive2 { name="RcppThread"; version="0.5.3"; sha256="1ndidhzzwxcg01kl867a1mm64zgxf4hiaf858zr7dfkr3gzdd3lp"; depends=[]; }; - RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.0"; sha256="0833j7hy7dpdxkj1m5cfyxzpp7j0n7mxjc5kx32mdn5s43iaf7yh"; depends=[Rcpp]; }; + RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.1"; sha256="0jh64c46gp99d2nsih14vx34pamc8i7gkmiy2nj94rx3sxq62yh5"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.5"; sha256="0zmr3nvm5j0fpwxk3x9kxpwqbr66ldfvd10zy8xlgjbslz9myvfv"; depends=[Rcpp RcppGSL]; }; Rcrawler = derive2 { name="Rcrawler"; version="0.1.9-1"; sha256="1m6b1h72h8qjqcg3lzw6im6lpnkxhjg65g9fdjjqay6vy52ynznj"; depends=[callr data_table doParallel foreach httr jsonlite selectr webdriver xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; Rcsdp = derive2 { name="Rcsdp"; version="0.1.55"; sha256="1sskjf2vv5alnwirz676d8yphzk2a69wkghhkpxb8my1rjlfdgaw"; depends=[]; }; Rcssplot = derive2 { name="Rcssplot"; version="0.3.0"; sha256="1qwrwzyqbwwwjf2zx6712q6wj629vf9rjrgscf0fim10fa6k5grn"; depends=[]; }; + Rd = derive2 { name="Rd"; version="0.1.0"; sha256="04y81d68f6i8bnirs90zs6lvbdq1k6livfpavwv6163w99ggrpjj"; depends=[assertthat pkgcond postlogic purrr rlang]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.2"; sha256="07j1nnsk5nyl8kvgvh9f684g6bhc01jiq1fcmq2pnpx57jdzfbpi"; depends=[knitr]; }; Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.7"; sha256="0rfhhqibgxapbc9jrv08fnm3p5fqkhj7s9yj7kbcck0lygy1kpx4"; depends=[formatR roxygen2]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; @@ -3437,13 +3437,14 @@ in with self; { ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; RealVAMS = derive2 { name="RealVAMS"; version="0.4-1"; sha256="13x8yryl5vp3rn6n2hd14ng6cgr3bxkps4y1vanimbwv4faa8116"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; - RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-10"; sha256="09xp0ad7v2bsg1r7gf3awdqcpds0v3ygsbnkm8ysy8w14sbrrydf"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; + RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-10.1"; sha256="14h1nwdc95l24m2pklbigq0d4r5jp82x1iwndcm4w4jkx61iy04c"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; - RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.1.2"; sha256="0qbgamqkwh31ybk6a0jrd2r7jfvzprm6s90fiwpld8rzimgnh4f9"; depends=[dplyr igraph magrittr RJSONIO rlang visNetwork]; }; + RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.1.5"; sha256="1b6pp1vdn7jnyl8k828dgkxrx8sy2wyhkrn4rnfavqw4qvhm0mhm"; depends=[dplyr igraph magrittr RJSONIO rlang visNetwork]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; }; RefManageR = derive2 { name="RefManageR"; version="1.2.0"; sha256="09l17mj9m4v1hhc71smqbk566axycwb0f5np2z11y4waqf09dwkc"; depends=[bibtex httr jsonlite lubridate plyr stringr xml2]; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; + RegSDC = derive2 { name="RegSDC"; version="0.2.0"; sha256="0yffw4k615kgg3qqlvbcc100i6yfv8zcfscgd46nyr75p4yfv1rv"; depends=[ffmanova]; }; RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.2"; sha256="1g23paq42xiiqavikbrflwmr8ikls9z97v1xpgg16pb88svdyayc"; depends=[]; }; RegularizedSCA = derive2 { name="RegularizedSCA"; version="0.5.4"; sha256="1nw6hd9y2n1h3j1fqqkymz13xizv5xrsj93w702kkvkbwyl3yall"; depends=[colorspace ggplot2 gtools lattice mice psych RGCCA]; }; ReinforcementLearning = derive2 { name="ReinforcementLearning"; version="1.0.2"; sha256="1khk3yi0ixs4lzvng9pjmyyiy86bh5bx7wdyr915p1nbhq6yl2cl"; depends=[data_table ggplot2 hash]; }; @@ -3458,9 +3459,10 @@ in with self; { ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; Replicate = derive2 { name="Replicate"; version="1.0.1"; sha256="110pvissyv3dx1wpwpngcg18mpmpml49gcmdykip55s1d3ljf791"; depends=[metafor]; }; + Repliscope = derive2 { name="Repliscope"; version="1.0.0"; sha256="0cpr0vl16gv3bgl46pnr6hw3dx1gqv35dim4jlxphvydchdcfjaf"; depends=[colourpicker ggplot2 shiny]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; - ResistorArray = derive2 { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; }; - ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-2"; sha256="08b1aa3183k1y30dwabnd6x353mdp2sn5b908cpv84bs3fdzlrdp"; depends=[MASS Matrix pbapply]; }; + ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; + ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-4"; sha256="0892p714ddx2ffxg7n81599l0qm1dhfd3vm38ivxiiii8ws4nr5v"; depends=[MASS Matrix pbapply]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; @@ -3480,15 +3482,15 @@ in with self; { Ricetl = derive2 { name="Ricetl"; version="0.2.5"; sha256="0q87cxzqkkp2bk92q3wnxxsqlkafkd37lp5pki7f87a5vcxlcrak"; depends=[devtools gWidgets gWidgetsRGtk2 plyr readr readxl stringr tidyverse writexl]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; - RiemBase = derive2 { name="RiemBase"; version="0.2.1"; sha256="1k4xijs5qpdfw8kf1a0sbhl32lnblaakywwhzidns0srd7zs38k0"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; + RiemBase = derive2 { name="RiemBase"; version="0.2.2"; sha256="00skgahbmdalb4bq1hyy8rpl81f2x4d977fi1q3qb152q4br9r2w"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; Rilostat = derive2 { name="Rilostat"; version="0.2.1"; sha256="058qz5kn7p8wn3lvw92c11cqpkz9brgf1igmawfkb0lqvj366vyd"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble xml2]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; }; RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.2"; sha256="10kgr05npq9gyhglvpzk49hsr44rgscnygkv3b0gz7f6jxqkfj9z"; depends=[MASS nloptr quadprog]; }; Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; }; + RiverLoad = derive2 { name="RiverLoad"; version="1.0"; sha256="1zwc551agy5ayc5d34f87qzz1spdpvp3pbgjnysl7h8ignbghrww"; depends=[]; }; Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; }; - Rjpstatdb = derive2 { name="Rjpstatdb"; version="0.1"; sha256="0iwgsp3mblp7bsx88wfpqn09y1xrkingfkm3z9jsi2bwrnrjc2iv"; depends=[RCurl XML]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; @@ -3505,8 +3507,8 @@ in with self; { Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; Rmixmod = derive2 { name="Rmixmod"; version="2.1.2"; sha256="06d8iwnjd9n4rfmcsnqzhi5ai0rxlc1qwij5s7ixkncq8c402a2k"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; - Rmosek = derive2 { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix]; }; - Rmpfr = derive2 { name="Rmpfr"; version="0.7-1"; sha256="0172px5ryi7i0gyyin9z2bzif8vnj292gk0s1w5p3c12g9hj2c4v"; depends=[gmp]; }; + Rmosek = derive2 { name="Rmosek"; version="1.3.1"; sha256="08zyadcpi6lmrdxyh37li25rfvn9snyly4iri0f07x948yxwlzar"; depends=[]; }; + Rmpfr = derive2 { name="Rmpfr"; version="0.7-2"; sha256="1zq3as34r27v2yc729731997wdhxb6cs5ilmak4nmsljabnac7gc"; depends=[gmp]; }; Rmpi = derive2 { name="Rmpi"; version="0.6-9"; sha256="1rhycla98hxgnnxlxxldr1x51djak7c2jjvlrv3jcsvgwp1ymqdj"; depends=[]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; RndTexExams = derive2 { name="RndTexExams"; version="1.5"; sha256="17azzxcawqqvfdbw1i34n03bj5yla8npyi7xh3pnx22xb7sbwq3x"; depends=[data_table stringi stringr]; }; @@ -3522,6 +3524,7 @@ in with self; { RobPer = derive2 { name="RobPer"; version="1.2.2"; sha256="0631qfpz61606r50vzn7b3h7arfwxcs8j13q1hg779qx60kwrliy"; depends=[BB quantreg rgenoud robustbase]; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive2 { name="RobRex"; version="1.1.0"; sha256="0nszr0dnk8v7raa8sk9zcs4a5xwjv7qzhzsryach777nr9vcdafh"; depends=[distr RandVar RobAStBase ROptRegTS]; }; + RobinHood = derive2 { name="RobinHood"; version="1.0.1"; sha256="15ps0sl36sn8xf1s9rinn6idrhzrv63mrpqbs7x5gr8k1cbfanbk"; depends=[curl jsonlite lubridate magrittr profvis]; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-3"; sha256="0x7sn2y9s6nwzlj8476irv893crwag6v4k7w3w589k33kkz5n2hp"; depends=[robustbase survival]; }; RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.1"; sha256="0wsnvryvrl37acljrda2dm1d8aynqiy66yd2i857m035whixfpqa"; depends=[Rcpp RcppEigen RobustGaSP]; }; @@ -3539,8 +3542,7 @@ in with self; { RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; - Rpoet = derive2 { name="Rpoet"; version="1.0.1"; sha256="1a1km5fbzvqwjgky0n31gpafi75s6afyqn0ivh15ikq40a3adir5"; depends=[httr jsonlite stringr]; }; - Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.3.0"; sha256="1gpa3axbms7q1160xizkzsdj3kfyg3h28vz9vaac5hhwa7jzjir3"; depends=[digest futile_logger git2r R6 rgl stringr testthat XML]; }; + Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.4.0"; sha256="06kgw5h8yb0jfq4mi4p5vwc4qjj12k8anc60rblywavkxv1ycf88"; depends=[digest futile_logger git2r R6 rgl stringr testthat XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.0"; sha256="1s0jkq83vfc9jsggnwm31r366b10n6sri2vzpwxybzpjq3d3w5qr"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; @@ -3554,7 +3556,7 @@ in with self; { RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; Rsmlx = derive2 { name="Rsmlx"; version="1.1.0"; sha256="1ljw8xnzr9asv1vxim86prm8wana6gy72388f273hv36vpr2h3w5"; depends=[ggplot2 gridExtra MASS RJSONIO]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; - Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.5.2"; sha256="11lnln0ll8yhq9v6s4snqyx97kb8ngg8r76p17217znb0f62zni0"; depends=[kohonen Rcpp]; }; + Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.5.3"; sha256="1l1kvr92n0pd6rkr663701lpz81mf0i4hpf80ssd27773m6yw0kg"; depends=[kohonen Rcpp]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; Rssa = derive2 { name="Rssa"; version="1.0"; sha256="0alh0vq3qqzrn1kklqfp52qknasfq6yzk2dprz3g9pyq05qhmhlw"; depends=[forecast lattice svd]; }; @@ -3577,13 +3579,13 @@ in with self; { Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; Rwave = derive2 { name="Rwave"; version="2.4-8"; sha256="1rmqwyj2r84sii0vfqhyhpi3n1n1zia2ca627fq9ksvwn110nrvh"; depends=[]; }; Rwhois = derive2 { name="Rwhois"; version="1.0.3"; sha256="06mx98wi6r265ykkk81hk17yjkym6ar7c2cwp962ijfk3lxwc9l4"; depends=[stringr]; }; - Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; }; + Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; }; RxODE = derive2 { name="RxODE"; version="0.8.0-9"; sha256="0km96arcyzzwv88fhvqaccmrsmll790k9rjqvnrqwsmmar86kn2z"; depends=[brew cli crayon digest dparser inline magrittr Matrix memoise mvnfast n1qn1 PreciseSums R_utils Rcpp RcppArmadillo rex]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="0.3-4"; sha256="05y7q6d69nmkgwy1ycw0kqv7hmif5yqsrly3p3psrfsbfvvjl3fj"; depends=[Rcpp xml2]; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; }; - SACCR = derive2 { name="SACCR"; version="2.1"; sha256="184mw9q25b06zar4ii3na7c4x28ly922d5csfqkw9b07mdp81k3h"; depends=[data_tree jsonlite Trading]; }; + SACCR = derive2 { name="SACCR"; version="2.3"; sha256="0q5fpzmfj08mzxbxksi5fgkfw8n4zsmh37zqnbwkz30llh620hgv"; depends=[data_tree jsonlite Trading]; }; SACOBRA = derive2 { name="SACOBRA"; version="0.7"; sha256="12aj4ghs3i3ks749z0l95ipv8gi33xgggkyjf21zvnzmb1dgphys"; depends=[testit]; }; SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SADISA = derive2 { name="SADISA"; version="1.0"; sha256="0v68k6pwcr2hfsffkcrvpgfwciwir2jsg3q1kvr0ka5iiizpliz3"; depends=[DDD pracma subplex]; }; @@ -3596,6 +3598,7 @@ in with self; { SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; SAPP = derive2 { name="SAPP"; version="1.0.7"; sha256="0rms9kq87dypdfs248m4393lgpfx37qah0n1s109pfnjh3k64pm3"; depends=[]; }; + SAR = derive2 { name="SAR"; version="1.0.0"; sha256="136kb7disriqg7ar9qilcdy3pin2h2harp2mjs7qalcpgkhg4xmy"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.0.8"; sha256="04j93a61a7qg6vxv0l1p2574d2r9211mxswp5a677vavmgsrfhri"; depends=[car igraph]; }; SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.8"; sha256="1hz5a2zjv8hrasjck981sqahq0l88b6ard1iwsfqznalva8zywbb"; depends=[]; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; @@ -3609,7 +3612,7 @@ in with self; { SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; - SCAT = derive2 { name="SCAT"; version="0.3.0"; sha256="1zgf4lwzgs0w3ynf6grs212mmmxihqz8cpwk65g08nna5mxzxq06"; depends=[]; }; + SCAT = derive2 { name="SCAT"; version="0.5.0"; sha256="16dh4l5r8b49n68s571npmk14dnnx6y0np7lzvalg61z31zlya29"; depends=[]; }; SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.2.2"; sha256="045498q71zqgcg8p3665vwd99a8ybf21y0sa7y8316zw66wb1caz"; depends=[boot KernSmooth]; }; SCCS = derive2 { name="SCCS"; version="1.0"; sha256="0v1ycyx45jlv4y82q0kpcmmfcaaspmkk9nd89k6cfh24n6zf9j6w"; depends=[corpcor dummies fda gnm R_methodsS3 survival]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-1"; sha256="19sphwcsj2z05dvpmz7vgxykzyghkfn79jwqvk6d66daman679mv"; depends=[MASS]; }; @@ -3625,7 +3628,7 @@ in with self; { SCRT = derive2 { name="SCRT"; version="1.2.2"; sha256="1x6bzcgb5blavj4zdw4jam5r8yad3plyfzk31vz9pjv39784k229"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.2.1"; sha256="1ixy4ybw3c9w6q8csjv27r5f9x6988zrbr2a3yybhyw8xmkszc4v"; depends=[]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; - SDALGCP = derive2 { name="SDALGCP"; version="0.1.0"; sha256="1ll39ws3hlz07v180g8k55z7ziyrqghndpvd0wp0pc85mw5i6f8s"; depends=[maptools Matrix pbapply pdist plyr PrevMap progress raster sp spatstat splancs]; }; + SDALGCP = derive2 { name="SDALGCP"; version="0.2.0"; sha256="04yqa0dlr4p6fpc4dsiqwb02j056fz9j8qwf7939b5hpg8k9qwjg"; depends=[geoR maptools mapview Matrix pdist plyr PrevMap progress raster sp spacetime spatstat splancs]; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.1.0"; sha256="1pknkda7iaq5247557b93kc3cf2ih7b3wpqpkqyfgfay3ci9kg16"; depends=[]; }; @@ -3652,17 +3655,17 @@ in with self; { SGCS = derive2 { name="SGCS"; version="2.6"; sha256="09czgfc0mg64qcigp36kjaf52zlmrpz3m2d1dp42d9hhlciliqf5"; depends=[spatstat]; }; SGL = derive2 { name="SGL"; version="1.2"; sha256="13lpziwkxw2qj4496lvh76d59nfnmrd371jbgz78dhy8dpzyd7c3"; depends=[]; }; SGP = derive2 { name="SGP"; version="1.8-0.0"; sha256="02yh6kvc34gn33cbnhc5b86pmir1zbl6s875hangwb3qx7r13dx0"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames RSQLite sn toOrdinal]; }; - SGPdata = derive2 { name="SGPdata"; version="20.0-0.0"; sha256="0fxv7nnxiaq6z9wii9x5qiy0vd2z8jw3gcwl5fj9m29ja7j3900g"; depends=[crayon data_table]; }; + SGPdata = derive2 { name="SGPdata"; version="21.0-0.0"; sha256="0yi5744nd5m255rrysp1a05darg5ac7vrjk3wyfp45cvp45gcjcb"; depends=[crayon data_table]; }; SHELF = derive2 { name="SHELF"; version="1.4.0"; sha256="1lc8f19dvnpv1mg32q3vrg96pwcsapkb30fqis6q58v434v42x89"; depends=[ggExtra ggplot2 gridExtra MASS rmarkdown scales shiny tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; - SIBER = derive2 { name="SIBER"; version="2.1.3"; sha256="14ab9zid0i400kj924m2y5qgp2iibnpllhqw11rlmdf8j9cr7858"; depends=[dplyr ggplot2 hdrcde magrittr mnormt rjags spatstat_utils tidyr viridis]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; }; SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.13"; sha256="10759nx2x3gy6zacn37fpr2dgx8j8ap8ic4infljfk0048f9in8w"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SIGN = derive2 { name="SIGN"; version="0.1.0"; sha256="1ak4zv5a50iknrxpfw1iffn8gv8mc0rz2gk96nzky9zx6li5drhk"; depends=[GSVA survcomp survival]; }; SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; + SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMMS = derive2 { name="SIMMS"; version="1.1.1"; sha256="1wgqz8zgijv5psz5r5zj9k63ikq5sr1dxqxvh48n2041slj6jdap"; depends=[doParallel foreach glmnet MASS survival xtable]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; SIRE = derive2 { name="SIRE"; version="1.0.2"; sha256="1y313wmbpp7yiqg6sc280s97z1xp5zlpiddx42zwzwanikxscikx"; depends=[igraph MASS Matrix matrixcalc numDeriv psych stringr systemfit]; }; @@ -3683,11 +3686,12 @@ in with self; { SMCRM = derive2 { name="SMCRM"; version="0.0-3"; sha256="1x06w00sdijhg5h1s61q4ym5wgk97pw9md6api7if2cxjv7h5zcy"; depends=[]; }; SMFI5 = derive2 { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; SMFilter = derive2 { name="SMFilter"; version="1.0.3"; sha256="1islyqg9w08mvs2kf0ddmdlp885arzp0jy7mqvixjm4ayi5zfrri"; depends=[]; }; + SMITIDstruct = derive2 { name="SMITIDstruct"; version="0.0.3"; sha256="1n3yrcxi5w0gjyrnnmfbhz1az0msc9pldsdx2bvfr934nz6lxhkz"; depends=[Biostrings ggplot2 sf]; }; SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; SMM = derive2 { name="SMM"; version="1.0.1"; sha256="0g2blwcir0sxvqrivcyn9a8ssx34834lgcwrjwb6kcrq224dchws"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.2"; sha256="13psgrpljnaxpcq4amiyg5mqhpzmb2hyb7jzh3h8wyq18rvs3s4d"; depends=[Rcpp RcppArmadillo]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; - SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; + SMPracticals = derive2 { name="SMPracticals"; version="1.4-3"; sha256="0zxq84f9i3b86xx6msb25b61gyj9k09iab2b7wg4d93yas9qzayf"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; SMUT = derive2 { name="SMUT"; version="1.0"; sha256="1dsmj0h969q9q6qjamr73yfjxbq7hfjmcawra3lynangnc78y1l7"; depends=[MASS Rcpp RcppEigen SKAT]; }; SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; @@ -3715,7 +3719,7 @@ in with self; { SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPCAvRP = derive2 { name="SPCAvRP"; version="0.3"; sha256="1j4469ny70xsyaf9qa403yg0n63c1as6mkw7a6ql4h7aa53bz5sz"; depends=[MASS]; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; - SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.7"; sha256="1ifbpbvmrwc9jn2sxhnbffxn6hn21is6ipm1zr1qawnxp3jsdcbr"; depends=[]; }; + SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.8"; sha256="09kdky1v5vx1xjdlb27228hijfb2g70nxsddj950gdp9sllxkncz"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; @@ -3734,13 +3738,13 @@ in with self; { SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; - SQRL = derive2 { name="SQRL"; version="0.5.0"; sha256="19mfr45csr23nw7w3li1iyb6hyf94a7w3xlm1rp8dx2ad0vdhzy2"; depends=[RODBC]; }; + SQRL = derive2 { name="SQRL"; version="0.6.1"; sha256="1jyyxw775386abl3818i37l1ly7zkgaxxxlqfcm7a0mg7wvzlmzk"; depends=[RODBC]; }; SQUAREM = derive2 { name="SQUAREM"; version="2017.10-1"; sha256="10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; - SSBtools = derive2 { name="SSBtools"; version="0.3.0"; sha256="14vs51cq34n2i7gwzs4yr53azhl8c1my293q6x7brvy6pflyj9w6"; depends=[Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="0.4.0"; sha256="0rmvqhhw5zv8za3h8m59sqz0857hryn6c1bpsl4bdnyjzjfqa675"; depends=[Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.4"; sha256="1zn0iaav58pjzd6ckm28w16pblkjxacj2s1daj0sk0423dhjkf76"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard shinyFiles sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.4.21"; sha256="1k73wy1krs4ngh639ajshi1pap13gl7xcwwi2fa0zzng1kyfwp1v"; depends=[MAd MASS metafor psych TSA TTR]; }; + SSDforR = derive2 { name="SSDforR"; version="1.5"; sha256="08zfq6gm39didq893scz6js4pl42c15k9q08s1n7naqyzpgj09fq"; depends=[MAd MASS metafor psych TSA TTR]; }; SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; }; SSLASSO = derive2 { name="SSLASSO"; version="1.2-1"; sha256="0x9nbq9lsnq9g47y50z2ymfbj09l2d1lbii2cfjm76nzk3k5lb39"; depends=[]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; @@ -3757,13 +3761,12 @@ in with self; { STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; STMedianPolish = derive2 { name="STMedianPolish"; version="0.2"; sha256="0jzgcfhm09cccg2nwbvrmnkah1psbnmg26rc2n7lz26n4b20p3l2"; depends=[gstat maptools nabor reshape2 sp spacetime zoo]; }; - STMotif = derive2 { name="STMotif"; version="1.0.1"; sha256="008sgz4fd6cc38v0063s2i8vh93ghk43kg966pxxmpg4wjh4wvrc"; depends=[ggplot2 RColorBrewer reshape2 scales shiny]; }; STPGA = derive2 { name="STPGA"; version="5.2.1"; sha256="0mwjv9r7x925ljmbwk2fl0xvf2n2hnf5n5z5p5rxr57ywvirqw1b"; depends=[AlgDesign emoa scales scatterplot3d]; }; STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.0"; sha256="034d9qnvgmk97ah7r9w2hvnw39f7mxs2ml6y8dad94p8phl52gfw"; depends=[]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; - SUMMER = derive2 { name="SUMMER"; version="0.2.1"; sha256="11qm0spisx8f733d7gjyq8r82zvpv7mjpzxz5xfigyhyzrds18d2"; depends=[ggplot2 maptools Matrix reshape2 spdep survey survival]; }; - SVMMaj = derive2 { name="SVMMaj"; version="0.2-8"; sha256="13d9v1l85md1v6qyfrdc3l36yanw5canskngjr1sh0hmyla182bz"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; + SUMMER = derive2 { name="SUMMER"; version="0.2.2"; sha256="01azh8lm706l9sl0wqxghs29j1d183zi3m5v5fh4a2f8y8na43iq"; depends=[ggplot2 maptools Matrix reshape2 spdep survey survival]; }; + SVMMaj = derive2 { name="SVMMaj"; version="0.2.9"; sha256="1405gigyjfp8by8nfx4g3rhw9x6r6g7dkpgw52jllv6n4036xa3h"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SWATmodel = derive2 { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; }; SWMPr = derive2 { name="SWMPr"; version="2.3.0"; sha256="1z6gg8ih1m5nxm1kilpwxj4xvlbyqr67la7idrfa722y6f6264rf"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; @@ -3805,8 +3808,8 @@ in with self; { Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; SemNetCleaner = derive2 { name="SemNetCleaner"; version="0.9.9"; sha256="1pbp1h3kqgrdwr28psbrnd8i67rbff8hyldry46511zjmc8c7zaq"; depends=[qdap]; }; - Semblance = derive2 { name="Semblance"; version="0.1.0"; sha256="11mpqfpv7i5nqyn9s63bfphj35sh4gx4hjy0gc22sfqn0lmvl132"; depends=[fields]; }; - SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.1"; sha256="0m0primbkpjw4pmmabdgvp5l21aqfifnryga1rp2ng9cm5ncxxqg"; depends=[Formula MASS survival]; }; + Semblance = derive2 { name="Semblance"; version="1.1.0"; sha256="1kzrg5z3244nx9y37p092wpangni3fxpx04i5fb4dhrmav4rvgab"; depends=[DescTools fields msos PerformanceAnalytics]; }; + SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.3"; sha256="06anhf0kqaz4i84g73w3l4gf0q2mwi00vlkciqfbxpwgrbacplf6"; depends=[Formula MASS survival]; }; SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.5"; sha256="18ma6098zng3ckf082qhjl837g8ppn3gli8l8nfnxirg5ra8zflp"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; }; SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.5"; sha256="0apbg8sddz2ab9170wvf7p6cgawvp4w13r97r5q7p3hx2hylb8sw"; depends=[CDVine copula gamlss_dist magic Matrix matrixStats mgcv mvtnorm trust VGAM]; }; @@ -3814,14 +3817,14 @@ in with self; { SensMixed = derive2 { name="SensMixed"; version="2.1-0"; sha256="0ykg94amnm9clf8d3naap8fmv9qqc6j1q52wnb83zk7ry44dp7dh"; depends=[doBy ggplot2 Hmisc lme4 MASS plyr reshape2 shiny shinyBS xtable]; }; SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; SensoMineR = derive2 { name="SensoMineR"; version="1.23"; sha256="0a1s2wrb86a0y2faxj5ax8fa6vfcclgg7bcff4j7jb40ilxnxhn4"; depends=[AlgDesign cluster FactoMineR ggplot2 gtools KernSmooth reshape2]; }; - SensusR = derive2 { name="SensusR"; version="2.3.0"; sha256="1gzww80p11zqs90psfx3yl7ncdkq3l55bcs4dxzikrnf5maqa193"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; + SensusR = derive2 { name="SensusR"; version="2.3.1"; sha256="1x1a8vnpn6h7905wa4lvf7vibkl2dsa4yyg2sg4bbi719lcki2q0"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; SentimentAnalysis = derive2 { name="SentimentAnalysis"; version="1.3-2"; sha256="18vycj9vpb32610sn321sbwdnjldyjm9idjw9spggdzj7gsiwwk3"; depends=[ggplot2 glmnet mgcv moments ngramrr qdapDictionaries SnowballC spikeslab stringdist tm XML]; }; SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; }; SeqFeatR = derive2 { name="SeqFeatR"; version="0.3"; sha256="1pj8pr2jfr7rvbnjgryg733201ixbbddmy3ljls44jbbizcrg271"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; }; SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; SeqKat = derive2 { name="SeqKat"; version="0.0.6"; sha256="0idxyn84rqsg26y6ml218g037qxrx9755ikasyn212qacc36in39"; depends=[doParallel foreach Rcpp]; }; SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; - Sequential = derive2 { name="Sequential"; version="2.3.2"; sha256="01zvgvdj57js08krskahk1ng3wkv9iblmirslgrmllf4q18zwsdr"; depends=[]; }; + Sequential = derive2 { name="Sequential"; version="3.0"; sha256="06cyhigkk868pswllsa5jxm78pl9c92n0q9ks12x0dq0p95w53hh"; depends=[boot]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; SetMethods = derive2 { name="SetMethods"; version="2.4"; sha256="06fcin03mvqbg4mk09ygn54li0wdyp57mv902c49zs9v4y8r88cs"; depends=[betareg fmsb ggplot2 ggrepel lattice QCA scatterplot3d]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; @@ -3849,7 +3852,7 @@ in with self; { SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.6.0"; sha256="0x0wcc3nqw57xs7jiwc8bzmcwnb69dvpfp7anhx6bx607rcbxfpi"; depends=[evd]; }; SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; - SimDesign = derive2 { name="SimDesign"; version="1.11"; sha256="0ifn5ma8rh42d75cx2qmv6fbqrw8f6h7kaa1l04648xnplcx7bcz"; depends=[foreach pbapply plyr]; }; + SimDesign = derive2 { name="SimDesign"; version="1.13"; sha256="17miwaa668hs6n6y3ljgd8iqxywxx3pv1g0lsq6wbyp0w8m3mgcn"; depends=[foreach pbapply plyr]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; SimInf = derive2 { name="SimInf"; version="6.2.0"; sha256="11pmkjc56n1k2m1p6fyzv403h1wd557yhk9ymhg7vdc7jibpzplf"; depends=[Matrix]; }; @@ -3871,7 +3874,7 @@ in with self; { Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SimuChemPC = derive2 { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; - SingleCaseES = derive2 { name="SingleCaseES"; version="0.4.0"; sha256="0n2wybp06jx36095aw6073rdr2x1ahrnar28sqla2l2jd28ml72x"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; + SingleCaseES = derive2 { name="SingleCaseES"; version="0.4.1"; sha256="129hk4hk2zz7vmhb6w9xxw9gxwc4958lcm2kx5l3bhmrbn3lz0yi"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; SitesInterest = derive2 { name="SitesInterest"; version="1.0"; sha256="06l6i6jnzwj683cvd9a9dg4nlb1wy1v3wb561y97a25bikm3mfy6"; depends=[plotrix]; }; SixSigma = derive2 { name="SixSigma"; version="0.9-52"; sha256="07s4an2az2pgqhq9c08jrf6b95nrs1b3r1092d53n1ps8wbdmbln"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; @@ -3879,8 +3882,8 @@ in with self; { Skillings_Mack = derive2 { name="Skillings.Mack"; version="1.10"; sha256="0zxqiw87avw2rb2acj7mvpyfkf7iwnkshg73ib74y5ml9awmg2mw"; depends=[MASS matrixcalc]; }; Sky = derive2 { name="Sky"; version="1.0"; sha256="02vjdggvanzsjx7ihxskapp5d5dlyalj02122wmarj8qf1ha1i2m"; depends=[EBImage]; }; SkyWatchr = derive2 { name="SkyWatchr"; version="0.8-2"; sha256="0if44d79j2hlxdccn3jd7lrfbhrr09rfhfgds132syxprwkcb2mr"; depends=[htmlTable httr sp]; }; - Sleuth2 = derive2 { name="Sleuth2"; version="2.0-4"; sha256="18mh1svmb96hw3rjmgxlwzs7kdcvjkxf4zm8k4w0sxz94ks062i7"; depends=[]; }; - Sleuth3 = derive2 { name="Sleuth3"; version="1.0-2"; sha256="0b4g7j8a204wyvh0q9n1l4zrl9rk7ibyfijd49mjjdyg9zz4kbna"; depends=[]; }; + Sleuth2 = derive2 { name="Sleuth2"; version="2.0-5"; sha256="18rp23dr55p2zqxqj5i86gi8j25b0y7hc2p88rxqszgmbyn5ynhi"; depends=[]; }; + Sleuth3 = derive2 { name="Sleuth3"; version="1.0-3"; sha256="0ngwri80cwqs50wjza8qyzzwign4ag1ck7fa1x7q5x08w9x6w08m"; depends=[]; }; SmallCountRounding = derive2 { name="SmallCountRounding"; version="0.2"; sha256="1xfx0cqrl7yz0a1alxk00ii2q63dawnlkg1s734sji6l6c0dvchy"; depends=[Matrix SSBtools]; }; SmartEDA = derive2 { name="SmartEDA"; version="0.3.0"; sha256="0adx637nmajmjl9j1rbdmx3gl5v6mgd2m3jdxx3wa4z12pjbrdac"; depends=[data_table GGally ggplot2 gridExtra ISLR rmarkdown sampling scales stringi]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; @@ -3892,13 +3895,13 @@ in with self; { SmoothWin = derive2 { name="SmoothWin"; version="2.0.0"; sha256="1mkmrh9f08sgvx4zvca2q09lrwvy24bcgi72bhy1dzdc4fbpg2s5"; depends=[nlme]; }; SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.7.1"; sha256="12kzjrxjrgph95m949z6ri97nn97gh6avzqibw1jn76rsnjrhi6r"; depends=[jsonlite Rcpp stringr]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; - SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; + SnowballC = derive2 { name="SnowballC"; version="0.6.0"; sha256="0b7pqdavf5jbf8si4ybnii5fff39p3b1rb5rym05j8s48hs7sqb1"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; - SoftClustering = derive2 { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; }; + SoftClustering = derive2 { name="SoftClustering"; version="1.1902.2"; sha256="1r709r96ra9knkprjw6c227r7w6wygfpwc9pwwsjyw166305pxfs"; depends=[]; }; SoilHyP = derive2 { name="SoilHyP"; version="0.1.2"; sha256="12fplk632r5pakzyjarhwa7hhqp20n7nd8bzxkknfn0p0ffr0w4j"; depends=[]; }; SoilR = derive2 { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; }; SolveRationalMatrixEquation = derive2 { name="SolveRationalMatrixEquation"; version="0.1.0"; sha256="1m0b4sb247k6mlagvs4nj42ga9p48g9736lmhar7v1c5qhi7pw3v"; depends=[]; }; @@ -3911,10 +3914,10 @@ in with self; { SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; SpNetPrep = derive2 { name="SpNetPrep"; version="1.1"; sha256="1y3j7mwjxv69lrgqvi8kxvhlmdyr8v7gbg17741008xb32kgma8h"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; - SpaDES = derive2 { name="SpaDES"; version="2.0.2"; sha256="14l6rhaid4022c9gza6iy7kb6zr1844v16kn3hlgynf3zqv0mkr4"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; - SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.1"; sha256="0sipgq00lacy7yk81crr8h7xfm4vs4h66w6rqsll8i7di19g13cj"; depends=[devtools magrittr miniUI rstudioapi shiny SpaDES_core stringi]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="0.2.3"; sha256="1dj0mjd902ll01vis947vdlwc3fn5j58yvpzipmvr7lmyk5476f5"; depends=[codetools crayon data_table DEoptim DiagrammeR dplyr fastdigest fpCompare googledrive httr igraph lubridate quickPlot R_utils raster RCurl reproducible stringi]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.0"; sha256="110c8y6v6pig6bpzn82kzaxr4c2jlq83v1a9ml1n9af591mpw4gp"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp velox]; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.3"; sha256="050sga2xm9zjrx7qg9qbcv1zrjcl2drka1whsabsdjvmg06jw7ba"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; + SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.2"; sha256="0z1n48kfwy460zfam88ayfiq8sbzvnf6cpkasr74nykr4fabs5ha"; depends=[devtools magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="0.2.4"; sha256="1pjqsnn29fl0hmdvb74vlc3lby19p42lwzc9gcjyrc25h3vmcq56"; depends=[codetools crayon data_table DEoptim DiagrammeR dplyr fastdigest fpCompare googledrive httr igraph lubridate quickPlot R_utils raster RCurl reproducible stringi]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.1"; sha256="1wv8g7q5bs2cah2snvgs9c5ahds9242ds35h8lk5aynfwnmi1k9c"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot raster Rcpp reproducible rgeos sp]; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; @@ -3939,9 +3942,9 @@ in with self; { SpatialPosition = derive2 { name="SpatialPosition"; version="1.2.0"; sha256="140fg3bjj7383nrdbgnk9lccj4yjq65rkprqpmf4q0mwbc89mmqc"; depends=[raster rgdal rgeos sp]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; SpatialVS = derive2 { name="SpatialVS"; version="1.1"; sha256="1xghfiz9wmmx11ssms7zjy3ggkjmc6kkbdwp3v5wjwpwapafzdk3"; depends=[fields MASS nlme]; }; - SpatialVx = derive2 { name="SpatialVx"; version="0.6-3"; sha256="0shh8b4l42h93ja6mshj2bwfz1g5j6wjwf3n3ql4yx7kc0n1y7sv"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; + SpatialVx = derive2 { name="SpatialVx"; version="0.6-4"; sha256="1l40di3312af0c08x22qc0p79wisbjn12pazb6f2qmjzradfw1dv"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.9"; sha256="1k674xb6q64w9izjb2mdippp6sfjnlqlq6ynmzmyi8m3pv3spga6"; depends=[MASS Matrix]; }; - Spbsampling = derive2 { name="Spbsampling"; version="1.0.0"; sha256="19ci3199hwqzh82phxr4m4d1n7y3vpn5338m20qisr7plwqv7wp5"; depends=[Rcpp Rdpack]; }; + Spbsampling = derive2 { name="Spbsampling"; version="1.1.0"; sha256="0l770x1mlxf9laxh4f9ar9fpszn92b7lc01dmdinlr4bb7lwlz20"; depends=[Rcpp RcppArmadillo Rdpack]; }; SpecDetec = derive2 { name="SpecDetec"; version="1.0.0"; sha256="1940pl4vm1kzszq0hwhqkwbk1xmrimjdf03acpdndy089mdg9avc"; depends=[abind]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.7"; sha256="1v3v717ah2fkx9225860dwppdf5m6nnnaaa4iwmj30rn17nqr4jh"; depends=[gsubfn splancs]; }; SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; @@ -3961,9 +3964,9 @@ in with self; { Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; }; StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.18.0-1"; sha256="12kfsci52j29q0ihqdf2v2mz76zj3vx4j80d0py6haxyd5f05bj6"; depends=[]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.18.1"; sha256="02cjvwa5pndrpnfynrl2ifja6kf5mj9axpiv42qja5yigjd603ff"; depends=[]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; - Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; + Stat2Data = derive2 { name="Stat2Data"; version="2.0.0"; sha256="1fpp3b4k7x915a9wkpyj4dvvqp0wz7c3lpbh154vrxrdsr712z0k"; depends=[]; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.91"; sha256="0gjxp6jz8j2kz87g17gax1pyrd498vcswrmv9az5dj52dvyxbwxf"; depends=[cairoDevice car clinfun coxme gWidgets gWidgetsRGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; }; StatDA = derive2 { name="StatDA"; version="1.7"; sha256="1hsy4aivd5ga2zj65hr2c5cn9qgjnhs123qqyg6q959vsjxzp0i0"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; @@ -3974,7 +3977,7 @@ in with self; { SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; SteinerNet = derive2 { name="SteinerNet"; version="3.0.1"; sha256="1jkvv0hsj85i1zfr1bmdsrbwgl11mxpfci3z7997m5vvb5fb5cxn"; depends=[igraph]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; - StepReg = derive2 { name="StepReg"; version="1.0.0"; sha256="1ifdns1fpsjcbwcy19h5hxnd3an53qwba2a7gpn2571zb1phraz8"; depends=[Rcpp RcppEigen]; }; + StepReg = derive2 { name="StepReg"; version="1.0.1"; sha256="086malzx06knah8bw66yjaqgfm1q1z8zr6vskr91px3fr610yjix"; depends=[Rcpp RcppEigen]; }; StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; StereoMorph = derive2 { name="StereoMorph"; version="1.6.2"; sha256="1jjvkwln9kkjgyg1vn9ma6ffi32cxbkfh6zn69vilbdkmjcsycl2"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; @@ -3992,7 +3995,6 @@ in with self; { StroupGLMM = derive2 { name="StroupGLMM"; version="0.1.0"; sha256="1w0xizdmwqflfhqwygyq7fw5ci7pdzmr8dfv3j0g3ljbj84kndzd"; depends=[aod broom car ggplot2 lme4 lmerTest lsmeans MASS mutoss nlme pbkrtest phia survey]; }; StructFDR = derive2 { name="StructFDR"; version="1.3"; sha256="1y0wj7y36iq0lznc4qpsr2yis3an34iilpabkaxxmas2q4abg0qb"; depends=[ape cluster dirmult matrixStats nlme]; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; - SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; SubTite = derive2 { name="SubTite"; version="2.0.3"; sha256="1i95f3x1nkhx9kqzxwvi15x6yq7mcdihzjxh60la6jvq5nscfi3l"; depends=[Rcpp RcppArmadillo]; }; SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; }; SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.0"; sha256="0bhrb82yck4q72r268wqcnz2cm0sss92zff580s5jjijc2cwh3cp"; depends=[alluvial circlize colorspace diagram dplyr geoR ggplot2 gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; }; @@ -4010,7 +4012,7 @@ in with self; { SuperpixelImageSegmentation = derive2 { name="SuperpixelImageSegmentation"; version="1.0.0"; sha256="1jfv0ql58kcczyy44pb51z8w7pj4kk406dnxh2lanc5c9kwj2fk2"; depends=[ClusterR OpenImageR R6 Rcpp RcppArmadillo]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.4"; sha256="1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="0.1.0"; sha256="0cw2nsqc9dx36svb49pqkmrxwk5hhbih206mwwkzfyavswxd2lpv"; depends=[gstat gtools raster rgdal rgeos sp]; }; - Surrogate = derive2 { name="Surrogate"; version="1.1"; sha256="1wmvr0wmhb0pfgn5rjq7v0zvkcy0bn01bqylbimkfrp5qlc2nf65"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms rootSolve survival]; }; + Surrogate = derive2 { name="Surrogate"; version="1.2"; sha256="1wv8j2ps9wymr4jqgvs0nz91zh2yzs1hv04kkv0yqjq8pz65w5kd"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms rootSolve survival]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.0"; sha256="0dw8ic2rskwhj9f013q0j5my7qfsqihfis93frrlz4qag68jddqn"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; @@ -4020,7 +4022,7 @@ in with self; { SurvTrunc = derive2 { name="SurvTrunc"; version="0.1.0"; sha256="0b6s7llljp75agd57lmc1yq5acnfwy113khrfjcbm1l5ply6pz7f"; depends=[survival]; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; }; SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; - SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-4"; sha256="1b0h1jfywsrfdj8dkbnlzvh7654rycagxij9jbzb65g6swss6ajx"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; + SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-5"; sha256="0nmlnvc1vxk68sc5jv3kvnnf5dpqxn4dxzrn06b9sn2bcxfpmkhy"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; }; @@ -4032,7 +4034,6 @@ in with self; { T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; TAM = derive2 { name="TAM"; version="3.0-21"; sha256="0f89ns99z284ihr33fhiqqjhrvmk29spbjspgc14gb1h1ql5k906"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; }; TANDEM = derive2 { name="TANDEM"; version="1.0.2"; sha256="1h6m6aq2b5m9gdy4nck4dxv75gv50pfdhxx8xifgyv0d7n8czabq"; depends=[glmnet Matrix]; }; - TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; TAQMNGR = derive2 { name="TAQMNGR"; version="2018.5-1"; sha256="0bf0sgqa53l9y2bhwg2ngiwlcgrmj0nvxchlsmcc8zin388qf4pb"; depends=[Rcpp]; }; TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; TAShiny = derive2 { name="TAShiny"; version="0.1.0"; sha256="1h8k8py7myrj7c18cbp4q7bmgmck64jagw9s9j1jaqzl9qf8cbgq"; depends=[dplyr igraph shiny SnowballC tm wordcloud2]; }; @@ -4057,15 +4058,15 @@ in with self; { TEQR = derive2 { name="TEQR"; version="6.0-0"; sha256="112znsz36jqh3krnr4j05xl70picih8qpmqky2gllgyr8nky39fr"; depends=[]; }; TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; }; TESS = derive2 { name="TESS"; version="2.1.0"; sha256="05xsz2v847pwj4ja7hmg3zfbfqrwwzpf0ri0gjzb8snm2a7xm23y"; depends=[ape coda deSolve Rcpp]; }; - TExPosition = derive2 { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[ExPosition prettyGraphs]; }; + TExPosition = derive2 { name="TExPosition"; version="2.6.10.1"; sha256="0psdm35g7h7d8cr3xlyq8akr0qrbl44d5pnsaf535cs5pmqdp87b"; depends=[ExPosition prettyGraphs]; }; TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.8"; sha256="0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"; depends=[Rcpp]; }; TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; }; TGS = derive2 { name="TGS"; version="1.0.0"; sha256="0x3a8c02zibqh57sr79gk792m6dsxgzmqpk73lflvg1l2s3r6zf8"; depends=[bnstruct doParallel foreach ggm minet rjson]; }; - TH_data = derive2 { name="TH.data"; version="1.0-9"; sha256="03xfvww0krw0fn76qmmvrj7dx4shin57qafwhkrggfg25hbqlcfq"; depends=[MASS survival]; }; - TIMP = derive2 { name="TIMP"; version="1.13.0"; sha256="0b6g2afwjz2m7bnfhx1pjmq6x1ghjxgrwi6hz1l867qa4i2yx5hx"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; + TH_data = derive2 { name="TH.data"; version="1.0-10"; sha256="0mgz7aj2d9abbmdr65zgmg1ddp3fdbs3mfj83r5xadh5ldkir2k1"; depends=[MASS survival]; }; + TIMP = derive2 { name="TIMP"; version="1.13.1"; sha256="1qnc2qmq204wzvsxdjh6q7n9g7vx20lqb8jsw6zi9v5bx1saw152"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.1"; sha256="0cxcgkf776411ln5wbfdyjxa42jw473vcq1kns6k6p8dpm1y91c2"; depends=[]; }; - TInPosition = derive2 { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; + TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; TKF = derive2 { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.4.1"; sha256="1miw28mv425i8q5zrdd5xf23glbzlrmgldkmv3w2x35lkh9a1ini"; depends=[ggplot2 hypergeo Rcpp]; }; @@ -4078,9 +4079,9 @@ in with self; { TP_idm = derive2 { name="TP.idm"; version="1.5"; sha256="07rxn0mpar3p6blg8fd3kbvdngyz9h9n0r0lcljnfdajfzbysv7h"; depends=[]; }; TPD = derive2 { name="TPD"; version="1.0.0"; sha256="1fwj5l519mwsffm2pw2nbpm1mnlxkxzl53i7sqy810fccw47hgag"; depends=[ggplot2 gridExtra ks mvtnorm]; }; TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; + TPES = derive2 { name="TPES"; version="1.0.0"; sha256="00g1limcappjrly93x7xb1llrgaxivmiky3kw40w2fs0303ha3d7"; depends=[]; }; TPMplt = derive2 { name="TPMplt"; version="0.1.2"; sha256="1sq72b0n0bskd488z2cag6hz9p48xgkwvp43hfc2gzs5x6ca7pmn"; depends=[directlabels e1071 ggplot2 RColorBrewer rgl rowr VBTree]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; }; - TR8 = derive2 { name="TR8"; version="0.9.19"; sha256="1vqjjhyx7igrkdmxbgypds6qq7al6hznv4s5mhspg833mzjhz92c"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; TRAMPR = derive2 { name="TRAMPR"; version="1.0-8"; sha256="0nxp8wdr7yx94fk14m0r4dh2jxcvjqp6lg02092zww5y7jlbf4ds"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; @@ -4091,7 +4092,7 @@ in with self; { TSCS = derive2 { name="TSCS"; version="0.1.1"; sha256="0dllaw69rl26hgqac5q66k13gfmnxhn3wf0j8nx5xvi7yclzc3ay"; depends=[ggplot2 rgl tseries]; }; TSDT = derive2 { name="TSDT"; version="1.0.0"; sha256="0cscy8g6qab09lgzdpz9s85l7m7v5gnjf0n3h82730xzd50r4za7"; depends=[hash mlbench modeltools party rpart survival survRM2]; }; TSEntropies = derive2 { name="TSEntropies"; version="0.9"; sha256="1bwb3kyhzc6sxhvpagf4vjmh8ghx44lpc9ms4jwrsrzdhcvnfc7l"; depends=[]; }; - TSEtools = derive2 { name="TSEtools"; version="0.1.1"; sha256="1s39j41s5d9zakvr536l7m9f72yjh3cbfpd6pijvcr3n3dznmra9"; depends=[xts]; }; + TSEtools = derive2 { name="TSEtools"; version="0.1.2"; sha256="0nag6gjcrv90qljiz8jp266v3p5mq905jq8wss9nvcyxph6fgs1d"; depends=[quantmod xts]; }; TSF = derive2 { name="TSF"; version="0.1.1"; sha256="0v3pq64yknp3n6lw6c87slv1avsv7rlb82gm670q4jzv5d174phv"; depends=[forecast fracdiff]; }; TSGSIS = derive2 { name="TSGSIS"; version="0.1"; sha256="0zrlin6xi6sv5qb18a0wi8lzldqlwa9lbwnra44w3jza3kakff7n"; depends=[glmnet MASS]; }; TSHRC = derive2 { name="TSHRC"; version="0.1-5"; sha256="05vv2zdkzlg04dicwa0lyww92fiafr7bnvsbm6990xkip1lf3cih"; depends=[]; }; @@ -4106,7 +4107,7 @@ in with self; { TSSQLite = derive2 { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; - TSVC = derive2 { name="TSVC"; version="1.0.0"; sha256="1v2402shrsdighnhrphvqnsnwq0y4rpx7hg4bxpzqhcma5a3z1r2"; depends=[plotrix]; }; + TSVC = derive2 { name="TSVC"; version="1.2.0"; sha256="0w7987p8j7waaqcx6wx9wvxypbf0r5nn34fwlg3z7gwn4fkl3pwc"; depends=[mgcv plotrix]; }; TSclust = derive2 { name="TSclust"; version="1.2.4"; sha256="0dh6bybr5298cjz9fxfz7wbkp7f45d3r2zl9fb0wgngb6bd0cwfl"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc wmtsa]; }; TScompare = derive2 { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[DBI tfplot tframe TSdbi]; }; TSdata = derive2 { name="TSdata"; version="2016.8-1"; sha256="199dy4phc6z0kzbp4kks55519c3xgsx4dkwrypr9sg8xhprrwnib"; depends=[]; }; @@ -4129,7 +4130,7 @@ in with self; { TVsMiss = derive2 { name="TVsMiss"; version="0.1.1"; sha256="1lvswq3syp2mfcf0higmyg5k5qhg1q6jaz8g75az3xajn4jylm0k"; depends=[glmnet Rcpp]; }; Table1Heatmap = derive2 { name="Table1Heatmap"; version="1.1"; sha256="1nrabjivfsdhaqmlq365pskkrp99jqsxn8vy03mdnqn5h5zv7wvx"; depends=[colorRamps]; }; TableMonster = derive2 { name="TableMonster"; version="1.7"; sha256="1xa4bkcpzhm50dwbpya346swjjfw46n2x26xm30p8gppilg5c0lb"; depends=[xtable]; }; - TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.1"; sha256="135q0bgsm2yndrg3vpwmihbqlyf3qkm97i0jvcw6bf06p6b2fk41"; depends=[]; }; + TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.2"; sha256="034vca0il7006zdkh5vdfjddyq9lg5mkl8hjria2rpks6wx0jhrd"; depends=[]; }; TailRank = derive2 { name="TailRank"; version="3.2.1"; sha256="142m0cq9j8y5g9wh4plxya1jqi0dv6p6praxx3jb84kwqspi91xr"; depends=[Biobase oompaBase oompaData]; }; TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; }; TangPoemR = derive2 { name="TangPoemR"; version="0.1.0"; sha256="06w5gg36mx0vdagkhy7rskgjv2d3irr0d3nkjw26vxp25x1py4sf"; depends=[jiebaR]; }; @@ -4140,7 +4141,7 @@ in with self; { TauStar = derive2 { name="TauStar"; version="1.1.3"; sha256="06iq3kjbhyx2i8qlhvamnlch4j32psgw8q0wnvs4js513r6c0cqn"; depends=[Rcpp RcppArmadillo]; }; TaxicabCA = derive2 { name="TaxicabCA"; version="0.1.0"; sha256="0mkw7d2pksj98kyg2951achmvsr0x7f4snq0kk1s5158b5yi5npn"; depends=[]; }; Taxonstand = derive2 { name="Taxonstand"; version="2.1"; sha256="0dvhiqggbv1by284fg38rcvvrxr9q3zp5gh51p1dh0129h73qj7i"; depends=[pbapply]; }; - TcGSA = derive2 { name="TcGSA"; version="0.11.1"; sha256="072i04cp91v2ygarpqg8dlqqf8hia0ryambcv83fcchz9hzs2yx6"; depends=[cluster cowplot ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; + TcGSA = derive2 { name="TcGSA"; version="0.12.2"; sha256="1vcbkmpdfrb5ksgd11h1g9nbsd97cgiyp55p06yxkzn96sk2i6v2"; depends=[cluster cowplot ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; Tcomp = derive2 { name="Tcomp"; version="1.0.1"; sha256="1k0gsf3yr5n9zc2yi6szxm6s7bf61lz4fx8m3v48jlp5w900prwb"; depends=[forecast Mcomp]; }; TeXCheckR = derive2 { name="TeXCheckR"; version="0.6.0"; sha256="1qrzslcipg3j1317dhizxhcxyx2dpx7jh91vkms10wgc6vpqgrw4"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; }; TeachBayes = derive2 { name="TeachBayes"; version="1.0"; sha256="1mfhlkm7wp2i4hvc63xzfyw3q4z1xhlbi933pkqkbrhih94z4rz7"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; }; @@ -4173,7 +4174,7 @@ in with self; { Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TileManager = derive2 { name="TileManager"; version="0.3.0"; sha256="1my9ljgr7j9qvgc2f2qj7d8m0yp0jq8xhq31jc6mnzbsppmr1q6n"; depends=[APfun raster rgeos sp]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; - TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.2"; sha256="1a44fb29yacwgdiwaf5fpxzc5222cpi5mkv7l0dh43b6lh8f0j5k"; depends=[forecast jsonlite locfit trend tseries]; }; + TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.3"; sha256="0nq0w2j3n8ihzvz6sp3d33rhmwy1w2i7x30kyvq1s0cx65nn3ln5"; depends=[devtools forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; }; Tinflex = derive2 { name="Tinflex"; version="1.2"; sha256="0rx4aj0bxiaaap3f43jzf3rlmrjp0g8aplg1ybccdyahx4p727bn"; depends=[]; }; @@ -4184,11 +4185,11 @@ in with self; { Tnseq = derive2 { name="Tnseq"; version="0.1.2"; sha256="1n76yzk15p8i5bp3k6fszmdqk2d791r4sb8hg5hb61zb92r7wqlj"; depends=[Biobase Ckmeans_1d_dp DESeq edgeR limma]; }; ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.2"; sha256="0x05phwm6gqw1pmars1ypg86sggflffw9g2d0lc5gfsy93nrg0rv"; depends=[calibrate HardyWeinberg MASS]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; }; - TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="1.0.0"; sha256="1w8irl49cxg0rsbk57cl443gmy4i3vrh3ialx9c9d08wc7d2zisa"; depends=[]; }; + TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="1.0.1"; sha256="0yc21vs10rzmwx0z6d0gyyncr25835vb7wpn392csc5big6d73xc"; depends=[memoise]; }; TraMineR = derive2 { name="TraMineR"; version="2.0-10"; sha256="1zzszc6hnqwlqdmbpg6yphpqd5dflx384hd0dpwdgcy50r04xjgg"; depends=[boot cluster Hmisc RColorBrewer]; }; TraMineRextras = derive2 { name="TraMineRextras"; version="0.4.4"; sha256="0dx4j1pvd5i3r0yfd9acjm89k47lzyyjbkgpds66q539g24v3q50"; depends=[cluster RColorBrewer survival TraMineR]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; }; - Trading = derive2 { name="Trading"; version="1.1"; sha256="1mzqck9n14xp16vflx1sx8lry0wjmx37hqv76ldj21xnk5zbrgil"; depends=[]; }; + Trading = derive2 { name="Trading"; version="1.2"; sha256="0wlwpf1iygcs0cy7ms57b1bbp8f3s193bvc6fcm31ih5ph8pr48i"; depends=[]; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; }; Traitspace = derive2 { name="Traitspace"; version="1.1"; sha256="1wlrpnzb39vgkqy0ynbwlgrkkqgklrk6pw7f8p7p2i132qk2c291"; depends=[mclust permute]; }; TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; }; @@ -4207,10 +4208,10 @@ in with self; { TrialSize = derive2 { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; TrioSGL = derive2 { name="TrioSGL"; version="1.1.0"; sha256="0xzyv1vppw0v1xjpf83nnv1sx1xy7197ay6l7dzvr0vllappdam9"; depends=[]; }; TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; - TropFishR = derive2 { name="TropFishR"; version="1.6.0"; sha256="0cgrzxga3k3zyqmqf3qixsl0aln0g7zb39h6m9m3gpjx5ih86gbk"; depends=[coda doParallel GA GenSA Hmisc MASS msm propagate R2jags reshape2 rjags]; }; + TropFishR = derive2 { name="TropFishR"; version="1.6.1"; sha256="06793rgidq1hdm3jwg1fxpglf5vh7w3xbk4hzj1pgw04na464ibv"; depends=[doParallel GA GenSA Hmisc MASS msm propagate reshape2]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="1.0"; sha256="1qj18xcq58xah1niwxgqqzscl7dfgxh2s8fdbzk1vigwwm5xfvij"; depends=[randtoolbox]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; - TukeyC = derive2 { name="TukeyC"; version="1.3-0"; sha256="1rkd20m9f97n88zlyidipqs6nd6hldw8s4bxiwvrj1ba2lbg09p3"; depends=[doBy]; }; + TukeyC = derive2 { name="TukeyC"; version="1.3-3"; sha256="0bdnfr44hk4c1yh7i9ya95gwbwnplj3hf0k0pl1wm4ghiav39vcq"; depends=[doBy]; }; TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.2"; sha256="03lik9vkah3hjhn0l4ci95v2h4q8mnziq006idipn69l4gmnddxl"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; TunePareto = derive2 { name="TunePareto"; version="2.5"; sha256="0v1ylh4m5s80zp346pxxlvhm5070w83mlzfxjyp4n000c8r2nkf4"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; @@ -4223,11 +4224,11 @@ in with self; { UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.6"; sha256="0238irg7r3g248h4x4bdb308wvfqq99hwykywf4k2bssdd25kwjk"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="0.2.6"; sha256="0p5s4prrskqkx9fi3y78gir4gm47y2xkccg4bap5b1x50gsg1j6d"; depends=[dplyr DT httr readr shiny shinydashboard]; }; + UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="0.2.7"; sha256="1l802l1wjcgj72chzg002s75iqw2bdljl6630dah6nl847jlczas"; depends=[dplyr DT httr magrittr readr shiny shinydashboard]; }; UKgrid = derive2 { name="UKgrid"; version="0.1.0"; sha256="1xfg2v82264wlvv6x0xppz7g7jka1y0d615g9rwcb236y64h2xrk"; depends=[data_table dplyr lubridate magrittr rlang xts zoo]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; UNF = derive2 { name="UNF"; version="2.0.6"; sha256="0sr740dhfp7z9wvhajww43g5gz79x5y5dbflw5a813jgmiqm1jyq"; depends=[base64enc digest]; }; - UPMASK = derive2 { name="UPMASK"; version="1.1"; sha256="1qxajvld8g2mii12agypcm50fps9bai6d2wx6l0bv3srk80in7ai"; depends=[DBI MASS RSQLite]; }; + UPMASK = derive2 { name="UPMASK"; version="1.2"; sha256="160rsb0nbndf61khcs3s8xv9nj7ln8zl6l11157ywdcjqd2q5qnq"; depends=[DBI dimRed loe MASS RSQLite]; }; UPSvarApprox = derive2 { name="UPSvarApprox"; version="0.1.1"; sha256="1lm3xzj70s070ag2sk24nq5ayckk3mnqfmwppbhq5i4y13fw6vip"; depends=[]; }; USAboundaries = derive2 { name="USAboundaries"; version="0.3.1"; sha256="1mqbxkv347307mbvn70929bi3l8wmiwrp86rxdgy45g2ddjdcb6s"; depends=[]; }; USCF = derive2 { name="USCF"; version="0.1.3"; sha256="00ynxfd4lg8g4mspz5izxvgkj27l2i1cnp0z0dnkhsbxsg0161mj"; depends=[]; }; @@ -4305,7 +4306,6 @@ in with self; { ViSiElse = derive2 { name="ViSiElse"; version="1.2.1"; sha256="14vv25wnqcplf7k0ybfdlcvyhnja0h0kvz39yzlh2qkavjvdaf2y"; depends=[chron colorspace Matrix stringr]; }; VineCopula = derive2 { name="VineCopula"; version="2.1.8"; sha256="1sdj6561ya7px4bp4kq23ggjf1bmis465zpnwn0i650z3q6y7al7"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; VisuClust = derive2 { name="VisuClust"; version="1.2"; sha256="0hnjmrz352950rzky88q4nwvkx7zp6x3lsm7kff5dl4w05iq4wsl"; depends=[aplpack]; }; - VizOR = derive2 { name="VizOR"; version="0.8-5"; sha256="1v76m67xdlg06w3dmp27mh3mv3lfqy6bd1iq907dynp2g4qf4ww0"; depends=[lattice rms]; }; Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; VoxR = derive2 { name="VoxR"; version="0.5.1"; sha256="07lsp6lrkq0gv55m84dl9w7gz5246d9avypqnkz96n3rbbgd0w5z"; depends=[]; }; W2CWM2C = derive2 { name="W2CWM2C"; version="2.0"; sha256="139rbbhshiap3iq4s4n84sip3cwwjn2x7lm7kmzwj5glhl5dc6ga"; depends=[colorspace wavemulcor waveslim]; }; @@ -4325,9 +4325,9 @@ in with self; { WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WRS2 = derive2 { name="WRS2"; version="0.10-0"; sha256="17iriwkng75iy93mp99ihzmvgpgbrg0sgwxs2yx1d3ss7h0k1x3j"; depends=[MASS mc2d plyr reshape]; }; - WRSS = derive2 { name="WRSS"; version="2.0"; sha256="0a6k6c9xpxglw2ph90i8kb1d1kpai82caqkkdy2si6zihs3ih87i"; depends=[GGally ggplot2 Hmisc network nloptr]; }; + WRSS = derive2 { name="WRSS"; version="2.1"; sha256="0sjzjplcxf5b73sw2fx44pk5kf7q2znqlqrhs34z84ji14239cd6"; depends=[GGally ggplot2 Hmisc network nloptr]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.1"; sha256="0q2rdzbz3cbgr19sh9j3fqdn0lvwrq93qq2rjmnhx6ia9avkywa8"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; - WVPlots = derive2 { name="WVPlots"; version="1.0.7"; sha256="011jknqzrfgk1kqb4k6w5yb6vgcvzjmn9cq7r0snwsfn1zbzs63y"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="1.0.8"; sha256="15xrvqxs80a9y9d08939gxw92xdwqz45z8l7i7vvjaapijwa8r0n"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; }; @@ -4338,10 +4338,10 @@ in with self; { WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; WeMix = derive2 { name="WeMix"; version="2.1.0"; sha256="0bnj4iziclmvqxzb51sjvs0mlk9glkg5yvcvh349m8cvv2634dsb"; depends=[lme4 NPflow numDeriv Rcpp RcppArmadillo Rmpfr statmod]; }; - WebGestaltR = derive2 { name="WebGestaltR"; version="0.1.1"; sha256="0cdpfwp4whx8pff73acxga072lwbibl44hxdjs9jsb5i21h55vbr"; depends=[data_table doParallel foreach pkgmaker PythonInR rjson]; }; + WebGestaltR = derive2 { name="WebGestaltR"; version="0.3.0"; sha256="0k15blnmb14kj9wr8h4x4sywphjgg88k5j9c9gdcrcf0xhvl0r4a"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph Rcpp readr rjson rlang whisker]; }; WebPower = derive2 { name="WebPower"; version="0.5.2"; sha256="11255q41zai4q6n2mpk3fzhi2lyyr3g8dxqfajkb93f68m1b38jp"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullR = derive2 { name="WeibullR"; version="1.0.10"; sha256="1h2w1rgap9yjns7cby0559jwzzwhzjq1h6lwsawrfnni7c36iliq"; depends=[Rcpp RcppArmadillo]; }; - WeightIt = derive2 { name="WeightIt"; version="0.5.0"; sha256="06cqbnbha46pk042m47zqvgwjslic5zc0lpv13dssb1nz2xy3q0f"; depends=[cobalt]; }; + WeightIt = derive2 { name="WeightIt"; version="0.5.1"; sha256="16gj7ynk4l67z7fjc345211hgqwxbdb6z1bpy27z5s4i7x4fyf8y"; depends=[cobalt]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.2-1"; sha256="04gsr65mssv4cz4v8sh44qhyzn0isll057d45z4ljv6sx0an5yhl"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; @@ -4392,6 +4392,7 @@ in with self; { ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; ZOIP = derive2 { name="ZOIP"; version="0.1"; sha256="0fraxzr2mfd7w705j2fryhh9vpg6nkag6kmk7p7in3zknxwipfh3"; depends=[boot GHQp numDeriv rmutil]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; + ZVCV = derive2 { name="ZVCV"; version="1.0.0"; sha256="1npw836q2skx54843lgxvb0rfwafckjc8k8dljykm60ad3z7zak8"; depends=[abind glmnet mvtnorm partitions Rcpp RcppArmadillo]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; Zelig = derive2 { name="Zelig"; version="5.1.6"; sha256="142kjmgma25pvr525y0mjiwivnmq8y8s1abw4kyqipcmphmgh3an"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-6"; sha256="1whfwc42lsi54xfr423h6jwbvpj6yjyyf0854k1f1ms13liahm8w"; depends=[dplyr Formula jsonlite MASS VGAM Zelig]; }; @@ -4423,6 +4424,7 @@ in with self; { abn = derive2 { name="abn"; version="1.3"; sha256="1q9hzpxwg835711kxwygd0l2awal6f015f8s6fprwz7graz1wbbm"; depends=[Cairo lme4 MASS nnet Rcpp RcppArmadillo rjags]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; + abstractr = derive2 { name="abstractr"; version="0.1.0"; sha256="1ymwp7syrynwd4i8aj2x5n8jdi9d96fjzl6jb09n0bnr5fgl7vig"; depends=[colourpicker emojifont ggplot2 gridExtra rintrojs shiny shinythemes]; }; abundant = derive2 { name="abundant"; version="1.1"; sha256="1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"; depends=[QUIC]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; @@ -4442,7 +4444,7 @@ in with self; { acs = derive2 { name="acs"; version="2.1.3"; sha256="1r6lywjhdi53873c2hl670hbaycrlycaps5pll2i9czr1phlv0rj"; depends=[httr plyr stringr XML]; }; acss = derive2 { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; }; acss_data = derive2 { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; }; - activity = derive2 { name="activity"; version="1.1"; sha256="1lqajgxfps2h6amz1791vp3f52rs9ghmanq1nqfxqd2jmk3idkrx"; depends=[circular overlap pbapply]; }; + activity = derive2 { name="activity"; version="1.2"; sha256="11w2bz6p9xbzdh6773dmbbh6rws0h5dj18p8m0ivzizgq932vdzs"; depends=[circular pbapply]; }; activpalProcessing = derive2 { name="activpalProcessing"; version="1.0.2"; sha256="1y0bjx2qx53iy930y9iww4q1yzjj8y16cwgixk1mq3w4g1f116d1"; depends=[chron]; }; actogrammr = derive2 { name="actogrammr"; version="0.2.3"; sha256="1jzvarmd41yqlrkagzlc8m19n5mn0w0b36fy50lyvgrfsafjfbqa"; depends=[dplyr ggplot2 lubridate readr tidyr]; }; actuar = derive2 { name="actuar"; version="2.3-1"; sha256="0i0w5y0bgma42p4cbrbv0bxkambp7hgqqlsg90p5skfvg7r1n3bk"; depends=[expint]; }; @@ -4503,8 +4505,9 @@ in with self; { aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.4"; sha256="1abi6cdgh9k6x9vapca3gcf3hn1z9dsmw24as9i5i2c57q06b6qx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; - agricolae = derive2 { name="agricolae"; version="1.2-8"; sha256="1c6n52jralp33hl3nmpv9fc9vsvs6lcz9j75f2zbz0r4sqd2mw89"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; + agricolae = derive2 { name="agricolae"; version="1.3-0"; sha256="0699apfn7xidr5fz6mb4vvrb4mq73c839d99894s1cyg7hrk1bdw"; depends=[AlgDesign cluster klaR MASS nlme spdep]; }; agridat = derive2 { name="agridat"; version="1.16"; sha256="1kgmjrj207md86qivadkmv3s2gh3hi9zv63bsj8b9vlcd9f58pfk"; depends=[]; }; + agriwater = derive2 { name="agriwater"; version="1.0.0"; sha256="0m1dpv69nf3pjp63z3a5710skgb6sbrmjv6b8rxvq9lrw63993g9"; depends=[raster rgdal sp]; }; agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; @@ -4516,7 +4519,7 @@ in with self; { aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; airGR = derive2 { name="airGR"; version="1.0.15.2"; sha256="1lnqmf2rcj7hynlxnhb52jizx2c8b5bw04apgldg0bnr1jscn7pi"; depends=[]; }; airGRteaching = derive2 { name="airGRteaching"; version="0.2.3.2"; sha256="1i3pkpf6h958m0jw90q6767svy7waikwqxiq6spqg02lmfw88swp"; depends=[airGR dygraphs htmlwidgets markdown plotrix shiny shinyjs xts]; }; - aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.0"; sha256="1hipp3yqhhifxv30a92ycdzqi3ldry4hi761w0mb43rndpp5lziz"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; + aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.1"; sha256="1yd6m5pjnmkz3p9jjk9dv8cx67p7l88gw6ccfpa8a82bmwda01d2"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; airportr = derive2 { name="airportr"; version="0.1.2"; sha256="06jk4dhr4qj6fpmlvslnbqj67qy78spcb7yhqa4qn2im4kpmb73q"; depends=[dplyr]; }; airr = derive2 { name="airr"; version="1.2.0"; sha256="1vswbjmyhygmyqymkfxad9nwsbcgaggian1fyrx63w0y9c4dfv1h"; depends=[readr stringi yaml]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; @@ -4534,7 +4537,6 @@ in with self; { allan = derive2 { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; }; allanvar = derive2 { name="allanvar"; version="1.1"; sha256="142wy1mf4jbp4hy756rz95w24f4j1dgf14f1n5sd09dg4w98j7xg"; depends=[gplots]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; - allelematch = derive2 { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; }; allelic = derive2 { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; alpaca = derive2 { name="alpaca"; version="0.2"; sha256="0hjy7irxa31kv92xvnj58zasmy4drbmaq6g1js4d5ns6d6fqx845"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; @@ -4563,8 +4565,10 @@ in with self; { analogsea = derive2 { name="analogsea"; version="0.6.0"; sha256="1fcvf3yci3szm155pnk89q36dgc55wdlffvll642zn26zc5d1y5n"; depends=[aws_s3 httr jsonlite magrittr yaml]; }; analogue = derive2 { name="analogue"; version="0.17-1"; sha256="09xv6dxdlc5kwsbh9vzp2mnxgbccimiadjpj12iiw6hcplw6v4ma"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; + analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.0"; sha256="1q0xhqzc2x3kvz6kray7ckm2i88k488jicsw7wngnywmjhl4z3ni"; depends=[devtools dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; }; analytics = derive2 { name="analytics"; version="3.0"; sha256="0js3c8lwj3knccb55nq03cbjlf4w390p9aid2mi5x80l3ayd9in1"; depends=[car cluster fractal lmtest MASS np powerplus robust trend TSA urca VIM]; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; + anapuce = derive2 { name="anapuce"; version="2.3"; sha256="05k3ypy4dc8q4jv0by37k66pdwb1wmsd24i6nciris5knfdy9csg"; depends=[]; }; anchoredDistr = derive2 { name="anchoredDistr"; version="1.0.3"; sha256="07q4np0zryb49cpi7w5iz0qna63cyp9nz13d8ws6x9ccg417r99a"; depends=[DBI dplyr ggplot2 np plyr reshape2 Rmisc RSQLite]; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; @@ -4585,23 +4589,23 @@ in with self; { anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; }; antaresEditObject = derive2 { name="antaresEditObject"; version="0.1.5"; sha256="0bh5p7lbmjq2ycxhf4ckc6g89gx0d5wv2qv64y89nbil9ydmcpvd"; depends=[antaresRead assertthat data_table whisker]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.17.0"; sha256="0mq2b1dkkgli8d53mpcllilh72gf8189f5mf0dxjcv4qinnhrrvm"; depends=[antaresRead data_table stringi]; }; - antaresRead = derive2 { name="antaresRead"; version="2.2.1"; sha256="0j94waw0pq9fni4kpmcry354fwpqg64k9si5p3zgcrxhx3ah2dp5"; depends=[bit64 data_table lubridate plyr shiny stringr]; }; + antaresRead = derive2 { name="antaresRead"; version="2.2.2"; sha256="0kg5yj1swjapibvrr54ba1nqhxswhr50syy90q0d75j3qf3k9a3d"; depends=[bit64 data_table lubridate plyr shiny stringr]; }; antaresViz = derive2 { name="antaresViz"; version="0.15.0"; sha256="16gf5spgx56rgf2d25zv5dihhbbgvfxryswfqa4gjlpjc2827zar"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; antitrust = derive2 { name="antitrust"; version="0.99.10"; sha256="1xgkbsnsn39s37my7sj917kvq67gxwai7k7lym2i18m60cnz0ilb"; depends=[BB evd MASS numDeriv]; }; antiword = derive2 { name="antiword"; version="1.3"; sha256="034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; anyflights = derive2 { name="anyflights"; version="0.1.0"; sha256="14mmzyhm8nz2xjs7bfyihgvy0an01lpv6hn9dxcqvbcsc7vfmigs"; depends=[dplyr httr lubridate RCurl readr tibble]; }; anytime = derive2 { name="anytime"; version="0.3.3"; sha256="1ns2c8lnvn31yw0ll4h4isfl1k3jic43c6wa0x7xgnxhmznq7abm"; depends=[BH RApiDatetime Rcpp]; }; - aod = derive2 { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; }; + aod = derive2 { name="aod"; version="1.3.1"; sha256="1g03ajhs6bid80i83xn3917abhymzgrydqx86wxxpkqga018hb85"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.1"; sha256="1kdmgzd5nkzm0awdjls6fc8p9hxsph9ha9k1jxbppdi4i6f0i7rv"; depends=[boot lme4]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; - aop = derive2 { name="aop"; version="1.0.0"; sha256="1i3mixiwcvqygbcvj6f9vm223plmydzmixpy6nhis2zv9d90vakd"; depends=[ggplot2 graph igraph plyr Rgraphviz rjson]; }; aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0"; sha256="0mnydk157557pnkjvcadlghn5d8w9kxas4kwz4y4w21xg7z1jrig"; depends=[ape coda cubature pbapply quantreg]; }; - apa = derive2 { name="apa"; version="0.3.0"; sha256="0bpg2nf6838mb2apj2wqi1gbn3zbm7lsixykgkzr539rcdjfdggd"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; + apa = derive2 { name="apa"; version="0.3.1"; sha256="1kxvhmbflj3yxpq3i8c4r5v0nc9qqk2a05iycmbl4in99ncmkmc9"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; apaTables = derive2 { name="apaTables"; version="2.0.5"; sha256="0h986jqdl65fd33gfa433ik77r6lm9zrq75qfk5r8xsdgzb4wgva"; depends=[boot broom car dplyr tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; + apcf = derive2 { name="apcf"; version="0.1.2"; sha256="155a22inb2brpf5vj7iw2pqqbiaxdlddv4wzaq8i0jfpdy4zd1h0"; depends=[Rcpp]; }; apcluster = derive2 { name="apcluster"; version="1.4.7"; sha256="188hdfmwjjx3aic599nwmkzjqm9j9jighi5bly6qd43c1vj6ih2s"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="5.2"; sha256="05b4yka5cirdgxd4d7iiaqvr428pk3j6n9q6dvg5j38kdj2h5sr7"; depends=[lattice nlme Rcpp]; }; @@ -4612,6 +4616,7 @@ in with self; { aplpack = derive2 { name="aplpack"; version="1.3.2"; sha256="14vwzzshsgkw6gxwnnf6h9fixnwp3g8pd3rv6qjr0y8gis1lmjbg"; depends=[]; }; apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; apng = derive2 { name="apng"; version="1.0"; sha256="13hvr1w566anrhdicaqwqjgfq2lk3zkn5gcfgy8zazjnad4vy07y"; depends=[bitops]; }; + apollo = derive2 { name="apollo"; version="0.0.1"; sha256="0fzg2h0i2fibphc6anbv4l5la5wdf61hjawaxv6q36lqc0aibzsf"; depends=[coda maxLik numDeriv randtoolbox RSGHB sandwich]; }; appell = derive2 { name="appell"; version="0.0-4"; sha256="0g7pzhxqgscnyf07xycbrpyimp1z1hljgcr3nqigpx09w7zi5wlw"; depends=[]; }; apple = derive2 { name="apple"; version="0.3"; sha256="194z2f6hwdjjxdkjwlmfhpfp26p9yp3gparklhdbb6zlb4a9nnhz"; depends=[MASS]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; @@ -4625,7 +4630,7 @@ in with self; { apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; }; aptg = derive2 { name="aptg"; version="0.1.0"; sha256="06z8041h1k9v0ymd7azn11xzhqxb8lda4r7nyg51h8z3i8mpq1ba"; depends=[ape brranching phytools taxize xml2]; }; aqfig = derive2 { name="aqfig"; version="0.8"; sha256="0ha0jb5ag3zx6v7c63lsm81snslzb8y8g565mxjmf7vxpcmzzqsi"; depends=[geoR]; }; - aqp = derive2 { name="aqp"; version="1.16-3"; sha256="16b7yshsi5cwd8spvjmlnnnyvcvkxjcsjkwxizpxjwzy3fdkc4g6"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; + aqp = derive2 { name="aqp"; version="1.17"; sha256="1r3yxb3dw9drgi6xpzyrmg9i08l1mrvdc05v5mwvhhply7v8n3d4"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; ar_matrix = derive2 { name="ar.matrix"; version="0.1.0"; sha256="1d531hkl50szfa1q0zbp8dp1a9jli63kwvxjgc9n0ar279y47qdz"; depends=[MASS Matrix sp sparseMVN]; }; arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; @@ -4655,11 +4660,12 @@ in with self; { aroma_apd = derive2 { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; aroma_core = derive2 { name="aroma.core"; version="3.1.3"; sha256="0zikic3hqfn00kgb0078paikz4bdcqq0qygvl4xbvq48868wcz1q"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; + arpr = derive2 { name="arpr"; version="0.1.1"; sha256="0j69nbmhmhmyfna011gv68wvxv1x2lijz94pyg9g2ax720x74i2q"; depends=[magrittr]; }; arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.5"; sha256="05frcgk9jxjbbkrj2mmv5vwj8zfbg3pvkysi1fjd9sbbimlzvjn7"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; - arsenal = derive2 { name="arsenal"; version="1.5.0"; sha256="0yljqa643maa64zq2jig6yiqn1pwhn8sjpmynqfrq5r8pv7xggb3"; depends=[testthat]; }; + arsenal = derive2 { name="arsenal"; version="2.0.0"; sha256="0wqzw9wkhgskdc267h87sglanq8n51r26fdhqpb479qyadb081yv"; depends=[testthat]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; arules = derive2 { name="arules"; version="1.6-2"; sha256="0vnss6akk3564kbci3h5rq8ylpckz77cgmflly3gn6fki66f7g96"; depends=[Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.1.4"; sha256="1d0ln8mislns7ix1rch63ry4856b2cnpx99rmw9d967dmvyrm8vs"; depends=[arules discretization Matrix testthat]; }; @@ -4668,22 +4674,20 @@ in with self; { arulesViz = derive2 { name="arulesViz"; version="1.3-2"; sha256="14cv63kgxjks789gjlxsag5ih146wx0g1pgfgnv12pax022kmwxw"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.5-3"; sha256="0k4cyivh08p9psp0z07nqa04i7xcqf4gh7x0vfk17rvycywksbhy"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; - ascii = derive2 { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; }; - asciiSetupReader = derive2 { name="asciiSetupReader"; version="1.4.0"; sha256="0pq23ncwlndhzw4qfvzcv9nh74fq6hh9k6w96xhxx69ajy9zd2ys"; depends=[data_table haven readr stringr zoo]; }; + asbio = derive2 { name="asbio"; version="1.5-5"; sha256="0nq388b9ma0a3p5l57v1b4js8i2a6n5rip3yi0zzzfwi3n3kxi77"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + asciiSetupReader = derive2 { name="asciiSetupReader"; version="2.0.1"; sha256="0014vv9h6lw2ch8a54in1aw1xcqkz8kqxv2pdsrb3nl2k7k0fjf7"; depends=[data_table haven readr stringr zoo]; }; asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; }; asd = derive2 { name="asd"; version="2.2"; sha256="0p3r4qjam3sl3rpcilb0pgx4xx3ly71xqnvkv31vzjs885lgxz4l"; depends=[mvtnorm]; }; asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; - ashr = derive2 { name="ashr"; version="2.2-7"; sha256="1bgkzab7f7fqi259vxrpkxq8yzhh1sl3mqdzc73dk54c5849b2pz"; depends=[assertthat doParallel etrunct foreach Matrix pscl Rcpp SQUAREM truncnorm]; }; asht = derive2 { name="asht"; version="0.9.4"; sha256="1aq384vgf26ig3isyp99z09glcjhl2qd43kp8qdcwk75dcrmxd7z"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; - askpass = derive2 { name="askpass"; version="1.0"; sha256="0smk5i16di0x3him3v48sh17jqm1zxmy5vdi3d48gfvxsfz323gi"; depends=[sys]; }; + askpass = derive2 { name="askpass"; version="1.1"; sha256="07q0ik8jzk44vpwh48rr3fnpd7dzsdhjjsl4l850rffv3dyq4h6v"; depends=[sys]; }; aslib = derive2 { name="aslib"; version="0.1"; sha256="0dkb6bb6dqavjklbciqxqhi3fdqib9asdnhiap2gp9b9wfnkyq7k"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; asnipe = derive2 { name="asnipe"; version="1.1.11"; sha256="06bjw99rssna1pgxq8yrsp3mbwgs2x3wxf86him1766gvcs9yawq"; depends=[MASS Matrix]; }; aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; - asremlPlus = derive2 { name="asremlPlus"; version="2.0-12"; sha256="119r7wwrz11j85idq21xdp2wq7l2jly73q3179d3bsywbmx5sr17"; depends=[dae ggplot2]; }; + asremlPlus = derive2 { name="asremlPlus"; version="4.1-10"; sha256="1j9kadrja407d7s7w9h6kfir5q1gdzj41hbr7l1dbfsz8i8bvr83"; depends=[dae doParallel dplyr foreach ggplot2 plyr RColorBrewer reshape stringr]; }; assertable = derive2 { name="assertable"; version="0.2.4"; sha256="1d1mc5k9jwn2h5bny3bpkwy10kfz5qlp03z12z9401v47q12d61i"; depends=[data_table]; }; assertive = derive2 { name="assertive"; version="0.3-5"; sha256="0blbbhlxcb5ffdxqxi62xs33ljiawh6s22a0pyvbbh79jf46rzr3"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; assertive_base = derive2 { name="assertive.base"; version="0.0-7"; sha256="1xs3ysvj0z57c58jw57pckq2rynia6ks4rmjmc02alczhk54wbgh"; depends=[]; }; @@ -4701,7 +4705,7 @@ in with self; { assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; - assertr = derive2 { name="assertr"; version="2.5"; sha256="17j5aw19cp9csbxhf277yrr4vlr2c5sk70v9a4fnch0c2q14l5f3"; depends=[dplyr lazyeval MASS rlang]; }; + assertr = derive2 { name="assertr"; version="2.6"; sha256="0g4ii6vhp0155a29ljhs64a09x0nzy5ybvwwchhk4mkcgsvnvfkj"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.0"; sha256="1wp5znk3xy338x6hknppk702jn596yr735d9i7c3wabm3sdzfgnp"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.1.4"; sha256="1w13ls4d7gvp17dz0jafwnw9kqn3kl670vs0wf50rladg2fmh7af"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assist = derive2 { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; }; @@ -4711,7 +4715,7 @@ in with self; { aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astro = derive2 { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; - astrochron = derive2 { name="astrochron"; version="0.8"; sha256="0cliwmzm4p4f1csrx95wh3gl9nkmx3agbgrmpmf34rw6bpwmsf85"; depends=[doParallel fields foreach IDPmisc iterators multitaper]; }; + astrochron = derive2 { name="astrochron"; version="0.9"; sha256="14bzyp2927rklx9lfd3bikf5ck8irvr3s7266mh2245lyy79g9xi"; depends=[doParallel fields foreach IDPmisc iterators multitaper]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; astsa = derive2 { name="astsa"; version="1.8"; sha256="023nk6chyy79scjzhv42px5cpym7rnm1c55ylcslyjdmlr5i6afk"; depends=[]; }; @@ -4728,9 +4732,8 @@ in with self; { atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attempt = derive2 { name="attempt"; version="0.2.1"; sha256="0366sq1mf3d0amf6yfa42gw1gwwr9rbbqnqvr8hai1bfl672zkcp"; depends=[rlang]; }; attrCUSUM = derive2 { name="attrCUSUM"; version="0.1.0"; sha256="113y40v9hyvnvvzvyqg81n0n1h84pj4zph5q8p0vc0384hw00544"; depends=[Rcpp RcppArmadillo]; }; - attribrisk = derive2 { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; }; atus = derive2 { name="atus"; version="0.2"; sha256="1i67rx8p5v4shgbfcym4lbnlw55xx7w2fdzhgsgjjyfpwbpm7h4h"; depends=[]; }; - auRoc = derive2 { name="auRoc"; version="0.1-0"; sha256="1ijk127p6g5mzc7b4b9lnjnfzvklz3g8w6bckrdahlw7djd9mgz1"; depends=[coda MBESS ProbYX rjags]; }; + auRoc = derive2 { name="auRoc"; version="0.2-0"; sha256="1q5cpa1y96bs5x0vifi0h6ca4yasg3z57yhq29vicd433h3phy3x"; depends=[coda MBESS ProbYX rjags]; }; aucm = derive2 { name="aucm"; version="2018.1-24"; sha256="0x10dawlwxqywjl7mxc2gpp2r4wnd7pb6n80xlrb9yywm7zbb6x2"; depends=[kyotil]; }; auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; }; audio = derive2 { name="audio"; version="0.1-5.1"; sha256="1imh2l43n1cvwzzby598qn59rsm5262snril6b98hyih7mw7fyad"; depends=[]; }; @@ -4739,7 +4742,7 @@ in with self; { auditor = derive2 { name="auditor"; version="0.3.1"; sha256="1ndd5a5264b91qaw0qj9rwjvhn9lgw7y5dirjqlzkib6q9mcyanq"; depends=[car factoextra fdrtool GGally ggplot2 ggrepel gridExtra hnp plotROC ROCR tseries]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.1"; sha256="1k71dh5bqcqcjj7f816ww5pgckyq02s9w7qds69ny1zarfzh827w"; depends=[Formula MASS Rcpp rootSolve]; }; augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.0"; sha256="0kxhrz6s2njfj9b20mqmlgs7hy2227vrj00048cf8447l3y2a9lj"; depends=[dplyr emmeans flextable ggplot2 moments multcomp multcompView officer Rdpack reshape2 stringi]; }; - auk = derive2 { name="auk"; version="0.3.1"; sha256="0890bqp7zh8pjjy4pnprgkmcjpap60wa9ysm6hvqd7phb0ijgda4"; depends=[assertthat countrycode dplyr httr rlang stringi stringr tidyr]; }; + auk = derive2 { name="auk"; version="0.3.2"; sha256="1wa8l1842b9c0mmsgj2v6c0bf6aahdr8m06p9hclv37cnms858kg"; depends=[assertthat countrycode dplyr httr magrittr rlang stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; auth0 = derive2 { name="auth0"; version="0.1.0"; sha256="0i1hfi7956nsd2jz554pzj3l21jypd3ys53ran01m0nqlwmpld6p"; depends=[htmltools httr shiny yaml]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; @@ -4750,7 +4753,7 @@ in with self; { autoimage = derive2 { name="autoimage"; version="2.0"; sha256="102f7wkrglsvdrsmyy79v0w7za5b79sn59czxzhriwrp4mrpdl47"; depends=[fields ggplot2 mapproj maps MBA viridisLite]; }; automagic = derive2 { name="automagic"; version="0.3"; sha256="0yzv0ianfq217jvz7rba86bcmxh09p513khvq6jk5k7isblvn0qd"; depends=[devtools dplyr formatR githubinstall knitr magrittr pacman purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; - automl = derive2 { name="automl"; version="1.2.6"; sha256="1cwk09fyx1c50nrsq0xvy3289013yczqwwwnlvd5vz656hrq3nwk"; depends=[]; }; + automl = derive2 { name="automl"; version="1.2.7"; sha256="01qvskwsv5if78hsaw13b14ys1pjni0l42ihgg8149d0806294ga"; depends=[]; }; automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.2"; sha256="0ajzzj9w9f0v9n37liml63hq5xwkqq53lw85p0a2h99n4lg2hdg8"; depends=[ggfortify ggplot2 plotly]; }; autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; @@ -4782,11 +4785,11 @@ in with self; { b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; - bWGR = derive2 { name="bWGR"; version="1.5.6"; sha256="1c0f3y30gynvlf70fakhspp91q5fdq9b4hii18i1qq89162qgnd8"; depends=[Rcpp]; }; - baRcodeR = derive2 { name="baRcodeR"; version="0.1.1"; sha256="0lxdb62kpqlric9jdkfz7ff9m5cfjgw3qgcrxmjfbw5nm8dkfp7l"; depends=[DT miniUI qrcode shiny]; }; + bWGR = derive2 { name="bWGR"; version="1.5.7"; sha256="0xjyph27vf7sbw92x00gkvgjjnh6vv5hfjq7kjfjwksvljmqj2yj"; depends=[Rcpp]; }; + baRcodeR = derive2 { name="baRcodeR"; version="0.1.2"; sha256="02v66jjwr4h4qmn11xszsh4bl0y4nvw4nf6c0yi3x9s9a6dhk93b"; depends=[DT miniUI qrcode shiny]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; - babynames = derive2 { name="babynames"; version="0.3.0"; sha256="018wyajdkpvcywcvkna57m5sqnsh7i9zq2hqlyb8q93mgyb3ddzm"; depends=[tibble]; }; + babynames = derive2 { name="babynames"; version="1.0.0"; sha256="1vchzyk5pkr0zhh1q8k9g771n45jxiislipwkgrgamv7yzr49xsp"; depends=[tibble]; }; bacistool = derive2 { name="bacistool"; version="0.9.8"; sha256="1yq7d2657l6iyy5v094c9rwphbpyhnijhwvacwhb07k6c6h069wh"; depends=[rjags]; }; backShift = derive2 { name="backShift"; version="0.1.4.2"; sha256="1nj7mcdpzfzq68qg86rrys752gzw69n99yyb0jzg6r8qrgpcxj49"; depends=[clue ggplot2 igraph MASS matrixcalc mvnmle reshape2]; }; backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; }; @@ -4794,9 +4797,10 @@ in with self; { backports = derive2 { name="backports"; version="1.1.3"; sha256="1hac46xaawnqajlsfb5k7pfkc2ya9h76s5qv9ycj3jafh93d26z4"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; - badgecreatr = derive2 { name="badgecreatr"; version="0.1.0"; sha256="070zb5jw817s9ykqc3dvzjqk48612gydkdc31svc0ji01s1y1545"; depends=[stringr]; }; - badger = derive2 { name="badger"; version="0.0.2"; sha256="15qnb0a6rqsf1dbb1cf9ag2z5f4zhf8b8psxbsdhh42qrg8g3mma"; depends=[dlstats rvcheck]; }; + badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; }; + badger = derive2 { name="badger"; version="0.0.4"; sha256="0y0kr0r5b44c19w93sisd61khiwhlgj3n88mhfgs3ljbl68qjcvh"; depends=[dlstats rvcheck]; }; bagRboostR = derive2 { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; + bain = derive2 { name="bain"; version="0.2.0"; sha256="1fkjcsfay4a97arx794nvb8a1vy8y0x02xj3shndb8bywcg6xyqw"; depends=[]; }; bairt = derive2 { name="bairt"; version="0.1.2"; sha256="17nc0lp0bzwshik33v0gq5d6nd2gvm4799b7rfiq089zhnzv90kj"; depends=[coda mvtnorm shiny shinyjs]; }; baitmet = derive2 { name="baitmet"; version="1.0.1"; sha256="02ydakqr8v41hdnhcsgigwnic8d48qswryg1srb5w1fqdmdglnkl"; depends=[erah HiClimR Rcpp signal XML]; }; balance = derive2 { name="balance"; version="0.1.9"; sha256="1nr6v0m98rx30ij4q80w5i1f9rss7w4k9yk074y9xp2dpaxh36s6"; depends=[ggplot2]; }; @@ -4804,7 +4808,7 @@ in with self; { bamboo = derive2 { name="bamboo"; version="0.9.23"; sha256="02mvj78kkcpa0bszf8jd0s7nvjwhgbxhgazqssw0fjifs2iqr2zn"; depends=[rscala]; }; bamdit = derive2 { name="bamdit"; version="3.2.1"; sha256="18l9kd3a0d4y6z38k9nm18j32g6dxmwylv8cv1wp3fzffv51lm1s"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; bamlss = derive2 { name="bamlss"; version="1.0-1"; sha256="1nxy8a075dhdwz9jhyicqj1naz95w0mns64c6j59gpzwp03nvml4"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; - bamp = derive2 { name="bamp"; version="2.0.5"; sha256="0z8gv9py6ismvphxfm75h4hxzc44183kvd7hsiq47k5c5sb63wl9"; depends=[abind coda]; }; + bamp = derive2 { name="bamp"; version="2.0.6"; sha256="08g2s67vawx4f64nnppfdh762wpdfdfc3j7dcah1hnd615k3p5dm"; depends=[abind coda]; }; banR = derive2 { name="banR"; version="0.2.0"; sha256="0m71m99f8f4wckylry6z16gw6r2cc4wxbd9287ns00jr6s13x6c8"; depends=[dplyr httr magrittr purrr readr rlang stringr tibble]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.0"; sha256="16wy2imrdvhpdzi6ix9k69afqdyc44d1xr655yd3q1cl12x1nr04"; depends=[bayesplot rust]; }; @@ -4822,12 +4826,12 @@ in with self; { base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; - basefun = derive2 { name="basefun"; version="1.0-2"; sha256="16j7lzpyiw9iw3zb1cw2l685303dljv93kdxgfdzajzgcmmmpr6m"; depends=[Matrix orthopolynom polynom variables]; }; + basefun = derive2 { name="basefun"; version="1.0-3"; sha256="043scdc9yr9dhldvxyk8rp2hmlaxfxksljbhv460hwr0xnc2k9p8"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; }; basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.1.2"; sha256="121aiac2n6fxsmgspnj14y0m1xm2aryswq1v9a0bi97dfl251mna"; depends=[]; }; basicTrendline = derive2 { name="basicTrendline"; version="2.0.3"; sha256="10rq9hriyn50b28ikvl0vsvchbkrc0pjzxamq4ix1xd04n4drkl9"; depends=[investr scales]; }; basicspace = derive2 { name="basicspace"; version="0.20"; sha256="0nyljk8ydasirgv7ijxplyhk10s8m9k3rw5qmgf0z81dm7p257wc"; depends=[]; }; - basictabler = derive2 { name="basictabler"; version="0.1.0"; sha256="1m4cgghfh3aixsnwjlbaj3prnnqxhij60bakz9vdr5dvnqg92an9"; depends=[dplyr htmltools htmlwidgets jsonlite R6]; }; + basictabler = derive2 { name="basictabler"; version="0.1.1"; sha256="1ish1pjrnffq7xz1jyf1w1mp8bx001vgryf4mvnh5mh2hdrllkf7"; depends=[dplyr htmltools htmlwidgets jsonlite R6]; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; }; batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; }; @@ -4837,12 +4841,12 @@ in with self; { batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; bayesAB = derive2 { name="bayesAB"; version="1.1.1"; sha256="0kxrhxg43hzkcziyqpwy29iqs7i0qi3pn3jz0z1s8paf8drbgdf4"; depends=[ggplot2 Rcpp]; }; bayesCL = derive2 { name="bayesCL"; version="0.0.1"; sha256="1l278lxidn16nma2ny14wjajcqyzbr6j5xl2lj08cic26c7hvjbm"; depends=[]; }; + bayesCT = derive2 { name="bayesCT"; version="0.99.0"; sha256="0dw0dgsbyd1cy4wa4kg2im7yk5lwgk41n3ifaxghby209278sj7n"; depends=[bayesDP devtools dplyr knitr magrittr msm purrr tidyr]; }; bayesDP = derive2 { name="bayesDP"; version="1.3.2"; sha256="1xv133v01mbfsy0w5acc9819m92dcxfdjg4a8p7kdfkycz4ilwnl"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="2.0"; sha256="1s2b8f43wi9ja966n2p2r4l4s79vk6xb8mqaxsagnw90g969p681"; depends=[coda numDeriv]; }; bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.3"; sha256="1480mmzfshchfbfh3x420cq5qblfh59jkl21hkq2jvnwppksdn9w"; depends=[coda mvtnorm]; }; - bayesGDS = derive2 { name="bayesGDS"; version="0.6.2"; sha256="0ash16hmassn76x3f59dfvp4plqp8vb17qzcwmag7vi3mi3y2ap6"; depends=[Matrix]; }; - bayesImageS = derive2 { name="bayesImageS"; version="0.5-3"; sha256="0whb3am92v95rhxnlpjl212jsy2r6pv35svj4lgl7p74300b25ra"; depends=[Rcpp RcppArmadillo]; }; + bayesImageS = derive2 { name="bayesImageS"; version="0.6-0"; sha256="1m0az3z8hwaxpqd1ljly9vlp41dp7c7p39r0rx7k9vcs201vlcg8"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="3.2-0"; sha256="1a3x3y77542hgndvymhnyg6dys0s5rimkgprl8psflsgsrxnbmcv"; depends=[bayesTFR car coda hett wpp2017]; }; bayesPop = derive2 { name="bayesPop"; version="7.0-0"; sha256="1ydr0hds09xa17117y9dvk2sym2jfk0yjip79dig9c2vsykns0cm"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2017]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; @@ -4853,6 +4857,7 @@ in with self; { bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; bayesdfa = derive2 { name="bayesdfa"; version="0.1.1"; sha256="0d08kx4qykfd7vyik0ac9w9sd5cflwbslq8gi7l64pwwil1hysk1"; depends=[BH dplyr ggplot2 loo Rcpp RcppEigen reshape2 rlang rstan StanHeaders]; }; + bayesdistreg = derive2 { name="bayesdistreg"; version="0.1.0"; sha256="04slvxzbqdi2ak3dlw4lfx55rhw28js8yjmvjpy8vvgq39vcx3dq"; depends=[MASS sandwich]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; bayeslm = derive2 { name="bayeslm"; version="0.8.0"; sha256="1gvqkbz1wmqkxjwkdgj5pir5j1qy5dzjm4jv6mz3mplm16z5vzbl"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; @@ -4863,6 +4868,7 @@ in with self; { bayesplot = derive2 { name="bayesplot"; version="1.6.0"; sha256="0in9cq2ybpa7njrwqx4l6nc8i01cjswsvzwlyiw465pi74aapr57"; depends=[dplyr ggplot2 ggridges reshape2 rlang]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; + bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; bayou = derive2 { name="bayou"; version="2.1.1"; sha256="17gvb2dmviwibnlqn6p3p9pcc3705xh9r8lrm90p0yg7nhm0cn02"; depends=[ape assertthat coda denstrip fitdistrplus foreach geiger MASS Matrix mnormt phytools Rcpp RcppArmadillo]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; baytrends = derive2 { name="baytrends"; version="1.0.7"; sha256="1l59w79n2l04n0i12ka1cvnnqsx9412b2fgsgp4pz5hsi5nswlp8"; depends=[dataRetrieval digest gdata lubridate memoise mgcv plyr survival XML zCompositions]; }; @@ -4906,20 +4912,21 @@ in with self; { beanplot = derive2 { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; beanz = derive2 { name="beanz"; version="2.4"; sha256="18i4ygz83l60fdfkl4yg9kp5n2vmqn6yd7qkpkiplq0mzg5s4nk9"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; beast = derive2 { name="beast"; version="1.1"; sha256="0ikbnzdzp2lv1nh5mxxanra81v4dl6svg3ywqcqd6wgzri70a4ry"; depends=[RColorBrewer]; }; - bedr = derive2 { name="bedr"; version="1.0.4"; sha256="052sn90gjr34hjgyndzvcl66pv22q0kjqbx95y1pdydiwhwmhpa3"; depends=[data_table R_utils testthat VennDiagram yaml]; }; + bedr = derive2 { name="bedr"; version="1.0.6"; sha256="0q790695h8bls0qw284n1zn7lxzym1dnnj095fsbjga2p116z4yv"; depends=[data_table R_utils testthat VennDiagram yaml]; }; beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; }; beeswarm = derive2 { name="beeswarm"; version="0.2.3"; sha256="0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"; depends=[]; }; beezdemand = derive2 { name="beezdemand"; version="0.1.0"; sha256="1i6p36cfvz87k6llpibklmdbjb7vp1v38ijxaqkmv1jzc28sj3cl"; depends=[ggplot2 nlmrt nls2 nlstools reshape2]; }; - beginr = derive2 { name="beginr"; version="0.1.3"; sha256="1wrxcgapan19p2zwvmrz9fg9hwkxfm0x2qcqkanmn0mmsaixhs3h"; depends=[cranlogs]; }; - behaviorchange = derive2 { name="behaviorchange"; version="0.0.2"; sha256="1g5r4mnqpls16836pi2dr7lm308c677m5j8xha6c12pnr39rnc4a"; depends=[data_tree DiagrammeR ggplot2 googlesheets gridExtra gtable magrittr ufs userfriendlyscience viridis]; }; - behavr = derive2 { name="behavr"; version="0.3.1"; sha256="18rpln7db8cnaj6f47vjgh7q2xbcjmd0vhfbmvm82fr7qhdnnyc0"; depends=[data_table]; }; + beginr = derive2 { name="beginr"; version="0.1.5"; sha256="09iknpmrw6jyi9hdcr0vd58vabd4nx30a7ag4jqy4sacp3zslymx"; depends=[cranlogs]; }; + behaviorchange = derive2 { name="behaviorchange"; version="0.1.0"; sha256="15yrkgbhmfns4jvjjcfgk74rh3k54m5x31s160cg3gw53q3frdka"; depends=[BiasedUrn data_tree DiagrammeR ggplot2 googlesheets gridExtra gtable magrittr ufs userfriendlyscience viridis]; }; + behavr = derive2 { name="behavr"; version="0.3.2"; sha256="01ny099m2zmvlalwiq3nqkgynnxn1mdspch15lkawwd40q8s9s4p"; depends=[data_table]; }; belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; belg = derive2 { name="belg"; version="0.2.3"; sha256="1ss40fxfmzld4fqpbkc3knsxdqc4nmllgvl2v4nyqzcalcknzvvf"; depends=[Rcpp RcppArmadillo]; }; bench = derive2 { name="bench"; version="1.0.1"; sha256="0hiwm3jbwr9wjdfx0nk3djskiw1q900h4acaqjgy97p8gl0ig3g8"; depends=[glue pillar profmem rlang tibble]; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; - benchmarkme = derive2 { name="benchmarkme"; version="0.6.0"; sha256="0w98q4b814bz3q0vqdfnwqrgfrky3ggsyyzmdiz17kv6xk17qds8"; depends=[benchmarkmeData doParallel foreach httr Matrix]; }; - benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.5.1"; sha256="0vv5d90qv81lwrgi5d3zbwlwxwjqlx70xi4ljhcc0ljv50x2rvv4"; depends=[]; }; + benchmarkme = derive2 { name="benchmarkme"; version="1.0.0"; sha256="1jslcz56m48rx64w80xxccdzhmqbpg2b81rp8i358mj9xjrasya9"; depends=[benchmarkmeData doParallel dplyr foreach httr Matrix tibble]; }; + benchmarkmeData = derive2 { name="benchmarkmeData"; version="1.0.0"; sha256="09d4rbqrxfr44x9c07rd11xmywvh7jw09v2ldfgq1xchcz3j5x0f"; depends=[dplyr tibble]; }; benchr = derive2 { name="benchr"; version="0.2.2"; sha256="1ls75pmhvj6d4wc9knifv6d1dfr0avfhry370m636mhfpw4z2ybf"; depends=[Rcpp RcppProgress]; }; + bender = derive2 { name="bender"; version="0.1.1"; sha256="07npksrj094h884lli0fjvwjc1lhcwzlsk9wx82761mka5xajv4v"; depends=[httr jsonlite R6]; }; benford_analysis = derive2 { name="benford.analysis"; version="0.1.5"; sha256="0y0c7l2r9s7lg9bw4ndcqwisa5l6a2cpydn1vmz88h3yva0l68cg"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-5"; sha256="1mzhqqy4dblwv70v1ky5gzrr3jyky9k4wibbp589jjjrga2vhq2a"; depends=[dplyr lazyeval readr]; }; @@ -4932,7 +4939,6 @@ in with self; { betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; betapart = derive2 { name="betapart"; version="1.5.1"; sha256="0j72rfvnn0ag6vxp8nw5v68n3qblyp5gd0y8z1kchs4dbq1v288g"; depends=[ape fastmatch geometry picante rcdd]; }; - betaper = derive2 { name="betaper"; version="1.1-0"; sha256="1gr533iw71n2sq8gga9kzlah7k28cnlwxb2yh562gw6mh1axmidm"; depends=[ellipse vegan]; }; betareg = derive2 { name="betareg"; version="3.1-1"; sha256="07cblxprybqkv55805za6qg47vw95azxn4446frxwkramza4ygv2"; depends=[flexmix Formula lmtest modeltools sandwich]; }; betas = derive2 { name="betas"; version="0.1.1"; sha256="1v85r6lrk21viwzam42gi42bgbwh5ibn3dpbh3aqrf3dnn1rdsyd"; depends=[robust]; }; betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; @@ -4941,24 +4947,25 @@ in with self; { bezier = derive2 { name="bezier"; version="1.1.2"; sha256="1vw5128v8h973xwa1fdm9cw2jvrldj87nd55lddlp3qsz3ag4br6"; depends=[]; }; bfa = derive2 { name="bfa"; version="0.4"; sha256="08n6446xl2w8z0rsqi6v2hp9cp744frxw6vrbxg5cpybhyyfzr36"; depends=[coda Rcpp RcppArmadillo]; }; bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-39"; sha256="1g3sbmi1yl7ai8v6a2ri54jqv64wzfy580s8i1w9xwbqjcrpj77m"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-40"; sha256="03risiq2b7bc3gwlgpcsy1gvja6n5w1j3kw13s2wrd420hddzk4s"; depends=[Rcpp]; }; bfsl = derive2 { name="bfsl"; version="0.1.0"; sha256="1hl53nis8bb1ffgkx91ij9vh680cpkb80y548y67y9w18iyd4aw4"; depends=[]; }; - bfw = derive2 { name="bfw"; version="0.3.0"; sha256="0kmyr77hp5vs41f8w7arcyxvhwhkbhdiq4v88ch7h822byfiwlzq"; depends=[coda MASS runjags]; }; + bfw = derive2 { name="bfw"; version="0.4.0"; sha256="11n1f5sb4fyc18fqj838kbjh96waz9kk2fdvvakslxwvg415nxk9"; depends=[coda MASS runjags]; }; bgeva = derive2 { name="bgeva"; version="0.3-1"; sha256="0qm4xknyab8hdyn3in2hsvm8s062cnmqqf41b5jvax1mi5hs0z8c"; depends=[magic mgcv trust]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.8.3"; sha256="09hsqjjyzlpl0fqb7832j5ydrr0yc42zb1c9q1y5hbrms7yp00p8"; depends=[car combinat lattice mvtnorm]; }; - bgsmtr = derive2 { name="bgsmtr"; version="0.3"; sha256="01v40mla6ly1g4yfzc6vn1i62psabsj0dzvypc8a5va9sz96x2vy"; depends=[coda EDISON inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod TargetScore]; }; + bgsmtr = derive2 { name="bgsmtr"; version="0.5"; sha256="1yqj3761zs64kdh63vaz6glpv65i3ji8fi51nqq8wlggak0zklnx"; depends=[CholWishart coda EDISON inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod]; }; bhm = derive2 { name="bhm"; version="1.13"; sha256="1iq1hjc7xn2kmmxgzv6mzcvvf48kqp5b8lavmzrqykak3v4z02nz"; depends=[coda survival]; }; - bhrcr = derive2 { name="bhrcr"; version="1.0.2"; sha256="15c04vknhm8350xylixapb8nw5va0i02a5s5832fsfcndlqr4cpj"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; }; + bhrcr = derive2 { name="bhrcr"; version="1.0.3"; sha256="1w52f4ghl328vdcr8hwvmdrnxnj45fy4r21yqzg5q1fpd4mpjw2i"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="1.0.1"; sha256="1rprcnqvs4nicd26h34kpgzlpl22430dikxs2q1sjf861qachi10"; depends=[dplyr httr humaniformat stringr]; }; - bibliometrix = derive2 { name="bibliometrix"; version="2.0.2"; sha256="12588054l6hsn8091559v42apc66g9zpfnhnk96ai56whglfjx5s"; depends=[dplyr DT factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix networkD3 RColorBrewer RISmed rscopus shiny shinycssloaders shinythemes SnowballC stringdist stringr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="2.1.0"; sha256="18mpm9imdj4pqd0pb04srqvy26j8sxdj48mpi74gllgw69wkcyjj"; depends=[dplyr DT factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix networkD3 RColorBrewer RISmed rscopus shiny shinycssloaders shinythemes SnowballC stringdist stringr]; }; bibtex = derive2 { name="bibtex"; version="0.4.2"; sha256="0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"; depends=[stringr]; }; biclust = derive2 { name="biclust"; version="2.0.1"; sha256="1y5n6wfa1lx88ck3x09rcg0dh3pw89225h85hmq2la1s1fpa48i0"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; bife = derive2 { name="bife"; version="0.5"; sha256="0lzij8sazfdr687bi5lfp5ndvwlx18vyzr3svc0zv9mnv8s8vfvd"; depends=[Formula Rcpp RcppArmadillo]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; bigIntegerAlgos = derive2 { name="bigIntegerAlgos"; version="0.1.2"; sha256="1cbcxwhb25ismiyr95pfgc7nq14p4srd9y8y3g3xz0ywjs0qnjy5"; depends=[gmp]; }; bigKRLS = derive2 { name="bigKRLS"; version="3.0.0"; sha256="043lm32cams2hc0fg1mvq08r4ippy4s5z62n1616vndfmqsn41v8"; depends=[BH bigalgebra biganalytics bigmemory ggplot2 Rcpp RcppArmadillo shiny]; }; + bigMap = derive2 { name="bigMap"; version="2.0.0"; sha256="0dvvv3gdb5pvq8n623a14amn9zi54702mk9r4cj5ja4457xai9al"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.4.0"; sha256="1b89yfa0gwd3frdh1z6ygxv2dfncb6g4lp67nh7hkm6r9xamfrxr"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigalgebra = derive2 { name="bigalgebra"; version="0.8.4.1"; sha256="19j5f7d6yf9g0glybdwahj7n0mrgbxrbdajh7s30v25fkmm36r2z"; depends=[BH bigmemory]; }; @@ -4975,7 +4982,7 @@ in with self; { bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; bigml = derive2 { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[plyr RCurl RJSONIO]; }; bigreadr = derive2 { name="bigreadr"; version="0.1.3"; sha256="1cdr7i8y7bvhfajs3bmxlljbda2922dgbiwkkyxn2k5cn384plak"; depends=[data_table fpeek Rcpp]; }; - bigrquery = derive2 { name="bigrquery"; version="1.0.0"; sha256="0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis"; depends=[assertthat curl DBI glue httr jsonlite prettyunits progress rapidjsonr Rcpp tibble]; }; + bigrquery = derive2 { name="bigrquery"; version="1.1.0"; sha256="0h2nzyn1w0padpl61l467j7vlkc2wair7sh6p26p94z4zfsnv0i1"; depends=[assertthat bit64 curl DBI glue httr jsonlite prettyunits progress rapidjsonr Rcpp tibble]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="0.6.2"; sha256="1dv6615yn26lpqj4nswji74zp4zjp6j5m1n0h1h3jffdh7xai46d"; depends=[BH bigreadr cowplot doParallel foreach ggplot2 Rcpp RcppArmadillo RSpectra]; }; bigstep = derive2 { name="bigstep"; version="1.0.0"; sha256="1bkh7a4qzvh567qglkyidlfam5qj33aih9k8ndxj2ng6dcq38lbd"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; @@ -4983,10 +4990,10 @@ in with self; { bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; }; bigtime = derive2 { name="bigtime"; version="0.1.0"; sha256="136gy2i4qwa2drklllyzp3z0dbijlavgf3sxy73bf84df2yq1c9i"; depends=[corrplot lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; bikedata = derive2 { name="bikedata"; version="0.2.2"; sha256="02qwi0rdrg6pmimfqc9y2nkb9l9aks8zxgqz9paqyr2b2psib7ym"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; }; - bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; }; + bikeshare14 = derive2 { name="bikeshare14"; version="0.1.2"; sha256="1sib83driqv9k4aa131nw3xasslrxvnxkn3mr8kxycxccky025n9"; depends=[]; }; bild = derive2 { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; - billboarder = derive2 { name="billboarder"; version="0.2.4"; sha256="0y4rcrcdi8jfp5dha4vzvr5d0rq73wlbvszb517bdwgg4cgh2hgq"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr scales]; }; + billboarder = derive2 { name="billboarder"; version="0.2.5"; sha256="0sn2gcgjpd72avysy6lsnj18z04gyjjahyjlm80mla6s0jxydr9c"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr scales]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; @@ -5003,7 +5010,7 @@ in with self; { bingat = derive2 { name="bingat"; version="1.3"; sha256="1y68rgafipfad78yrzcygdszgy1d5q739kap06pzr78bn3i8hiwa"; depends=[doParallel foreach gplots matrixStats network vegan]; }; binhf = derive2 { name="binhf"; version="1.0-3"; sha256="1vdw2s8zddp7gad8l3c4jpmnjcc0f5wpqbrp6gp9lgp1c3qa505y"; depends=[adlift EbayesThresh wavethresh]; }; binman = derive2 { name="binman"; version="0.1.1"; sha256="0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; - binneR = derive2 { name="binneR"; version="2.0.5"; sha256="0vmfj9fwpscfakjl5dz4089k24y5qw2a7i0sdgg85ggyil5d2rb3"; depends=[cli crayon dplyr ggplot2 ggthemes lubridate magrittr mzR plyr purrr stringr tibble tidyr]; }; + binneR = derive2 { name="binneR"; version="2.0.7"; sha256="1d5mki4iszlh7053c3jnv2fb6l9dag09l643hrhyl38csjjr6dd0"; depends=[cli crayon dplyr ggplot2 ggthemes lubridate magrittr mzR plyr purrr stringr tibble tidyr]; }; binnednp = derive2 { name="binnednp"; version="0.2.0"; sha256="1dklymwsz0l0xklmvq34mf11chd2hm91r5qa031zjf1hsm3gplh8"; depends=[fitdistrplus kedd mclust nor1mix Rcpp Rdpack]; }; binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; binomSamSize = derive2 { name="binomSamSize"; version="0.1-5"; sha256="1an6dcqsjh5r0w4kc3n6yfvvha5qhrb2i4bpf7g5ykhl3i60zfcc"; depends=[binom]; }; @@ -5018,7 +5025,7 @@ in with self; { bioOED = derive2 { name="bioOED"; version="0.1.4"; sha256="1rjcqrni5xag97pxfsf40isr2c8pkqsvihf86phak8ngwl7qdgmc"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; bioRad = derive2 { name="bioRad"; version="0.4.0"; sha256="100b1fz7dxpvsc452r4yvd4g6gmzz80pvw1l0sp6g4310gyzs2fb"; depends=[curl fields ggmap ggplot2 maptools raster rgdal rhdf5 sp]; }; - bioacoustics = derive2 { name="bioacoustics"; version="0.1.6"; sha256="1q3sddqbx75hwncrzl3bfx6kagmcf3kqki5k8dig1gj3zk9bmqyl"; depends=[htmltools moments Rcpp stringr tuneR]; }; + bioacoustics = derive2 { name="bioacoustics"; version="0.1.7"; sha256="1p2w84pj0cc8m85qz6r83621jr4y5l00jzh0sfx70y1204m0rzdj"; depends=[htmltools moments Rcpp stringr tuneR]; }; biofiles = derive2 { name="biofiles"; version="1.0.0"; sha256="1bglgl2jcp6jy3f7xwndil56i98xx4kn518s3fqdixw7n5ibmqd2"; depends=[assertthat BiocGenerics Biostrings foreach GenomeInfoDb GenomicRanges IRanges iterators Rcpp RCurl reutils S4Vectors XVector]; }; biogas = derive2 { name="biogas"; version="1.10.3"; sha256="1qfidjwhaxg5zplzkldhj4zqg81xrcqmvh9x5km5yhyymzr6y4vs"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; @@ -5051,6 +5058,7 @@ in with self; { bit64 = derive2 { name="bit64"; version="0.9-7"; sha256="07znvz9vp1nz1y5ljng4qyskvm943cdbmy996s67560ijxzsm6kv"; depends=[bit]; }; bitops = derive2 { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; }; bitrugs = derive2 { name="bitrugs"; version="0.1"; sha256="0sqgp05b902mdldr4ckz4knmkbsqvgl1vx0l792cn2r437yqlgp3"; depends=[]; }; + bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.0"; sha256="0vl6d6pyb0v634l5n1zbkbkv73swx0pcgw5lvbdcf368b3hwlhk2"; depends=[]; }; biva = derive2 { name="biva"; version="0.1.0"; sha256="1vppvk2n60hhi7p8y8rdyckmh4yk70wqyhbg7rbgh833s66whypw"; depends=[corrgram rpivotTable shiny shinyAce]; }; bivarRIpower = derive2 { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; }; bivariate = derive2 { name="bivariate"; version="0.3.0"; sha256="0g574raxzh2l6p8zf4mv8qdsbl0r10x2d6zsbjc79xggizlc1j9d"; depends=[barsurf KernSmooth mvtnorm]; }; @@ -5064,7 +5072,7 @@ in with self; { blackbox = derive2 { name="blackbox"; version="1.1.25"; sha256="1xjljxvh8jg5gnfwdb6f8ifn5s30dxjlnbal97kinq0ad33lvs48"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; blastula = derive2 { name="blastula"; version="0.2.1"; sha256="1w9g858c6p7qzv86pfndycvpgv6k63r85wlq11249mi2zqzvh7rl"; depends=[commonmark downloader dplyr ggplot2 glue htmltools httr magrittr stringr tidyr]; }; - blavaan = derive2 { name="blavaan"; version="0.3-3"; sha256="1n3f8qh0ircsm0qdz3ifdri048vhpy1mkacrsx0iqrilq557v6k7"; depends=[coda lavaan loo MCMCpack mnormt nonnest2]; }; + blavaan = derive2 { name="blavaan"; version="0.3-4"; sha256="01a5mf5gmkgxpa79hg3lhrg1ywlggpy07552dmjsai07j05wrc84"; depends=[coda lavaan loo MCMCpack mnormt nonnest2]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; }; @@ -5079,14 +5087,15 @@ in with self; { blockcluster = derive2 { name="blockcluster"; version="4.3.2"; sha256="15xp4navipxcr2pqxnxc47b0ifdazcsdkn5kmay883vzqj8c1nrb"; depends=[Rcpp rtkore]; }; blockingChallenge = derive2 { name="blockingChallenge"; version="1.0"; sha256="0zj649gj4djdl0wly3gh99ayk1i1rk5dawcrrlzxxh56xqf4l19i"; depends=[]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; - blockmodeling = derive2 { name="blockmodeling"; version="0.3.1"; sha256="0cbx44mg5b9w1sz32wsgjprbss4mfx79sn6m42lvminf0023ds1r"; depends=[doParallel doRNG foreach Matrix]; }; + blockmodeling = derive2 { name="blockmodeling"; version="0.3.4"; sha256="11v9903y9dwlzaqp8sx0fsibcg82phvappddy37r8lnxd4vchsd2"; depends=[doParallel doRNG foreach Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; }; - blocksdesign = derive2 { name="blocksdesign"; version="3.2"; sha256="1a9aa1jvh0i5106w5hkx5h285cgx1kd6vf96fqxfvn3daaps14kl"; depends=[crossdes lme4 plyr]; }; + blocksdesign = derive2 { name="blocksdesign"; version="3.3"; sha256="15f6fxz5xlm5m5wppc4v1a05nk6cb4h4xzbkcv67mpv24bqrvfbs"; depends=[crossdes lme4 plyr]; }; blockseg = derive2 { name="blockseg"; version="0.5.0"; sha256="1zc6mvkdwjz7n0yj46c610gz2d3rwsjchbzdcg7k56j06vc9w4lp"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 shiny]; }; - blogdown = derive2 { name="blogdown"; version="0.9"; sha256="1ps07zrr0zzp763hrfhqrmc927cl97v7l1r617s1lqhxwcji1fkx"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="0.10"; sha256="1wm51qbk7s6zq5qzcwgjiwwij4m5mhp8769rxyg2s5z3xaxkvhdd"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.2.0"; sha256="1jnhkqja0wn5f9mx6mzmx65zb2ablbq1902vfxv810q8igxaikvl"; depends=[car caret checkmate cli clisymbols crayon dplyr e1071 ggplot2 glue gridExtra magrittr purrr Rcpp rlang scales shiny tibble]; }; blsAPI = derive2 { name="blsAPI"; version="0.2.1"; sha256="0p45g4qqaialh5m9bxgrvnc7nqmm0429syw0bml8h4h8vy4014a7"; depends=[httr rjson]; }; + blscrapeR = derive2 { name="blscrapeR"; version="3.1.6"; sha256="0p1lwl3zlah0x9jwvd7qmh8q3ynqz48wj6xvzyj7c9rl0iq2ws5x"; depends=[dplyr ggplot2 httr jsonlite magrittr purrr stringr tibble]; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; bmem = derive2 { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia lavaan MASS sem snowfall]; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; @@ -5112,29 +5121,29 @@ in with self; { bold = derive2 { name="bold"; version="0.8.6"; sha256="0ph1a6gnw10yccvv8cn3rq32nch3wa6w6a7k2h46qin0fsps55y6"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; bomrang = derive2 { name="bomrang"; version="0.4.0"; sha256="16rc60pzphbxmijff5rk3vp8ara9vy1bk48m55drpqqdc3sbc0g3"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite lubridate magrittr raster readr rgdal rvest tidyr xml2]; }; bookdown = derive2 { name="bookdown"; version="0.9"; sha256="0vg1s1w0l9pm95asqb21yf39mfk1nc9rdhmlys9xwr7p7i7rsz32"; depends=[htmltools knitr rmarkdown tinytex xfun yaml]; }; - bookdownplus = derive2 { name="bookdownplus"; version="1.5.4"; sha256="17jkrrc5m34gnhv0zvbdw82mqv3gna6g1z530gc2cwjc27sa7sza"; depends=[bookdown]; }; - boostSeq = derive2 { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; }; + bookdownplus = derive2 { name="bookdownplus"; version="1.5.5"; sha256="0rnl0x1impgx9y7py8ji62smdq36n3ijqa67vv9ynqlszb4q5id7"; depends=[bookdown]; }; boostmtree = derive2 { name="boostmtree"; version="1.3.0"; sha256="0q1lgjvbc15m2gygnmh63m0wy2c6x25iwrh9cbn0baq598hnr7j9"; depends=[nlme randomForestSRC]; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; boot = derive2 { name="boot"; version="1.3-20"; sha256="0ai1qpm0p4z07xr0dvag8sdn9jrxcwanrsk9khzmww094jvr1jxd"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; }; - bootLR = derive2 { name="bootLR"; version="1.0"; sha256="1asf4yxy3abfkgqqg89mv9r2iifc5bgcjipy5idni0lvwfjashnd"; depends=[boot]; }; + bootLR = derive2 { name="bootLR"; version="1.0.2"; sha256="1aj5l42d5y7czxzlg6r9ykdxyjf8m8bahl41xk4k6xpxckdnka14"; depends=[binom boot]; }; bootRes = derive2 { name="bootRes"; version="1.2.4"; sha256="1lzj154qqqxqg6q2bjnzba8hlcx473i9cpp8kkjkpy7k87fgpm7v"; depends=[]; }; bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; bootcluster = derive2 { name="bootcluster"; version="0.1.0"; sha256="1mx08p0csz06mq55bdg4vgnqa9khdgqrz4jnm48c24pg8rpaj98b"; depends=[cluster flexclust fpc mclust plyr sets]; }; - bootnet = derive2 { name="bootnet"; version="1.1.0"; sha256="12r9xbsixj8bxjgn1cn0y2zvxmcllmz15cyflf7vnhn8lrphx309"; depends=[abind BDgraph corpcor dplyr ggplot2 graphicalVAR gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox parcor pbapply psych qgraph relaimpo tidyr]; }; + bootnet = derive2 { name="bootnet"; version="1.2"; sha256="07p5hri73v3k30v61kqdilwdclgb1afiv3f9qb7x0mi23jzcgjq7"; depends=[abind BDgraph corpcor dplyr ggplot2 graphicalVAR gtools huge igraph IsingFit IsingSampler lavaan Matrix mgm mvtnorm NetworkToolbox networktools parcor pbapply psych qgraph relaimpo tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; }; + bootstrapFP = derive2 { name="bootstrapFP"; version="0.4.2"; sha256="16qgj6bnwvyvwl4kcpxyq75hgp7prkfdkr3yrp8hj8n5vsj04jln"; depends=[sampling]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; bor = derive2 { name="bor"; version="0.1.0"; sha256="1r5jacmin0cq9zipxa9nmp3jnh6wsddd4wnzw2n5sggnf24ryp8g"; depends=[]; }; boral = derive2 { name="boral"; version="1.7"; sha256="0li7jdzgq2ffhrf0nly96syp72vv3c6rbcni19kk2wgyv16mjwcm"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boxcoxmix = derive2 { name="boxcoxmix"; version="0.21"; sha256="0pav4nksh1zbic11l38jyyq8i58hfvwzkp88ra6nny3jn2axzipl"; depends=[npmlreg qicharts statmod]; }; - boxoffice = derive2 { name="boxoffice"; version="1.2.0"; sha256="13w167swn9dgbmpb5j2db6b67lvrplzk4jqk13skc4wqc7jf9hp8"; depends=[httr rvest]; }; + boxoffice = derive2 { name="boxoffice"; version="1.2.1"; sha256="0yl7xfcb0dr0pbkrrbbm2mx4f43fikw0zf6ckp6vwbi7p7v2w98y"; depends=[httr rvest]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.4"; sha256="0wx3x65rk1ma8bw5h4yskr7ii95ynkm7il22l1bj34kv9f4bfyj3"; depends=[assertthat bit64 digest dplyr httpuv httr mime rio stringr]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; @@ -5165,7 +5174,7 @@ in with self; { breathteststan = derive2 { name="breathteststan"; version="0.4.7"; sha256="0lvyp3524cha6ckfx2c25829ys1g97xhjc3mi5cmdbfg8zfgcy58"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; }; brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.6.1"; sha256="17r3az6za98v2r06aak77kypdaqssc9wxcc6m6vb20y7xm8dp1mp"; depends=[profileModel]; }; - brglm2 = derive2 { name="brglm2"; version="0.1.8"; sha256="017m7nlh29p271dhvx19l6042qfs48hqs947kjmpc7ykzv5461y3"; depends=[enrichwith lpSolveAPI MASS Matrix nnet]; }; + brglm2 = derive2 { name="brglm2"; version="0.5.0"; sha256="0smc12klq0mfs5dr74vgc7if8irc82kvzdzbkqgbzdic75yvgnvr"; depends=[enrichwith lpSolveAPI MASS Matrix nnet numDeriv]; }; bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="0.6-0"; sha256="1526lsqhgjh0v8jb2sb7rw9jxj2kkbidsqapqp309a2f05bsfb8p"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; @@ -5189,26 +5198,28 @@ in with self; { bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.1"; sha256="0s3407z48b7sdbkjkqcjk2j1wvs0z7chvdjzphil83l0vp3j5x0s"; depends=[glue htmltools lubridate magrittr purrr rmarkdown stringr]; }; - bspmma = derive2 { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; + bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bssm = derive2 { name="bssm"; version="0.1.6-1"; sha256="0q0928pqbwz4yrh23mri04xncp0q4jz765scc7mm4jjdda3wq50r"; depends=[BH coda diagis ggplot2 ramcmc Rcpp RcppArmadillo sitmo]; }; bssn = derive2 { name="bssn"; version="0.7"; sha256="1g2xhb7bqapwd5zbc4bl4h1fskd7k6gd0rz74hnydiiwxrwiihf6"; depends=[sn]; }; - bst = derive2 { name="bst"; version="0.3-15"; sha256="02378s18g0asmx00rghmqm5gb4dml530aln8r141f6wxgn9711fh"; depends=[doParallel foreach gbm rpart]; }; + bst = derive2 { name="bst"; version="0.3-16"; sha256="0a0fas4fspmr34gk4i0hy9n9r9qqvb38b58q4cd203373iny75i1"; depends=[doParallel foreach gbm rpart]; }; bsts = derive2 { name="bsts"; version="0.8.0"; sha256="06v8x2wgasbh00vvwn859y6rqp7z5ib43vvhh9qdkkrmdz4gw6sr"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; btb = derive2 { name="btb"; version="0.1.30"; sha256="1f94zzpg3q6ldd436cv1wqpfbpw5f706073wk38a4dkg57dwrbgi"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; }; btergm = derive2 { name="btergm"; version="1.9.3"; sha256="0nailhw4n9rqqv1i2l41qz4gx0mr7viycdmd4kc00gm3nk4721gp"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm texreg xergm_common]; }; bucky = derive2 { name="bucky"; version="1.0.5"; sha256="0xn92dnhrs8810f8kvn2dnig0icd1k4dkxljmldij6dn8xb7c85q"; depends=[lmtest sandwich]; }; - bujar = derive2 { name="bujar"; version="0.2-3"; sha256="0gc5wrnhark1gawl4qqjh179xaxjal5r7qq4ilx30yn3qhzrqdaz"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms]; }; + bujar = derive2 { name="bujar"; version="0.2-4"; sha256="1s59wnd9qvwhd89mh75i5mhxwazvccfz84w3kfdrbq7g5pw73v7m"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bullwhipgame = derive2 { name="bullwhipgame"; version="0.1.0"; sha256="03nwf2v4zhgkxvkghpkbkxz0cnkqcwwl51ykrk25qciakfqkgfws"; depends=[shiny]; }; bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; bupaR = derive2 { name="bupaR"; version="0.4.1"; sha256="0gf9qzk826zq15w8fl9skg1kpmz0s87k5l1rs45ggdwg49q5pq48"; depends=[data_table dplyr eventdataR forcats glue magrittr miniUI purrr rlang shiny tidyr]; }; - burnr = derive2 { name="burnr"; version="0.2.2"; sha256="1b5ys0jm2dmiz1jd5f3907dhv44wh60kmfdfhj3fzx8rk7zllm06"; depends=[ggplot2 MASS plyr reshape2]; }; + burnr = derive2 { name="burnr"; version="0.3.0"; sha256="1pps4q83sbmx52zl4ja83v89cq012zzhhjmha8vksfh769kr2v07"; depends=[ggplot2 MASS plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; + busdater = derive2 { name="busdater"; version="0.2.0"; sha256="0hib73zay9r7rv49zv1lx0l15jzjyli9f1vrk414l8apggvx4c6s"; depends=[lubridate]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; bvpSolve = derive2 { name="bvpSolve"; version="1.3.3"; sha256="1q5sh3kj1c07zq7mx8sh4ggp1fvwh86394qrc3ildj4wrbakmzib"; depends=[deSolve rootSolve]; }; + bwd = derive2 { name="bwd"; version="0.1.0"; sha256="1ryd5cqbpns9dsis2a9vjg6fcg23284c3dr3j3l18krdshdksfr0"; depends=[]; }; bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; c060 = derive2 { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; c14bazAAR = derive2 { name="c14bazAAR"; version="1.0.2"; sha256="03siiadhj8wp80jhm99lw7xb1p24yk9ycx2kp085a7xj82hl22jj"; depends=[crayon data_table dplyr magrittr pbapply RCurl rlang tibble tidyr]; }; @@ -5216,11 +5227,12 @@ in with self; { c2c = derive2 { name="c2c"; version="0.1.0"; sha256="149np512wjnlr9glmqxpiamf6c31v0bh6ym95jpdhk0iw3ic9kvh"; depends=[]; }; c3 = derive2 { name="c3"; version="0.2.0"; sha256="1af4lrgck1bff8jjp9vwyw2rpq54d1ng13rpcqlf58asdja29s9h"; depends=[data_table dplyr htmlwidgets jsonlite lazyeval viridis]; }; c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; - cAIC4 = derive2 { name="cAIC4"; version="0.6"; sha256="0najx0gpi31rzkg3qdhmwwg8797nazmkdrv56b12a1cndlbb70x2"; depends=[lme4 Matrix]; }; - cIRT = derive2 { name="cIRT"; version="1.2.1"; sha256="1i43pqlyzykyd1a6abg1yi7ai9ay7d2jkvnw1sa4c6q07jk56d89"; depends=[Rcpp RcppArmadillo]; }; - cNORM = derive2 { name="cNORM"; version="1.1.2"; sha256="0al0kbl8ncb41jlqqfj6i0fq3ll0clpks1m81hihkcj16rbrx03z"; depends=[lattice latticeExtra leaps rmarkdown]; }; + cAIC4 = derive2 { name="cAIC4"; version="0.7"; sha256="149brvizsx0sw3rldimnj6qh08hv05v1bhgrryyziis2n0afxsir"; depends=[lme4 Matrix]; }; + cIRT = derive2 { name="cIRT"; version="1.3.0"; sha256="0jbjkmzw3z935pq12k5kmy3vdpqlpm70siv8f0bnlw42sai1qcw1"; depends=[Rcpp RcppArmadillo]; }; + cNORM = derive2 { name="cNORM"; version="1.1.5"; sha256="1ils9r11lgg3gk844yhcjgx421i99wfv08svy93js39n2dzmfmmi"; depends=[lattice latticeExtra leaps]; }; cOde = derive2 { name="cOde"; version="0.4.1"; sha256="1hvanmbnmkrly2s3c57r2xc0w56a4jxspc15ncfzdx94k6mvnhxq"; depends=[Rcpp RcppArmadillo]; }; - cRegulome = derive2 { name="cRegulome"; version="0.2.0"; sha256="1i5f5c2mc66gjh5dh883x9ghpnam6zva8s6y5vdy6wyih0x2r9yn"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; + cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; + cRegulome = derive2 { name="cRegulome"; version="0.3.0"; sha256="0h850xqa6wi03gvq5cvah0mkap92q44cc925nx6fw88y8sna3p3x"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; ca = derive2 { name="ca"; version="0.71"; sha256="1ywqvj0rc9ss7yim4x09yf6l80xz4y6ggl56m0c1hc9x6wxna7h2"; depends=[]; }; caMST = derive2 { name="caMST"; version="0.1.0"; sha256="1xb8ka2r729sqwxhxh5qj4girh0va0faqjv1jsyn3hlbijcz78jj"; depends=[catR mstR]; }; caRamel = derive2 { name="caRamel"; version="1.0"; sha256="0al4yk77a4bh8rjdpl841bnnjvs0sjyxqswqwik1n6y0bfr8f7pl"; depends=[geometry]; }; @@ -5246,8 +5258,8 @@ in with self; { cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-0"; sha256="0hq5bwvq791rhff2c29xdjbbkcyydii1lbsy05c1fapyn88ir0mi"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="0.1.1"; sha256="14g7wl4p9bgwf5jm48mp676z0pwlsd2xgxjwzixri7mxxh0ivfh1"; depends=[CHNOSZ xtable]; }; - cansim = derive2 { name="cansim"; version="0.2.2"; sha256="1id6kcjls5w4lsqid8vlsp1pp927cvfhnjdaxq8xl1ww87a18xxl"; depends=[dplyr httr jsonlite purrr readr rlang rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.21.6"; sha256="1sv3vz08nfn69iymr99gsyn9si8w701s0qwqhh3bv4f4kyd9vmby"; depends=[htmlwidgets httr]; }; + cansim = derive2 { name="cansim"; version="0.2.3"; sha256="1486fz24dl47kv545zbx2swh7p396rcydzlnwd8g2g3dap93qk59"; depends=[dplyr httr jsonlite purrr readr rlang rvest stringr tibble xml2]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.22.9"; sha256="1cqxq8p4yvg4mi4w3s5q5lkfa6dhxb3kr4y27dqmifvrisvygja5"; depends=[htmlwidgets httr]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="2.0.2"; sha256="0ngm9scd3f2zcy7gy0lqk05cgbfrhhcss3mj5g6bj0byhgwd7msn"; depends=[corpcor doParallel evd fdrtool foreach HardyWeinberg igraph Matrix qpcR RColorBrewer regress shape]; }; caper = derive2 { name="caper"; version="1.0.1"; sha256="0md0sngj7wsv2d4d7fmyyz9qqismk3ps9l3qk1blqz1yi19pq124"; depends=[ape MASS mvtnorm]; }; @@ -5260,7 +5272,7 @@ in with self; { car = derive2 { name="car"; version="3.0-2"; sha256="0l3wyc9ia0ypcbap2p39slazfpbl84mjzydqvpsywrzdiyxajnfz"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; }; carData = derive2 { name="carData"; version="3.0-2"; sha256="152lfgaspgx6x2wzdb5p3zv6r87a0d2pg10h6fjmdr613kzlwp1v"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; - carbonate = derive2 { name="carbonate"; version="0.1.0"; sha256="0p1l84vmcn1jiwnw6s9ysbbag2zxb2qiwx2kb4ghkxrhycid1p9n"; depends=[clipr httr magick R6 RSelenium rtweet wdman yaml]; }; + carbonate = derive2 { name="carbonate"; version="0.1.1"; sha256="06fmckj3dxngrbx3r94pz9xgsxypw1028wp9cglj5fc8wv12viis"; depends=[clipr httr magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; }; @@ -5268,25 +5280,26 @@ in with self; { careless = derive2 { name="careless"; version="1.1.3"; sha256="07yq6sfp110pkd3khfn8ajdqz2r4ipcs90mpaiynh12xl0n67x7k"; depends=[psych]; }; caret = derive2 { name="caret"; version="6.0-81"; sha256="1fibrskjzq2f06b8gbrfp3263svfc5s5apsjwaqdg9qzs7sy7fpc"; depends=[foreach ggplot2 lattice ModelMetrics nlme plyr recipes reshape2 withr]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.0"; sha256="0v9gyp81abrbm8b79ch927iqh0v84q5222bvg1wx8n65vx59sx42"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; - carfima = derive2 { name="carfima"; version="2.0.0"; sha256="1h1i1g2ii3803z9i7ki50ahm7k8m92z3653sd4nz24xmr73w5xr5"; depends=[cubature DEoptim MASS numDeriv Rcpp RcppArmadillo Rdpack]; }; + carfima = derive2 { name="carfima"; version="2.0.1"; sha256="0nzwf4x59vfv5idfdcghizipjlg33v6d8scxm8rh7pxnfbc1jp56"; depends=[cubature DEoptim invgamma MASS numDeriv Rcpp RcppArmadillo Rdpack truncnorm]; }; caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; - carpenter = derive2 { name="carpenter"; version="0.2.1"; sha256="1f6g85qgd53wzha8kfq8x29lb5wilgxm6bj49znzd1qj03nlnpna"; depends=[dplyr lazyeval magrittr pander tidyr]; }; + carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartogram = derive2 { name="cartogram"; version="0.1.1"; sha256="171zw3h38iyxy70wz7yqhnivjx6kf1srj97dfmlkxyhz1ppyk38w"; depends=[packcircles rgeos sf sp]; }; cartography = derive2 { name="cartography"; version="2.1.2"; sha256="0rh97byxrmnd8wkq190zjql41zkvhzmhjg1s0nscrwjassmp4sqp"; depends=[classInt raster Rcpp rgeos rosm sf sp]; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; - caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; }; + caschrono = derive2 { name="caschrono"; version="2.1"; sha256="0p103r6v37c4li1j9x5mdflhx24zil8nhgpdvw5ijrvyixds0nn2"; depends=[Hmisc zoo]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; }; casebase = derive2 { name="casebase"; version="0.1.0"; sha256="0216qzyxv44cl9f806lal9lx4n0zzr9csx8ggyjva04h5iiqrq6w"; depends=[data_table ggplot2 survival VGAM]; }; + casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; castor = derive2 { name="castor"; version="1.3.4"; sha256="0ghbxh9n8189wzif5v941iax775yq0n7rkhw98wx3wklwn75ijv4"; depends=[naturalsort Rcpp]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; catR = derive2 { name="catR"; version="3.16"; sha256="1w39dxfzqk065v64qzmfamx8p1njsv13a461s6clagbqmhysmzbx"; depends=[]; }; catSurv = derive2 { name="catSurv"; version="1.0.3"; sha256="1qjmjdmc81inim5kpwh4k2r3cffmkyp2wpcqqzv731hciqrad8a8"; depends=[BH ltm Rcpp RcppArmadillo RcppGSL RcppParallel]; }; catch = derive2 { name="catch"; version="1.0"; sha256="16gdjrmlsnpyc38fihggj6c7wpgpmf4phcwrimnncdhwlk038yn8"; depends=[MASS Matrix tensr]; }; - catchr = derive2 { name="catchr"; version="0.1.0"; sha256="1rz8m8f934y3ksjrkapmzpc2jp03g0vaimi3hs9ky2axzs85idki"; depends=[]; }; + catchr = derive2 { name="catchr"; version="0.2.0"; sha256="132mldi195xx0ywmms6fc9dgj2s9nyb1i1b39yry3kl5gvxmd07s"; depends=[purrr rlang]; }; catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; catdap = derive2 { name="catdap"; version="1.3.4"; sha256="0i877l61f6c75pczi235rzci67w29zv1d7z5zn5p5ymndclvlpl2"; depends=[]; }; catdata = derive2 { name="catdata"; version="1.2.1"; sha256="0fjylb55iw8w9sd3hbg895pzasliy68wcq95mgrh7af116ss637w"; depends=[MASS]; }; @@ -5296,6 +5309,7 @@ in with self; { catlearn = derive2 { name="catlearn"; version="0.6"; sha256="1dh6svlnvxq1a8sv72wdwsgzd72kgaqgjbbbm3nw5qpycy5lqr8x"; depends=[doParallel dplyr foreach Rcpp tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catnet = derive2 { name="catnet"; version="1.15.3"; sha256="1dgqrn1lz57pwb5pca0mlvcmw9piy9xgf6fs0y2lsy4qxa9k0plk"; depends=[]; }; + catseyes = derive2 { name="catseyes"; version="0.2.3"; sha256="1p0jnjjfl1jqqqk8q6yfsxrh30idfbss7v6lrrm25x8zrhxah0ww"; depends=[]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; cattonum = derive2 { name="cattonum"; version="0.0.2"; sha256="0flsfyiymg8p1wik6yldas0ai1bq973rhhh4s3dblf1il4fdl4bv"; depends=[dplyr tidyselect]; }; causalMGM = derive2 { name="causalMGM"; version="0.1.1"; sha256="13qx71rfc6m7mvlpwma7ks09f3mlxknxw3jlv3b4iq5pjs8f1v5r"; depends=[rJava]; }; @@ -5308,6 +5322,7 @@ in with self; { cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; }; cbinom = derive2 { name="cbinom"; version="1.3"; sha256="0d9rsvs0zmm37pf1v9vbkkghi0pjlavzi5ar2cvsjapg9x4zg6wl"; depends=[Rcpp]; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; + cbsem = derive2 { name="cbsem"; version="1.0.0"; sha256="0gc14rhfy566yw2yqzq7yk0xanpzcz7zp3km483azgk816vakbn4"; depends=[]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.3"; sha256="1vb6678ki391w0iskggg2xkzbcvvvvpf4vnan5ymk1v7m0i3g3b9"; depends=[httr jsonlite whisker]; }; ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; ccRemover = derive2 { name="ccRemover"; version="1.0.4"; sha256="1npd0vx2hyg7qbwd650987i49v5cxr6i1hlj5rw6fxc0b808s596"; depends=[]; }; @@ -5324,11 +5339,11 @@ in with self; { cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; }; ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; cctools = derive2 { name="cctools"; version="0.1.1"; sha256="1baqijxg75wr90y38d5g1gg8jmpz8ji7zv51wp9n1knif27rg348"; depends=[qrng Rcpp RcppArmadillo]; }; - cdata = derive2 { name="cdata"; version="1.0.3"; sha256="0vakyz0asb0fw86lfd1vcc5px45s1xa9f10san0kvlv1qs7agmdz"; depends=[rquery wrapr]; }; + cdata = derive2 { name="cdata"; version="1.0.5"; sha256="1ydjbd4fvdqli8a8llgjp030mqnd60yh0qpw5x7sdvpyyqq3zk9f"; depends=[rquery wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; - cdcfluview = derive2 { name="cdcfluview"; version="0.7.0"; sha256="00yc3q28y20l2ppqxy6h53p9fvwhvpkc8m7csmp2lizqh787i2cc"; depends=[dplyr httr jsonlite MMWRweek purrr readr sf units xml2]; }; - cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; - cdfquantreg = derive2 { name="cdfquantreg"; version="1.2.0"; sha256="1z9a2rivi1i56369hkz94azfhyqch8wph819lgrxlrr4mcpl6k2p"; depends=[Formula MASS pracma]; }; + cdcfluview = derive2 { name="cdcfluview"; version="0.9.0"; sha256="0i6jipzpfcqs48w0cwjyynf3lpdppa7xh27q1rwv3jsqd246880v"; depends=[dplyr httr jsonlite MMWRweek purrr readr sf units xml2]; }; + cdcsis = derive2 { name="cdcsis"; version="2.0.0"; sha256="1xvfkzhgfcf8037s6yyw5i5xl1vbx6qlavvr8s4ijjcsgljgg5s8"; depends=[ks mvtnorm Rcpp]; }; + cdfquantreg = derive2 { name="cdfquantreg"; version="1.2.1"; sha256="0p847498bkds82xsx77hjkjxim8n0i05l9008dhdjrvrsax9is37"; depends=[Formula MASS pracma]; }; cdlTools = derive2 { name="cdlTools"; version="0.14"; sha256="0zf00y8qcklz2yp7vx6mjvx2h2p4kq44r51z4qy88kq9v62rqz3k"; depends=[httr raster]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.0"; sha256="0a08rpc7chqbix10jimjh46dy6val97mrzqk972pq446b6ci95sn"; depends=[data_table freqparcoord magrittr partools plotly]; }; @@ -5346,7 +5361,6 @@ in with self; { censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; censReg = derive2 { name="censReg"; version="0.5-26"; sha256="1g69261ajha9p762xg2a5pj127b9pfws6ylpiqhjv7h96n12f2pi"; depends=[glmmML maxLik miscTools plm sandwich]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; - census = derive2 { name="census"; version="0.2.0"; sha256="02qlmifppnfxw7bzh0zngih8z8qz0sxpsi38h7bv324vxx94gvz2"; depends=[ggmap RCurl]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; censusapi = derive2 { name="censusapi"; version="0.4.1"; sha256="0lyy5n1zv22l0lwbkllvx0g6i2vzm7srgynmxhyis4d62cygfbdq"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; @@ -5359,7 +5373,7 @@ in with self; { cepreader = derive2 { name="cepreader"; version="1.1-2"; sha256="0pyycacsnbqz7hyrvrwwmmphrhny0byyxv66fwrvcsk3s88a7crf"; depends=[]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; - ceterisParibus = derive2 { name="ceterisParibus"; version="0.3.0"; sha256="1ajc5irn9b0ww58vp09pi5bkgx5qdfs5nih9zyayb3nka3jnrkpz"; depends=[DALEX ggplot2 gower knitr]; }; + ceterisParibus = derive2 { name="ceterisParibus"; version="0.3.1"; sha256="1vysa4yq5qjvhpl0x3snaqa45ywsn8hhpnc657v02kvvzlgx508j"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.4"; sha256="0fycmkqclv1j1hjq80mrcrgc7z6cjvx108wr9wcnyab9v1404d0x"; depends=[data_table doParallel foreach geosphere raster rgdal spatial_tools]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; @@ -5385,7 +5399,7 @@ in with self; { chebpol = derive2 { name="chebpol"; version="2.0"; sha256="0iz7iz7b1mc67gkgklh8zmnhacgq1cgdfy0w2wd54g0jz934d77p"; depends=[geometry]; }; checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; - checkmate = derive2 { name="checkmate"; version="1.8.5"; sha256="1q6igk50lq4fp5d3imgcn1j063h3gsp214ra4nlf534hf4wjlkg9"; depends=[backports]; }; + checkmate = derive2 { name="checkmate"; version="1.9.1"; sha256="1y4ylzn55kpyfpzcx9rxb9413d3ck6hair36ldl0ak61ia5kc75p"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="0.4.5"; sha256="0ml6lr8vmnrj2d073mr6dxsy0sqf50vyc956j9pnmzan2k7qv2wc"; depends=[]; }; checkr = derive2 { name="checkr"; version="0.4.0"; sha256="15dlclg567dfr6v7irc6hnhjfzn0w43wrw48md6b9mlswkk8lhmd"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-633"; sha256="09mw8rr5xb06gw3hbk7zv2nnx6mwhs6i19ffbp9pv3yv2945cjlf"; depends=[]; }; @@ -5398,7 +5412,7 @@ in with self; { chicane = derive2 { name="chicane"; version="0.1.0"; sha256="1f7sxqwg9s8l3lz538kyq8x5csqyq8g67vpm4zh9c962kg5m3f55"; depends=[data_table doParallel foreach gamlss gamlss_tr MASS]; }; childesr = derive2 { name="childesr"; version="0.1.0"; sha256="14jca7lxyn0fip794l70mznhz4ld6iix995wrmiqynxdms6j80np"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; }; - childsds = derive2 { name="childsds"; version="0.6.7"; sha256="1m5w0wbdk032b6d6h1704wji84yckyl427bja0mb4vqp28m99z48"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr reshape2 tibble tidyr]; }; + childsds = derive2 { name="childsds"; version="0.7.1"; sha256="1l3lpliir5hhkihia8s815ac81rrgpw5n58fcdys2ivs0jfslkm2"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; chillR = derive2 { name="chillR"; version="0.70.12"; sha256="1slg9fy1n0fxmbc2w0qg4zrfylbmyqgca9j3hjx93lha78i7r631"; depends=[fields httr jsonlite Kendall pls R_utils raster RCurl readxl RMAWGEN sp XML]; }; chinese_misc = derive2 { name="chinese.misc"; version="0.1.9"; sha256="1rs16a5rqp0yq1c5j4yl6yji7hf9x76v6x7qmxppshjii5r8055h"; depends=[jiebaR Matrix NLP purrr Ruchardet slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; @@ -5411,15 +5425,16 @@ in with self; { choroplethr = derive2 { name="choroplethr"; version="3.6.3"; sha256="0m6kyrgnv5s1q2ncc63rfxcwqdqx5adqk14q57ss4r84i14dm5yb"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps stringr tigris WDI]; }; choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; - chorrrds = derive2 { name="chorrrds"; version="0.1.7"; sha256="0dxy57w91cjfya5v4sgmih0snzqbbqh9ljyk9gb59z83dm6cj9fg"; depends=[dplyr magrittr plyr purrr stringr XML]; }; + chorrrds = derive2 { name="chorrrds"; version="0.1.8"; sha256="1h9zmfxq5cq075b8kxmqxi26lq1zvb02c6wlz0gf8rv8pj980ih8"; depends=[dplyr magrittr purrr stringr XML]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; chromoMap = derive2 { name="chromoMap"; version="0.1"; sha256="10cj9liggnbnr4isqmm8jp700z3qj4zq0dm7f7jyj7f0lg8my80y"; depends=[htmltools htmlwidgets]; }; chromoR = derive2 { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; chron = derive2 { name="chron"; version="2.3-53"; sha256="02bkywwsxwrxc035hv51dxgdm1fjxdm7dn19ivifln59dfs1862j"; depends=[]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; chunked = derive2 { name="chunked"; version="0.4"; sha256="0pqk6nnxxnlsw9zal62ajjalrlmvkdrzyz2l8r10jd7s61vhra40"; depends=[DBI dplyr LaF lazyeval]; }; - ciTools = derive2 { name="ciTools"; version="0.5.0"; sha256="0gzzzy2siwlhvwfv2hrasz4m9p8qir8w11bhc3hwkcidb4z8ydqs"; depends=[arm boot dplyr lme4 magrittr MASS survival tibble]; }; + ciTools = derive2 { name="ciTools"; version="0.5.1"; sha256="02jgi09vkzsan47mvg65ciqc1q4vmrl14v2i5bsaqxbvxwd65lww"; depends=[arm boot dplyr lme4 magrittr MASS survival tibble]; }; cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; }; + cimir = derive2 { name="cimir"; version="0.1-0"; sha256="1fcamhc95nmy2007rws3ricnr623b5dipqbmbw8jrafvpvj7cs6q"; depends=[dplyr glue jsonlite purrr RCurl readr rlang stringr tidyr]; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; cir = derive2 { name="cir"; version="2.0.0"; sha256="0ycjnbikpyhcfdik7c5knw4s9gl8y5h4219c4fhs4axs04np004v"; depends=[]; }; circglmbayes = derive2 { name="circglmbayes"; version="1.2.3"; sha256="1a60d8jpvwx2qwmy2if60c5vni9hp73fdwgz7mwi5xd5l67zwd3h"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; }; @@ -5430,14 +5445,14 @@ in with self; { citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citr = derive2 { name="citr"; version="0.3.0"; sha256="0pik6s6xk5768s3kkppw2192dj455py53gsn6k2b7xgg96ircy0g"; depends=[assertthat bibtex curl httr miniUI RefManageR rstudioapi shiny shinyjs yaml]; }; - ciuupi = derive2 { name="ciuupi"; version="1.0.0"; sha256="1c72crf0his7vzmh86isvcvi0ahxnqdq4i6ms84hk20jmlz2hxin"; depends=[functional nloptr pracma statmod]; }; + ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; }; civis = derive2 { name="civis"; version="1.5.1"; sha256="13zc0p63i2iqnc27xcnkvhfz0bxyv4grqg4qi8ah7a1n7d2jq2ks"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; }; cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; ck37r = derive2 { name="ck37r"; version="1.0.0"; sha256="0nn2sfsfs8mhgjrz0ghn041ybhj2qim4rs3lkci7s4n95c8hbgdi"; depends=[caret cvAUC doParallel doSNOW foreach ggplot2 pryr randomForest RANN reader RhpcBLASctl ROCR snow stringr SuperLearner tmle]; }; ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; cladoRcpp = derive2 { name="cladoRcpp"; version="0.15.1"; sha256="0msay6yvm6wc964gwrz31ky5w4mizakji3j6rpkydz0zlrl52v1j"; depends=[Rcpp RcppArmadillo]; }; - clam = derive2 { name="clam"; version="2.3.1"; sha256="1n30fvx4macyawhzv17bzvc1s4qdn51p9mx28apfjbf80qck24g9"; depends=[]; }; + clam = derive2 { name="clam"; version="2.3.2"; sha256="1za0njc10mcvdmyyy4yy6sgzl6kk2kix319w84d5mcs2zrfb83j4"; depends=[]; }; clampSeg = derive2 { name="clampSeg"; version="1.0-4"; sha256="0clmv53wz7shawg6mp4q3qp0z0gmd8jmd6flgzn2q1m8j2i62vq0"; depends=[Rcpp stepR]; }; clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; class = derive2 { name="class"; version="7.3-15"; sha256="1x1hqz8xyhbpq4krsh02glqnlzcch25agkmn4a3da9n723b37gzn"; depends=[MASS]; }; @@ -5446,7 +5461,6 @@ in with self; { classiFunc = derive2 { name="classiFunc"; version="0.1.1"; sha256="1qaima3sii394741p5n06lcqkk4fiv9apb7qqnpi6srx5h02lfl5"; depends=[BBmisc checkmate dtw fda fda_usc fdasrvf proxy rucrdtw zoo]; }; classifierplots = derive2 { name="classifierplots"; version="1.3.3"; sha256="01rvn0jwliyxj7q4cmyv8an5g7fzn6y3sccp8mj6bcqjyblfcfaa"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; - classify = derive2 { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; }; classyfire = derive2 { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; }; classyfireR = derive2 { name="classyfireR"; version="0.1.2"; sha256="13jw1qfc4qqyil67b8ck6fvic72v7i72rkbarj4ffhfdw15c8p5c"; depends=[clisymbols crayon httr jsonlite magrittr tibble]; }; cld2 = derive2 { name="cld2"; version="1.2"; sha256="03ffg1nxdlmg66sgg0w2jdx2s5jzdp8qhja24z0il2qy3qsa915k"; depends=[Rcpp]; }; @@ -5454,6 +5468,7 @@ in with self; { cleanEHR = derive2 { name="cleanEHR"; version="1.0"; sha256="0i8q7y4izc7q1pshdajy0n9wyihj4wlzzkd52ykam3dxqnwlnyh4"; depends=[data_table ggplot2 knitr pander Rcpp XML yaml]; }; cleanNLP = derive2 { name="cleanNLP"; version="2.3.0"; sha256="0d3v87ylp5vxkg6x5wfc1v482a3wcy02bb5xl3k2s8jpsawf2vxd"; depends=[dplyr Matrix stringi]; }; cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; + cleanerR = derive2 { name="cleanerR"; version="0.1.0"; sha256="1x0mda3s0q1mcp4cwdjyd1jx039ssr9xklawa3dr0zcisngl9g19"; depends=[plyr]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-2"; sha256="1bhpn53v36652mwg2ba2a6cs34slb7i0df2ibssyr2lnx5gciq4i"; depends=[maptools rgeos sp]; }; cleanr = derive2 { name="cleanr"; version="1.1.3"; sha256="0vf2c2inb729kzmpxaznqa2zwj80j1ix9198gc36zq41ag5pd7jk"; depends=[checkmate]; }; clere = derive2 { name="clere"; version="1.1.4"; sha256="1nk3chcnaa4y1c5rr6c3bapvi106ikbk9grqcq6s6j0imny1jp4a"; depends=[lasso2 Rcpp RcppEigen]; }; @@ -5463,31 +5478,32 @@ in with self; { cliapp = derive2 { name="cliapp"; version="0.1.0"; sha256="152hllp4iiva2qib79700v1mx1biy8bg4sy496vwq6mi4afvswjy"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.4.20"; sha256="140ncl7iv48yxnwf55rf8cwcyznzw7kslkjzymslyqmhvvw43q6p"; depends=[beeswarm boot flextable lme4 lmerTest officer xtable]; }; clickstream = derive2 { name="clickstream"; version="1.3.0"; sha256="01bii527xy7hdph1pm6f1g4qnwa5yf3mwz01rjg1h2gc12s5vzgg"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; - clifro = derive2 { name="clifro"; version="3.2-0"; sha256="1pq66wg19dvmacqj5pdh8ngxq1irihg76g0hnfy16gxsz7snvnkh"; depends=[ggplot2 lubridate magrittr RColorBrewer RCurl reshape2 scales xml2]; }; + clifro = derive2 { name="clifro"; version="3.2-1"; sha256="1y3xr61d9y6kb2h3i3a75l15hi3fxrjkf6w09dp5fk06hv6j90vr"; depends=[ggplot2 lubridate magrittr RColorBrewer RCurl reshape2 scales xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; climatol = derive2 { name="climatol"; version="3.1.1"; sha256="012spjgw20bg4rlxgwh05rhaswa4afbd35sq1isidm6i73ma0yjq"; depends=[mapdata maps]; }; climbeR = derive2 { name="climbeR"; version="0.0.1"; sha256="10i74bph7dhv2xj01qdhymlmfwj32lzxivanif11zmzmq9p5bqsw"; depends=[ggplot2]; }; - climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-9"; sha256="0bnxdfqc207fjjb8qas9wvmw1kpi69csadx5ylsbxwb53cy1g93i"; depends=[PCICt Rcpp]; }; + climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-9.1"; sha256="13wjkz2ldpvw9ri58vqpzdrqqyvzygmhzshx10v25d757x6h1qvb"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; climextRemes = derive2 { name="climextRemes"; version="0.2.0"; sha256="0cjvmd48iaid0f95354zpxlgwy79jga9lz0p82yiv0fb2mvjpbqn"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.0"; sha256="0xqgf9hmpidxq85rfm0vndh3waw0qf2yhrzmp04sqbbqhzkf9v7n"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv plyr RcppRoll reshape]; }; - clinDR = derive2 { name="clinDR"; version="1.8"; sha256="1vlzrxncx45xpg3jb8357dqk4pjylijr9fqj4pxwajnshrvsvqaw"; depends=[doParallel DoseFinding foreach ggplot2 rstan]; }; + clinDR = derive2 { name="clinDR"; version="1.9"; sha256="1s5j0rr164cw8ijxlpxcw8dj1zyqyvr83w2g7mj681gffmlcalld"; depends=[doParallel DoseFinding foreach ggplot2 rstan]; }; clinPK = derive2 { name="clinPK"; version="0.9.0"; sha256="1n1m8szd8mxdshwz8l3hfdxi7zrmsah46kxkv7jiffwnfhijfhsm"; depends=[curl testit]; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; clinfun = derive2 { name="clinfun"; version="1.0.15"; sha256="0cv1kdxj911scri82ms21lk9frsdp4251fawdsbqinby7k6hhmkc"; depends=[mvtnorm]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; - clipr = derive2 { name="clipr"; version="0.4.1"; sha256="061x84ildc7g1p91yw5iyj8lpqdf4hqv36as85lw8c6qv9ywbsqv"; depends=[]; }; - cliqueMS = derive2 { name="cliqueMS"; version="0.2.3"; sha256="1mhdjws2y30z1rq48fgn9ym0p9fz85gzjm5x7gks3fsbbhjgg1cj"; depends=[BH CAMERA igraph Matrix qlcMatrix Rcpp RcppArmadillo xcms]; }; + clipr = derive2 { name="clipr"; version="0.5.0"; sha256="1grx0lyww1cxmdvsr44wmbhz9i6zmiwxbchb97gxrfi9gy5kyc7x"; depends=[]; }; + cliqueMS = derive2 { name="cliqueMS"; version="0.3.0"; sha256="0241x52pd5mqldgc3pa4y4zvml5w3mf80qxsnw50f7y11m5jishq"; depends=[BH igraph Matrix MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; + clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; }; clordr = derive2 { name="clordr"; version="1.5.0"; sha256="0yzkkzp60gnap96hlfpjncxfkfvvma15yxpwf5pv5fgffacb8281"; depends=[doParallel foreach MASS pbivnorm rootSolve tmvmixnorm ttutils]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; cloudml = derive2 { name="cloudml"; version="0.6.0"; sha256="0p34wrrs06c17lbjlkjhm04ffg3l3zfkxb7swikjbim0j5aww2kh"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; clpAPI = derive2 { name="clpAPI"; version="1.2.9"; sha256="1dgfs124lcarcwh75f5mi5z9y723s2ik5kz2g9fxgcama7r01a1x"; depends=[]; }; - clr = derive2 { name="clr"; version="0.1.0"; sha256="08rzparhligxz86hzzrff5jsqijrdklg9h6j8syiajb1jmv3dqsn"; depends=[dplyr lubridate magrittr]; }; + clr = derive2 { name="clr"; version="0.1.1"; sha256="1vg9c8w25ac3l9wh8prv8h6ghxfslag301bbrsy6zcsfg4rjm0y8"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; - clubSandwich = derive2 { name="clubSandwich"; version="0.3.2"; sha256="1q4kidxcarlazh9zaav6vdc7ixb3hdg3zh5kr6mwkm087gi05nw5"; depends=[sandwich]; }; + clubSandwich = derive2 { name="clubSandwich"; version="0.3.3"; sha256="0x0kdws8s3mqydz74a1skdilanslh08r8v7c461vy991yfy493dx"; depends=[sandwich]; }; clue = derive2 { name="clue"; version="0.3-56"; sha256="1gc7galavhivs2102vvc8c51555hghkawiv8vzciwwpscr19zxg9"; depends=[cluster]; }; clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; }; clusrank = derive2 { name="clusrank"; version="0.6-2"; sha256="1hjxks8cb1mp1d93rcpwqjrxqavspmzjrxvflhv6nqx41ar9dpxv"; depends=[MASS Rcpp]; }; @@ -5509,7 +5525,7 @@ in with self; { clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; - clusterlab = derive2 { name="clusterlab"; version="0.0.2.5"; sha256="0v9nk92sbca66w416jhvrq3ldgsc76mlir89yi2r4k2i8ymw1xr6"; depends=[ggplot2 reshape]; }; + clusterlab = derive2 { name="clusterlab"; version="0.0.2.6"; sha256="0c0br3nf5zgq5d4119sr4cmm1hq9f1ayphi0j4n5dzpwc8kq4518"; depends=[ggplot2 reshape]; }; clustermq = derive2 { name="clustermq"; version="0.8.5"; sha256="0asa48gx9wycp87qgk7f6h27kp4kr5bpxs1lx1j2jm7b1ssqjsm4"; depends=[infuser narray progress purrr R6 rzmq]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; @@ -5522,13 +5538,14 @@ in with self; { cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; + cmenet = derive2 { name="cmenet"; version="0.1.0"; sha256="19cqd3ppama2g4a7mwnq4fry0nzkyny1z1irln3xqd22gb8lz38r"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmna = derive2 { name="cmna"; version="1.0.0"; sha256="1x4w47j39p2f2n4jxrp4r1vw6gvpqzkgr5h158s18z26zllpvrnr"; depends=[]; }; cmpprocess = derive2 { name="cmpprocess"; version="1.0"; sha256="0gqfmbm86bfi2l81pf2dn70rxg58h1y8hiyrp8sv9v84cx20422v"; depends=[compoisson numDeriv]; }; cmprsk = derive2 { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.1"; sha256="002s6ls670sdzrxgqv9gbl646b675q1gn6dzkngnf6rgcdqwid7n"; depends=[quantreg survival]; }; cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; - cmsaf = derive2 { name="cmsaf"; version="1.9.4"; sha256="01z6i3vjilr8nhjkdjifhg3vbfpkk7rii4hlv6rhy9cvpqs6f1d6"; depends=[fields ncdf4 raster sp]; }; + cmsaf = derive2 { name="cmsaf"; version="1.9.5"; sha256="14581zk65w11dkk57privfdgy5ynw4bv06lwz8r0bkyqmg1bzs05"; depends=[fields ncdf4 raster sp]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-5"; sha256="1cyiw12fmm83xjlsj8wszyr9sym1b4y3cns6naagvv8037wnh0wb"; depends=[elliptic emulator]; }; cna = derive2 { name="cna"; version="2.1.1"; sha256="1m4920ya3nm5x5yyzpd4g0vgnk4f0lc62c2favymk03ldg6kd6c4"; depends=[matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; @@ -5539,7 +5556,7 @@ in with self; { coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.5"; sha256="0s91yg60cpnn2fd185m7bww93kls4qlcq6bcy5nr5kmgiscril3p"; depends=[checkmate dplyr forcats gtools jsonlite lubridate magrittr purrr RCurl reshape2 rlang rvest stringr tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="3.6.0"; sha256="10l989f59faw5pr8gm2gfp66vg6y16837m9vp470xnwsim7mxa0r"; depends=[crayon ggplot2 ggstance]; }; + cobalt = derive2 { name="cobalt"; version="3.6.1"; sha256="1ps91naikjsgb5hhj41hn82pc7l7bk5wghybwqcvhn3d5rmxf1w0"; depends=[backports crayon ggplot2 ggstance]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-3"; sha256="1pqvz7czcchri4x79g78hbwyagb3bqzdqb047zkbdinyz067c7kb"; depends=[quantreg SparseM]; }; cocktailApp = derive2 { name="cocktailApp"; version="0.2.0"; sha256="05jw72v7gayyfflyy5g249d4sl689a55bf7ycijiks2s5gbj68b6"; depends=[dplyr DT forcats ggplot2 magrittr shiny shinythemes Ternary tibble tidyr]; }; @@ -5548,9 +5565,9 @@ in with self; { cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-2"; sha256="03fs3sdrrym3is92dgpa6ydk3m63gaihwy7bva4k0wm2hxm7x2k7"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.1.10"; sha256="14qpvwxymgph1zc5f7bskkizq4zilwrl40mjl2j718bpmzk0v4za"; depends=[MASS Rcpp RcppArmadillo]; }; + coda_base = derive2 { name="coda.base"; version="0.1.11"; sha256="01vmm1qzm9vfgd6s5nd92xk4h89iarprp6jb1y7bqwg8is4l7jp3"; depends=[MASS Rcpp RcppArmadillo]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; - codebook = derive2 { name="codebook"; version="0.7.5"; sha256="02mh4g82v56x13wk28ddvwqcibf2dymha7db3f2a7k9297vxlbfz"; depends=[dplyr DT future ggplot2 glue haven htmltools knitr labeling labelled likert miniUI pander psych purrr rio rlang rmarkdown rstudioapi shiny skimr stringr tibble tidyr]; }; + codebook = derive2 { name="codebook"; version="0.7.6"; sha256="0g7fqy61wp3bddcc3bhc4m2w4c3160j720bacjawkpchc0mj0f8b"; depends=[dplyr DT future ggplot2 glue haven htmltools knitr labeling labelled likert miniUI pander psych purrr rio rlang rmarkdown rstudioapi shiny skimr stringr tibble tidyr]; }; codemetar = derive2 { name="codemetar"; version="0.1.6"; sha256="1jjm1c7fkrzyhb57ckdf3d808im5j6c20ykkjsnddh220jy4sgss"; depends=[crul curl desc devtools gh git2r jsonld jsonlite memoise purrr readr sessioninfo stringi stringr tibble usethis whisker]; }; codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-16"; sha256="00bmhzqprqfn3w6ghx7sakai6s7il8gbksfiawj8in5mbhbncypn"; depends=[]; }; @@ -5581,21 +5598,20 @@ in with self; { colocalization = derive2 { name="colocalization"; version="1.0.0"; sha256="0szdxjj5nbb3ncxsg0b7jphlqqxnizs2lymcafk42sdgvlfkx8sr"; depends=[ggplot2]; }; colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; colorSpec = derive2 { name="colorSpec"; version="0.7-5"; sha256="1qswd0f8knzrv5di4lq2vknsbijbz6zlh6ay09nnkh127wrzc76s"; depends=[MASS minpack_lm rootSolve]; }; - colordistance = derive2 { name="colordistance"; version="1.0.0"; sha256="1z4pa5byk1ag6pqdqi6sn5z6caak4733399gk6zp4wi4kfd9p64a"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scatterplot3d spatstat]; }; + colordistance = derive2 { name="colordistance"; version="1.1.0"; sha256="0aiqvx0mlraczkcfhzfcaavmqqmxiffnghhw266f84bphxw6b5q2"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scales scatterplot3d spatstat]; }; coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; - colorednoise = derive2 { name="colorednoise"; version="1.0.3"; sha256="1idwb4w1r7jpjvrlly8326i4d9lw6bjlmlb591hgwl5xdf4599gi"; depends=[dplyr purrr Rcpp RcppArmadillo tidyr]; }; - colorfindr = derive2 { name="colorfindr"; version="0.1.3"; sha256="0h74075km6hxf9j35iwsd3af0igfpplgjnh3lzgkdqw0shp86iy8"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; }; + colorednoise = derive2 { name="colorednoise"; version="1.0.4"; sha256="0y218mkryy1jja6qa71z1sr64rny40x7sk9f8l8jbjqqkjxr6q53"; depends=[dplyr purrr Rcpp RcppArmadillo tibble tidyr]; }; + colorfindr = derive2 { name="colorfindr"; version="0.1.4"; sha256="175h476dzq1f2x25vdd268xj4ja4lv8fhfj9vld85waqi0sq515g"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; }; colorfulVennPlot = derive2 { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; }; colorhcplot = derive2 { name="colorhcplot"; version="1.3.1"; sha256="009pyyb30kwshldd7v7zfy5rxys6i0dhlc5w8ail61acbg4rlrmz"; depends=[]; }; colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; }; colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; }; colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; colorscience = derive2 { name="colorscience"; version="1.0.5"; sha256="0pr28fhv7alvki9f6wncys8lxihsl6q6lr8xffw4fkkgyapnhqxg"; depends=[Hmisc pracma sp]; }; - colorspace = derive2 { name="colorspace"; version="1.3-2"; sha256="0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"; depends=[]; }; + colorspace = derive2 { name="colorspace"; version="1.4-0"; sha256="0mpmvz2sycjp4c9y3v3qin7mdjy812hwi7cyjnblcw6xb1ckq06f"; depends=[]; }; colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; - colourlovers = derive2 { name="colourlovers"; version="0.2.2"; sha256="0fgxs73l4g1lnmc2q613ykxxrbmvq6w66zpidccqg64wa9cy5yhm"; depends=[jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="1.0"; sha256="0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; - colourvalues = derive2 { name="colourvalues"; version="0.2.1"; sha256="1s3fqm3xyxb4qkj0pb52np6ics83mxs8kvkgc87g51nx479pxz13"; depends=[BH Rcpp]; }; + colourvalues = derive2 { name="colourvalues"; version="0.2.2"; sha256="0i6p7xn9b59ywgbrby78zqxz3bc45bkqyc131kb3987zy4wvh438"; depends=[BH Rcpp]; }; colourvision = derive2 { name="colourvision"; version="2.0.2"; sha256="15ndhqpp5fi9jgiri9ysl68nf4rdamh9c25svf5nvh2wvv8shrd9"; depends=[Matrix rgl]; }; colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; @@ -5604,7 +5620,7 @@ in with self; { combiter = derive2 { name="combiter"; version="1.0.3"; sha256="11pcvrpbvkzkjwks2z6ww7s9d5fkh8zl0jw52a5ya3y1wkqcs3n6"; depends=[iterators itertools Rcpp]; }; comclim = derive2 { name="comclim"; version="0.9.5"; sha256="1s6zh16j0q2n7gkvhd4bym9w3hyg4b9n5lpgspqp2nlygdl6jxxb"; depends=[]; }; cometExactTest = derive2 { name="cometExactTest"; version="0.1.5"; sha256="0ar9axm9cd1wd937xcmsmd7xqilnfyab8gsrpkiqpc3fjh86qyrp"; depends=[dplyr]; }; - comf = derive2 { name="comf"; version="0.1.7"; sha256="1waxapw870fssmy9mzzpslypbal7vanlajzv9ffnsh5w2yzjdpfi"; depends=[plyr]; }; + comf = derive2 { name="comf"; version="0.1.8"; sha256="1glvqf97362yqr22bx51fpr2xz3b15vlhfr5i403n070wnxjlzb0"; depends=[plyr reshape]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; commonmark = derive2 { name="commonmark"; version="1.7"; sha256="024iz1qp2kv6iz6y69ir0jk3qhjps86rhkzlcmhqsxx97rx7cjni"; depends=[]; }; @@ -5624,7 +5640,7 @@ in with self; { compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; }; comperank = derive2 { name="comperank"; version="0.1.0"; sha256="0fxg32kp4v42455fia48rnbd3v84g4vsh4r4qc29d0gg93ymz9hp"; depends=[comperes dplyr Rcpp rlang tibble]; }; - comperes = derive2 { name="comperes"; version="0.2.1"; sha256="1mi7x7634lxzzpp1z6xq0pbmfq3p63mqy3kvk19xjfbiz3drakw3"; depends=[dplyr magrittr rlang tibble tidyr]; }; + comperes = derive2 { name="comperes"; version="0.2.2"; sha256="1kybykamzzgx00l758304n4m4q02cssqmq14cf93rlzy23348sw5"; depends=[dplyr magrittr rlang tibble tidyr]; }; compete = derive2 { name="compete"; version="0.1"; sha256="1b1320jw8pcnjkzb0lr8j6d3z7yhlq31gszd79wdcmwnpzap9k0z"; depends=[igraph sna]; }; complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; @@ -5635,13 +5651,14 @@ in with self; { compute_es = derive2 { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; }; comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; - conStruct = derive2 { name="conStruct"; version="1.0.2"; sha256="039cv1gl39jb8w5mbhyj96d1x0b9rximqfd3315cidqf8ykli038"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; + conStruct = derive2 { name="conStruct"; version="1.0.3"; sha256="044303ljm3b1g330kajr8r65ghfb9kni5ww4iyi0bba4m4rw2jdl"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concaveman = derive2 { name="concaveman"; version="1.0.0"; sha256="0b6a37h4k3p879gp4qp3297q0fzq3yn79yhkwjrcxhcl86sg5nb6"; depends=[dplyr jsonlite magrittr sf V8]; }; conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; }; concor = derive2 { name="concor"; version="1.0-0.1"; sha256="0hjyvi6p16cyrmq0bq7fph1r5f3adp7zpf123wkm5bkjnc5122k0"; depends=[]; }; concordance = derive2 { name="concordance"; version="1.6"; sha256="0pb4mndrh1nimf59ajjcydlvc79nm6p7c219iymkn0b1hbrnx7lf"; depends=[]; }; concreg = derive2 { name="concreg"; version="0.6"; sha256="1ncs9cpviv5kd49hahlhi7wn2yk70msi22qv8fw91hf81ccimlp2"; depends=[survival]; }; + concurve = derive2 { name="concurve"; version="1.0.1"; sha256="0a9d8xzjrzka13ad0m0dl7wn31ah7hwd2rba7d99ggi4f8152chg"; depends=[ggplot2 metafor]; }; cond = derive2 { name="cond"; version="1.2-3.1"; sha256="1j0gf28mg2j6ahs83nk662bix1lb2c9184vn8sblw433zxqaa2ny"; depends=[statmod survival]; }; condGEE = derive2 { name="condGEE"; version="0.1-4"; sha256="0mqj2pc91n8h3arpd4b9f7ndbcnai21c67is22qg22wj7vhhs87h"; depends=[numDeriv rootSolve]; }; condMVNorm = derive2 { name="condMVNorm"; version="2015.2-1"; sha256="04563jljnjhbiaiq33gn5dxjfvv05xp3lhl3w942v0smy0cdhrh4"; depends=[mvtnorm]; }; @@ -5662,8 +5679,8 @@ in with self; { confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; conflicted = derive2 { name="conflicted"; version="1.0.1"; sha256="0hj9dvyi59y917cac1d3g1bgaghs40nr71z3y2msr29q01d1sqkp"; depends=[memoise rlang]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; - confreq = derive2 { name="confreq"; version="1.5.1"; sha256="0gy6d1kffb1w86ifldswb9krxyc2p646g9yjlfm1h243qlp52sfa"; depends=[gmp]; }; - congressbr = derive2 { name="congressbr"; version="0.1.7"; sha256="0n5zq31n0mfx4wwpi6jsjayiybpzhkxyz9laljpvnlpk0g3vzrad"; depends=[dplyr glue httr janitor lubridate magrittr progress pscl purrr stringi stringr tibble tidyr xml2]; }; + confreq = derive2 { name="confreq"; version="1.5.4-3"; sha256="1jn9v9z04a2yni4l3i7969kzzpgaxkdfdggi74dgp3jchda6vip7"; depends=[gmp]; }; + congressbr = derive2 { name="congressbr"; version="0.1.8"; sha256="1q5d1cchlnm925xfm48sdhji8zcr5hq0090qk00g6cp1j4rky5gv"; depends=[dplyr glue httr janitor lubridate magrittr progress pscl purrr stringi stringr tibble tidyr xml2]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; @@ -5690,7 +5707,7 @@ in with self; { coop = derive2 { name="coop"; version="0.6-1"; sha256="1hr78w7qlslpwnrz9mk6w4p5qa8sxhkzans5givy5hf9qkykn0dp"; depends=[]; }; coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; - copBasic = derive2 { name="copBasic"; version="2.1.1"; sha256="012fzdhxwgmg4l02kd5dw98wpia1mskc1csagblga5dplv5jdc7h"; depends=[lmomco randtoolbox]; }; + copBasic = derive2 { name="copBasic"; version="2.1.2"; sha256="0h73lnxjf2mji8x2jl0r9559a4sgj1pxivp89hmmnj8zl4b4c3gl"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-2"; sha256="032gphv64v2mmy63q86qgpa31i36ix6fkjsdxmzgqyxcyzgb0jcy"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; @@ -5723,7 +5740,6 @@ in with self; { correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; corrgram = derive2 { name="corrgram"; version="1.13"; sha256="1g5159vihsz5a2cfmg4g4i1lildn2x2wzck5sd0vml5810rxjpma"; depends=[seriation]; }; corrplot = derive2 { name="corrplot"; version="0.84"; sha256="1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"; depends=[]; }; - corrr = derive2 { name="corrr"; version="0.3.0"; sha256="1l5157m4k5zvxnkgndvkxc0ghcsgxvm5jr6hpbpdc6s1nnz7s027"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr rlang seriation tibble tidyr]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; cosa = derive2 { name="cosa"; version="1.2.1"; sha256="0v8hscvl59inb9kd283n92x86r1nv3n0f2d3g7br8vnniah97frz"; depends=[nloptr]; }; @@ -5734,7 +5750,8 @@ in with self; { costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; }; cotrend = derive2 { name="cotrend"; version="1.0.1"; sha256="14yzfq5a3wi26gn45mp2zm2yn6gic90csk9by66m08fgpzznz4dq"; depends=[xts]; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; - countcolors = derive2 { name="countcolors"; version="0.9.0"; sha256="1wv3l6g7kzkxj8cpldf96ckqsw47wx5gch5jb8l876ngxjxbvwjx"; depends=[colordistance jpeg png]; }; + countcolors = derive2 { name="countcolors"; version="0.9.1"; sha256="1gnwmw3inh8asbk6qba34vzx1k2cnh4m9d1346gxhzhlxvl6xiza"; depends=[colordistance jpeg png]; }; + countfitteR = derive2 { name="countfitteR"; version="1.0"; sha256="1kb7na35xk257a6bd9ihgbn13ygn5s553s9nph0hg7iw5nikknap"; depends=[ggplot2 MASS shiny]; }; countgmifs = derive2 { name="countgmifs"; version="0.0.1"; sha256="19d8xr7ipqp16w46c3mrg15jfcvpj7n4pds8zw6mgw4g81bcxamf"; depends=[MASS]; }; countrycode = derive2 { name="countrycode"; version="1.1.0"; sha256="1pmv2jxr1ydgv8r5n20s5z80hdmzgvhm4cxdqhbkf7nfyipwl8xl"; depends=[]; }; countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; }; @@ -5743,18 +5760,17 @@ in with self; { covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; - covTest = derive2 { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[glmnet glmpath lars MASS]; }; covTestR = derive2 { name="covTestR"; version="0.1.4"; sha256="0j9kay8lwkhpdyg0fbfars1m58v0i58v1v5sm7m72s7kz8qh2yfs"; depends=[purrr Rcpp RcppArmadillo rlang]; }; covafillr = derive2 { name="covafillr"; version="0.4.3"; sha256="0mqq4hm3nhzrvdai9blb0ycgm6j5klfd8y4ib5pl99plffs6r7pl"; depends=[RcppEigen]; }; covatest = derive2 { name="covatest"; version="1.1.1"; sha256="0fnm3ljk4my3xinv0qswi57l51z0j6cva7by00p8f5992hhk3sn9"; depends=[gstat lubridate matrixcalc sp spacetime zoo]; }; - coveffectsplot = derive2 { name="coveffectsplot"; version="0.0.1"; sha256="0bjhyxd3qdy8idpq76ld9bdyhyqhzl7kkl9g2zcfs0hiw94mv1fd"; depends=[colourpicker dplyr egg ggplot2 ggstance markdown shiny shinyjs tidyr]; }; + coveffectsplot = derive2 { name="coveffectsplot"; version="0.0.2"; sha256="043v76aq8pl1p7q16zlzpclbz5n68ryc58a7y850yvbx23i9raps"; depends=[colourpicker dplyr egg ggplot2 ggstance markdown shiny shinyjs tidyr]; }; covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; }; covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; }; covr = derive2 { name="covr"; version="3.2.1"; sha256="187hvqp7mvxy3hl00fgw56sm93yrz81fwixf652arr0ih2jdm47a"; depends=[crayon digest httr jsonlite rex withr]; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; - cowplot = derive2 { name="cowplot"; version="0.9.3"; sha256="1jrx1h0blkk577y4cvnjk7xccn7qmjiv2bnpgqlsjvjhsxglf41y"; depends=[ggplot2 gtable plyr scales]; }; + cowplot = derive2 { name="cowplot"; version="0.9.4"; sha256="0yvalwalvyddyqk0q66y8361nxlh2cvp3ssazax9g5q89lghjmzv"; depends=[ggplot2 gtable plyr scales]; }; cowsay = derive2 { name="cowsay"; version="0.7.0"; sha256="1f5hc1sj79yd3l2c6vrcj6xx2hdfxb16c3d2sgr7yps8j5fyrb9h"; depends=[crayon fortunes rmsfact]; }; coxed = derive2 { name="coxed"; version="0.2.0"; sha256="0idr6ic8nsw6f210swvpfzbaf05blg4x6kh6mb7q773qirmwi0rs"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; }; @@ -5764,7 +5780,7 @@ in with self; { coxphf = derive2 { name="coxphf"; version="1.13"; sha256="16bman8xv5xx7gg8s54sj3hc4isqxk4h3q93h4q3h3j0bdvww2yy"; depends=[survival]; }; coxphw = derive2 { name="coxphw"; version="4.0.1"; sha256="116dp6zispa8k7y6jrn4v9ipf0jqdhj68w9qqc2qwcapawvrd0nh"; depends=[survival]; }; coxrobust = derive2 { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; - coxrt = derive2 { name="coxrt"; version="1.0.0"; sha256="1nyc4qpgxyji314w372rg7dhiq6bmzfjbgi035m350s81fp6y8br"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; }; + coxrt = derive2 { name="coxrt"; version="1.0.1"; sha256="0srlpbxzqgbwhdj1fr4lkfxyf7zn6sm2aim2xmabri41zzl77mhx"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; }; coxsei = derive2 { name="coxsei"; version="0.1"; sha256="1agr0gmyy1f2x6yspj04skgpi1drpbc1fcbwhhhjsz1j6c64xagy"; depends=[]; }; cp4p = derive2 { name="cp4p"; version="0.3.5"; sha256="16pkl0brm415v153ln41nyy13fsp4i0jy8349lsffkv5mvp7vklc"; depends=[limma MESS multtest qvalue]; }; cpa = derive2 { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; @@ -5782,18 +5798,16 @@ in with self; { cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="1.4"; sha256="1sxf30rikzr4mj1nyr12ys7gcnx5vq0rpd9djc2lkfbqlvi4mmai"; depends=[MASS plm]; }; cr17 = derive2 { name="cr17"; version="0.1.0"; sha256="1zyq77gxycbwyqhv5w0zw4n7v3ipjs6rcbja43g0k5q8h0gjnnn1"; depends=[cmprsk dplyr ggplot2 gridExtra gtable scales survival]; }; - cramer = derive2 { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; + cramer = derive2 { name="cramer"; version="0.9-3"; sha256="1kdad8nndhics4282gfy9ncllk2kpawdy8ybq71vcd7hc7kf0zq5"; depends=[boot]; }; crank = derive2 { name="crank"; version="1.1"; sha256="117sgq7zm5wxmd97sfc927qq70snra6vd090mhpcsdhipw1py6zc"; depends=[]; }; cranlike = derive2 { name="cranlike"; version="1.0.2"; sha256="06xgxgwpmfrwmcd0gnr9prjjbhd1y0ky1zb8yh09v0bvsf6ixnyx"; depends=[DBI debugme desc RSQLite]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; }; - cranly = derive2 { name="cranly"; version="0.2"; sha256="0h6yfj805kbprgj28x43iz6lcjsv39vxdf33j9gg2gnmgr5zja67"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr visNetwork]; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; }; crayon = derive2 { name="crayon"; version="1.3.4"; sha256="0s7s6vc3ww8pzanpjisym4jjvwcc5pi2qg8srx7jqlz9j3wrnvpw"; depends=[]; }; - crblocks = derive2 { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-1"; sha256="0h97vr9sy7hncjxv5v3y79pw2qqzpx6z6nqgx6k2ics1lf9misyb"; depends=[Formula ordinal sandwich scoringRules]; }; creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; }; - credsubs = derive2 { name="credsubs"; version="1.0"; sha256="12bs1whk23y41hxa976j30d31x81rmxapz9ll5y2hi5c1h4fypn4"; depends=[]; }; + credsubs = derive2 { name="credsubs"; version="1.0.1"; sha256="0n3684fxknvvs57g2vjqykgdjfbpl6242nd23sm9nv2fn57q8k2c"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.3.0"; sha256="08dhn4i5i27zw3ayqp7lkw5z8dzckv8fhflpvz0mphax34pm3z72"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; crfsuite = derive2 { name="crfsuite"; version="0.2"; sha256="10d7gahqqc6g6l99n6g5r49hlngdl3k9jz9j2c4x9hx1r8f8gql6"; depends=[data_table Rcpp]; }; @@ -5818,7 +5832,7 @@ in with self; { crosstalk = derive2 { name="crosstalk"; version="1.0.0"; sha256="0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"; depends=[ggplot2 htmltools jsonlite lazyeval R6 shiny]; }; crossval = derive2 { name="crossval"; version="1.0.3"; sha256="0acpcisg6pkxblyc4j9hiri58h1rn7ay43p5ib5ia8a4a8bnfa4p"; depends=[]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.2.2"; sha256="0jmdzw1p2gya45nzxwri91mndq9kk8wlskraqmi68b6p17d8i2fa"; depends=[dplyr haven labelled readr readxl tibble]; }; - crossword_r = derive2 { name="crossword.r"; version="0.3.5"; sha256="1h6r5rrmla3jsdfnkxsv4drvp3nrkqkygqv9ak0pn37zlbms99z9"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; + crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.1.3"; sha256="0gvrki9ldm3yrnp6zx2awqg4p3pqjzv1088gn3nbg00j0i3s9m5h"; depends=[gtools VGAM]; }; crp_CSFP = derive2 { name="crp.CSFP"; version="2.0.2"; sha256="0gazmhf5bv994x441m2xm0w18h9lw3y68qzdf6gmyqimj4wjqjgf"; depends=[MASS]; }; crplyr = derive2 { name="crplyr"; version="0.2.0"; sha256="14j0cn3ci6vbmimcinzp25ym0h264405jn8gw7w0gk3rcamgh50s"; depends=[crunch dplyr lazyeval purrr rlang stringr tibble]; }; @@ -5833,11 +5847,11 @@ in with self; { crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; - crul = derive2 { name="crul"; version="0.6.0"; sha256="1vnir41mqah8ib9p2p4ij54bpv54baa1q9ad5j2a7hn59vwpjhh0"; depends=[curl httpcode mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.24.0"; sha256="0jydmicc4c4vkf6r3krybbrdf96059nx6q611lyd2qj32irlr49j"; depends=[crayon curl httpcache httr jsonlite]; }; + crul = derive2 { name="crul"; version="0.7.0"; sha256="1aphgqrpfqmwg8dvq226qxgw10m05xrrd9l738klml3zd88k5wly"; depends=[curl httpcode mime R6 urltools]; }; + crunch = derive2 { name="crunch"; version="1.25.0"; sha256="12r6iv080daqdh6anxwkj1hyclilnhi7v55k6cdskw0nlqwgzfji"; depends=[crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.2.0"; sha256="1q9mqpkg5ljb798922fmvjjp36kyjr1rrm6jf3s2fwjrhq186y3z"; depends=[crunch shiny]; }; cruts = derive2 { name="cruts"; version="0.5"; sha256="08mklbmwgaq6cf3hd40mingplwjss5im30l5j6nmy7lijp15nq7k"; depends=[lubridate ncdf4 raster sp stringr]; }; - crypto = derive2 { name="crypto"; version="1.1.0"; sha256="0z1zyjidpl7sk9vk278jljrbyfhhzv4wq195spyd63xwj2p33fgc"; depends=[cli crayon curl dplyr httr jsonlite keyring lubridate progress rstudioapi rvest tibble tidyr xml2 xts]; }; + crypto = derive2 { name="crypto"; version="1.1.1"; sha256="1kcldvl1rm363ah46hna6lcv8fkc48gp4d1vm24iig8fmi5rxa4x"; depends=[cli crayon curl dplyr httr jsonlite lubridate progress rstudioapi rvest tibble tidyr xml2 xts]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; }; @@ -5857,28 +5871,29 @@ in with self; { ctmcd = derive2 { name="ctmcd"; version="1.4.1"; sha256="01nflgdyb70kh4f8bnxpavr31fz4fh02kgz2nlx3zzblnm2idbcx"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.1"; sha256="1k9nr2xbaqrbpp31vdcnmpwyazcw79k0r3gbcbinva4pgv2psp29"; depends=[glmnet SuperLearner tmle]; }; - ctmm = derive2 { name="ctmm"; version="0.5.2"; sha256="1x8nzmhdby0nwm18l6b3y4x4b7pihfkpnhakykh23rfnr7d6ajj3"; depends=[data_table expm fasttime Gmedian manipulate MASS numDeriv pbivnorm pracma raster rgdal scales shape]; }; + ctmm = derive2 { name="ctmm"; version="0.5.3"; sha256="0ai18zp4ywghr671xgmbvrqbcpww1h6m2sznm1b9zwbsr93i8jvn"; depends=[data_table expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal scales shape]; }; ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.0"; sha256="0gz2js2n990sfwxwigp4dxqcf94f9bzcinyzjign5yvyr53fakvk"; depends=[psych]; }; - cts = derive2 { name="cts"; version="1.0-21"; sha256="0wagxqb8msjc8z33qp7sc92l53f56d9bzz9160bmgpjxlj6cnqcj"; depends=[]; }; - ctsem = derive2 { name="ctsem"; version="2.7.6"; sha256="1k435f2miq44m95wwbz4r9zxz20mgyynkkbdjwfxkbz15srci9f5"; depends=[BH corrplot data_table DEoptim KernSmooth MASS Matrix mvtnorm OpenMx plyr Rcpp RcppEigen rstan rstantools shiny StanHeaders]; }; + cts = derive2 { name="cts"; version="1.0-22"; sha256="0kcbppfsx1hvnsz6nmj8frrqrglcr6cmasd1ma34qkqb9f6q0xry"; depends=[]; }; + ctsem = derive2 { name="ctsem"; version="2.8.2"; sha256="0d6j71q7rnajryx0qas4sgyfaq84sw75sq3gcc9wjdl20kipnqy6"; depends=[BH corrplot data_table DEoptim KernSmooth MASS Matrix mvtnorm OpenMx plyr Rcpp RcppEigen rstan rstantools shiny StanHeaders]; }; ctv = derive2 { name="ctv"; version="0.8-5"; sha256="0kl6z8dbbjgm29q0c5xy6lihjgf5cdihrllm27x0zbcvy8lyl51p"; depends=[]; }; cubature = derive2 { name="cubature"; version="2.0.3"; sha256="0wvs80i4axj7pdcy9gjl08qzjbcjkldha94xy4gdxc34vgmh7gvr"; depends=[Rcpp]; }; cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; }; cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; - cumSeg = derive2 { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; }; + cumSeg = derive2 { name="cumSeg"; version="1.2"; sha256="0ix8g3w04n799pppyhyd365bdx9cwrgn7k7qljs1fdiq8s135wzk"; depends=[lars]; }; cumplyr = derive2 { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; - curl = derive2 { name="curl"; version="3.2"; sha256="15hmy71310hnf9yqvz0icx4cq939gv6iqaifzlfdh2ia8akawdhn"; depends=[]; }; + curl = derive2 { name="curl"; version="3.3"; sha256="1gd5i25anzi28lg1f8p7g63z9d46xi0qaw4lxpml5p0f52lvkc0c"; depends=[]; }; currentSurvival = derive2 { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[cmprsk survival]; }; curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; - curvHDR = derive2 { name="curvHDR"; version="1.2-0"; sha256="185097ikqhmqqc4ha7l74inx5cmg1bhgw3cw40wk0ngc4wv4sfqi"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curvHDR = derive2 { name="curvHDR"; version="1.2-1"; sha256="1a6b29kklyphv9iirm8xaxcdfcssk7ah4wm9ll53ls0alnzb15nw"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curveDepth = derive2 { name="curveDepth"; version="0.1.0.8"; sha256="0291adf4qch0z4h8rlk7nzgrn5yp6hfqjnj59nkrpg50vli4nlf4"; depends=[ddalpha Rcpp RcppArmadillo]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; customLayout = derive2 { name="customLayout"; version="0.3.0"; sha256="0zarqsdcjy8cymwrb6648nil509q9rhmp4633sidmmjclpyjca2q"; depends=[assertthat flextable gridExtra officer RColorBrewer rvg]; }; - customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; }; + customizedTraining = derive2 { name="customizedTraining"; version="1.2"; sha256="0kjp22bzv7a3xynhm9xmabfcms21586p8caz1nk1w88qdvidqfqd"; depends=[FNN glmnet]; }; customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; }; cusum = derive2 { name="cusum"; version="0.1.0"; sha256="1vl2mpasbv87jwzikiik2vdnzy517gknskjpl2iacwfjl63gnzi1"; depends=[checkmate]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; @@ -5888,7 +5903,7 @@ in with self; { cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; cvar = derive2 { name="cvar"; version="0.3-0"; sha256="164k8b40w1npbq3r9i6n9m0hkia3wavsid88zyc63j56lxxk8zmm"; depends=[fGarch gbutils Rdpack]; }; cvcrand = derive2 { name="cvcrand"; version="0.0.2"; sha256="1gclzn6qqjylxg3v263x5cfg1wjkqviqb3fzzb7w0ckpld2his0v"; depends=[tableone]; }; - cvequality = derive2 { name="cvequality"; version="0.1.3"; sha256="19mpf2vjj2hfgdr3mx5y1i0ldb0byvv2ii7lyanhc6c2a3mirs38"; depends=[]; }; + cvequality = derive2 { name="cvequality"; version="0.2.0"; sha256="1im839vzfqylphp2vr20avnzkyl02n88fngbs63d4ik7c72d9992"; depends=[]; }; cvmgof = derive2 { name="cvmgof"; version="1.0.0"; sha256="0rnd7icqjprhbpmn383ah4fi5nz0hmg88fa612fmivkvnpn79v6j"; depends=[lattice]; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvxbiclustr = derive2 { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; }; @@ -5906,23 +5921,23 @@ in with self; { cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; cytofan = derive2 { name="cytofan"; version="0.1.0"; sha256="0gqs98mnwiawnyfb9hs5nlin8d1fj64bszn4b40gs8ajyh36r9pp"; depends=[ggplot2 RColorBrewer]; }; - cytometree = derive2 { name="cytometree"; version="1.2.0"; sha256="1919f9d7phgnf1z5srgjj4h4pgl9hrv9rx75rifj819zv2s9hfig"; depends=[cowplot ggplot2 igraph mclust RColorBrewer Rcpp RcppArmadillo robustbase]; }; + cytometree = derive2 { name="cytometree"; version="1.3.0"; sha256="031dzyah0xlgp2rrkardpvl8l7f3w4pzqb2i1yv707yj7y4yajhj"; depends=[cowplot ggplot2 igraph mclust Rcpp RcppArmadillo robustbase]; }; cytominer = derive2 { name="cytominer"; version="0.1.0"; sha256="1p988aw689kgpbglmzrnl30krnbynwk3dgjv7w3x2719hi481z2j"; depends=[caret doParallel dplyr foreach futile_logger magrittr purrr rlang tibble tidyr]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.2.0"; sha256="0xjr36hdd00dy8s8z1a1s44dn2wg0nm6yqc1rri2l0dqrbh4nrbn"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.2"; sha256="1ici8j0wzzklhmw94qlxm292qs562vc32wq8mnjsas2n1p35vkmk"; depends=[base64enc dendextend htmlwidgets png scales]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; - d3r = derive2 { name="d3r"; version="0.8.4"; sha256="01z70nc48z7l3lr5p3nndiv8hxqlbinn7yr8pd15yk35f46hcsbk"; depends=[dplyr htmltools tidyr]; }; + d3r = derive2 { name="d3r"; version="0.8.5"; sha256="061226iwmir3d1crh449mrbrrqfccknyflqhnbmzn9by5pmq1qf7"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; - dHSIC = derive2 { name="dHSIC"; version="2.0"; sha256="1acbzln2rlyranccsjndpw6pj4a2lyb24jb52r2wms8lsg4fn2m9"; depends=[Rcpp]; }; + dHSIC = derive2 { name="dHSIC"; version="2.1"; sha256="1c1xz1f1fp937w4rlylvqv3ii0p9dafvmn4fqq8rzxhcg5rn9j4l"; depends=[Rcpp]; }; dLagM = derive2 { name="dLagM"; version="1.0.10"; sha256="0fbblcg2z10a2yijxl6sgbzb59y0mwwg6wg1p68madkr4r3w79mw"; depends=[AER dynlm formula_tools plyr wavethresh]; }; dMod = derive2 { name="dMod"; version="0.4.2"; sha256="0zxan4q3xlmk441yzl8jq53qh966njjy9hdprk96pvqf8pa3ca40"; depends=[cOde deSolve digest dplyr ggplot2 plyr rlang rootSolve stringr]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; daarem = derive2 { name="daarem"; version="0.2"; sha256="1lh7p8nsn984v3p2fis0ipv4vd2wli60l730i47ij0g38swrs58x"; depends=[]; }; - dabestr = derive2 { name="dabestr"; version="0.1.0"; sha256="1ds6mb535h91fvnfl6rhv12z0qpkpk85bijdnb19k5h8rfljx6qf"; depends=[boot cowplot dplyr forcats ggbeeswarm ggforce ggplot2 magrittr rlang simpleboot stringr tibble tidyr]; }; - dad = derive2 { name="dad"; version="3.1.1"; sha256="120f7asg3hbr0c5n821jdr8c7cz67dbv1v646v6xgnyy4n6ym2qa"; depends=[e1071 lattice]; }; + dabestr = derive2 { name="dabestr"; version="0.2.0"; sha256="0ni0rvm5x5608y0p361gydz7jm7fa0s508mskfqr8lsn3n1i23xf"; depends=[boot cowplot dplyr forcats ggbeeswarm ggforce ggplot2 magrittr rlang simpleboot stringr tibble tidyr]; }; + dad = derive2 { name="dad"; version="3.2.0"; sha256="1qg60jwfl8c2ak2989zcm7ab7hcbs78hxzpm4yavn37av2ajbymp"; depends=[e1071 lattice]; }; dae = derive2 { name="dae"; version="3.0-23"; sha256="0rsvnxvfbvcfwm544lwvp4ivwv2nndgscc3c5ap99br7c5jm4xym"; depends=[ggplot2]; }; daewr = derive2 { name="daewr"; version="1.1-7"; sha256="01n9g3adjk66wx9lm9gl6wa3y9ba5w0w0p5ayj8rx5ywxnm8fnvi"; depends=[BsMD FrF2 lattice]; }; daff = derive2 { name="daff"; version="0.3.0"; sha256="1kl5pjwxds6bz58zd5xaa1hknd6f9i0512895fhljqi7kvsrldra"; depends=[jsonlite V8]; }; @@ -5933,12 +5948,12 @@ in with self; { dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; damr = derive2 { name="damr"; version="0.3.1"; sha256="1hxsbs2kfv1js4mbllk7fkv3h0gkmw6cymakwj426hk7p8ppb586"; depends=[behavr data_table readr]; }; dams = derive2 { name="dams"; version="0.2"; sha256="0hf5s8i61r5q4h3s8dfmdl3vkj7v15ha59pjvpjqx3yihsgziqz9"; depends=[RCurl]; }; + dapr = derive2 { name="dapr"; version="0.0.2"; sha256="126wkcsbxg8ad27c7f5ykz5h9v4pw2j2ad8qky6va224x8kp3lj6"; depends=[]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; - dartR = derive2 { name="dartR"; version="1.1.6"; sha256="1vyfmrpgha00zib7zclfp3773hww6ak7w3ngwfhia3ya3pdkj5h2"; depends=[adegenet ape data_table directlabels dismo doParallel foreach gdistance ggplot2 hierfstat igraph leaflet MASS mmod pca3d pegas plotly plyr PopGenReport qvalue reshape2 rgdal rgl rrBLUP seqinr SNPassoc SNPRelate sp StAMPP stringr tidyr vegan]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; dat = derive2 { name="dat"; version="0.4.0"; sha256="1nw16hsw9b4hpcl5rqrlw6yk9y2h1pd0ra1c7iz82sknkyd5afi6"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; }; - data_table = derive2 { name="data.table"; version="1.11.8"; sha256="1nb6wngrk1a30m984524gf26fa1nwgyf4y4an94dibcwb5jp8hnw"; depends=[]; }; + data_table = derive2 { name="data.table"; version="1.12.0"; sha256="1xz388khklqqc39r1cmjvqm65azambgzqw0743aypm6v4chi26v1"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="0.7.8"; sha256="05svd1h70dn92imadw2djqqvchx30md74d4z6a00grkajj16cchb"; depends=[DiagrammeR R6 stringr]; }; data_world = derive2 { name="data.world"; version="1.2.2"; sha256="1d9hh4965f2d0lwh2xxhnxzc948ailkjzdax3d3z9l8lakqfrx0h"; depends=[dwapi httr ini miniUI shiny stringi]; }; data360r = derive2 { name="data360r"; version="1.0.2"; sha256="09s1p5yh756jl13jq6jx10r009lqvpry5y7y83xd4dqwa180s9gg"; depends=[curl data_table jsonlite reshape2]; }; @@ -5958,10 +5973,10 @@ in with self; { datamaps = derive2 { name="datamaps"; version="0.0.3"; sha256="00pvns98miq56z3prbb5qg608d5ns9wbp0711x3mmqg0bld1xwmp"; depends=[htmlwidgets magrittr]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.3.1"; sha256="0q1zd1l7l0hmbs1bx469d706rmprjbz2f2dgcnfp9wxfgqpfxkz1"; depends=[assertthat httr lubridate readr tibble]; }; - dataone = derive2 { name="dataone"; version="2.1.1"; sha256="17x1v1v13v06qyjb5mvxcdnlp7ln73rhgaib1w1sc44385m33hxs"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; + dataone = derive2 { name="dataone"; version="2.1.2"; sha256="0rdn2jjqxkyf77xfbxy1zkdgrfhrcwd1dagidn0hynrldfj4r3iw"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.3.1"; sha256="0hzc68vgjvpm235zg8k2642c3jzh3ls9kp6lpz720y1b56q8k3n7"; depends=[digest hash redland uuid XML]; }; datapasta = derive2 { name="datapasta"; version="3.0.0"; sha256="022ci7iy683lh3fh13a4b3szzqp6j4fchil695bifhi0a34bnxyr"; depends=[clipr readr rstudioapi]; }; - datarobot = derive2 { name="datarobot"; version="2.10.0"; sha256="0z16njqxjp0n6avkxknvb2mk5w1mg4y0kan06cqxq2kg0ry0ky91"; depends=[curl httr jsonlite yaml]; }; + datarobot = derive2 { name="datarobot"; version="2.11.0"; sha256="19if7ac95wb6pp79v85vfxgdm4zqrm04izg2cmg0bw8frkgr6mhk"; depends=[curl httr jsonlite yaml]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.4"; sha256="1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; datasets_load = derive2 { name="datasets.load"; version="0.3.0"; sha256="13ywnqln831i5hlf1cpqcyc77blg99w8jvy8jic17z86fjxh4gim"; depends=[DT miniUI shiny]; }; @@ -5990,10 +6005,10 @@ in with self; { dbmss = derive2 { name="dbmss"; version="2.6-3"; sha256="0b3vbsb01rz46mspfk8v9dgwqkxnjkv5d6152zg1zsvyv0z9wvqd"; depends=[cubature Rcpp RcppParallel spatstat spatstat_utils]; }; dbparser = derive2 { name="dbparser"; version="1.0.0"; sha256="060hmnwhindwlk7xjcz1nbr4lazd4v4918zs6q13ba9gp9ydi98c"; depends=[DBI dplyr ggplot2 odbc purrr tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.0"; sha256="1sdhw73a518pj81p4xzfkyk5qnfvv7pmizqgwypmkmr3j87klkdx"; depends=[dplyr ggplot2 purrr rlang]; }; - dbplyr = derive2 { name="dbplyr"; version="1.2.2"; sha256="0j5w6a1qim972kv4vmvinp3j50yr4idmm9cd3w7y3zsz0nq0nhcx"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; }; + dbplyr = derive2 { name="dbplyr"; version="1.3.0"; sha256="07p23vyvi7s4abldhkyir05kcf7xnfc18igfryq12j67xd0jql0m"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; }; dbscan = derive2 { name="dbscan"; version="1.1-3"; sha256="1q0vlrp0abzci2zsjgh7jp3sk1wflcvwjmy9fp0gsay8sgdcixgk"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; }; - dbx = derive2 { name="dbx"; version="0.2.3"; sha256="083h3mlmmpmpr887akl7wg31xc5kap5il8nghzd8g9mlba9n43zn"; depends=[DBI]; }; + dbx = derive2 { name="dbx"; version="0.2.4"; sha256="09sg1yx7ww1lgqqvww4akzsn4ak1nv307gdc1p9719qzj0gnl491"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dcemriS4 = derive2 { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; }; @@ -6003,10 +6018,11 @@ in with self; { dcmodify = derive2 { name="dcmodify"; version="0.1.2"; sha256="093rh3r3n0wjdpx861xiqd1zqd5v1v9rzxgcynz4awr7jbm5xszi"; depends=[settings validate yaml]; }; dcurver = derive2 { name="dcurver"; version="0.9.1"; sha256="1cfy0j3rmi3laszrgd3i59cfy4xfs2p6h9dcwbkwq6wnshrpypfn"; depends=[Rcpp RcppArmadillo]; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; - ddalpha = derive2 { name="ddalpha"; version="1.3.7"; sha256="1fjxky9wdy2f3qch3z97gd930mpialilish2jwhffz2n2c32hlk4"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; + ddalpha = derive2 { name="ddalpha"; version="1.3.8"; sha256="0gi0hl14ghgf65zxsvgzh9z6xx1nyi49cpx192lmwrwqn3dy7ba0"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; ddeploy = derive2 { name="ddeploy"; version="1.0.4"; sha256="06s4mn93sl33gldda9qab8l3nqig8zq0fh1s2f98igsysmn31br5"; depends=[httr jsonlite]; }; ddiv = derive2 { name="ddiv"; version="0.1.0"; sha256="1r2sxlkw1vxf2svdi1nary3hb7c5k1b4j820mj268r9swmy632ch"; depends=[MASS segmented]; }; - ddsPLS = derive2 { name="ddsPLS"; version="1.0.5"; sha256="00pcpdqkihcvqj6w52kr00rf6m19dh3ql6xhazk865gk9g5phgy5"; depends=[doParallel foreach MASS RColorBrewer Rdpack]; }; + ddpcr = derive2 { name="ddpcr"; version="1.11"; sha256="0slfgxp223mnn0f9k72p58m2frnp4c1dvdwsv5fwxw0h022wcrwr"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; }; + ddsPLS = derive2 { name="ddsPLS"; version="1.0.61"; sha256="18q2mzpn0h93bxx1igms379nfs1d28jdngd8y5gcsjyway5yi392"; depends=[doParallel foreach MASS RColorBrewer Rdpack]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.0"; sha256="1wl1pw1rwins4gr47a8ii4diw6wd6cx8ib4l5bhri5f3crbw7l86"; depends=[deSolve gdata gptk]; }; @@ -6023,7 +6039,7 @@ in with self; { decisionSupport = derive2 { name="decisionSupport"; version="1.103.8"; sha256="1xp97v22ar4nsv2q4di6rqfin7pa7a6zqw5d1zmm5aqxfi07nc4x"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; }; deckgl = derive2 { name="deckgl"; version="0.1.8"; sha256="0nm9jf166343sd01mchw2v6qpsfjgdhf6zd2p92rqyhp9k0hq5lv"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; - decoder = derive2 { name="decoder"; version="1.1.12"; sha256="0jacp5fqi3l87a86kzhivwd7bl9ndcpymw1vkzmr9r5my8d119pk"; depends=[backports]; }; + decoder = derive2 { name="decoder"; version="1.1.13"; sha256="1kpcx754djfr8y0flpa1hrr92s0wbxw23rlvb6q3k9absvdvvmg6"; depends=[backports]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; decompr = derive2 { name="decompr"; version="4.5.0"; sha256="1kbk4z1pr1j4i1sgfkjxzjy2j2fcmrf3vacnrpv1fba2ib10619k"; depends=[]; }; decon = derive2 { name="decon"; version="1.2-4"; sha256="1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s"; depends=[]; }; @@ -6042,15 +6058,16 @@ in with self; { degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; }; deisotoper = derive2 { name="deisotoper"; version="0.0.3"; sha256="1263cgwzgl3dnv1y9qhzjl4b7r69h59x38ggb7c8zn7g6qbdc0kc"; depends=[rJava]; }; dejaVu = derive2 { name="dejaVu"; version="0.2.0"; sha256="1cnbgssdnvl092vz0j2n4bamvysrr0n9wy6ycz2mkm5wvf4r296i"; depends=[MASS]; }; - deldir = derive2 { name="deldir"; version="0.1-15"; sha256="0407wfnjcfg7ca6ani96bbg5ksx8jkyijaprv7n4g7w21311242p"; depends=[]; }; + deldir = derive2 { name="deldir"; version="0.1-16"; sha256="0549kj0hlkdyvm5axsm3np30wg53fm2pxybijzw0avlgsd2y2n2q"; depends=[]; }; delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; deming = derive2 { name="deming"; version="1.4"; sha256="1yx3qrbik6jpqgsi0gqgc7y2cra13qlisg2gq8rvnv57nvcvb421"; depends=[boot]; }; + demoGraphic = derive2 { name="demoGraphic"; version="0.1.0"; sha256="0b2fqa0z875wwd7qdqh2qfvkzh2cpbmck4smf9c0p31wv5yin0sq"; depends=[magrittr MASS officer]; }; demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; }; demogR = derive2 { name="demogR"; version="0.6.0"; sha256="06x82ffbdv6ifl8xh52d3npdwha67v1ylfjp78j5pa4wdqkg221b"; depends=[]; }; - demography = derive2 { name="demography"; version="1.20"; sha256="097k0chs8shm1r9ny6jdx2kp2shyxsivjw1n1rhb3bs0m0l3vm9r"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; + demography = derive2 { name="demography"; version="1.21"; sha256="1q5x9kqxdcp1ywi09786qgyz9gld6nk8m859vrm324idpd0n8dca"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; demu = derive2 { name="demu"; version="0.2.0"; sha256="0prfl2i3q2n5f4qpvkksyi8qvwj2fd9v82cr6val7abvcvbn9276"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; dendextend = derive2 { name="dendextend"; version="1.9.0"; sha256="1jiani6zwfajky2vafvay2hq158nh99rdrk3j00lycspds9v35fd"; depends=[fpc ggplot2 magrittr viridis whisker]; }; dendroTools = derive2 { name="dendroTools"; version="1.0.2"; sha256="156iylz62mps24d0lnxwal5nsl4qnysx7m0bb070b45v6x4cp9in"; depends=[brnn Cubist dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly randomForest reshape2 scales]; }; @@ -6077,7 +6094,7 @@ in with self; { descomponer = derive2 { name="descomponer"; version="1.5"; sha256="1dxnvignd3hwagkghvdiqfrkxlhyvxndprcyh8n9pmq8zgask5qk"; depends=[]; }; descr = derive2 { name="descr"; version="1.1.4"; sha256="05maviw8l8qhmy7p80gs3dlyy6pqk5k1686ny4xla4psj8mr7lbk"; depends=[xtable]; }; describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; }; - descriptr = derive2 { name="descriptr"; version="0.4.1"; sha256="1jpcfpidi49lyn02sl0hwsixzln9frrz03vrap1aq0phjcln39hh"; depends=[dplyr forcats ggplot2 magrittr rlang scales shiny tibble tidyr]; }; + descriptr = derive2 { name="descriptr"; version="0.5.0"; sha256="0bbd3h07s4mfhryh6yyvgs4xs0nshxngyapz89jsc1drl3dn6plh"; depends=[cli dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales tibble tidyr vistributions xplorerr]; }; descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; desctable = derive2 { name="desctable"; version="0.1.3"; sha256="1bc0xb7v1fnl91vbrh6xbqxnk1yq5ahxchlxb30dvpkjzycdnr4w"; depends=[dplyr DT htmltools pander purrr]; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; @@ -6095,7 +6112,7 @@ in with self; { detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; detrendr = derive2 { name="detrendr"; version="0.6.0"; sha256="0dlkhyxdxzxlbnw3wa05rykfczmkm45ymfhz1qgad7vzikzd4472"; depends=[assertthat autothresholdr checkmate doParallel dplyr filesstrings foreach glue ijtiff iterators magrittr matrixStats plyr purrr Rcpp RcppParallel rlang sigmoid stringi stringr]; }; detzrcr = derive2 { name="detzrcr"; version="0.2.3"; sha256="09a8x7zphsk06n64qqbh840vrp89sza9vfnz08il6jdy77j02974"; depends=[ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="3.6-1"; sha256="0lhf11bdgizhm2im13d0mc0ca834kg2cyabz92jp4mmhjvglrgf3"; depends=[]; }; + devEMF = derive2 { name="devEMF"; version="3.6-2"; sha256="0q9il3r69g7a9mmxwjvbrqc1w86ji02jq4p8nk07da9axfp8crcy"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; devRate = derive2 { name="devRate"; version="0.1.9"; sha256="1dy9hfhhlxj5sim69870dkwrarrl5pvmfvls8ys43h300my331gp"; depends=[]; }; devtools = derive2 { name="devtools"; version="2.0.1"; sha256="1nyspqicn9zd1rgq3k07b3179i8w5ys6jbd65g9q8qczrb7z3x8f"; depends=[callr cli digest git2r httr jsonlite memoise pkgbuild pkgload rcmdcheck remotes rstudioapi sessioninfo usethis withr]; }; @@ -6105,7 +6122,7 @@ in with self; { df2json = derive2 { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; dfcomb = derive2 { name="dfcomb"; version="2.5-0"; sha256="16wa7shc5rw8sax0x94i0lvg1h4wnq51mqdvsc5z8a5ki84jxlra"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; - dfcrm = derive2 { name="dfcrm"; version="0.2-2"; sha256="1kwgxfqnz2bcicyb27lp6bnvrj30lqjpn5fg7kaqshgkj53g0s4f"; depends=[]; }; + dfcrm = derive2 { name="dfcrm"; version="0.2-2.1"; sha256="01rn3zvi9xljmx48lkclckhnixian1vwq1frr8n784dsclp86spg"; depends=[]; }; dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; dfmeta = derive2 { name="dfmeta"; version="1.0.0"; sha256="0ca48adfhaxac33jmxbynlyg3ak9l5mmjhlr69n4hnz6325gn9vb"; depends=[data_table ggplot2 lme4 plyr]; }; dfmta = derive2 { name="dfmta"; version="1.7-0"; sha256="0ci5faqkrpqkqkl0hrx9j78cid3cr1bs5mlkw4xargf3n4lfgk5j"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; @@ -6148,14 +6165,13 @@ in with self; { diffMeanVar = derive2 { name="diffMeanVar"; version="0.0.6"; sha256="0zivbd22hp0biy4vnjh21f4djfg5bl9az0wlhn47rk7fw65rgipb"; depends=[Biobase lawstat MASS methylumi missMethyl]; }; diffMeshGP = derive2 { name="diffMeshGP"; version="0.1.0"; sha256="1dc37hxh3fi27gw11kij57j78p87bza77s82niagdv6dqhldj5a4"; depends=[]; }; diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; - diffdf = derive2 { name="diffdf"; version="1.0.1"; sha256="05kl841h9lcirp874g7ny1xjijd1dpdqxwyzwwqwpcvibf69pprm"; depends=[tibble]; }; - diffeR = derive2 { name="diffeR"; version="0.0-5"; sha256="1r1klvi83qp5xaxna3l2v48zjj5ngfcrq535m1crnmsjj4iwqilv"; depends=[ggplot2 raster reshape2 rgdal]; }; + diffdf = derive2 { name="diffdf"; version="1.0.2"; sha256="13jx8lx9y9h5lmm023z619l6j5d0q005s8khg6zb0hw3i81wri4x"; depends=[tibble]; }; + diffeR = derive2 { name="diffeR"; version="0.0-6"; sha256="0ivdcfirs3jbd6m3rryq590szkhplm2kr9chjgcgd88ar5nrqfg7"; depends=[ggplot2 raster reshape2 rgdal]; }; diffee = derive2 { name="diffee"; version="1.1.0"; sha256="01lb1prz70mxgymhhsvx48kbfy69xyyaabsmfhf28af9wfb89662"; depends=[igraph pcaPP]; }; diffeqr = derive2 { name="diffeqr"; version="0.1.1"; sha256="1zvjl2i38nyhk63bncqc5cva1m40sm692w7a36qc455s2jnskfh8"; depends=[JuliaCall stringr]; }; - diffobj = derive2 { name="diffobj"; version="0.1.11"; sha256="1aqdb4q3zixf2xg9q0387vp2xrmfwl7h5j5wnlr0mxwbxv8423ly"; depends=[crayon]; }; + diffobj = derive2 { name="diffobj"; version="0.2.1"; sha256="1bs00dglymwmilhbaik1pz3ivswd8kzi2my1gxq7k4lfkpamgsmx"; depends=[crayon]; }; diffpriv = derive2 { name="diffpriv"; version="0.4.2"; sha256="12q2v93369bshid83rsy1csbr9ay6rfpd8zdxm12zi7py3f9sjs8"; depends=[gsl]; }; diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; }; - diffractometry = derive2 { name="diffractometry"; version="0.1-10"; sha256="09mkqg6avky26c2dsnhpcmby76hfqg0pwmnjhkbp4px2k6c9inrc"; depends=[]; }; diffrprojects = derive2 { name="diffrprojects"; version="0.1.14"; sha256="1mnqf5zs1w8dx9y5iwn4blyzb9j60ayzc04zxj5l8804nd527n25"; depends=[dplyr hellno magrittr R6 Rcpp RSQLite rtext stringb stringdist]; }; diffrprojectswidget = derive2 { name="diffrprojectswidget"; version="0.1.5"; sha256="1h69mc1wayi80vz4b9cqydylf4kp9mxsigv05r0f903pqakdrzcw"; depends=[diffrprojects dplyr hellno htmlwidgets jsonlite magrittr tidyr]; }; diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; @@ -6166,10 +6182,10 @@ in with self; { digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; }; dimRed = derive2 { name="dimRed"; version="0.2.2"; sha256="0ssy2qriiy6zdawriqcbl67qiq68ipml3frq7aqlq70r2fqyyw48"; depends=[DRR magrittr]; }; - dina = derive2 { name="dina"; version="1.0.2"; sha256="1dgjny7ik2g15zbi3ywl0xbab6vnv5qkxfrb4x79w7lic5m90ldc"; depends=[Rcpp RcppArmadillo]; }; + dina = derive2 { name="dina"; version="2.0.0"; sha256="1sq7998xc5qhvd8clc8r32ch7axinh2a2dc7i1w2p148wv130yhd"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; - dint = derive2 { name="dint"; version="2.0.0"; sha256="1rrkf1j7vdnxskmjzh41shwxmcy624qrhipfpdvp76ijf1hf32vk"; depends=[]; }; + dint = derive2 { name="dint"; version="2.1.0"; sha256="1ckrjv0c9vqz7drbkmp5lapkikzgll1jbnh51qn59dc1acc5zhvn"; depends=[]; }; diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; }; directlabels = derive2 { name="directlabels"; version="2018.05.22"; sha256="0xcpc56ssb9430b0xcdhayk3qaak2qcakyss2pz14y5w2027hblv"; depends=[quadprog]; }; @@ -6180,7 +6196,7 @@ in with self; { discSurv = derive2 { name="discSurv"; version="1.3.4"; sha256="0xawvadgy5lkzhk60kb4ga1gh4niqpr9p6wxgrp88mbwp7q600kl"; depends=[functional mgcv mvtnorm]; }; discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; }; disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; - disclapmix = derive2 { name="disclapmix"; version="1.7"; sha256="11qkk5bl5x3axyfdzm1hw522g643mmvk5qg7g3sc3licfvsn32i1"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; + disclapmix = derive2 { name="disclapmix"; version="1.7.2"; sha256="05fwr03w62yd643hc1py5aw96wpl5v4mc4frk9hypyraj1y9amw5"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; }; discord = derive2 { name="discord"; version="0.1"; sha256="0nrjpl7l9lzkn92fwzaj3vh8zv2b6706gnh5c4zalkld0xac3c23"; depends=[dplyr]; }; discoveR = derive2 { name="discoveR"; version="1.0.1"; sha256="01gv2hsff3zvhmmqy91dnyr51ks325dmmcd7gjm2vxkkk8cj5i7v"; depends=[colourpicker corrplot dendextend DT factoextra FactoMineR future ggdendro ggplot2 knitr promises raster reshape rgdal rmarkdown rstudioapi scatterplot3d shiny shinyAce shinydashboard shinydashboardPlus shinyjs shinyWidgets stringi stringr zip]; }; @@ -6220,10 +6236,10 @@ in with self; { distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; }; distreg_vis = derive2 { name="distreg.vis"; version="1.0.1"; sha256="1pyqj3dl5yaj2dq0fja7rrsrdpaxjvg28lzk3jhgy0i3ryr6x37k"; depends=[bamlss formatR gamlss gamlss_dist ggplot2 magrittr mvtnorm RColorBrewer rhandsontable shiny viridis]; }; distrom = derive2 { name="distrom"; version="1.0"; sha256="0wylw7yaylf5j8cy8g45jrw91mwx6w0i7vf9ysnj5kxyznq1gl6y"; depends=[gamlr Matrix]; }; - distrr = derive2 { name="distrr"; version="0.0.4"; sha256="0nywvgcbk2i2n2qa80yk68zikl2fs7nybhq540808rjksldh9pvy"; depends=[dplyr lazyeval magrittr tidyr]; }; - divDyn = derive2 { name="divDyn"; version="0.6.1"; sha256="04l342jz34q3fcmibdj0zr53w6zp65p3al0w1qd8diq09z1388gc"; depends=[Rcpp]; }; + distrr = derive2 { name="distrr"; version="0.0.5"; sha256="06zmknpdldh4yy3gd1ki6p856pwllb605z1142j4kqxj2ni3lkq7"; depends=[dplyr magrittr rlang tidyr]; }; + divDyn = derive2 { name="divDyn"; version="0.7.0"; sha256="01hr061hcrnqsy944pr8k4003rbvszdrnl2ajjda8s1wmj0i500j"; depends=[Rcpp]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; - diveMove = derive2 { name="diveMove"; version="1.4.4"; sha256="0mq3nkcn1w8mry9lda6fkycb1a5qmkyzpckwxbrvsyc5kyyx755c"; depends=[caTools geosphere KernSmooth quantreg uniReg]; }; + diveMove = derive2 { name="diveMove"; version="1.4.5"; sha256="0lik5r5y7q5r7gh9d9y9r2m8vvibn13dp9p50j0hpzk67wgw3vya"; depends=[geosphere KernSmooth quantreg uniReg]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; diversitree = derive2 { name="diversitree"; version="0.9-10"; sha256="0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"; depends=[ape deSolve Rcpp subplex]; }; @@ -6236,9 +6252,9 @@ in with self; { dlib = derive2 { name="dlib"; version="1.0.3"; sha256="1is8j1gwf22n7yixg40rb6p4mrnbzijwfjl6vsniq8qkyy7z8k32"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlmap = derive2 { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; }; - dlnm = derive2 { name="dlnm"; version="2.3.6"; sha256="0yh964536zh57pcj6q2b172j57pdk4jzf78281jym81j6qxwf2fb"; depends=[mgcv nlme tsModel]; }; + dlnm = derive2 { name="dlnm"; version="2.3.8"; sha256="0666jfbx3yhxwknfc4lwn7ys7iyc5vdjvv694sn4gqv1k87p568r"; depends=[mgcv nlme tsModel]; }; dlookr = derive2 { name="dlookr"; version="0.3.2"; sha256="0cm48nzj5zbs2db39w9f2gk9wh813ib48hnfhcbp8f833xd5x72n"; depends=[classInt corrplot dbplyr DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr randomForest RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; }; - dlsem = derive2 { name="dlsem"; version="2.4"; sha256="1q4acqlnirr5mk1k4ljzkhmx23a76w7gj98qd3c2s3qlqrsf6xvw"; depends=[graph Rgraphviz]; }; + dlsem = derive2 { name="dlsem"; version="2.4.1"; sha256="0baklvzcyp7byxq1l003i25ciysiscsyrb7w5jqyhg8zzy2j452h"; depends=[graph Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.0"; sha256="0s92rdpw3m534wgjaic4srsp9i1pa3ibfmr4h7p3ly51zhza6l5h"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmai = derive2 { name="dmai"; version="0.1.0"; sha256="0k5c5jb98195mr1gcra6mg887faj8f2g303rzk0izsi4yzw6rm7n"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; @@ -6251,7 +6267,7 @@ in with self; { dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.4"; sha256="0hzaa308pppq2cqpb067f3y3nyv1p2xdmgy3dykf90psnn5v011p"; depends=[arm ergm glmnet igraph network sna]; }; doBy = derive2 { name="doBy"; version="4.6-2"; sha256="02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb"; depends=[dplyr magrittr MASS Matrix plyr]; }; - doFuture = derive2 { name="doFuture"; version="0.6.0"; sha256="04pvs2h1ibdbl6cph30rvdn5vzj9afllvh8f0iy64pgy83vls790"; depends=[foreach future iterators]; }; + doFuture = derive2 { name="doFuture"; version="0.7.0"; sha256="1q7x1fl8yji5xyy55476l61jah17lh08j87fb6xba87xja2lq3r0"; depends=[foreach future globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.5"; sha256="1vfrykvfvsyq12mypd266867ml1dcwc3rj5k9c3wrn5bddcm88kr"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.14"; sha256="01qjs4iw9f1kgymcypj0m2s4pvgqhxaycpli0fb8lq3dc0vpzfyb"; depends=[foreach iterators]; }; @@ -6268,23 +6284,26 @@ in with self; { documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; document = derive2 { name="document"; version="3.1.0"; sha256="05cks0yrjwkbpdcx0llh2p7fi4xybmrrqflw21sq8w0pivjkpwc6"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; docxtools = derive2 { name="docxtools"; version="0.2.0"; sha256="0mz71d4hppnp7i67a202x19hcgs99lbslkkfqa2k7npzl4dxj5sr"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; - docxtractr = derive2 { name="docxtractr"; version="0.5.0"; sha256="079lm7dbhnwx0aj4df777ws7dmhag2n9f4w17v146rkp2z2l4ym1"; depends=[dplyr httr purrr tibble xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.1.1"; sha256="187530rrz8ij1wy21zf8drppqh1yml6q01q40b60pzkf1mqp3w5m"; depends=[igraph magrittr osmdata rbenchmark Rcpp RcppParallel sp]; }; + docxtractr = derive2 { name="docxtractr"; version="0.6.1"; sha256="03bcaiwxxybbdxh26rp4bl66aiv4hxmgn21w6dxm383xha03iqfw"; depends=[dplyr httr magrittr purrr xml2]; }; + dodgr = derive2 { name="dodgr"; version="0.1.2"; sha256="1jg50614pjmkw090kbr9xdcbyf2p7rmgv6nwvv94b8x4nk9cv1yr"; depends=[igraph magrittr osmdata rbenchmark Rcpp RcppParallel sp]; }; doex = derive2 { name="doex"; version="1.0.0"; sha256="1d70pb0wxc47z401ya2awjpx0rgipicxgbvkhwinx2mg0jpa8kki"; depends=[]; }; + dominanceanalysis = derive2 { name="dominanceanalysis"; version="1.0.0"; sha256="1870qg17jiq1g2693d912y5jxp2b2692hfdg2qbqa0h2w0lf0lx1"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; doremi = derive2 { name="doremi"; version="0.1.0"; sha256="0qqg0kl806gsidcigwggpx1g5p691b4300dfipiv4cfxp0pl5r1k"; depends=[data_table ggplot2 lme4 lmerTest zoo]; }; + dosearch = derive2 { name="dosearch"; version="1.0"; sha256="05hicbald3n654mg86mchgp9hnp6ph823jzkg1iyd88x4lrq4dib"; depends=[Rcpp]; }; dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; dotCall64 = derive2 { name="dotCall64"; version="1.0-0"; sha256="1b8p7m3w0m7bp977c6jz74xkd611cxg11j49yza59k5fp338scb9"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.5.0"; sha256="034pvkc59jdjl27wirgb2cv84ajw5y2if20njzzp87nd4f9bb6br"; depends=[broom dplyr ggplot2 ggstance gtable purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; - double_truncation = derive2 { name="double.truncation"; version="1.3"; sha256="0afb3q4ing0a8v2hh7gcmpxx7varw7v6nkf06a32chgzxbr3qmqc"; depends=[]; }; + double_truncation = derive2 { name="double.truncation"; version="1.4"; sha256="190fwl119ycmiszkq0mqc6dh8adwqx7b0ipmhz71qvqdzgh9gjm9"; depends=[]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downscale = derive2 { name="downscale"; version="3.0-1"; sha256="0kmv4d5fa6mmhmbfqfxzk1gv55j15d7madsdqi8470bwh0kkya4y"; depends=[cubature minpack_lm raster Rmpfr sp]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; dparser = derive2 { name="dparser"; version="0.1.8"; sha256="1yx425s3iq03j043g41pyfp3cgmajb4qh50zirhd0qpplzwy8xj5"; depends=[digest]; }; + dpcR = derive2 { name="dpcR"; version="0.5"; sha256="17l9g11qqs2fkskg331889m8nkkrwzrq0n684rdn62pnd5j2n5pi"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; dpcid = derive2 { name="dpcid"; version="1.0"; sha256="1gx8gyrxvm07mjiasl0b80y0x3crq6gy170v6s817d11jw44n86z"; depends=[]; }; dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; dplR = derive2 { name="dplR"; version="1.6.9"; sha256="0pb2f0f09qwi6az7c0pp28jhv5cgdfy4wqwfsqgkq5nlzlbkbnri"; depends=[animation digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; @@ -6295,17 +6314,16 @@ in with self; { dpmixsim = derive2 { name="dpmixsim"; version="0.0-9"; sha256="064i122j8vkpjxzfrhp25kb6nv5j3a7s8qk0202x7vnvj9caqjvx"; depends=[cluster oro_nifti]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dprint = derive2 { name="dprint"; version="0.0.4"; sha256="13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"; depends=[]; }; - dqrng = derive2 { name="dqrng"; version="0.0.4"; sha256="0qkpyr7gc3m704znfv011l19s8qsnq42rn8p43qsakvndfyqynbb"; depends=[BH Rcpp]; }; - dqshiny = derive2 { name="dqshiny"; version="0.0.1"; sha256="1dsi0n7r8gpjq1wvs22vk31w1javh1ikc52h36b9jy58h9x24gsa"; depends=[htmltools shiny]; }; + dqrng = derive2 { name="dqrng"; version="0.0.5"; sha256="07nh59y65radpa53ck0m1r3mxfhr85bdlr0a0f40sjbbjwyfaq0s"; depends=[BH Rcpp sitmo]; }; + dqshiny = derive2 { name="dqshiny"; version="0.0.3"; sha256="1fra6fbv8if7wwr8vi3261rdzv4kj99y841lb9xiv1mh72r3mx58"; depends=[htmltools shiny]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; - dr4pl = derive2 { name="dr4pl"; version="1.1.7.4"; sha256="1vxfvnc04ia9zk328qnv7n0m7libxnhb6rfvadi6w09ww49dqpmb"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; }; + dr4pl = derive2 { name="dr4pl"; version="1.1.7.5"; sha256="1qjkfax3ai70ha5kgwjhxqpni6ylcwa2qn039biz01lvbrzaknsd"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; drake = derive2 { name="drake"; version="6.2.1"; sha256="1g6dhcrls5zyxlqp3155k9cjh25zbnq02fv654z48pid6bbsni7n"; depends=[codetools digest formatR igraph pkgconfig rlang storr tibble]; }; drat = derive2 { name="drat"; version="0.1.4"; sha256="0vrpqf793vinx4v7jrbn910iplvpmrlwhdjqqzx8cl2k9hl43x08"; depends=[]; }; draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; }; - drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; drfit = derive2 { name="drfit"; version="0.7.2"; sha256="03ahzmjzrkdrv36yj6vfg3g5bwn6lb7mlxmli68sixag5h83xq7f"; depends=[DBI drc MASS odbc qcc reshape2]; }; drgee = derive2 { name="drgee"; version="1.1.6"; sha256="01404mqvkvndn5gybq8dgkfc1cy9wk94p7k7i64h47w3zbkcwsax"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; @@ -6317,14 +6335,14 @@ in with self; { drtmle = derive2 { name="drtmle"; version="1.0.4"; sha256="0k8cps3kpfrlv33a0czjp327qzdj69lwbpv4k5q7qjcv0878yypg"; depends=[doFuture future future_apply future_batchtools np plyr SuperLearner]; }; drugCombo = derive2 { name="drugCombo"; version="1.0.3"; sha256="03hlv6alhjd84liixb7nqcfgyhcr59bjni049h71jpicqzci2qk9"; depends=[BIGL Deriv ggplot2 minpack_lm nlme rgl]; }; ds = derive2 { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; }; - dsa = derive2 { name="dsa"; version="0.60.32"; sha256="0jl21a81i047igmwxxalflfcvkmsl6gh61balkyj50vxv4v4l8x8"; depends=[dygraphs extrafont forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava timeDate tsoutliers xtable xts zoo]; }; + dsa = derive2 { name="dsa"; version="0.61.7"; sha256="0d4i9r6arbks6gynxd90ccnk2bc9x2xl20khc8f4in79mhd3lkm1"; depends=[dygraphs extrafont forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava timeDate tsoutliers xtable xts zoo]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dse = derive2 { name="dse"; version="2015.12-1"; sha256="1976h57zallhzq43nshg77bsykcvkfwnasha1w59c44fjpl1gs9w"; depends=[setRNG tfplot tframe]; }; dslabs = derive2 { name="dslabs"; version="0.5.2"; sha256="1igzn6g9sgbmvqbqq588573618ii9ki3gda9b2hi9r8ljpgys8h6"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; - dsm = derive2 { name="dsm"; version="2.2.16"; sha256="1glw3pwgar9qadjya615n5n10lg7xvclcnr3k9vn8y3fgid22f80"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; + dsm = derive2 { name="dsm"; version="2.2.17"; sha256="0n2nn05zb8zd2wah1cfzv8a9qwbh6an3jwsfy0x6lbkk63bs5mxw"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmodels = derive2 { name="dsmodels"; version="1.1.0"; sha256="0gidxi4ph49mjm2hdf9flphfb9916al4cpdkiig504n7ms2sbpbg"; depends=[latex2exp pryr shape]; }; - dsr = derive2 { name="dsr"; version="0.1.0"; sha256="0iyy0axjbxbhy9hriwgnz96ryb1qvjm1gj62rmi27386ag2knf43"; depends=[dplyr rlang]; }; + dsr = derive2 { name="dsr"; version="0.2.1"; sha256="0vkj41w7hqxdiv0v1hn24fisfmp2hjz7bwfv4abl9j4ngh6hq5f5"; depends=[dplyr frailtypack rlang]; }; dsrTest = derive2 { name="dsrTest"; version="0.2.1"; sha256="1kljlfi7jf6fa8b5f3wxjsa9rlmzcp4qix3m2qyapz2lqd85mbb7"; depends=[asht exactci loglognorm]; }; dst = derive2 { name="dst"; version="1.3.0"; sha256="1pck09g2430d08x2f72zc2zxx6yaybcpzramjvjldwj1kmz32l1w"; depends=[]; }; dtables = derive2 { name="dtables"; version="0.2.0"; sha256="0ikgip3p4b7q97b2dshlx0fq09xsk304gfk5prw4rk95w9wck3qs"; depends=[psych]; }; @@ -6335,7 +6353,7 @@ in with self; { dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive2 { name="dtw"; version="1.20-1"; sha256="1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"; depends=[proxy]; }; - dtwSat = derive2 { name="dtwSat"; version="0.2.4"; sha256="1yvl64z3dp4qyii4p8phbk1g1l10q9fbickj0xzzvg2q1xmjps91"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales snow sp xtable zoo]; }; + dtwSat = derive2 { name="dtwSat"; version="0.2.5"; sha256="0qvjzqmi6plkq5l4r52c7wil58n41l5f5dxzpk9r4yis8bdm5zlq"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales snow sp xtable zoo]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.1"; sha256="12wz5pzmafq3vzfr5bm6kkqfn2fg9qb7z0c5csn9r1w8ijidsyg4"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.3"; sha256="0swvrdwnbyigsvds3s32nw79b245q3cgv7xskjx7qjcpnvzr7x7q"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; @@ -6357,23 +6375,23 @@ in with self; { dynamac = derive2 { name="dynamac"; version="0.1.6"; sha256="1awi9rq4kgxmvwwq9n6vxkjpcqy563h99ran0gzgvb0k6bri5pp3"; depends=[lmtest MASS]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; - dynamichazard = derive2 { name="dynamichazard"; version="0.6.1"; sha256="0xwvfpw0djnzi4igim8g32s233f5xf53pskg5w4xwnqja7x6w8v2"; depends=[boot Rcpp RcppArmadillo survival]; }; + dynamichazard = derive2 { name="dynamichazard"; version="0.6.3"; sha256="0flbvsgh5vqfs4lbhn5arjyhz7lah2hclax59pjp9za2gl73vnsn"; depends=[boot Rcpp RcppArmadillo survival]; }; dynamo = derive2 { name="dynamo"; version="1.0"; sha256="0arsv686ix7xpca57ayqgifim1q35dl4w2mx7fw8bc0lidapilyp"; depends=[abind glamlasso MortalitySmooth Rcpp RcppArmadillo]; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; dynfrail = derive2 { name="dynfrail"; version="0.5.2"; sha256="1q7ml24j0ycy2bwpa14vl96315ni7x9rfp0qmf36w00mylgc3ry6"; depends=[dplyr magrittr Rcpp RcppArmadillo survival tibble tidyr]; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; }; - dynlm = derive2 { name="dynlm"; version="0.3-5"; sha256="1sjhhlvvcgmayb9dfwacv1g75c4lhbpzyczj6h7gkd19bcfbdhqp"; depends=[car lmtest zoo]; }; + dynlm = derive2 { name="dynlm"; version="0.3-6"; sha256="1g8qsb5m69yn35sm0shd97vbnbpqfkjkd7lbkwch1gpfxkld53zq"; depends=[car lmtest zoo]; }; dynpanel = derive2 { name="dynpanel"; version="0.1.0"; sha256="073kfl5g4d7v8wd2qnpixqrxbac3cqj35z03ax2zlb8h2afa7j62"; depends=[gtools]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynprog = derive2 { name="dynprog"; version="0.1.0"; sha256="1rvn2zyhdi60y01zbvfv4him6iz2ljdr7ivkr7m7y7yd1lg547ax"; depends=[rlang]; }; dynr = derive2 { name="dynr"; version="0.1.13-4"; sha256="11qs6zj73y8x1pvlnq09f1sapdg9b933a45il0p8w23zj1232205"; depends=[ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 xtable]; }; - dynsbm = derive2 { name="dynsbm"; version="0.5"; sha256="01vi4qzgp25l4wg2ij9pqrn775x4yj9gck0l397nwjg96pa7x2lz"; depends=[RColorBrewer Rcpp riverplot]; }; + dynsbm = derive2 { name="dynsbm"; version="0.6"; sha256="0sdy42ihymhzx577jc2qr7lwirc9lviz3sagfy09zhbwizz5a4kw"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.3-6"; sha256="12bfv6bykgsyxryydhjs89yvk7akam5gy89mzn1hv4ilrpc5mlmw"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; - dynutils = derive2 { name="dynutils"; version="1.0.0"; sha256="182k67zkn1gq91h405f0csw71qs5apf92ddrbh8274nmar8hnha4"; depends=[crayon desc devtools dplyr glue magrittr processx purrr Rcpp stringr testthat tibble tidyr]; }; - e1071 = derive2 { name="e1071"; version="1.7-0"; sha256="0fk4pw67cw1663d0n9rf1qfdqzz8k5nqkjgp3hi5jr422qp9lsck"; depends=[class]; }; + dynutils = derive2 { name="dynutils"; version="1.0.1"; sha256="1kg6rpvkz90652w3kwaxyddlkjcyv8pr2qcaba0780zybnqskvl9"; depends=[assertthat crayon desc devtools dplyr glue magrittr purrr Rcpp stringr testthat tibble tidyr]; }; + e1071 = derive2 { name="e1071"; version="1.7-0.1"; sha256="11fqm4shmksalkazcwvzfknp3amigw7fr8wdwanqa5v5kx7ihyq9"; depends=[class]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.4"; sha256="15hhd4q2yxzq3a3awvk81ixa43hk519ym8ap7v1ahghyr0njnyyf"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard shinytest shinyWidgets]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; @@ -6386,17 +6404,17 @@ in with self; { earlyR = derive2 { name="earlyR"; version="0.0.1"; sha256="14davqhh3n5dfsddnfd79ni56bssrpwhvkqkdb77a8x9fn8w32pv"; depends=[distcrete EpiEstim epitrix]; }; earlygating = derive2 { name="earlygating"; version="1.0"; sha256="0y6xjkh9p8bvanc9p5sycah8v81k85xr8i7vyvjb9g4a64srwhd7"; depends=[betareg doParallel foreach]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; - earth = derive2 { name="earth"; version="4.6.3"; sha256="0af02qi3np40p90v0npnwqa5dg2zszky6kjx9zjw7id7jw5kx1m6"; depends=[plotmo TeachingDemos]; }; - earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; }; + earth = derive2 { name="earth"; version="4.7.0"; sha256="046n5p3mbz09m5l41h7sc80203p9vpkjyx8z36v82ya2s8bkfv44"; depends=[plotmo TeachingDemos]; }; + earthtones = derive2 { name="earthtones"; version="0.1.1"; sha256="17biiw0ig8i8ihc2f8csp0bqryygg27ic2v1vrf81ax3qzhngy4l"; depends=[ggmap]; }; easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; easyCODA = derive2 { name="easyCODA"; version="0.28"; sha256="1qw5kw8qx210f7n7395cs2bh7jl204wr69f99qs6x9ssg8n4g68q"; depends=[ca vegan]; }; easyDes = derive2 { name="easyDes"; version="4.0"; sha256="1lfkkkwlj444md7xp2zzx0ai976yxq6xp3v2a42pwgzs1fcafwal"; depends=[multcomp PMCMRplus]; }; easyNCDF = derive2 { name="easyNCDF"; version="0.0.4"; sha256="1hd7b6pdm5j41a4v0jxhbqdy2bz5gj86fsfwj0l7gg7h32d6hkhq"; depends=[abind ncdf4]; }; - easyPubMed = derive2 { name="easyPubMed"; version="2.5"; sha256="08b94pcya9bmnsipd1jn95dpadw2aqb0fnvm68n11mwg40hd272j"; depends=[XML]; }; + easyPubMed = derive2 { name="easyPubMed"; version="2.11"; sha256="0k9j7m27p60pbynx4hbzr30m8w0sh136jsdk8jlpkzyka06w4ig4"; depends=[]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; easySdcTable = derive2 { name="easySdcTable"; version="0.3.1"; sha256="0z0fq73m7vjc8wry633lvz58r2c6a6zz6w867hij1627c74mjhs4"; depends=[sdcTable shiny SSBtools]; }; easyVerification = derive2 { name="easyVerification"; version="0.4.4"; sha256="08mih1arx01vj7cs1jsln644pcvslpyw1rgr6jmv2czr6xd8qb7d"; depends=[pbapply Rcpp SpecsVerification]; }; - easyalluvial = derive2 { name="easyalluvial"; version="0.1.7"; sha256="0856lrb5lq6m3bj33yjf6lj6sk36a91wp4r4j7j4nl84ix0701g6"; depends=[dplyr forcats ggalluvial ggplot2 magrittr purrr RColorBrewer recipes rlang stringr tibble tidyr]; }; + easyalluvial = derive2 { name="easyalluvial"; version="0.1.8"; sha256="12ham1dg571mfvqwz6i7kqz7s0h2zg0dm409bpk5lf1lqv37z012"; depends=[dplyr forcats ggalluvial ggplot2 magrittr purrr RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="6.0"; sha256="16cypapzrsf70wrpd0rq00kks96rx3kiqnxswd410l6ss2gnni7h"; depends=[car emmeans lme4 lmerTest]; }; easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; easyformatr = derive2 { name="easyformatr"; version="0.1.2"; sha256="0mrpd21hyafn82apclxmhs2jbd87sdw0g6lwc3h6gl5cbm213nxb"; depends=[dplyr knitr lazyeval magrittr stringi tibble tidyr]; }; @@ -6415,19 +6433,21 @@ in with self; { ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-10"; sha256="1n6wvz463w0ainn9a52arjhs5q9pwciknb5328pr6y287fwa3nnn"; depends=[spatstat]; }; - echarts4r = derive2 { name="echarts4r"; version="0.2.0"; sha256="075iqrgynmnxp73ylhzynz4j4ibiq12d66dpcwmhzcw6cn6idk6f"; depends=[broom countrycode d3r dplyr htmlwidgets magrittr purrr scales shiny]; }; + echarts4r = derive2 { name="echarts4r"; version="0.2.1"; sha256="0lgif7lmnq49lz0prh8r2rszkcm63mpwjphzfn16kbw9vxkbbp1s"; depends=[broom countrycode d3r dplyr htmlwidgets magrittr purrr scales shiny]; }; echo_find = derive2 { name="echo.find"; version="2.0"; sha256="02cvm2ivga8bllkmdj7fljxvrmlpckqf03pl31z2r1zzjpwxx7cy"; depends=[minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.1"; sha256="0f93s9f1ghin8129vb3bvsp7jmy2hfrx97p86hci8b2y4f7b83qh"; depends=[geosphere readHAC]; }; - echor = derive2 { name="echor"; version="0.1.1"; sha256="1mc0qng9nqkvbpyklhf0a0fpgww8x88cgb29gmf1v7zycs1ch1m9"; depends=[dplyr geojsonsf httr lubridate plyr purrr readr tibble tidyr]; }; + echor = derive2 { name="echor"; version="0.1.2"; sha256="1b2d8xbjnj3daqini1i3hccnpng0ilz9m6rk6ns8qvz7kpaxkjmn"; depends=[dplyr geojsonsf httr lubridate plyr purrr readr rlang tibble tidyr]; }; ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; - ecm = derive2 { name="ecm"; version="4.3.0"; sha256="0nck8hfiqpkq8wm2jrzxi12aq9pnq58wgaizygdqf2m40bjz47gv"; depends=[car]; }; + ecm = derive2 { name="ecm"; version="4.4.0"; sha256="1f9x3lcihvnkc5fr4g94h0m5a9h4rjmq9hkjs34il2id8bw92gj7"; depends=[car]; }; + ecmwfr = derive2 { name="ecmwfr"; version="1.1.0"; sha256="03xqrf6c8r9ia4i8vavnp266m5j72208kq72w9f62n9bmgdhy152"; depends=[httr keyring memoise]; }; eco = derive2 { name="eco"; version="4.0-1"; sha256="08fblbr9qp2v0cp69hy68c18xjqvx0nsnx42n2vd1gc6r7apapj6"; depends=[MASS]; }; ecodist = derive2 { name="ecodist"; version="2.0.1"; sha256="04piv52b4b9rgv1gy6s3b1lzapc0rqiwp1yi7f8yzgjd9329kc5g"; depends=[]; }; ecoengine = derive2 { name="ecoengine"; version="1.11.0"; sha256="1d5x6hvqrqjj0wg07m4dbgb9ljdq73ibavzy2q5magnfn50a7rzm"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; econet = derive2 { name="econet"; version="0.1.81"; sha256="0hm1v4fjzyzdaxiw6lar7fxnqsckis3n7nrsravhbllhcf0aqq7w"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; }; + econetwork = derive2 { name="econetwork"; version="0.1"; sha256="0zzfqzi1nqczxkdqzqa5hblxysjfbn5ad1wrynaziq7b3qgyivwa"; depends=[igraph Matrix_utils rdiversity]; }; econullnetr = derive2 { name="econullnetr"; version="0.1.0"; sha256="0l4qy7x8f8sjc3s1bhz3kadfqifw0x9jl7dvcjwkh9q14h093cz5"; depends=[bipartite gtools reshape2]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.2"; sha256="1yzyqvhshgc7ip251y7hsvip4xwf8i92bvvz84mn0mzv5b4mq3im"; depends=[]; }; ecoseries = derive2 { name="ecoseries"; version="0.1.5"; sha256="1q35hp5hl6z28hns5rnp3mjn6hqp5qh714pagw7fw4d4a6wnvacy"; depends=[magrittr RCurl readr rjson rvest tibble xml2 zoo]; }; @@ -6462,7 +6482,6 @@ in with self; { edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.2"; sha256="105jv2sz10xbl881lkhgmxzgmb8629mqsminhd197khrkf9nv40i"; depends=[lasso2 MASS mvtnorm rgl]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; - eechidna = derive2 { name="eechidna"; version="1.1"; sha256="01c1b41fzkq1hgg7705n96m1ji74gbfy9fisdj5pl0kgjhjiq24w"; depends=[dplyr ggplot2 ggthemes plotly rgdal rmapshaper rvest shiny shinyjs tidyr xml2]; }; eefAnalytics = derive2 { name="eefAnalytics"; version="1.0.6"; sha256="07wpz8zlgkbzkhmv569w7rnz3i830391arrh17sg2gc4fx9h1559"; depends=[geoR lme4 metafor mvtnorm]; }; eegkit = derive2 { name="eegkit"; version="1.0-4"; sha256="1r1lack4ps9hwqq56rq37431rcxf3x79zgvda6vrmh4s0ziy6v4x"; depends=[bigsplines eegkitdata ica rgl signal]; }; eegkitdata = derive2 { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; @@ -6470,7 +6489,7 @@ in with self; { eemR = derive2 { name="eemR"; version="0.1.5"; sha256="13c5k2si8aq2461iz9413hlqzgkb25zrdfvizzk8s2nn60npyaw9"; depends=[dplyr pracma R_matlab readr rlist stringr viridis]; }; eeptools = derive2 { name="eeptools"; version="1.2.1"; sha256="0idrwh6khz1sbslx35kmm6f79njam0xl48r3aiy70p2l569rj89h"; depends=[arm data_table ggplot2 maptools vcd]; }; eesim = derive2 { name="eesim"; version="0.1.0"; sha256="0ljj1jp9cl0im8k7sfjd28ggj4q9a14df3554kwxkssr1vsn1wbc"; depends=[dplyr lubridate purrr viridis]; }; - effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; }; + effectFusion = derive2 { name="effectFusion"; version="1.1.1"; sha256="1z3m1wadl5qs37mbj335xghinji9qx9njrd9ckvz63xh1sgpz89i"; depends=[bayesm cluster ggplot2 GreedyEPL gridExtra MASS Matrix mcclust]; }; effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; }; effects = derive2 { name="effects"; version="4.1-0"; sha256="01c970619y27w4w8bq7i8f7sb324rk2jds229x0vb5r5827bpqb3"; depends=[carData colorspace estimability lattice lme4 nnet survey]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; @@ -6482,9 +6501,9 @@ in with self; { egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; egg = derive2 { name="egg"; version="0.4.2"; sha256="0ihq8r2hfxj59mswrxb296shz9981wwmywhbnpxrpkmbia701nny"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="2.1-2"; sha256="042asp2gb3pz47mri5cnh5xsy80j67djll7494cwkbbcwrv6w3wp"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders testthat]; }; - egoTERGM = derive2 { name="egoTERGM"; version="2.0.1"; sha256="06yq951cgb1qkily13a3n3kjzpydcbzr8kdsg4mbp1z66nk40izd"; depends=[boot btergm ergm GGally Matrix network sna speedglm xergm_common]; }; + egoTERGM = derive2 { name="egoTERGM"; version="2.1.0"; sha256="047bgransn23vxhl472cj72ghf8wp3vvh1037rc3j0a0hlpfqabn"; depends=[boot btergm ergm GGally Matrix network sna speedglm xergm_common]; }; egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; - egor = derive2 { name="egor"; version="0.18.08-02"; sha256="14jhj1lj5bdsf64zq9gia63h0p3i9211dnla9g7r0dmlbbygwqgf"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; }; + egor = derive2 { name="egor"; version="0.19.1"; sha256="0sfms7yvdhqk5qn9dh4j1fp8b2md6l04hdv2psjdzhqyxl29bxfw"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; }; eha = derive2 { name="eha"; version="2.6.0"; sha256="0nw72jcwcx2rzlzsrmdvg7pymyzf5icynidlr1m9b70v6rnqr84b"; depends=[survival]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; eiCompare = derive2 { name="eiCompare"; version="2.1"; sha256="0kv4k1zk1gz3fapy2i2ydy0n38hy95i10r3hr3dx8mkkf3nsj46h"; depends=[cubature data_table ei eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; @@ -6502,9 +6521,9 @@ in with self; { elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; elasticnet = derive2 { name="elasticnet"; version="1.1.1"; sha256="0p9dplnsp28z4s2fl6afbwrgd0aj339fak8mmndicmrh7bb7rpmb"; depends=[lars]; }; elasticsearchr = derive2 { name="elasticsearchr"; version="0.2.3"; sha256="0rsg4h8sz18hgwc77g6krx67izr562jjgl4m68pg1saqafmmg3zp"; depends=[httr jsonlite]; }; - elec = derive2 { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; }; + elec = derive2 { name="elec"; version="0.1.2.1"; sha256="1gk75y83n6hvv36fp1n6kncln35j6f3ahasnzhc4fp71aq6q6vjf"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; - elect = derive2 { name="elect"; version="1.1.2"; sha256="1m79z697abzrddy849kshwqfygji3n56xz0flwa7xrqhx3nqrj3b"; depends=[msm nnet]; }; + elect = derive2 { name="elect"; version="1.1.3"; sha256="02j9khm2nkg422xhz226i4ba2zs08cws0srfqr1y83kvqsr857yh"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.0"; sha256="18aq1yz2l2g4cjbmk18n5vl8x8lkp90xwm82l0bg1z1smyv3agan"; depends=[data_table dplyr haven magrittr]; }; electoral = derive2 { name="electoral"; version="0.1.1"; sha256="0lmw9kwr189dzfxzlns9fmhrdy93ja8jl2s4jir07lichyiavs03"; depends=[dplyr ineq tibble]; }; @@ -6514,10 +6533,10 @@ in with self; { elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; elliplot = derive2 { name="elliplot"; version="1.2.0"; sha256="186i4gr8k9bifzssblln8z6wxfmnplls3kc4m2liiz86mzsnim9r"; depends=[]; }; ellipse = derive2 { name="ellipse"; version="0.4.1"; sha256="0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"; depends=[]; }; - ellipsis = derive2 { name="ellipsis"; version="0.0.1"; sha256="02mv63ldvlqrcggxidxy5iiikpqia1z4ckjpnd7fjy91lvwy52ka"; depends=[]; }; + ellipsis = derive2 { name="ellipsis"; version="0.0.2"; sha256="0pcn2bsqv964817pcgbixkkjkj1mbz0gighs1gd84bighhs2lpjf"; depends=[]; }; elliptic = derive2 { name="elliptic"; version="1.3-9"; sha256="0gw1klhp9l7xjmwgh43wrvwnvvyz7mbnfjn49hxy3yqsi4fjgnw1"; depends=[MASS]; }; elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.1"; sha256="1n71b5pqd1szhmp4q1h9aqgkx7s54f5i3xk5nljwzsn7cyih1kb3"; depends=[KernelKnn Rcpp RcppArmadillo]; }; - elo = derive2 { name="elo"; version="1.0.1"; sha256="0dhlac5l68a3jps2hx0bc7qjj8hsr1ha137hcwxnrfdwnki6chlp"; depends=[pROC Rcpp]; }; + elo = derive2 { name="elo"; version="1.1.0"; sha256="0xcbzhmqz5n80ybzhydz3ndzxd72gwadj8g5y4bxxfvf5il1f5yv"; depends=[pROC Rcpp]; }; emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; }; embed = derive2 { name="embed"; version="0.0.2"; sha256="0d53cv2c9rpmvvflbdf099r378yvrlvrfpczlmygc7jcd5ijja3v"; depends=[dplyr generics keras lme4 purrr recipes rlang rstanarm tensorflow tibble tidyr]; }; embryogrowth = derive2 { name="embryogrowth"; version="7.4.1"; sha256="1qha6l7q0565fn9yfvp04dmlpf21hr754gh6fpzhqnrh58h371v1"; depends=[deSolve HelpersMG numDeriv optimx]; }; @@ -6529,7 +6548,7 @@ in with self; { emil = derive2 { name="emil"; version="2.2.10"; sha256="05f0i33rd9pp7kkpry1v1ysgny3bwi712glxlcj6qm4fmi0ciik6"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; - emmeans = derive2 { name="emmeans"; version="1.3.1"; sha256="1sf7gmdb7aqhdpx489vg693ivc5677n4yjx27ixv8v7pjh8mlwwx"; depends=[estimability mvtnorm plyr xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.3.2"; sha256="0mg6y007hfmr601cq4jgxl5ncwbx79kkh7xs2i504m0rinxj8bf5"; depends=[estimability mvtnorm plyr xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; emojifont = derive2 { name="emojifont"; version="0.5.2"; sha256="0s1as6i5dz2rbd1aashn99fji2iksjzrkdkfi7wqnnxxpmkha3yx"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; @@ -6539,9 +6558,9 @@ in with self; { emplik = derive2 { name="emplik"; version="1.0-4.3"; sha256="1g4hz85bvw29c77zs0ig487z92jjl682vv457x81l077h0psvk7c"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.21"; sha256="1980bwc4fc4rwzlwya030n5rv8rq0s82hnw955mvaxrbmicnqlla"; depends=[]; }; ems = derive2 { name="ems"; version="1.2.1"; sha256="17q59r032r2dzsf2y90im4441b90zy5lnj3xrjax3ly85n1h5ngb"; depends=[]; }; - emstreeR = derive2 { name="emstreeR"; version="2.1.0"; sha256="1s1iszdf8rxvwprpi5x9n4nx7mg2cv7jm356dhxg94y33apiky8y"; depends=[BBmisc BH ggplot2 Rcpp RcppArmadillo RcppMLPACK scatterplot3d]; }; - emuR = derive2 { name="emuR"; version="1.1.1"; sha256="1kl08lwrblk0gr4nc9flrd2k81r350l1lr6wbidyfg5l60j44d1n"; depends=[base64enc compare DBI dplyr httpuv jsonlite MASS purrr RCurl readr rlang RSQLite shiny stringr tibble uuid wrassp]; }; - emulator = derive2 { name="emulator"; version="1.2-17"; sha256="150yg99qzankcqs74jvp35al9gla5vnfylwaswcw6yryi239mgi8"; depends=[mvtnorm]; }; + emstreeR = derive2 { name="emstreeR"; version="2.1.1"; sha256="1hp100nymfriqgfyjjbkcgw5ibn6wfyxscyqw1r5zhkwv6jigymr"; depends=[BBmisc BH ggplot2 Rcpp RcppArmadillo RcppMLPACK scatterplot3d]; }; + emuR = derive2 { name="emuR"; version="1.1.2"; sha256="1z4xyrqylrmni34bq234c8c9dcxqlww0ylyzgql6qan1hma8bw8d"; depends=[base64enc compare DBI dplyr git2r httpuv jsonlite MASS purrr RCurl readr rlang RSQLite servr shiny stringr tibble tidyr uuid wrassp]; }; + emulator = derive2 { name="emulator"; version="1.2-19"; sha256="03abw344qw21g8vb90z1kjqczh2cq2ppl0k438dh7xijzxdpdbn8"; depends=[mvtnorm]; }; enaR = derive2 { name="enaR"; version="3.0.0"; sha256="0sy7k8l6b8p34bcf9bpjr1y6qkjkvn77y2w2ws7ivcr1fynrhm5p"; depends=[gdata limSolve MASS network sna stringr]; }; enc = derive2 { name="enc"; version="0.2.0"; sha256="0n4s3abxmpndppm18dcibap2n22xpjzafn5xjskfdfrz3wjfy1kb"; depends=[]; }; encode = derive2 { name="encode"; version="0.3.4"; sha256="1ibrxa0lzni8c1nm3x061vj55faz8fvfgbl7c7b2wfanh5qnny9j"; depends=[]; }; @@ -6557,24 +6576,25 @@ in with self; { enpls = derive2 { name="enpls"; version="6.0"; sha256="07cwxxxsz2rj6d9dhmbfbv1vmk753ca7yy8ssq8lp4lxz3n4cp6p"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="1.0"; sha256="0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn"; depends=[httr rjson]; }; enrichvs = derive2 { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; }; - enrichwith = derive2 { name="enrichwith"; version="0.1.1"; sha256="0ccjflhyq18ynk154fpq7pan5a8hlf8vhkqqp023xbq01vfrhssa"; depends=[]; }; + enrichwith = derive2 { name="enrichwith"; version="0.2"; sha256="063q4jbs6054djk6qf3105p7na4kndvr549w5c4fiz8264r8bnvv"; depends=[]; }; ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.5"; sha256="0p744151pbj278lyc8d8p7rc20n70abpfgxz6jr10jarmq3r6x7l"; depends=[chron]; }; ensembleEN = derive2 { name="ensembleEN"; version="1.1.2"; sha256="033i4bcnr62kmrp1fafdw6vx8ir38kqchgxp4fidg3i750nkjnda"; depends=[Rcpp RcppArmadillo]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8.2"; sha256="16d8030zfdwifqrh45vz3gf5n0bix0mhsmsnydgjq1fghdklcmyx"; depends=[chron ensembleBMA evd]; }; ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; ensemblepp = derive2 { name="ensemblepp"; version="0.1-0"; sha256="1b3rhg8mv1x3caz3xg84cwx8m88055n6yl36d9i4ws6vbj8vx68f"; depends=[]; }; + ensr = derive2 { name="ensr"; version="0.1.0"; sha256="18b81iswvby7k5akbfdyc6a8j1621d4d35hxmgjip5kyvf5cb3p8"; depends=[data_table ggplot2 glmnet]; }; ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entropart = derive2 { name="entropart"; version="1.5-3"; sha256="02jzcqb7sqg9fcf2vi4myki9mgdsx0jwyf535zzh124h1bwz3f3y"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; envDocument = derive2 { name="envDocument"; version="2.4.0"; sha256="0r7h9p0b0gr2l18mv1ydlamsc0iq474dfhp450mdfnw2q289mhrn"; depends=[]; }; envalysis = derive2 { name="envalysis"; version="0.3.3"; sha256="1ys93g5gxr9x1v4hg98dcpwa40n5xkh1j8drrmpnmxwq6gv01r6r"; depends=[drc ggplot2]; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.4.2"; sha256="0dv6f7jqc5lwa0wgr9xl82vn47fgxgzfqx1pm59lzz75pls4ygfx"; depends=[fitdistrplus investr modeest sn]; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.4.4"; sha256="06pj5mla76w90mrzqlv7szcs7psaxhl6y0w0v0w6f8nlxx06nm3v"; depends=[fitdistrplus investr sn]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.5.0"; sha256="0q7kyygfwphd553lgnv8pa0zghcjj4wvq2qyh8lx2plj9fp5am3n"; depends=[animation BiocParallel broom genefilter mixtools MSnbase rcdk RColorBrewer reshape2 rmarkdown shiny xcms]; }; enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; - envirem = derive2 { name="envirem"; version="1.3"; sha256="1axgbjl4wh44vd5r9n9rbxxsi35k806r1kdvrcmmpkzwam6zd2lp"; depends=[raster RSAGA]; }; + envirem = derive2 { name="envirem"; version="1.4"; sha256="1shggpbx5f1l49g7np651w887rifs2zqksnysjlmnnjy8xgikqwj"; depends=[raster RSAGA]; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; }; - envnames = derive2 { name="envnames"; version="0.3.0"; sha256="1gssjkpx7ngxpbn05c3c74myp4131wx032cf27gxvsvnqb6nn7j5"; depends=[]; }; + envnames = derive2 { name="envnames"; version="0.4.0"; sha256="12mfbcksrp733jycasaiavlsmx138xmjpywly1wha4ds6bfw93hr"; depends=[]; }; epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.3.2"; sha256="0j64riiy7b2v1m8ki6d43jm61s7yjwlx4kxxdvlz3fx1xw7qf522"; depends=[]; }; @@ -6586,24 +6606,24 @@ in with self; { epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.2.0"; sha256="0n0100fy65kgw3c7gdmb5z5hmla5ch51b7872snf525a2r581i28"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; }; - epimdr = derive2 { name="epimdr"; version="0.6-1"; sha256="1lcl9sk3c958dm225w33kaln76y4x9mkx5y2c9kh8wd0xz891p8v"; depends=[deSolve phaseR polspline shiny]; }; + epimdr = derive2 { name="epimdr"; version="0.6-2"; sha256="1hhqcmxja4m1cywfi3nq0f21ivxhvnmb4licxsigqqmxgzwl5723"; depends=[deSolve phaseR polspline shiny]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; episensr = derive2 { name="episensr"; version="0.9.3"; sha256="0c7sk0bff0sssh0k92k213n6w4im9d8jnr0dkr8417mah5x16ahb"; depends=[actuar boot ggplot2 gridExtra magrittr plyr reshape trapezoid triangle]; }; - episheet = derive2 { name="episheet"; version="0.3.0"; sha256="0lp0hd2xyiyrb9z46fjifcirv1wxfh3dkn5chlkhkzr2s5xvbl76"; depends=[assertthat dplyr ggplot2 magrittr rlang tidyr]; }; + episheet = derive2 { name="episheet"; version="0.4.0"; sha256="0y3wy91hr3b9iky5k81mf897wg2gcdv05afhndjqwcfb0xkn2f9q"; depends=[assertthat dplyr ggplot2 magrittr rlang tidyr]; }; episode = derive2 { name="episode"; version="1.0.0"; sha256="1djk36jkvr8xvhfddqg6xsmhxc3yrgivkm8g2hr4n1qixsk1ad8m"; depends=[glmnet Matrix nnls Rcpp RcppArmadillo]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; }; epitools = derive2 { name="epitools"; version="0.5-10"; sha256="1qqa2kam3j3mkbgk62g6lwygk2fkdlrpbi27wl37j4dkdkvx013m"; depends=[]; }; - epitrix = derive2 { name="epitrix"; version="0.2.1"; sha256="13nk31h4rdpla5m0fskv8s1fwx0r2qh4d0j4cf8vnlbl12rwyh57"; depends=[digest distcrete stringi]; }; + epitrix = derive2 { name="epitrix"; version="0.2.2"; sha256="1rqpvdky002h6mz636b77l4kd0im16pww62l6vnwh83si1m9pkki"; depends=[distcrete sodium stringi]; }; eplusr = derive2 { name="eplusr"; version="0.9.4"; sha256="0af57hgl2jbfx34565wff21np35y9pqafyr0rncd94gf68wvxaal"; depends=[assertthat callr cli crayon data_table fasttime later lubridate processx progress R6 readr RSQLite stringr units uuid]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.6-1"; sha256="0q17sf2q3yj9sia9m1d23q6li6fkvgmj2a73kl1im8aiaxwcq2m1"; depends=[elasticnet irr lassoshooting Matrix survival]; }; epos = derive2 { name="epos"; version="0.1.0"; sha256="0b9r552hbrs281z7pxxw1hxgv9d15qmyzvgk5xsrgh8wivkh4lwp"; depends=[dplyr ggplot2 gridExtra hashmap stringr testthat tidyr TopKLists xtable]; }; epr = derive2 { name="epr"; version="3.0"; sha256="0czfz6qkcpa2qqs3pqii27hgpdvdzfrvxl0ip67v58hamq7kvjfv"; depends=[car lme4]; }; - epubr = derive2 { name="epubr"; version="0.5.0"; sha256="01ggkwv6l7j7zs70s53vjajfh9i0i7zvajmbqq1ij48b3mrc6y05"; depends=[dplyr magrittr purrr tidyr xml2 xslt]; }; + epubr = derive2 { name="epubr"; version="0.6.0"; sha256="0zzra5vpfsw62c19yah7fwm8xlrwnrlsb34d46wd1ssays6arf01"; depends=[dplyr magrittr tidyr xml2 xslt]; }; epxToR = derive2 { name="epxToR"; version="0.3-0"; sha256="0ckz7cvqsdilfkqap88brh4av9zv1fl3ijs4h4vlwwn7qvdcnhay"; depends=[httr XML]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; @@ -6629,10 +6649,11 @@ in with self; { erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; err = derive2 { name="err"; version="0.0.1"; sha256="0mkd5hr5pd7zqqbs205whcjm0gsg6sn5nd5abw7i46v0rq4xxvfp"; depends=[]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; - errorist = derive2 { name="errorist"; version="0.0.1"; sha256="1569yvncc9rdzchs7cvx44dhy8xf10g2hwkiy3kp68h47qghxlbd"; depends=[searcher]; }; + errorist = derive2 { name="errorist"; version="0.0.2"; sha256="061v8z11sgzbhzcnyixfv9ff0vhiszjh0dy1rvzbyjsvjzmdimq0"; depends=[searcher]; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; errorlocate = derive2 { name="errorlocate"; version="0.1.3"; sha256="0hfm0nad1bfh7a37zpn4aljrf69yc6dddz9iq46c1mzyrw116a9f"; depends=[lpSolveAPI validate]; }; errors = derive2 { name="errors"; version="0.3.1"; sha256="0nxam3bkl8r79b8v6h80mjpap8nbqp6qrpnzbcyzfwz6fwyi8ikq"; depends=[]; }; + es_dif = derive2 { name="es.dif"; version="1.0.0"; sha256="08lhl8jpxs08mdfch1m07nyq6nslhd5cnhzdyf956r7riivjfhbi"; depends=[]; }; esDesign = derive2 { name="esDesign"; version="1.0.2"; sha256="16dhddw4gp210bb1mmx5df1ziffadiz06s4i3znnzac8rv5564hp"; depends=[]; }; esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; @@ -6643,12 +6664,13 @@ in with self; { esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.1.4"; sha256="1d1rr11fldxsamn19za03sdyvvybkh3bm5zvlrlkz022jj7pgxlr"; depends=[lubridate]; }; esquisse = derive2 { name="esquisse"; version="0.1.7"; sha256="1mvwyc8l8hcqyk06sbcfr5bjnky4jdc262izsjwscsnni8rbxcan"; depends=[ggplot2 ggthemes htmltools jsonlite miniUI RColorBrewer rstudioapi scales shiny shinyWidgets stringi viridisLite]; }; - esreg = derive2 { name="esreg"; version="0.3.1"; sha256="19ikfy0g8yd224ah4gyq2k29lz3gagc6vrcv53awvdadqw0cpz8l"; depends=[quantreg Rcpp RcppArmadillo]; }; + esreg = derive2 { name="esreg"; version="0.4.0"; sha256="1qfidbmdrm4vy72yjnpaadhm993xv6qqy44a8hk0l4isvmg51a5i"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; essHist = derive2 { name="essHist"; version="1.1.1"; sha256="06wmvwjgbb1bfsjn4bv3p2m0i5nc6shn2p62kjp3iv6z42f5wndc"; depends=[Rcpp]; }; essurvey = derive2 { name="essurvey"; version="1.0.2"; sha256="0r1hkdksidx974pi08hg25qlzfxazqmzamwqg2njks2r9xk299p8"; depends=[haven httr rvest stringr xml2]; }; estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; estimatr = derive2 { name="estimatr"; version="0.14"; sha256="1ylhxs7rf608as5yd3wsvhl8q5y9g89ry0ndcqanj95vll51m11c"; depends=[Formula generics Rcpp RcppEigen rlang]; }; + estmeansd = derive2 { name="estmeansd"; version="0.1.1"; sha256="0jy4rkwirs1zs6y3czs3iajgc1g0g27g68a4vnv93di609hhbal4"; depends=[metaBLUE]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; estprod = derive2 { name="estprod"; version="1.1"; sha256="15grcpyhaazd1sl8544gx4zpjqi9p17d6siyb6a1ykzzyy1v1fln"; depends=[boot Formula gmm lazyeval minpack_lm]; }; estudy2 = derive2 { name="estudy2"; version="0.8.5"; sha256="0aqvlgzp98965xmjmmg2dxj79bjcvgv0qa89h5l1lp0i0c23p908"; depends=[matrixStats quantmod Rcpp zoo]; }; @@ -6656,20 +6678,21 @@ in with self; { etable = derive2 { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; }; etasFLP = derive2 { name="etasFLP"; version="1.4.0"; sha256="04d526yajakzivlcsz8631p0j482cbbgfpdmzkc9zr1m4495xxif"; depends=[fields mapdata maps rgl]; }; ether = derive2 { name="ether"; version="0.1.5"; sha256="03skydbw4ch0lhhlm57qgg4q0vyd4rwzsq3v2w40jrczpxpdsn9q"; depends=[dplyr httr jsonlite Rmpfr]; }; + ethnobotanyR = derive2 { name="ethnobotanyR"; version="0.1.3"; sha256="0jxi4pm0abpx8wdkvypma2bczspwyrnqn4xva48wl8ysg72bsxhj"; depends=[assertthat circlize dplyr magrittr plyr reshape]; }; etl = derive2 { name="etl"; version="0.3.7"; sha256="045hkh95ki3s10l9mz4710ws2i9and4rqb0qk1c5sfslglc0riq5"; depends=[DBI downloader dplyr lubridate readr rlang rvest stringr tibble xml2]; }; etm = derive2 { name="etm"; version="1.0.4"; sha256="0ws103b3pmli0z4xbyfxkly2wnnnxnnwc0r66qjjqjrlvm7pffl1"; depends=[data_table lattice Rcpp RcppArmadillo survival]; }; etma = derive2 { name="etma"; version="1.1-1"; sha256="0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"; depends=[]; }; etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; etseed = derive2 { name="etseed"; version="0.1.0"; sha256="1kqbhvryqzmckk91ynn68yd7msqdsl6h818r164180f10flszr37"; depends=[httr jsonlite R6]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; - eulerr = derive2 { name="eulerr"; version="5.0.0"; sha256="023m78nprdrh41bfwqs6gkd2wfwskl0147wb343kybhicqc9asjn"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; + eulerr = derive2 { name="eulerr"; version="5.1.0"; sha256="1224g5s1a610xa9smadqdl221y9xx2i17b1sfrw89nzbv4danyqz"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; europepmc = derive2 { name="europepmc"; version="0.3"; sha256="1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"; depends=[dplyr httr jsonlite plyr progress purrr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; - eurostat = derive2 { name="eurostat"; version="3.3.1"; sha256="169b76bws9dl67bbsbbpykkvp21ngyrhdwgqc7w5vif8jaf8ls5c"; depends=[broom classInt countrycode dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; }; + eurostat = derive2 { name="eurostat"; version="3.3.1.3"; sha256="0lya5n55b679dpjfwcl3xi1dzkvvjqp3bsp5ga66wx3ahdrqbyvq"; depends=[broom classInt countrycode dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; }; ev_trawl = derive2 { name="ev.trawl"; version="0.1.0"; sha256="14yhnhqq1gz2rfy13v1dybnf55pyyimajbarxyp7gaqnd66nfq3p"; depends=[eva evir fExtremes ghyp hypergeo testthat]; }; eva = derive2 { name="eva"; version="0.2.5"; sha256="03hyzbqi2mgdrmzrjnwzvy0ndf7ha5959b63sgd1g0b998fibbmd"; depends=[EnvStats Matrix]; }; evaluate = derive2 { name="evaluate"; version="0.12"; sha256="11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g"; depends=[]; }; - evaluator = derive2 { name="evaluator"; version="0.3.1"; sha256="1xyj8nc74dg2si6j4j9d35wa0qsymskpkpfd89acl0dcs07sg62j"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; }; + evaluator = derive2 { name="evaluator"; version="0.3.2"; sha256="0904bmv7yfrq8097z5i951121xn3rsymny2pfc7fhxi3rd5xnas4"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; }; evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; }; @@ -6702,7 +6725,7 @@ in with self; { excerptr = derive2 { name="excerptr"; version="1.4.1"; sha256="0z5gayf7kkhdg7ad2w4ycar5dd42jdjybrhzfmkqb3xr9pdrnijg"; depends=[git2r rprojroot rPython]; }; excursions = derive2 { name="excursions"; version="2.4.4"; sha256="140p0vks40vsj1bi89rhdqih5jh7795pxzzqm9140vfiv8b0aya5"; depends=[Matrix sp]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; - exifr = derive2 { name="exifr"; version="0.3.0"; sha256="00hixxc14wswn26s66443dkah67l498arnvwhya9cm5ybnc96h4k"; depends=[curl jsonlite plyr rappdirs tibble]; }; + exifr = derive2 { name="exifr"; version="0.3.1"; sha256="0394f04wq5dnqbnbaq7gxv4ggis4kf3b8dhhjzlybsbip6nmv54x"; depends=[curl jsonlite plyr rappdirs tibble]; }; exiftoolr = derive2 { name="exiftoolr"; version="0.1.1"; sha256="0qip3r2vvxj0ax2pf150hmka70yiv9k2vlfj5pxyminri7scvf39"; depends=[curl jsonlite]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; @@ -6714,9 +6737,8 @@ in with self; { exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; expm = derive2 { name="expm"; version="0.999-3"; sha256="04k4a6g071jkjc0d30ncmf713dj16brcs9m6pj43hnycc1caq6si"; depends=[Matrix]; }; expoRkit = derive2 { name="expoRkit"; version="0.9.2"; sha256="0qlzz86cyfz2yyynz8bj28086d1pc93gvjy1idip80m7z6vsrsxq"; depends=[Matrix SparseM]; }; - expoTree = derive2 { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; }; export = derive2 { name="export"; version="0.2.2"; sha256="03i3jk4b9q1sak6m36p349bzqcwfq3bw6y8sgrw65475mrwipm4m"; depends=[broom flextable officer openxlsx rgl rvg stargazer xml2 xtable]; }; - expp = derive2 { name="expp"; version="1.2.2"; sha256="0xr24xzplgamj8dkjk9n9jmrbyw056z57hkm9h4j43g63vxrinlj"; depends=[deldir rgeos sp spatstat spdep]; }; + expp = derive2 { name="expp"; version="1.2.4"; sha256="00r5f80wnz91n0ksp1dvrxpd6zyfis2v3rizsnm7qqnnwj3d4q1c"; depends=[deldir rgeos sp spatstat spdep]; }; exprso = derive2 { name="exprso"; version="0.4.7"; sha256="066cqzbmdbrprqxd5dx9220k20pgidc49rqvksznadsxnrbzhq61"; depends=[cluster e1071 frbs glmnet kernlab lattice MASS nnet plyr randomForest ROCR rpart sampling]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; expss = derive2 { name="expss"; version="0.8.10"; sha256="00h68pni8z1mnwzvjyr7zlxnp2b8rm6qbv5kjwa2a2q7fs3nswl7"; depends=[data_table foreign htmlTable magrittr matrixStats]; }; @@ -6736,11 +6758,11 @@ in with self; { extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extremeStat = derive2 { name="extremeStat"; version="1.4.0"; sha256="0fvkvlm47ri05w9h5qa937ijsc5lg51jc825wq9pmn7aiv58yxzm"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; - extremefit = derive2 { name="extremefit"; version="1.0.0"; sha256="064cb0xzpl3akvzg155pfppkkwalmdr06xi7h9pq9s5icrznyzdf"; depends=[]; }; + extremefit = derive2 { name="extremefit"; version="1.0.1"; sha256="1n8qv5d5v93addzxk4q8xqpf96mzv5kcbl4zj2hb7j22kb09fna4"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; }; extremis = derive2 { name="extremis"; version="0.90"; sha256="1cnwn70d9swks5b2y915l18gky9v23vaqlaaggshi0ghn3snb4sm"; depends=[emplik]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; - exuber = derive2 { name="exuber"; version="0.1.0"; sha256="0jm0kxw7f4pzy162alp0q9kxgyrg2qllhxl7ijaq5qx4wnyhab3m"; depends=[doParallel dplyr foreach ggplot2 purrr Rcpp rlang]; }; + exuber = derive2 { name="exuber"; version="0.2.0"; sha256="04vb3m8zn7c6ijs7xp45nwr14lmy6cnncshys8j889nbzdc50pxq"; depends=[doSNOW dplyr foreach ggplot2 gridExtra lubridate magrittr purrr Rcpp RcppArmadillo rlang tibble zoo]; }; eyelinker = derive2 { name="eyelinker"; version="0.1"; sha256="1lwpm247czqm26zvv5c6lkhdxpp4svszfw74g9ys9vwvwhry9c15"; depends=[intervals magrittr plyr readr stringi stringr]; }; eyetracking = derive2 { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; }; eyetrackingR = derive2 { name="eyetrackingR"; version="0.1.8"; sha256="18bz8fhy2hph7h8mm7hdhjfhi5gznj4qcl05rk3n99hkxl24qn73"; depends=[broom dplyr ggplot2 lazyeval purrr tidyr zoo]; }; @@ -6748,7 +6770,8 @@ in with self; { ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; - ezpickr = derive2 { name="ezpickr"; version="0.1.3"; sha256="1rdq51pdwv60z7bxbxcyimw993c5j8v4mdpf0swq6i0c28qqi5v0"; depends=[haven jsonlite magrittr readr readxl textreadr tibble]; }; + ezpickr = derive2 { name="ezpickr"; version="1.0.0"; sha256="1g71ky64mvq7wx0cnpxd8mlcq9669ac4kisjmm3mhm6vj6i8c5v4"; depends=[haven jsonlite magrittr readr readxl stringr textreadr tibble]; }; + ezplot = derive2 { name="ezplot"; version="0.2.2"; sha256="07ls5pfaykn7l9lygfqn9vvi821xqgwyzdc6zpyphj9nyran0480"; depends=[dplyr forcats ggplot2 magrittr rlang]; }; ezsim = derive2 { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; ezsummary = derive2 { name="ezsummary"; version="0.2.1"; sha256="16rwg1h7gs7mnkmbwfb273fy1pwdq9ng6l4ad00anpmilqcck5ng"; depends=[dplyr tidyr]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.5-1"; sha256="034m2mmm6wmsjd41sg82m9ppqjf4b1kgw5vl2w7kzqfx0lypaiwv"; depends=[]; }; @@ -6761,23 +6784,24 @@ in with self; { fCopulae = derive2 { name="fCopulae"; version="3042.82"; sha256="10wknqrrs5j63v7qnp5qmk85688r36vli4r99i49y2i2nv10yp5r"; depends=[fBasics fMultivar timeDate timeSeries]; }; fDMA = derive2 { name="fDMA"; version="2.2.4"; sha256="0lpp6gyynfziyn5ar3wlq628b5lvw5dhxzw6wr5xwwfaarqf7qfx"; depends=[doParallel foreach forecast gplots iterators itertools MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; }; fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; }; - fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; }; + fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; }; - fGarch = derive2 { name="fGarch"; version="3042.83"; sha256="14cj9i1850vnas5vqsfcc3l5dzjsli97k3dsz97j0k89jwzhq1s6"; depends=[fastICA fBasics Matrix timeDate timeSeries]; }; + fGarch = derive2 { name="fGarch"; version="3042.83.1"; sha256="0cmdjw419iad0f7iv1wjznddiag6khp4k011hz85nr5hrzzj3c1d"; depends=[fastICA fBasics Matrix timeDate timeSeries]; }; fICA = derive2 { name="fICA"; version="1.1-0"; sha256="0lfs31clax57qsrriq9wxjrjv2bckl7lf1csffzfwiqm6sp6mgxg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="3042.85"; sha256="0rm4mwhk5ial016vl6dny8s87gd5i9p04akdyg2fndpcqwfmb5lc"; depends=[timeDate timeSeries]; }; fMultivar = derive2 { name="fMultivar"; version="3042.80"; sha256="0d9ijyjqqnzvy04ncx4vqd38gvgprrnzwiy5mn61wj9a4zsfgnbc"; depends=[cubature fBasics mvtnorm sn timeDate timeSeries]; }; fNonlinear = derive2 { name="fNonlinear"; version="3042.79"; sha256="0kwjs7xx4ykw14mw3pff2axrq497jl4g23gbayswb8vrx1qhjibd"; depends=[fBasics timeDate timeSeries]; }; fOptions = derive2 { name="fOptions"; version="3042.86"; sha256="1cqyggb1hb7z0gfgkziynz7nm85z0fn3bvz1iwpy49yy8ll7rfzr"; depends=[fBasics timeDate timeSeries]; }; fPortfolio = derive2 { name="fPortfolio"; version="3042.83"; sha256="05dprxn0h2cd13m84rb1s5n8nr9m4v4dslqmm99481rp66kgc004"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp slam timeDate timeSeries]; }; + fRLR = derive2 { name="fRLR"; version="1.1"; sha256="005bmljxgvx8v87nz4l3ycg09sahyd34pg8arjz5gdc17d4mjjfc"; depends=[Rcpp]; }; fRegression = derive2 { name="fRegression"; version="3042.82"; sha256="0pi777xfk101g0r2qpcd0qxqqfnvck3sii990d946ljw6366mamc"; depends=[fBasics lmtest mgcv nnet polspline timeDate timeSeries]; }; fSRM = derive2 { name="fSRM"; version="0.6.4"; sha256="1n91gzjx9r3r3xl400w38miva0b69c0f23h2056kq9p1bax2nm86"; depends=[foreign ggplot2 gridExtra lavaan plyr reshape2 scales tcltk2]; }; fTrading = derive2 { name="fTrading"; version="3042.79"; sha256="0xnfg4npfdrvmp1n6vbsm7if16n5j83b7y1i2m5b34cqnlz9d69y"; depends=[fBasics timeDate timeSeries]; }; fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.1"; sha256="123bc56nnx6hcj257imsd8sc6d0pggw08lf4m0lr90631gcm1mkn"; depends=[]; }; - fabMix = derive2 { name="fabMix"; version="4.4"; sha256="0ma0ggdnb6jz43na5xn05nxrqns4iqi3hysw5h98d3baaxxiq7mh"; depends=[coda corrplot doParallel doRNG foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; + fabMix = derive2 { name="fabMix"; version="4.5"; sha256="0d396a3ns3h2p4rdi45xcs3rfb18aqd95n8dszgdh8snf1776b9r"; depends=[coda corrplot doParallel doRNG foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; fabricatr = derive2 { name="fabricatr"; version="0.6.0"; sha256="11vl2gabri7pb2ka7aqq3w7rxsi26qcdyqdhca9jpxm2m0swm2ms"; depends=[rlang]; }; - face = derive2 { name="face"; version="0.1-4"; sha256="0kkgblxzhjzifxnym6g5psiwvfgydk1scqbxraldklm8c4a12zc3"; depends=[Matrix matrixcalc mgcv refund]; }; + face = derive2 { name="face"; version="0.1-5"; sha256="0n7vlq29krsdcp8r32irhvf7xbcxy5g7663qncmbhj5x45sviqh6"; depends=[Matrix matrixcalc mgcv]; }; facebook_S4 = derive2 { name="facebook.S4"; version="1.1.0"; sha256="1if3fgyvj6pbf48yjwa5fkn3s4rl6kj9s1nk6dwphykhx72ghzrj"; depends=[httr magrittr plyr rjson]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; }; @@ -6787,7 +6811,7 @@ in with self; { factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; }; factorcpt = derive2 { name="factorcpt"; version="0.1.2"; sha256="17hwlsrj0fx4x05p6xvs6kl43a24icmnrzyvpf2vam5imwvmpvmm"; depends=[doParallel fields foreach iterators Rcpp RcppArmadillo]; }; factorplot = derive2 { name="factorplot"; version="1.1-2"; sha256="025lfk122w66yxym3njcpzwnbhg40xi7p1c9vnxczcb8kz31745s"; depends=[multcomp nnet]; }; - factorstochvol = derive2 { name="factorstochvol"; version="0.8.3"; sha256="0dcasii1dfkmng29a7d4k6kyy9lyrbcr06gqyg61h07xf2j3qwla"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; + factorstochvol = derive2 { name="factorstochvol"; version="0.9"; sha256="02lzigxzr66s1lk8wrb0hcijmjn85asyzm8v0x6igbj87hisqav9"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; }; fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; @@ -6837,8 +6861,8 @@ in with self; { fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; fastnet = derive2 { name="fastnet"; version="0.1.6"; sha256="16jdwvk1xhl6bn9fx5s8pzvbizx6c0jmg6arqf201a7ghw2wi4xh"; depends=[doParallel foreach igraph tidygraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; - fastqcr = derive2 { name="fastqcr"; version="0.1.1"; sha256="03051wclbfw9qz2jxr58231sgbqm15jnqz7wj8h68x970dwp7rrb"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; - fastrtext = derive2 { name="fastrtext"; version="0.2.5"; sha256="0zbd2sxzarxic90d2pkbn7fak5gyb81b180m91f784smb3sx1p1j"; depends=[assertthat Rcpp]; }; + fastqcr = derive2 { name="fastqcr"; version="0.1.2"; sha256="12x3lkg5zc4ckyg4x3xxqb779yhrr0fys7asf5b8shz49f86fmm9"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; + fastrtext = derive2 { name="fastrtext"; version="0.2.6"; sha256="1l5wxg7188dd2pgpdlxkl6i5dmd7f9skb5h2999sr7xnsw5p7bs4"; depends=[assertthat Rcpp]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.3"; sha256="00pnzr3v7vm965b3cvgplasw00akmixybvm6l9bn609c2kqbf5p3"; depends=[kinship2 multgee]; }; fauxpas = derive2 { name="fauxpas"; version="0.2.0"; sha256="0l77gxcf06p984z9vgaf1kag609h9qyrgav84lxkv97h6f3fflnc"; depends=[httpcode R6 whisker]; }; @@ -6853,11 +6877,11 @@ in with self; { fclust = derive2 { name="fclust"; version="2.0.2"; sha256="032iqrnsbs2ckhlxw9gnsqxpxj38hqnrlq46k11rvyf5zlpnci99"; depends=[MASS Rcpp RcppArmadillo]; }; fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; fcr = derive2 { name="fcr"; version="1.0"; sha256="17jrz5zp1msd2khl1lwnb5sgxcigagni556rhn7qm9g0aykbh8yj"; depends=[face fields mgcv]; }; - fcros = derive2 { name="fcros"; version="1.5.6"; sha256="0n1zbzl6g9k3smdpgyb3xsa2w8ir4bdagv7w644x1jck5rd0xn2j"; depends=[]; }; + fcros = derive2 { name="fcros"; version="1.6"; sha256="0b0lhk3v0jzg2cagl2jh3v8mvm9pagcahff9w3ii5vqi49pdvn30"; depends=[]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; fda = derive2 { name="fda"; version="2.4.8"; sha256="0n39rzbhg1hipzn51rzmbchn2358qgapg08iv7lmiqj5y7i9qns2"; depends=[Matrix]; }; - fda_usc = derive2 { name="fda.usc"; version="1.4.0"; sha256="0gp19c5lxp0g4690vdr0gpw89rl9v3l6872mf7hr8nsyyd6776vn"; depends=[fda MASS mgcv nlme rpart]; }; + fda_usc = derive2 { name="fda.usc"; version="1.5.0"; sha256="135ggfmmbn2crnzmk34hpqxdi51pflqihkz7zpnhx49860fad0fd"; depends=[fda MASS mgcv nlme rpart]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.5"; sha256="1k2b3z2jj37j6njvxalg8640zlcvi1cm7wkcwp0pia21wydz75ip"; depends=[Formula Rcpp RcppArmadillo]; }; fdaPDE = derive2 { name="fdaPDE"; version="0.1-4"; sha256="0n72x5h00n17yxjniim2qxz2phy1srk04dn6ivvc58k3x252fzkh"; depends=[RcppEigen rgl]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.1"; sha256="0jj5gprv3ihdjic261czqnv7c13mxsmjmv7gn2gv4483kgijlkz9"; depends=[fdapace Rcpp]; }; @@ -6872,7 +6896,7 @@ in with self; { fdrtool = derive2 { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; }; fds = derive2 { name="fds"; version="1.8"; sha256="1284vncixrzrz9x6b52gslrbrbia07sd0xac7nwdqhp5f5v5wfi0"; depends=[rainbow RCurl]; }; fdth = derive2 { name="fdth"; version="1.2-1"; sha256="0rr9p2rns5ws111iqcicrlpcv47fkbxf161yxkkzfs2l3f1kgw14"; depends=[]; }; - feather = derive2 { name="feather"; version="0.3.1"; sha256="1q6dbkfnkpnabq8lb6bm9ma44cfcghx2lm23pyk3vg7943wrn1pi"; depends=[hms Rcpp tibble]; }; + feather = derive2 { name="feather"; version="0.3.2"; sha256="138vnlwhkwayyim4rbx6rnf91kzhfij6v2f91ppx2174ky5611h6"; depends=[hms Rcpp tibble]; }; feature = derive2 { name="feature"; version="1.2.13"; sha256="07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra"; depends=[ks misc3d rgl]; }; featurefinder = derive2 { name="featurefinder"; version="1.1"; sha256="024g3adhxx1ynl9wnc2yl3illj4347ak6wkfmvqxfwd6llsa79ld"; depends=[plyr rpart rpart_plot]; }; features = derive2 { name="features"; version="2015.12-1"; sha256="0rd8r1dxzddb6718hcm8ck7531c9wdrjfy8n67875bbxgzcvds61"; depends=[lokern]; }; @@ -6880,7 +6904,7 @@ in with self; { febr = derive2 { name="febr"; version="1.0.1"; sha256="0wlanldcz8xdr1hng7ixhssvihdymv91icxn3qjcpm5cajnpnr7a"; depends=[dplyr glue googlesheets knitr pedometrics readr sp stringr xlsx]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; - fedregs = derive2 { name="fedregs"; version="0.1.0"; sha256="1ydkw1090n8kw26d89wrzs86xq47mahdj41pgf8x1m292xcffvjm"; depends=[dplyr httr magrittr purrr rvest stringi tidytext xml2]; }; + fedregs = derive2 { name="fedregs"; version="0.1.1"; sha256="17z8my2y5d211q548px55yhw9g42bwm6q599fndj9pia8qpps4gi"; depends=[dplyr httr magrittr purrr rvest stringi tidytext xml2]; }; fedreporter = derive2 { name="fedreporter"; version="0.2.1"; sha256="18hs358iyxmbh28jy9f65zvanpr6bk4gq75qbj255y1zzdsjr9x1"; depends=[httr jsonlite]; }; feedeR = derive2 { name="feedeR"; version="0.0.7"; sha256="08mnfi96qkr1fj53ywqmya957swcwrfd3hqk0qaf2ni96sxxnp98"; depends=[digest dplyr lubridate RCurl XML]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; @@ -6889,7 +6913,7 @@ in with self; { fetchR = derive2 { name="fetchR"; version="2.1-1"; sha256="0i5k40i7ryfbk1l4nn0k5hnmzhhp6970ns1j82hnih7kmdl4rlwj"; depends=[plotKML rgdal rgeos sp]; }; ff = derive2 { name="ff"; version="2.2-14"; sha256="1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.12.7"; sha256="04kxx2f3f0743c5nvpb7x1x0pcd220dazpd5ag1pidxbz3xa85nw"; depends=[bit fastmatch ff]; }; - ffmanova = derive2 { name="ffmanova"; version="0.9.1"; sha256="1zvqcdd08kyljxlakgfx5hm541yjqafxv3rgz6f8d8yjn8p1alvn"; depends=[]; }; + ffmanova = derive2 { name="ffmanova"; version="1.0.0"; sha256="1jbdilf2d85sziabdv1nqzgmdc46pp9x3s3wzwxyri5xxvl3vy5l"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-4"; sha256="0172kpxzjx8239r2jbcqqbpcpqygrxk36a2kmh00f73mrq0kjhc0"; depends=[]; }; @@ -6937,7 +6961,7 @@ in with self; { fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-11"; sha256="12hckg3y5j3zh9q1gwxkc27q813p2r42iqp7wdfiq6nj55jrh6w6"; depends=[MASS npsurv survival]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-14"; sha256="10q08wsv8v3w7797jdvvv60bgrf1bi6438wf0jcqv81ays82a245"; depends=[MASS npsurv survival]; }; fitplc = derive2 { name="fitplc"; version="1.2-3"; sha256="1yg3ch907c4gk7q8hxgwqxgngkmy125j3ni917nkzi7hn59krd1n"; depends=[car nlme]; }; fitteR = derive2 { name="fitteR"; version="0.1.0"; sha256="1kgnyl7am966vkfap8gmvchlpankrcj5dv5aj7ws8ix9shr76db6"; depends=[dplyr DT maxLik R_utils shiny]; }; fitur = derive2 { name="fitur"; version="0.6.1"; sha256="04lr717lsbb4731nlzgscraj30knik4q68jzrl4i5f27912159r9"; depends=[actuar DT e1071 fitdistrplus ggplot2 goftest miniUI rstudioapi shiny]; }; @@ -6961,7 +6985,7 @@ in with self; { flexrsurv = derive2 { name="flexrsurv"; version="1.4.1"; sha256="13jq7yk7rz2148wkf7dv28l79zwdf1gpfkd5khgacb8hl5kml3p0"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis survival]; }; flexsurv = derive2 { name="flexsurv"; version="1.1"; sha256="1vj8zsfgq2rv6v7na4w7n7z3farc69qsavm7pnmnhkaylz61gq26"; depends=[deSolve mstate muhaz mvtnorm quadprog Rcpp survival]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="0.0.2"; sha256="1lhw2z8i4l822ncziwpw6hg0dzc244q60n7l5aahgdhcr0xgylhz"; depends=[flexsurv gtools survival]; }; - flextable = derive2 { name="flextable"; version="0.4.6"; sha256="0fa42dvf0wyl91w4v0rywm3xgw9n03cfyl28ficrv8iabz4k4382"; depends=[gdtools htmltools knitr officer R6 rmarkdown stringr xml2]; }; + flextable = derive2 { name="flextable"; version="0.5.0"; sha256="0pmjpsypvzjc4jr44924y6rzh9x0xk525x20xlhiz1c3f0spb953"; depends=[data_table gdtools htmltools knitr magick officer rlang rmarkdown xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; }; @@ -6989,7 +7013,6 @@ in with self; { fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; fmrs = derive2 { name="fmrs"; version="1.0-9"; sha256="1x9g67701kcnz3p97iynr74sn0mfpxpp16mv1l4zxlhhfn2v5lwx"; depends=[survival]; }; fmsb = derive2 { name="fmsb"; version="0.6.3"; sha256="1n29bnyp20pvpk2lsa9fblsj5w7amp14snc74pk5w3yr5y6rj0s5"; depends=[]; }; - fmt = derive2 { name="fmt"; version="1.0"; sha256="13gsywnyvf9zy5n644g2xyd60f92w2dp7vil2dncjvjcqsib22a0"; depends=[]; }; foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.0.2"; sha256="17bng0fxjqrlni11vwmghimk0h38mlyjyxizrbs1fycb8khlqh94"; depends=[clisymbols crayon curl httr jsonlite rvest tibble xml2]; }; @@ -7006,7 +7029,7 @@ in with self; { foreSIGHT = derive2 { name="foreSIGHT"; version="0.9.6"; sha256="0vz80p227fvw18rrar5d1ikz42j47jsly0h1wmiy9gww14rcnncd"; depends=[cowplot directlabels doParallel GA ggplot2 moments zoo]; }; foreach = derive2 { name="foreach"; version="1.4.4"; sha256="0j2yj0rn0d5nbzz9nq5rqqgnxhp9pbd92q4klsarl2xpsn8119y0"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; - forecast = derive2 { name="forecast"; version="8.4"; sha256="13qq25b4r4fl18yl1wb441pqk98yqhi2gidy6si1kxgifq1xyp39"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca uroot zoo]; }; + forecast = derive2 { name="forecast"; version="8.5"; sha256="1d9hvj6gw083vbr1a93w4859b97haf1mzdkl2zbsmf4p1asmr5wc"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="4.1.16"; sha256="1srli1s96bamagqvga8qkbiyxap256bdb3hrq63nix10cv35iv61"; depends=[doParallel foreach forecast ggplot2 purrr zoo]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.2-0"; sha256="1rnf2a7sri52sm976iicab660qk07pmz8jmd3q71dg4hmc30yf9j"; depends=[Rcpp]; }; foreign = derive2 { name="foreign"; version="0.8-71"; sha256="1mv04w3ycz0ymsszn8aa87k6k5sb8mg8lhf1b8w4zpfrphpkkliv"; depends=[]; }; @@ -7016,6 +7039,7 @@ in with self; { forestControl = derive2 { name="forestControl"; version="0.2.0"; sha256="1w1x7i57dqlrm6zzgx4k0p1zs83nrg2w2jhhvjjk9s6y1ba3whyg"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestFloor = derive2 { name="forestFloor"; version="1.11.1"; sha256="1sslxq44qmmmdhr7800bz8lj9w2l7f7x1vly3w2z7j1qdijc7nw7"; depends=[kknn randomForest Rcpp rgl]; }; forestHES = derive2 { name="forestHES"; version="1.0-1"; sha256="05l04ly3l8xkdz3rnnrfa4y0wfmh1am2ixbz1vfarnqkc0zppwpj"; depends=[]; }; + forestSAS = derive2 { name="forestSAS"; version="1.0.1"; sha256="1jva2nivvcrczvqfhxa6vv1hsazp5m7djgfp7mfp1kpr136lyf2d"; depends=[spatstat]; }; forestinventory = derive2 { name="forestinventory"; version="0.3.1"; sha256="0brbg0q8j9ymvm527db7063kgs6i6flja7mxqk7yvaf3dh8wsi46"; depends=[ggplot2 plyr tidyr]; }; forestmangr = derive2 { name="forestmangr"; version="0.9.1"; sha256="1b0yijc1yzgwkypyxb6v03sw32r3zz9rfjw63xiwzspq7hkbpinx"; depends=[broom car dplyr FinCal formattable ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr minpack_lm plyr purrr rlang scales systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.5.0"; sha256="09gwgsh42gkmhs8ijq5xfbbkb1hk6sjb0q32mw2ymc6x9ycr1a9j"; depends=[broom dplyr ggplot2 lazyeval tibble]; }; @@ -7028,9 +7052,10 @@ in with self; { formulize = derive2 { name="formulize"; version="0.1.0"; sha256="1fz8q48z4zvfglxzmmjznb7lcfrrfqmnws85jfkihs3ff43h7ccc"; depends=[recipes rlang]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.4"; sha256="0qhssp8mymy5wgzfkp1xa8s81j803g0ckg647ind6ms26320hq0x"; depends=[MASS]; }; - forwards = derive2 { name="forwards"; version="0.1.0"; sha256="0pb101gdf2a4plalhhm34aixkss3lzfg8yj6yfi0d6khjmaza33i"; depends=[]; }; + forwards = derive2 { name="forwards"; version="0.1.1"; sha256="1ldyyma1ppjlnqahw6wpvwmcv7v2k9if8mfkx49j7kb866bvlhgk"; depends=[]; }; fossil = derive2 { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; }; - fourPNO = derive2 { name="fourPNO"; version="1.0.4"; sha256="08l359fj39sdbq48qk05805kv25rw1wq93db0b7rvsi3iyi2lngk"; depends=[Rcpp RcppArmadillo]; }; + foto = derive2 { name="foto"; version="1.0.0"; sha256="10mfxgg5f1r85cwr0jjnsa4csp1afcrjvyjvp31060nm638clcgh"; depends=[raster]; }; + fourPNO = derive2 { name="fourPNO"; version="1.0.5"; sha256="0nx6rl34jklsn48wphh16rxm57hfxndc1zfddgl9yw5nfmfll7gs"; depends=[Rcpp RcppArmadillo]; }; fourierin = derive2 { name="fourierin"; version="0.2.2"; sha256="0hy033bzybdc214z10wnbqph5f83fsr13admnzwb1d2drpbljnc8"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.2"; sha256="10a87bpbpvrbrpyfx7ygyr9b7wd3fp79nd4g2ggl1gz3b1daqgxq"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; @@ -7053,10 +7078,11 @@ in with self; { frailtyEM = derive2 { name="frailtyEM"; version="0.8.8"; sha256="0mfhhb025wzwvch5bcvvfsljki34xahdkqli7lvqbhhihba00r1p"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; frailtyHL = derive2 { name="frailtyHL"; version="2.2"; sha256="0i6r889i4f07w6992nfsfr439psz6k3q79nkkk3zwf5fv5r6bcky"; depends=[cmprsk Matrix survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.5"; sha256="0hkl62srfm26z48nsg0s6yssrwdmpv17qzyd9fjkxir6ghhvxvzy"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="3.0.2"; sha256="08x44gs9g0k4mh6h480iq5idlcwljdcmlznlvc9f9bv1xllmb92i"; depends=[boot doBy MASS nlme statmod survC1 survival]; }; + frailtypack = derive2 { name="frailtypack"; version="3.0.2.1"; sha256="15y78bbiw05f661nq4rpzybf718x9pg8iwwxwikidfww5rya1s8x"; depends=[boot doBy MASS nlme statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; }; franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; }; + frapplot = derive2 { name="frapplot"; version="0.1.3"; sha256="12924szk2p0582nv97gi8pxrbv41zqpjryc6jqgg4llhp7ydz7xf"; depends=[]; }; frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; fredr = derive2 { name="fredr"; version="1.0.0"; sha256="1hv51m0ihdpb73rp2gwj2q2xpjzlqpf9p3xzqdmy9nhwpfbj14nh"; depends=[httr jsonlite rlang tibble]; }; freegroup = derive2 { name="freegroup"; version="1.1-0"; sha256="0ssshs2d6l2ip1xx9x581w0cdnd2459a1mh360ybwajkjgak2ci6"; depends=[magic magrittr plyr]; }; @@ -7068,16 +7094,14 @@ in with self; { freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; }; freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; - frequencies = derive2 { name="frequencies"; version="0.1.1"; sha256="0d52kf4r13n59990xhra9i6gfvs4sn7ix54d0c0g56p1rj7hnh79"; depends=[dplyr]; }; frequency = derive2 { name="frequency"; version="0.3.1"; sha256="0m3vgcwldl7zv0nwdwfz80qanibmfp8j5iv79kydhrmzzr04rbf5"; depends=[DT ggplot2 gtools knitr rmarkdown]; }; frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.1"; sha256="006cb7x65if7md5w6w90nacdmg39pv7dc8zxvchc52kmfzlps0ds"; depends=[knitr pbapply urca vars]; }; - freqweights = derive2 { name="freqweights"; version="1.0.4"; sha256="1iy2vzv4wc2883yq8r31wpspa7gm7cd4wkgvbh7mwafll463zni2"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; frite = derive2 { name="frite"; version="0.1.0"; sha256="0qi03m8n05hx0ghh12zqrjvsqhyir4q9qmxb657d4vzajmih0bhn"; depends=[assertthat magrittr purrr stringr tictoc]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; frmqa = derive2 { name="frmqa"; version="0.1-5"; sha256="0vd5jnjzhkc0vd4cqn4cs6a3limd4fxwyb5i7845rwmkzk1944aj"; depends=[partitions Rmpfr]; }; - fromo = derive2 { name="fromo"; version="0.1.3"; sha256="132i9z8zwjm8a7fw5mdqq0a3q8hd985mrifg67lddqkxwgc8lxcc"; depends=[Rcpp]; }; + fromo = derive2 { name="fromo"; version="0.2.1"; sha256="0srq13j0xqbyrmm8n93b5qwc25nz921z45yf467d7gfhxsbgy3hm"; depends=[Rcpp]; }; frontier = derive2 { name="frontier"; version="1.1-2"; sha256="1vpjd57cc6niwqibhz1ib46zj57d5a9m40yaq7kr9awk9di65ryz"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; @@ -7092,12 +7116,12 @@ in with self; { ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; - ftsa = derive2 { name="ftsa"; version="5.2"; sha256="16lzlzjm4ifpqww5yix8l9q5xs1cl5aqi7vjn74nnls6wkgvp4rw"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; }; + ftsa = derive2 { name="ftsa"; version="5.4"; sha256="0vwmhrcpk684zjsvg00rx735d4lk4a0p1q790s7jn7b58mzb932b"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; fueleconomy = derive2 { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; }; fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; fullfact = derive2 { name="fullfact"; version="1.2"; sha256="13729m2s8b32d9i9c6g2r0zkcqsw9p7nhdig8isarfn4bjzqhf71"; depends=[afex lme4]; }; - fulltext = derive2 { name="fulltext"; version="1.1.0"; sha256="195281yyjim7giim326lmk69xayw6n4xdkkym3azi6nj6a3g6f0v"; depends=[aRxiv crminer crul data_table digest hoardr httr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; + fulltext = derive2 { name="fulltext"; version="1.2.0"; sha256="0xajp1940xfxxfkl2fiwg8c0j285hvrqy0iwaxg9iqn5sjvjfgw4"; depends=[aRxiv crminer crul data_table digest hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; fun = derive2 { name="fun"; version="0.2"; sha256="0944m10nym4rsb6rhdwqn04c7l3bz43jcw3q8hv4vljdf5kyg9ar"; depends=[]; }; funData = derive2 { name="funData"; version="1.3-2"; sha256="0qifkrw4a6hrm8msxcy1dxrfiw88xmxw8avg5ls7bginq4bfsk51"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; @@ -7108,7 +7132,7 @@ in with self; { funchir = derive2 { name="funchir"; version="0.1.4"; sha256="1mbsy65628q117c2k01wvibpjd3ibigy4yc1c8m0rf9jwsc67qjb"; depends=[data_table]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; - fungible = derive2 { name="fungible"; version="1.75"; sha256="158s5m2xbc520kmb0zgckydfffff0zlb0b6ama0g9r07fv06rmyx"; depends=[clue e1071 GPArotation lattice MASS mvtnorm nleqslv psych Rcsdp RSpectra stringr]; }; + fungible = derive2 { name="fungible"; version="1.76"; sha256="0irpap4vv6akcj9dc2xngmbw1j7x4cnp47apay2bjvjcfmfjryaj"; depends=[clue e1071 GPArotation lattice MASS mvtnorm nleqslv psych Rcsdp RSpectra stringr]; }; funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; @@ -7124,12 +7148,12 @@ in with self; { futile_matrix = derive2 { name="futile.matrix"; version="1.2.7"; sha256="0nbzcy5l3nllppwmdib1s11s7b4m7mfvqb90n6b2hgmd48jsw8wg"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; - futility = derive2 { name="futility"; version="0.2"; sha256="0njckhwmawqhiznv241yjghh99wl72c4xknp9nzbmvi5j575rnlh"; depends=[]; }; - future = derive2 { name="future"; version="1.10.0"; sha256="07dmb5gn29pjaya3ljmpbag1wk27i3dr63mcxgjgzkfj9dgshp32"; depends=[digest globals listenv]; }; - future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.16.0"; sha256="1j4gjgqy2hikpl9x1jf0qvncyi5dsfz3hi4v4x0kw7hzlsgc6f00"; depends=[BatchJobs future R_utils]; }; - future_apply = derive2 { name="future.apply"; version="1.0.1"; sha256="1i5apv9ywwb5xhq4g0lk5q1sy23zhdvdsrx8fax3nyprinvw5a7l"; depends=[future globals]; }; - future_batchtools = derive2 { name="future.batchtools"; version="0.7.1"; sha256="0mgppqzw6qgm8dhp9kxh1nb3xpp8mw2aj1m1yaj3wivkb22fdicn"; depends=[batchtools future]; }; - future_callr = derive2 { name="future.callr"; version="0.3.1"; sha256="0h1nm65f36bpb6anjiyrb3vni5rzx4x047l0a396d2321cxszv7l"; depends=[callr future]; }; + futility = derive2 { name="futility"; version="0.3"; sha256="1iwjkm46409slb78sbyxl35wvy56ywqdfl2a4kx4wmxpxdhjlw14"; depends=[]; }; + future = derive2 { name="future"; version="1.11.1.1"; sha256="1s4lyqg4mm1drzc6czaalmhmxfjgp4nznb14ql5xzny9rprgz43i"; depends=[digest globals listenv]; }; + future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.16.1"; sha256="0isisl38gy59ws6w2qvz5ljp7j88lr6kqnq9g6pdw7njph1p6ayn"; depends=[BatchJobs future R_utils]; }; + future_apply = derive2 { name="future.apply"; version="1.1.0"; sha256="0b6v9rxvnnz13sydbgkapw71hx98fwdczjchgqnspjmq2340kdc0"; depends=[future globals]; }; + future_batchtools = derive2 { name="future.batchtools"; version="0.7.2"; sha256="09a4s3mvkxk3x4qxggvkvp4bskpibglg3xb4807pgw7dfic7vxw7"; depends=[batchtools future]; }; + future_callr = derive2 { name="future.callr"; version="0.4.0"; sha256="00anpp721chznl2hqa6dwv4mn7qjqcf3s6dxxiq3aqzwx30jblr6"; depends=[callr future]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; @@ -7145,7 +7169,7 @@ in with self; { fxregime = derive2 { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[car sandwich strucchange zoo]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; }; - g3viz = derive2 { name="g3viz"; version="0.1.3"; sha256="0c1filziyp6bqi7i92xcrip10hs0rwxxcnawhqll80jk66lc1kl2"; depends=[cgdsr htmlwidgets jsonlite stringr]; }; + g3viz = derive2 { name="g3viz"; version="0.1.4"; sha256="13l2lmrvzxvp2mkwlg12bapzavv4rpwjk5l771fc7himf0il411w"; depends=[cgdsr htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; }; gDefrag = derive2 { name="gDefrag"; version="0.1"; sha256="1xzp12p7w4gsy88hjl1n0ylymjbm3wqypqavkb97if94mwhlfqsh"; depends=[igraph maptools rgdal rgeos sp]; }; gIPFrm = derive2 { name="gIPFrm"; version="3.1"; sha256="08rfdac442picbw1r3xyxjzf2dc57svg44am0714z4r72mshvj04"; depends=[]; }; @@ -7165,7 +7189,7 @@ in with self; { gStream = derive2 { name="gStream"; version="0.1.0"; sha256="02ww3s3pc7x8kvi697rfilpl5swi33v4k0q5wkv4rf6mc319m5qk"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; gWQS = derive2 { name="gWQS"; version="1.1.0"; sha256="03v6b90745nd0jxil39rgay1yh1lrg9p1wbi22yffd29a2arsf22"; depends=[ggplot2 Rsolnp tableHTML ztable]; }; - gWidgets = derive2 { name="gWidgets"; version="0.0-54"; sha256="13lbbbnmkvb559klgsnz0q27qlyv102xakb6yccxsxjw249hm8c2"; depends=[]; }; + gWidgets = derive2 { name="gWidgets"; version="0.0-54.1"; sha256="1vwwjpi4lbgzw3fw3j9cccs9qhqa11v5hvq4hv5px373dla8pcn2"; depends=[]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-7"; sha256="02jrv5x7s3jm2ajpdvgsp4zkn65gjy96rvgdxhf9smp1kb6llzg0"; depends=[digest]; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-6"; sha256="0arh0yxx63m4df1ccrv0q3vkjncwv3ink8vkalp6ashi2932yfma"; depends=[digest gWidgets2 memoise]; }; @@ -7203,10 +7227,10 @@ in with self; { gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-5"; sha256="11wblnh22xq3m3z25i30v2kd0zlf8wa3cm5z38z56rhk3l2wf5bc"; depends=[lme4 Matrix mgcv]; }; gamm4_test = derive2 { name="gamm4.test"; version="0.1.0"; sha256="0ab6rksr88fsv6whp6cxyshpv5ixmf9lw51cl3rzk870r8q326wg"; depends=[doParallel foreach gamm4 Matrix mgcv plotly RColorBrewer]; }; - gammSlice = derive2 { name="gammSlice"; version="2.0-1"; sha256="0286gffy7hym3fwy26k8sfl7nj945lavpjvn435khp2rsmc1km2i"; depends=[KernSmooth lattice mgcv]; }; + gammSlice = derive2 { name="gammSlice"; version="2.0-2"; sha256="1klxg1yhmfaz1zjnw1kxl1lm5plkakqh014rpkak2lj8zgf8qnyy"; depends=[KernSmooth lattice mgcv]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-1"; sha256="107hbshi36dcyykhy6w1i1ih84xwdqv1q3nad73d3krf7bhvhg5f"; depends=[foreach mda]; }; - ganalytics = derive2 { name="ganalytics"; version="0.10.4"; sha256="0l2l67135bvbivy1hzlrzx98kn4w6bz2mhdnfkilrs2mwlksyhvv"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr XML xml2]; }; + ganalytics = derive2 { name="ganalytics"; version="0.10.6"; sha256="1cfjprfgzkg6jppk7sx6hcfjql8kyc13dflivcbb55wcliap4wy8"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr XML xml2]; }; gap = derive2 { name="gap"; version="1.1-22"; sha256="1xryy228bysj7qmb73znh6vp31bchshwpsjr277vyaffr6m939ki"; depends=[]; }; gap_datasets = derive2 { name="gap.datasets"; version="0.0.2"; sha256="0skxgiwymd8c4vsy2dbddifjj9a0bq52gdd2r62slsv0q9haw96y"; depends=[]; }; gapfill = derive2 { name="gapfill"; version="0.9.6"; sha256="0384v7capab7dbyvz6b2jvnh840z6ab3857my0h3cgsys3lhn3c5"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; @@ -7225,7 +7249,7 @@ in with self; { gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; gbfs = derive2 { name="gbfs"; version="1.1.0"; sha256="1c68p384fh53vi73xjk6kg51q62w49r74d1miyhxg5w56bwyw9n4"; depends=[dplyr jsonlite lubridate readr stringr]; }; - gbm = derive2 { name="gbm"; version="2.1.4"; sha256="0lp11s911y2xf9wn9288jl80qqc9wh2jrk49lxsjm94lbws51zli"; depends=[gridExtra lattice survival]; }; + gbm = derive2 { name="gbm"; version="2.1.5"; sha256="0vs6ljaqhwwpgr8wlbhmm4v147rd82kl16rpaijqiylxcc8dxyq6"; depends=[gridExtra lattice survival]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; @@ -7237,7 +7261,7 @@ in with self; { gcdnet = derive2 { name="gcdnet"; version="1.0.5"; sha256="159dl8v1n7s9wnfrjb6f0b3ssblkqgbfzs15vjxhc8xkz0jp9z1c"; depends=[Matrix]; }; gcerisk = derive2 { name="gcerisk"; version="18.02.22"; sha256="1wy9l4s17ji5xj1cxjnb59qz3242yjs4zp76fy3rg1m0k7ib52vg"; depends=[cmprsk ggplot2 survival]; }; gcite = derive2 { name="gcite"; version="0.9.3"; sha256="19yz3hkbazcjwh2vpl05l5i5li6wa1x6b7wkajlxvwbj2kb5bwdy"; depends=[data_table httr pbapply rvest tm wordcloud xml2]; }; - gclus = derive2 { name="gclus"; version="1.3.1"; sha256="02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"; depends=[cluster]; }; + gclus = derive2 { name="gclus"; version="1.3.2"; sha256="1cz0g0i972955hhaji30rx8448x7f3as7z1sww9i5h86ybgirilw"; depends=[cluster]; }; gcmr = derive2 { name="gcmr"; version="1.0.1"; sha256="093j1cmfw83rck00lx2ns7sfaya7kfc8k7af0q80az7w2g9hmmpv"; depends=[betareg car Formula geoR lmtest nlme sandwich sp]; }; gconcord = derive2 { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; @@ -7260,7 +7284,7 @@ in with self; { geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; geex = derive2 { name="geex"; version="1.0.11"; sha256="19qqgr16cd4zsmfgl9ny92ncvf1418ilvhb9h3axw24mkycins61"; depends=[lme4 Matrix numDeriv rootSolve]; }; geigen = derive2 { name="geigen"; version="2.2"; sha256="0wfd87xd438ri0a9m9dz46jfy4wpm75skc3iyppx80d03kijvcig"; depends=[]; }; - geiger = derive2 { name="geiger"; version="2.0.6"; sha256="1zry3iclj7yciiiysbq6z0kn759c7hdy5fq0dcszkskqcd92qfz1"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; + geiger = derive2 { name="geiger"; version="2.0.6.1"; sha256="02xsgp3lbhn6gz0m3hcrv9afk6g6jzfl8hq17cs9dh4h785f559a"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; }; gemlog = derive2 { name="gemlog"; version="0.30"; sha256="1cznlgl0gwqih63w6vfxj1ln7qfsa60c5l3wx9pri0ngcx75p9rn"; depends=[signal]; }; @@ -7278,7 +7302,7 @@ in with self; { gender = derive2 { name="gender"; version="0.5.2"; sha256="1kd5024z9mbyiwmj7rpn7zflmpw6jsj2sz153g3ckzyhxjbc3x36"; depends=[dplyr httr jsonlite]; }; genderBR = derive2 { name="genderBR"; version="1.1.0"; sha256="0j5wsbv797wc48lc65yhaqhpwqyr662460vj59x7r9p7d7m1ncd0"; depends=[dplyr httr jsonlite]; }; genderizeR = derive2 { name="genderizeR"; version="2.0.0"; sha256="0r9r5x93zr58sfrww3l2vyvjyj8lir2yds08y6dzf88rs9v15w3c"; depends=[data_table httr magrittr stringr tm]; }; - gendist = derive2 { name="gendist"; version="1.0"; sha256="0n3ax7iy40ymrxhmb88w31a4aacaps9f1iild42afin7i7vy4dq9"; depends=[]; }; + gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; @@ -7290,12 +7314,12 @@ in with self; { generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; generics = derive2 { name="generics"; version="0.0.2"; sha256="0xk1xhpy7gpv3pvaygzhpfdxj72zmb38pb4nscfyg2ff36vx3cvi"; depends=[]; }; genesysr = derive2 { name="genesysr"; version="0.9.1"; sha256="0cwx00bikhr32h2mxnd9v5z80zjy3y9i7b30achhlrjzvylh6q4j"; depends=[httr jsonlite]; }; - genetics = derive2 { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; }; + genetics = derive2 { name="genetics"; version="1.3.8.1.1"; sha256="0p59r4vxhy68d7cv2s2k4vbgnkxji21naz9jmdry9wxclrg7fw28"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.4"; sha256="0ymrn42ik0rfildmyq4z0gsd7injda0dsjgx69nqb6hq0x8s5hqa"; depends=[Rcpp]; }; - geniusr = derive2 { name="geniusr"; version="1.0.0"; sha256="0akz6hkw9mjwgx9s9j24j5l1z4q41kbhna2245l26ymn4cf0rwjc"; depends=[httr purrr rvest stringr tibble xml2]; }; + geniusr = derive2 { name="geniusr"; version="1.1.0"; sha256="1qnzqlgzq507g9iik00gh242nh3zcg38awrlaxl5zgnsp852kjnv"; depends=[attempt curl httr purrr rvest stringr tibble xml2]; }; genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; geno2proteo = derive2 { name="geno2proteo"; version="0.0.3"; sha256="1q054ai42f5gmrj791abj02f663zs7ymdh3pfs3b2lq6i4w9s2fb"; depends=[BiocGenerics GenomicRanges IRanges R_utils RUnit S4Vectors]; }; - genoPlotR = derive2 { name="genoPlotR"; version="0.8.7"; sha256="1zplk0acismv4x528rmmg5jcv6ng6c4vjf5h0mr124fj3kizsrg0"; depends=[ade4]; }; + genoPlotR = derive2 { name="genoPlotR"; version="0.8.9"; sha256="07901qv2lzzflda0p8qxmla6syvq2c9y230xipvn1i0p4izdqk5s"; depends=[ade4]; }; genogeographer = derive2 { name="genogeographer"; version="0.1.8"; sha256="1sawxazfyi29h27lyrkkg0cqirmca59387z77r2jamcj6yx4lpxg"; depends=[dplyr DT forcats ggplot2 knitr leaflet magrittr purrr readr rio rmarkdown shiny shinycssloaders shinyjs tibble tidyr]; }; genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; }; genomic_autocorr = derive2 { name="genomic.autocorr"; version="1.0-1"; sha256="1lidrjz1flxw4jvhqdi8y813m7ss4kkvm7bxsdpz60dxxw3204gm"; depends=[data_table magrittr reshape]; }; @@ -7303,7 +7327,7 @@ in with self; { genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; }; genpathmox = derive2 { name="genpathmox"; version="0.3"; sha256="0r1iqwm5jh93lbh87ks5qm4qqsp98928vg7qmv1pkahdlvl3ramw"; depends=[diagram mice plspm quantreg]; }; genridge = derive2 { name="genridge"; version="0.6-6"; sha256="1hqarvd767h2vbjqfjzdr0548hxj87kv1073hfqyq5fybdlzsjx3"; depends=[car]; }; - gensemble = derive2 { name="gensemble"; version="1.0"; sha256="0yyi7djzqx4yhxp6yy1rjgvzidjlna79ds89bgj6m6zj3aav6yw2"; depends=[]; }; + gensemble = derive2 { name="gensemble"; version="1.0.1"; sha256="03ql1qxrxixr70hs9mwiqw92qyrg9pj4046pb42g435yncw321ad"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.1"; sha256="1xzli40fw94n89cv2qyb321csad1w9zidqc226wlifl2m44cw6f7"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; gensvm = derive2 { name="gensvm"; version="0.1.1"; sha256="10ym8p1i66ppjhn039wqbpm2yvmirj3pfqmqqn7iji8s1hdxds73"; depends=[]; }; geoBayes = derive2 { name="geoBayes"; version="0.5.1"; sha256="18m1qxzq97rddbxk99za5yfdcq6nyy4nxgikylfpsb2mxanjxyx2"; depends=[coda sp]; }; @@ -7319,13 +7343,12 @@ in with self; { geofacet = derive2 { name="geofacet"; version="0.1.9"; sha256="0z9xd24hn9j8azd4kal81lz72zy6vv9rvwx1jsmkq7z7f1wwly48"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sp]; }; geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; }; geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; - geohashTools = derive2 { name="geohashTools"; version="0.2.0"; sha256="1jc6kghs2lpjvn1zrw635fyf5vhs9r570hyrdyqcxpv77lixs4gg"; depends=[Rcpp]; }; - geojson = derive2 { name="geojson"; version="0.2.0"; sha256="1xvbkdaaf55x015pflvcdy06ayrmhqi3my0sdqb48z129rdbr3i7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; + geojson = derive2 { name="geojson"; version="0.3.2"; sha256="0iqf8jkqgl97a07v8ixr2pbvamwyjswqckdwl3kkxgx7bycndprv"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.0.6"; sha256="17zcrkazcnn1507m5cpphzp14m40w1wzrhrb77rl5hn1jrxqvhh5"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.6.0"; sha256="10vi40ppy65yg655xy0j8zl6icn7d7icwfj4a84wpp28pd1bwic8"; depends=[geojson httr jqr jsonlite magrittr maptools readr rgdal rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; - geojsonsf = derive2 { name="geojsonsf"; version="1.2.1"; sha256="1npa2d33g33ys9w6jankjqmm38mvhfs32flrbpph0nk3fdrmlapm"; depends=[curl jsonify rapidjsonr Rcpp]; }; - geoknife = derive2 { name="geoknife"; version="1.6.1"; sha256="128y2m9aggcrfz2ynw2rzbq76rp61db1glzwhhc3n4rh25j974ic"; depends=[curl httr progress sp whisker xml2]; }; + geojsonsf = derive2 { name="geojsonsf"; version="1.3.0"; sha256="1wr3g4rcvv7wh0gjw5mic3msz7wgcg6ra3zai5kxbv3wq2i9hfcg"; depends=[BH curl jsonify rapidjsonr Rcpp]; }; + geoknife = derive2 { name="geoknife"; version="1.6.3"; sha256="092in9wihgijhbkawzjqwfyazz22n4sc06x2gj14yvmp63x5dj36"; depends=[curl httr progress sp whisker xml2]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geomedb = derive2 { name="geomedb"; version="0.2"; sha256="1nsf7xzqayk8zbw3b6xpgiqk2w2kzc896gjswzxq128xw05cia0a"; depends=[ape httr]; }; geomerge = derive2 { name="geomerge"; version="0.3.1"; sha256="0pvyhpv4vq8mvvlybxhviq8rbazw29dgf9m0xnldaxg9r6lqdp4d"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; @@ -7339,6 +7362,7 @@ in with self; { geoparser = derive2 { name="geoparser"; version="0.1.1"; sha256="0rk2wcig79r28a974bc181p8vypxzbgxcb9rsp24qj9mg02rn5n5"; depends=[digest dplyr httr jsonlite lazyeval purrr stringr tidyr]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; georob = derive2 { name="georob"; version="0.3-7"; sha256="1bs54qmj9qwh0pxllmsvc6camw8mk44538yhm164xbm9l344s1vz"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; + geosample = derive2 { name="geosample"; version="0.2.1"; sha256="1gpzrsza8ys2jdazb2ixc70y1w5lrkahlmvws1i071zby1la01iy"; depends=[pdist sf sp splancs]; }; geosapi = derive2 { name="geosapi"; version="0.3-0"; sha256="0yl2iaynhx0zgfcfkqp9hbyjh27fzhyra7q30ks9v48s0rhjv1mx"; depends=[httr openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geospacom = derive2 { name="geospacom"; version="0.5-8"; sha256="14qyjbq0n43c2zr9gp11gdqgarvmicx3gpq2ql2vjfzrmirxwjgg"; depends=[classInt geosphere maptools rgeos sp]; }; @@ -7353,7 +7377,8 @@ in with self; { geozoning = derive2 { name="geozoning"; version="1.0.0"; sha256="0cqdi2jgqrxc339qkr57dp11jp40x99f9inwamnh7ymg2q7kq14s"; depends=[deldir fields ggplot2 gstat maptools RandomFields raster rgeos sp]; }; geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; - germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.2"; sha256="06s6zfx46c5rylhqpb09agyb681rls8x3a1dqnxql16xgaq5gn74"; depends=[broom ggplot2 ggrepel minpack_lm plyr Rdpack]; }; + germanpolls = derive2 { name="germanpolls"; version="0.2"; sha256="13ss7286sraiq6rgbbmlv3j94av26pv9016hz8hrlzvghmnkfwvh"; depends=[dplyr magrittr purrr RCurl xml2]; }; + germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.3"; sha256="1hfhwprs4b582n81ardh7mah52989shq2cphci9vskwb4jbkyzwx"; depends=[broom data_table ggplot2 ggrepel minpack_lm plyr Rdpack]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; gesis = derive2 { name="gesis"; version="0.2.1"; sha256="1cdmhfdjiwsp48a7b0r1mnagnymz606mkzpam9fsvfl72vzji2w7"; depends=[httr rvest xml2]; }; gestalt = derive2 { name="gestalt"; version="0.1.5"; sha256="1j5cg6473x9v7i67wcl0r09vi25dnrd94flccimwh8ns8cd6869c"; depends=[rlang]; }; @@ -7361,11 +7386,12 @@ in with self; { getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; }; getPass = derive2 { name="getPass"; version="0.2-2"; sha256="03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"; depends=[rstudioapi]; }; getProxy = derive2 { name="getProxy"; version="1.12"; sha256="0qcxihgwy3h2b98z2hwjszwqbz117d89xjys7fy0f8m9hv7rf6ph"; depends=[bitops data_table dplyr httr jsonlite RCurl]; }; - getTBinR = derive2 { name="getTBinR"; version="0.5.6"; sha256="1dj4ay4mrgqy2dasvcfawmdp4byfyhhz8a788bb6636gdyf6a8ac"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; }; + getTBinR = derive2 { name="getTBinR"; version="0.5.7"; sha256="08hs3k2qr0wf7bsv74765ddlfg7m5dap7yzpm5vh1jar6xdn2vzj"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; }; + gethr = derive2 { name="gethr"; version="0.1.0"; sha256="0kpi9b9yg2nh332zkml24pmj6vgjfh8mrfjjg5a636s2rg98g5g7"; depends=[httr jsonlite]; }; getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.1.1"; sha256="14w0n658s624anvxv7sqcgy6vfaaxcc7fj4xi1k2qrxd9rdh6dza"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.2"; sha256="13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x"; depends=[]; }; - gets = derive2 { name="gets"; version="0.16"; sha256="0ipnf8jlirwvr9zjyw7dxmm8vqjznlw2k7iy56pm2hyc70ssyxw8"; depends=[zoo]; }; + gets = derive2 { name="gets"; version="0.17"; sha256="04iiwci38pnn1vbx85kn5fcdmhrssalhzqrlg8zqvz4bbcx24wch"; depends=[zoo]; }; gettz = derive2 { name="gettz"; version="0.0.3"; sha256="1i06nfm824131q8lwwhrbzg2g9lbnmyp8k57w2vag7v8jj5rdrda"; depends=[]; }; gfcanalysis = derive2 { name="gfcanalysis"; version="1.4"; sha256="1hjgbiakf01mmaa2jhlnymcsjsj1zssay44p4sdxxxzpx4szs3vv"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; gfer = derive2 { name="gfer"; version="0.1.10"; sha256="1y0ra8k7zka43ibiii16vbwnc3m1i77yc9zj8rhzhmvhajjwad3l"; depends=[circlize data_table ggplot2 ggrepel googlesheets gsheet httr jsonlite rvest scatterpie stringi tidyr V8 xml2]; }; @@ -7387,26 +7413,27 @@ in with self; { ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.2"; sha256="12sxvd9kjgszpbk35m7fj1wv7x40bp79c0g0by1xax70r3495h93"; depends=[ggplot2 reshape2]; }; ggdag = derive2 { name="ggdag"; version="0.1.0"; sha256="0ja3v8pmlzl55n8y8n9zcg5n17w8w4vdq42bqf6h8hgyqj63rcg9"; depends=[dagitty dplyr forcats ggforce ggplot2 ggraph ggrepel igraph magrittr plyr purrr stringr tibble tidygraph]; }; + ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; ggdistribute = derive2 { name="ggdistribute"; version="1.0.3"; sha256="07bsnfp1chf52gprw7g5kyqf6l6yzmnlv13x9dj1wa6rjwq1342i"; depends=[data_table dplyr ggplot2 magrittr tibble]; }; ggdmc = derive2 { name="ggdmc"; version="0.2.5.2"; sha256="0gswv1f1g24z34wza6fsnj1408yjvc2na1y3wnk2xi8ccqf6rj8g"; depends=[BH coda data_table ggmcmc ggplot2 matrixStats Rcpp RcppArmadillo rtdists tmvtnorm]; }; gge = derive2 { name="gge"; version="1.4"; sha256="0plwk5j2n0309ghgn8r4ws3azwn7n4jb7yfykiiwwalhs3k05lsa"; depends=[nipals reshape2 rgl]; }; ggedit = derive2 { name="ggedit"; version="0.3.0"; sha256="1v9apfkm47jcqyhjrvv8ig09gz6zsss5xj5mrckfjybd5ca08rzn"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="0.7.0"; sha256="070c3fxmzajq2fy816s5pfqdyjlnzkabj97z7fcsva4h5rnqi9d6"; depends=[crayon dplyr ggplot2 lme4 magrittr MASS prediction purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; + ggeffects = derive2 { name="ggeffects"; version="0.8.0"; sha256="152xyadj5m171z7dlzzy40y1fp2l9v46525dlw2al3qr0b7zpm61"; depends=[crayon dplyr ggplot2 lme4 magrittr MASS prediction purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; ggetho = derive2 { name="ggetho"; version="0.3.4"; sha256="05wh0qk5cbcvcfgj5wf12qqbjgl1bbwcxywc16qdby7r4h5wy0gn"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; ggfan = derive2 { name="ggfan"; version="0.1.2"; sha256="0agk9r2g8gh5ixg25rix362c7hj8b255w3ff7iawinsndf0dmwpy"; depends=[colorspace dplyr ggplot2 rstan]; }; ggfittext = derive2 { name="ggfittext"; version="0.6.0"; sha256="06zhzw7yw7i08pqb9an8gsbf7qmvf9la8s8k1zgril8jsqwf6sfl"; depends=[ggplot2 stringi]; }; - ggfocus = derive2 { name="ggfocus"; version="0.8"; sha256="1gzx9hiaxni7d90wb9apqzw4rxc32gk5nrjxkgvwv52m999jh2wc"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; + ggfocus = derive2 { name="ggfocus"; version="0.9"; sha256="03adq3pdhlgckqc20aw6r70kdcrw0v4rmm848ivv6wkck4qyla3m"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.1.3"; sha256="0wydxmy6sfl84q94dd27m7cpg9iy6vgwzy3nr3m3cf3rfjk87sn4"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; - ggformula = derive2 { name="ggformula"; version="0.9.0"; sha256="1pmpdfjfbrc6kcpq70cr1kbj2qy711hw940g2aiis6l443z706kh"; depends=[ggplot2 ggstance magrittr mosaicCore rlang stringr tibble tidyr]; }; + ggformula = derive2 { name="ggformula"; version="0.9.1"; sha256="01ngx8qh9lhmagng6abx2ky54zi3iyj5bpxlnw59slagwv7l6icx"; depends=[ggplot2 ggstance magrittr mosaicCore rlang stringr tibble tidyr]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.5"; sha256="1mqgikpg34czz0zj4q3yh4xq9iw2x9zkz00ss27r6pmi6zipb6rm"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; gggenes = derive2 { name="gggenes"; version="0.3.2"; sha256="19hpb8mi690482w6syqhyzrykipym0l92prcqvqc0x7szsvp26g9"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; gghighlight = derive2 { name="gghighlight"; version="0.1.0"; sha256="1mfjvfm5xbih7k7qz6x8akbqgh0b18dz9pybfgh7rbq2ppwnhpy9"; depends=[dplyr ggplot2 ggrepel magrittr purrr rlang tibble]; }; - ggimage = derive2 { name="ggimage"; version="0.2.0"; sha256="0kaa6s1zp1cn5xwjpm31kzlmzaw2pd008ldjv34ab11z6yyw4k22"; depends=[ggplot2 ggplotify jsonlite magick rvcheck scales tibble]; }; + ggimage = derive2 { name="ggimage"; version="0.2.1"; sha256="1713xghrc77y8s7gwvjwz6w70psmrqxgk7sph5jzsfvjfjdnl3xv"; depends=[ggplot2 ggplotify jsonlite magick rvcheck scales tibble]; }; gginference = derive2 { name="gginference"; version="0.1.0"; sha256="0dikyqryz25ikm047clkwn0ihlxa5zia2bxp71fh8ynxxvzixz3k"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.0.1"; sha256="1yn5qfzih4caba8ilb1pkxzrrxcb0gia4kan7ch2yqdgi1jxqyhq"; depends=[ggplot2 magrittr rlang stringr tibble]; }; ggiraph = derive2 { name="ggiraph"; version="0.6.0"; sha256="1scz1c2272k1988qfnnd2dp90q7cah916007n9r7id2anc8fvavv"; depends=[gdtools ggplot2 htmltools htmlwidgets Rcpp xml2]; }; @@ -7417,10 +7444,10 @@ in with self; { ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; gglorenz = derive2 { name="gglorenz"; version="0.0.1"; sha256="0ar9ih6yvxb5pyba8y8jjsbwaq808baysjhpd15psjzhfbimjqfm"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; }; - ggmap = derive2 { name="ggmap"; version="2.6.1"; sha256="0mssb09w818jv58h7mly9y181pzv22sgcd4a079cfpq04bs0wigw"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; }; - ggmcmc = derive2 { name="ggmcmc"; version="1.1"; sha256="09b89cnmdmiwy18igzxjiq60l1xqjh022fw3rhd5kx7lnh02yza3"; depends=[dplyr GGally ggplot2 tidyr]; }; + ggmap = derive2 { name="ggmap"; version="3.0.0"; sha256="13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"; depends=[bitops digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rjson scales stringr tibble tidyr]; }; + ggmcmc = derive2 { name="ggmcmc"; version="1.1.1"; sha256="129zpafw6wvdb5jkzla3vdy7xsiiml3vhm1y664v8sfswifsj3rc"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmosaic = derive2 { name="ggmosaic"; version="0.2.0"; sha256="0byhp7125r015wbbnv6fq13bx38krf11r39jx9dzbr0ci6kqzkdb"; depends=[dplyr ggplot2 plotly productplots purrr rlang tidyr]; }; - ggmuller = derive2 { name="ggmuller"; version="0.5.1"; sha256="1wa4gcyzbwy1s200w57phahh6rwaf62qn3i400xywkf34fsi1il8"; depends=[ape dplyr ggplot2]; }; + ggmuller = derive2 { name="ggmuller"; version="0.5.3"; sha256="0qcphgal4c28lcwa1qdbryk40rkqpd4hz6phvcp6jy0n75lqi9f3"; depends=[ape dplyr ggplot2]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.1"; sha256="13qisn4msjzkpcmn7rh2c4ymqfxp9bayrvqngp9pysfmr6wvc6ia"; depends=[ggplot2 ggrepel network sna]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.1"; sha256="0fv6v41i3xlnxyjlv1vw22fl7y98xa1afr6smcxp7hfy29qgyrk1"; depends=[dplyr ggplot2 magrittr scales]; }; ggpage = derive2 { name="ggpage"; version="0.2.2"; sha256="0azf19dhc8zawm7hgsf866j3s028ybcfpmpmna86ly6z8d4j09xf"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; }; @@ -7438,7 +7465,7 @@ in with self; { ggpubr = derive2 { name="ggpubr"; version="0.2"; sha256="0rkpcjb1x7lvhj68aam5airbi534jqyiq12x5xk40a25iifhghq6"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr scales tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.1"; sha256="1akhndl08nq97nvz2gzblfqsrjpxx1m632f3469mab9z1jcvaz57"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.1.1"; sha256="06jj9z6hd1v21r4bxsl3lshqabcc3sfqaj731j9pimrs63z0vsf8"; depends=[colourpicker dplyr DT Formula ggplot2 ggpmisc ggrepel gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjs stringr survival table1 tidyr]; }; - ggquiver = derive2 { name="ggquiver"; version="0.1.0"; sha256="0p6li7cxjy54qrmaf9ja6aknnlxwq4sl0z1yip1mznb5rhv6lpxw"; depends=[dplyr ggplot2]; }; + ggquiver = derive2 { name="ggquiver"; version="0.2.0"; sha256="1hsayqxf4brck1rx97yyprw1axc83lksgf7mn3rh8hqx4h1f5f0f"; depends=[dplyr ggplot2]; }; ggraph = derive2 { name="ggraph"; version="1.0.2"; sha256="0fpmp326mryd1k1qvacjadksrnhbla8h960i18lmrimzrag7692c"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; ggraptR = derive2 { name="ggraptR"; version="1.1"; sha256="1lknd3vibysc00c6b59c0yq2r3dda7zn8bj7gxjzjv90jwpgl0b8"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; @@ -7449,12 +7476,12 @@ in with self; { ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggsignif = derive2 { name="ggsignif"; version="0.4.0"; sha256="1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.4.0"; sha256="0si3llqlb0dg482cqxhv5lm6raawqwpcd5ymjicw3780xq7d7mrk"; depends=[ggplot2 maptools png]; }; - ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.1"; sha256="0qk1219waymg8czr7vgdr0i31gzfr46zr0qjv8zgx5ba7ngdq12b"; depends=[dplyr ggplot2 magrittr tidyr]; }; + ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.2.1"; sha256="0gycd3yzdy58m22r62my5v0s00mr7ga7mcfa6i300arp47lzdwq1"; depends=[dplyr ggplot2 ggthemes kohonen tidyr tidyverse]; }; ggspatial = derive2 { name="ggspatial"; version="1.0.3"; sha256="0ka15qj3f0yq9nfkgk77wp490nz9ymi80918apv9zp6x39kcprj9"; depends=[abind ggplot2 plyr raster reshape2 rlang rosm scales sf tibble tidyr]; }; ggspectra = derive2 { name="ggspectra"; version="0.3.1"; sha256="0w9hrqxyrcds47g46bfccprrv0gykrmgqklmlig50zbnzssd3ac8"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; }; ggstance = derive2 { name="ggstance"; version="0.3.1"; sha256="0v7f3xdaaridw6d4jvnsfwxmpjrasvx5vl555wsrn50aah17fkvh"; depends=[ggplot2 plyr rlang withr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.7"; sha256="0rg38yhmaya18zl24scpdhzkla13z6r4526m6afmy6pnkfiplyrc"; depends=[BayesFactor boot broom broom_mixed coin cowplot crayon dplyr effsize exact2x2 ggcorrplot ggExtra ggplot2 ggrepel ggsignif glmmTMB glue groupedstats jmv magrittr paletteer PMCMRplus psych purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.8"; sha256="1vd3nyplck73fsg6mxccagslrdck36r3h1gb9ph4nfyafzzbiv52"; depends=[BayesFactor boot broom broom_mixed coin cowplot crayon dplyr effsize exact2x2 ggcorrplot ggExtra ggplot2 ggrepel ggsignif glue groupedstats jmv magrittr metafor paletteer psych purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="3.1.0"; sha256="1fhs5s3sxhb46abzni7cyymyknk9z7ff8fanln41pkih76s5i18j"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.0.1"; sha256="0y6570wv135sf7pv57l7bqilzw47rziaqx4vsk45pf1w4lmj0w8b"; depends=[ggplot2 purrr scales stringr tibble]; }; @@ -7475,7 +7502,7 @@ in with self; { gimms = derive2 { name="gimms"; version="1.1.1"; sha256="06vq0apsadyfgnz7906v2kjy0nx3yn0agq4yschxz1r1zmgrnyki"; depends=[curl Kendall ncdf4 raster RCurl zyp]; }; giphyr = derive2 { name="giphyr"; version="0.1.3"; sha256="0q83my4l90873d1vbv42rqyajcnr0rjgp4jcxy77cha0l5rxjsyg"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; gistr = derive2 { name="gistr"; version="0.4.2"; sha256="0bh325pf37v307isdlvdglripfki8xr6gh7n8mgi4cjparzhrh23"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.23.0"; sha256="01250jz255fnyy2ap90nskvzhd8nhlmbhwgpvb43mk1fax077lrz"; depends=[]; }; + git2r = derive2 { name="git2r"; version="0.24.0"; sha256="0vfc25z4j53pc49cnp3zjwzjb72kvc0aq96wgyg10xpgvhl3z0gg"; depends=[]; }; gitgadget = derive2 { name="gitgadget"; version="0.2.1"; sha256="02jmp5lnk156sfqlv91jn42xds98ihya1x2f97cfwpzlas5qrxky"; depends=[curl dplyr jsonlite miniUI rstudioapi shiny]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; gitlabr = derive2 { name="gitlabr"; version="0.9"; sha256="0i9sqqvn9xzknybsj9nmi6kclw8c35shy658li17455d28gv4653"; depends=[base64enc dplyr httr magrittr purrr stringr tibble yaml]; }; @@ -7508,16 +7535,15 @@ in with self; { glmgraph = derive2 { name="glmgraph"; version="1.0.3"; sha256="16sq6i7kbw20nvwikpa02z3pb7wqw3270j6ss7f8sgf548skhmx0"; depends=[Rcpp RcppArmadillo]; }; glmlep = derive2 { name="glmlep"; version="0.1"; sha256="0jnm3cf2r9fyncxzpk87g4pnxbryqcxxrc5y2a80pv48al3sxlzk"; depends=[]; }; glmm = derive2 { name="glmm"; version="1.3.0"; sha256="088m626c2f75ij457mskdyi927y6g01m5rgfsjaxpm7xbywk51sw"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; - glmmBUGS = derive2 { name="glmmBUGS"; version="2.4.2"; sha256="1c4nxm6hv2x9acjss9psnh87ldsrxidnrxn01rjxbmihziyirp0y"; depends=[abind MASS sp]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-1"; sha256="0w6q504map1frx7ch2gb7557xmc361lngsw2f80bnrlchj43rdgg"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; glmmML = derive2 { name="glmmML"; version="1.0.3"; sha256="1svawi74rfir9czqyf194wmh4fw053n81j7prnanyfskrchkd94k"; depends=[]; }; - glmmTMB = derive2 { name="glmmTMB"; version="0.2.2.0"; sha256="1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; + glmmTMB = derive2 { name="glmmTMB"; version="0.2.3"; sha256="035hkywa37bz555fv6znxd4hfcs5w884365wfnwk4jx5vann4vvb"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; glmmboot = derive2 { name="glmmboot"; version="0.3.0"; sha256="145sz9gs2rncc9bygzjh24drmg8qgi1b02vxld5apmp3kayw5dby"; depends=[]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.1"; sha256="0jma7mkd4gaad9i14pxvizln3sgbw1m7asvcc8fnflkhcyjb1lm8"; depends=[assertthat BH broom cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders]; }; - glmmsr = derive2 { name="glmmsr"; version="0.2.2"; sha256="05psf6yjsp3zgh7lfdh2pk1zycp7rgdk61ccm7059f60dzg182b9"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; + glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; glmnet = derive2 { name="glmnet"; version="2.0-16"; sha256="1brr51z1fzbpyj6myyir4g6dhbp6xwl7nx4xnvrjarnf5y0csk55"; depends=[foreach Matrix]; }; - glmnetUtils = derive2 { name="glmnetUtils"; version="1.1"; sha256="0abvxkwfadh56672qh16vql49js9ar8cz8is0bs6i8jgsl5csz91"; depends=[glmnet Matrix]; }; + glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.1"; sha256="1glgrdpkay569xxrrfyrs3s6cwqp475bzav35sv299lj1z0y39iz"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.4"; sha256="1fizw48lwhdyzfdmhl1hhcv7pfjf2zm8b96m2hcwm1ckvshf5j76"; depends=[glmnet]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; glmpathcr = derive2 { name="glmpathcr"; version="1.0.7"; sha256="18i0ivvxyirgbp5qjc2av1wanang9pbjimwva448ighad7m2dsqr"; depends=[glmpath]; }; @@ -7534,7 +7560,6 @@ in with self; { glpkAPI = derive2 { name="glpkAPI"; version="1.3.1"; sha256="06p8zvmshymcw994mmf1ar00kfj645z8dp18yy4i5bl6qydbpb8k"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; glue = derive2 { name="glue"; version="1.3.0"; sha256="1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq"; depends=[]; }; - glycanr = derive2 { name="glycanr"; version="0.3.1"; sha256="1wygy5r5rdkcxrraqkqs2kd0nj8x2whm6k556pyd1sa4ra8xgvjp"; depends=[coin dplyr ggplot2 tidyr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="0.7.1"; sha256="1gniwwl0ci0wm7a3ai2lqrr590smmkdgyf3aarw6bdygn8hr3s3y"; depends=[base64enc crayon httr jsonlite magrittr mime]; }; @@ -7550,12 +7575,11 @@ in with self; { gmt = derive2 { name="gmt"; version="2.0-1"; sha256="1g1sj9gq3h3s0pdcfvzg7iifkns5azn3pa83if0d3yzc28cjf0yz"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="1.0.3"; sha256="1497n11a7m5mbb8d3hcr89yhfh64vqsxi2w6kvlrxmmx95q2cp70"; depends=[Brobdingnag mvnfast pbapply]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; - gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; }; + gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.1-0"; sha256="01d7wxsh4d9w4jh8vn62sjzgpll650yl3klfhlaa8j0qwpxr2fml"; depends=[MASS Matrix nnet qvcalc relimp]; }; gnmf = derive2 { name="gnmf"; version="0.7.1"; sha256="1vbcsxg61mlsdir8szd0rdxfswr7kr6a07750ar2l9b4rkg3yfqz"; depends=[]; }; gnorm = derive2 { name="gnorm"; version="1.0.0"; sha256="17h43qwb07wk5hiif89k6dgn6bbdsqfy2jy3k5blbdhhp3b9jcqp"; depends=[]; }; gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; - goalprog = derive2 { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl3494lpfjnp1ddklc17nhgw18362jd1nk14awy"; depends=[lpSolve]; }; goeveg = derive2 { name="goeveg"; version="0.4.2"; sha256="0k9pyph065x8wp452x8kz28ikhsbrm80ln4yssmcgqm7085dyyya"; depends=[cluster fields Hmisc mgcv vegan]; }; gof = derive2 { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; }; gofCopula = derive2 { name="gofCopula"; version="0.2-4"; sha256="1v54vhjhavz74bmnppp2cda4qsd57s2vh2j2d3ilwzbycva7kmkl"; depends=[copula doParallel foreach MASS numDeriv R_utils SparseGrid VineCopula]; }; @@ -7577,7 +7601,7 @@ in with self; { googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googleVis = derive2 { name="googleVis"; version="0.6.3"; sha256="1vxnq3jgccqsqv3zwyh74r3iws0rpr8wsagj9nc7paz6sk2h9l8p"; depends=[jsonlite]; }; - googledrive = derive2 { name="googledrive"; version="0.1.2"; sha256="04167xqdfj99jp5i1029caah1wy9dpbwm7n543x7fmsik7czc2g5"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; }; + googledrive = derive2 { name="googledrive"; version="0.1.3"; sha256="1vv5vk3z93w1pm3jylj94ivdis2vi9wk10gakww11snpi3x2by4h"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; }; @@ -7588,10 +7612,10 @@ in with self; { gpDDE = derive2 { name="gpDDE"; version="0.8.2"; sha256="100g2f8zlpbwxb46h62pgvidll8aflz1zl4inyh8dml6vhm9pilp"; depends=[CollocInfer deSolve fda forecast lars limSolve MASS nnls penalized trustOptim TSA]; }; gpairs = derive2 { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive2 { name="gpclib"; version="1.5-5"; sha256="08j81b8wymsgin20n54gvm6m54rmdic51p6qzs9cz4pmgl7dkkjv"; depends=[]; }; - gpg = derive2 { name="gpg"; version="0.5"; sha256="1l13wwmhayyhgl2m3r5f5p3m3y3z3pcj38liywx6a24hpxmir7pp"; depends=[curl]; }; + gpg = derive2 { name="gpg"; version="1.1"; sha256="0x7z724vd43bslaqn1vgn4la8ciqi4129dwazq89llsn8mnsklb7"; depends=[askpass curl]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; - gplots = derive2 { name="gplots"; version="3.0.1"; sha256="02nb8n3s7c1zxq2s7ycaq2ys72y7mzirxrwj954h6gdc4x1zhg9l"; depends=[caTools gdata gtools KernSmooth]; }; + gplots = derive2 { name="gplots"; version="3.0.1.1"; sha256="033plcfs9w8pmn84n24mdhiixdirc2a7pz6dvm61fpd20gwh7cbx"; depends=[caTools gdata gtools KernSmooth]; }; gpmap = derive2 { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw0gans048vsn7chyzjhyr7ah5xrfg"; depends=[foreach ggplot2 isotone plyr]; }; gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gpr = derive2 { name="gpr"; version="1.1"; sha256="03ywik11kc6cnaqrzzzi94jkrdbd378m3sf26f2vpb7d834nl728"; depends=[]; }; @@ -7599,7 +7623,7 @@ in with self; { gpuR = derive2 { name="gpuR"; version="2.0.0"; sha256="1aq9gmnl69yw7124nr8jaih7598gkknp7krmdsnx600i4k37yzjs"; depends=[assertive BH Rcpp RcppEigen RViennaCL]; }; gqlr = derive2 { name="gqlr"; version="0.0.1"; sha256="0qvyvy514ma5wi2qm6a8praqa7js9wl0hh0ack1hknw33g2gyqhy"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; - grImport = derive2 { name="grImport"; version="0.9-1"; sha256="1qhyw5wiyfqw1wcpvcgdwc1vgaz7j7dbc7qa5h85qgml7hb68mjv"; depends=[XML]; }; + grImport = derive2 { name="grImport"; version="0.9-1.1"; sha256="19d05ygpiv47lfzhfih35pdfll0axbrgd6p86l59mmg2d0j0s8bd"; depends=[XML]; }; grImport2 = derive2 { name="grImport2"; version="0.1-4"; sha256="1hwx287pp936f0wbcicplwmhz96ip00wq09dp7bvz80lqcmr8nyx"; depends=[base64enc jpeg png XML]; }; gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; @@ -7614,9 +7638,10 @@ in with self; { graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.2"; sha256="1jzhqbdylpzc8d28vz2k34i9dpxx5x34bgvx73z8wjglnn6j27b8"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; graphkernels = derive2 { name="graphkernels"; version="1.6"; sha256="1gn3ihqz7m0rdvvc2fp7hsgq583wh5cnz7200a2ff89xc04zs3dc"; depends=[igraph Rcpp RcppEigen]; }; - graphon = derive2 { name="graphon"; version="0.3.0"; sha256="0w5xgfhshdinwyyb3qc2rhz37w6n0p1clp83dz1vx67n2vbj7wha"; depends=[Rdpack ROptSpace]; }; + graphon = derive2 { name="graphon"; version="0.3.1"; sha256="0hi8zsmbvgb34dx9hcc6fx67f1kasj9hm1qhhkg785phf32zdj8x"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5"; sha256="0zi1l93yk5rlgdy4j2nph14w0h8kgvnbzk9fi2jfys8s3fz54ksr"; depends=[jsonlite Rcpp]; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; + gratia = derive2 { name="gratia"; version="0.2-1"; sha256="0c8gzjyn5p6k1qpsnf1kzby1w76lndlzpahfyi8hk0ccdhvyv78p"; depends=[cowplot dplyr ggplot2 mgcv mvtnorm tibble tidyr]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; grattan = derive2 { name="grattan"; version="1.7.0.0"; sha256="1jy3yafymznb2bnjy9njh3sn422vsmmdlzs2is941y3syzji6l84"; depends=[assertthat data_table fastmatch forecast hutils ineq magrittr Rcpp rsdmx zoo]; }; gravity = derive2 { name="gravity"; version="0.9.0"; sha256="1jp4mr4jnb9bqbjv2bs40qnag2l77nylg8y94yv6p4gwh6l6l9dm"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; @@ -7626,7 +7651,7 @@ in with self; { greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; greta = derive2 { name="greta"; version="0.3.0"; sha256="03yjf8cs4z2y1pjl7qvv2icp16f5xykd725mf1vs4zk04asq4xna"; depends=[coda future progress R6 reticulate tensorflow]; }; grex = derive2 { name="grex"; version="1.8"; sha256="0z81dlzk5vv51nwhfiijzpxgf71m4fsrfqzrbxx2kyf3f8c9xg1r"; depends=[]; }; - greybox = derive2 { name="greybox"; version="0.3.3"; sha256="15kba0srhv182a9vnb7sfm9k8084g6jkdah17pi4n486awam009c"; depends=[forecast lamW nloptr numDeriv]; }; + greybox = derive2 { name="greybox"; version="0.4.1"; sha256="1psa55hji99a8km5fnl0is3bjw2v50hqsb5lkkwns1x95wzv7rxs"; depends=[forecast lamW nloptr numDeriv]; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; grf = derive2 { name="grf"; version="0.10.2"; sha256="1p3h32hw8wcafyxgdmk21d71j74kfksf6nsilfgir1j8rf37zkmp"; depends=[DiagrammeR DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; @@ -7645,12 +7670,12 @@ in with self; { groupdata2 = derive2 { name="groupdata2"; version="1.0.0"; sha256="11j5p3afr5qc227ljdwwwp17jzaylqlhc7g0gr3jvgrhjnijs2a0"; depends=[dplyr numbers plyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.3"; sha256="15ah8v1mfyq9xi27kkl0vwwbhf16vd4hy9h809jlw1i7b1zwg4pm"; depends=[BH doParallel doRNG foreach qvalue Rcpp RcppEigen]; }; - groupedstats = derive2 { name="groupedstats"; version="0.0.4"; sha256="1yzlrpvbkijqahil8njbffzfcjzc3zqndz2q2dyaf8ihdhlnzad1"; depends=[broom broom_mixed crayon dplyr glue lme4 magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; }; + groupedstats = derive2 { name="groupedstats"; version="0.0.5"; sha256="053rpxcymhbvanl9mxzdm4bkkkg6yxjg0xd205ib3kxa2xdssxxr"; depends=[broom broom_mixed crayon dplyr glue lme4 magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growcurves = derive2 { name="growcurves"; version="0.2.4.1"; sha256="0h96c1hd6cdzc2l2a9dakmxn2hspvr0fpx9938iscm4hi9ds97m2"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; }; growfunctions = derive2 { name="growfunctions"; version="0.14"; sha256="1pvyiw20fxm3l4giyq4iizc67yy36i6wq4ch2qyqg4mfd4bki2g4"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo reshape2 spam]; }; - growth = derive2 { name="growth"; version="1.1.0"; sha256="0d1hc56ybp5chckqv5q5jvpgbl7xn9dkbc4dd4sz5gawn1hngbxm"; depends=[rmutil]; }; + growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; growthcurver = derive2 { name="growthcurver"; version="0.3.0"; sha256="0q7g00b9sxxlq8yscmmccr8r4mwzpc707arbrr46iii8ra9icvlb"; depends=[minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; @@ -7692,6 +7717,7 @@ in with self; { gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.4.2"; sha256="1rph2iv9dirzw1acgq7n56ra20jdynq99biah5v6nybmxdbmznzd"; depends=[anytime curl ggplot2 jsonlite]; }; gtx = derive2 { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; }; + guardianapi = derive2 { name="guardianapi"; version="0.1.0"; sha256="0gs0wb6k4isbhw4zbpzkxw4m0i13j15jk1zyf0mj7vg7zvrwms00"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; @@ -7700,7 +7726,7 @@ in with self; { gvc = derive2 { name="gvc"; version="0.5.2"; sha256="0cfvli6ap5kw3agv94d7g7rhmlxd66yyngc7c9pl4fsxf7sm6nx4"; depends=[decompr diagonals]; }; gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; }; gvcm_cat = derive2 { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; }; - gvlma = derive2 { name="gvlma"; version="1.0.0.2"; sha256="0gj52hg665nmlwgbjh9yvz7a3sbzlbj41ksxchnnlxaxipdf6sl8"; depends=[]; }; + gvlma = derive2 { name="gvlma"; version="1.0.0.3"; sha256="16dhd407bwjs91c3p9kk43646197s7n9vbyghxb4ckrpv3fsaxp0"; depends=[]; }; gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; }; gwerAM = derive2 { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; }; gwfa = derive2 { name="gwfa"; version="0.0.4"; sha256="0jz82d9lfyd07z0jjlfqzsg7a3vnyz0s1j0rrb5sg9pnvcfjk9qy"; depends=[Rcpp sp]; }; @@ -7708,32 +7734,33 @@ in with self; { gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; }; - h2o = derive2 { name="h2o"; version="3.20.0.8"; sha256="17piklf91fmpf7bl4sk300bwnvsxljad925whs2h12xhqgw3amgv"; depends=[jsonlite RCurl]; }; + h2o = derive2 { name="h2o"; version="3.22.1.1"; sha256="04n47wjhjz8wa2axnxyxgrm216srjla5d8asn7ngyhka586xbjg4"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.2.0"; sha256="06d2rrr27xvnsai6zjiaiw0jjfzdza1cc39c03d6pjkvnh0mqh2c"; depends=[magrittr reticulate]; }; h5 = derive2 { name="h5"; version="0.9.9"; sha256="14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"; depends=[Rcpp]; }; - hBayesDM = derive2 { name="hBayesDM"; version="0.7.0"; sha256="0j4q7q44x407b973s7jz5zvfp3k8rnnpm558pfbygmakqv1cwz35"; depends=[BH data_table ggplot2 loo Rcpp RcppEigen rstan StanHeaders]; }; + hBayesDM = derive2 { name="hBayesDM"; version="0.7.1"; sha256="07dv70yybcwv0989jay1966bpm9cr44mkxwm4wdimhzzxw3y84m4"; depends=[BH data_table ggplot2 loo Rcpp RcppEigen rstan StanHeaders]; }; hIRT = derive2 { name="hIRT"; version="0.1.3"; sha256="12rg4srh9s6a72gvb5f7qn9zar6yaqa7p0mfmazfqj353icrannd"; depends=[pryr rms]; }; hNMF = derive2 { name="hNMF"; version="0.9"; sha256="0qavavgiqah4dv0gz8v5ssz637sd341n9s0pyc232n2jhqpzl0cz"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; - hR = derive2 { name="hR"; version="0.1.4"; sha256="0ylqn7fv8dbhiqa6q41ajvh59yjmw18gpwvnm4fsna67q5wj98ql"; depends=[data_table data_tree]; }; + hR = derive2 { name="hR"; version="0.1.6"; sha256="1rwcxyi4rkfl4vk6hby2i49k7mwvi6p52y5ch9c8v2qb756i5qk1"; depends=[data_table data_tree]; }; hSDM = derive2 { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; hablar = derive2 { name="hablar"; version="0.1.0"; sha256="0l7xb2z41ddm1dlq3f0k00wdskai17wcwfkia1y1k88vqjcakpzg"; depends=[dplyr]; }; hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; - hansard = derive2 { name="hansard"; version="0.6.0"; sha256="13h68b300c4lkqbl5gw4hkqcbb2ikvan4hx8092ds995514rg4x8"; depends=[dplyr httr jsonlite lubridate stringi tibble tidyr]; }; + handyplots = derive2 { name="handyplots"; version="1.1.3"; sha256="0pcl0iichdw2lkv8y00mv6n6c0rvrnsk75ka5lwm2g7b64pphsvk"; depends=[]; }; + hansard = derive2 { name="hansard"; version="0.6.3"; sha256="087f14l1x330wrz2m5pmdgnwg4flx2ps26c51zdp703s1k4gschb"; depends=[dplyr jsonlite lubridate tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; haplo_stats = derive2 { name="haplo.stats"; version="1.7.9"; sha256="19kxascqq5qz0zdxx0w837ji207y1z2ggxkl4vmlbay03k2dw2mx"; depends=[rms]; }; - haploR = derive2 { name="haploR"; version="2.0.6"; sha256="0f0i687wrsmli1z48vghwbd4595nwvv2bajnn0jkyi9fw9r2vnn0"; depends=[DT httr plyr RUnit tibble XML]; }; + haploR = derive2 { name="haploR"; version="2.0.7"; sha256="1942xn79fimz42j5wl7r0f52jw9b99c9qhx0hhms9zn38xddvhv7"; depends=[DT httr plyr RUnit tibble XML]; }; haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; - harmonicmeanp = derive2 { name="harmonicmeanp"; version="1.0"; sha256="071ysgyi8daq8q1vqzgypkz4bgaxr0iw4djv906vkfx5ywihr768"; depends=[FMStable]; }; + harmonicmeanp = derive2 { name="harmonicmeanp"; version="1.1"; sha256="1lfnxknj4hm7m64i3v4bwhv84w1r4b7bd45rhsyfhg3ag9lg93ka"; depends=[ape FMStable knitr]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; - harrypotter = derive2 { name="harrypotter"; version="2.0.0"; sha256="0q7b20f2l7d1ljbfw3kg8qqq78ccp4n7wj4dacd28ab1hgzwm7yr"; depends=[ggplot2 gridExtra]; }; + harrypotter = derive2 { name="harrypotter"; version="2.1.0"; sha256="151kpg47b1hyv6rc3cksykqw8pz0xqm0q9xf9sxa2w14ibymvc8k"; depends=[ggplot2 gridExtra]; }; harvestr = derive2 { name="harvestr"; version="0.7.1"; sha256="0xgxzbfbc33asfm8sl2y60ki6bwgd6vdh9nz466crkx7m9lsvll8"; depends=[digest foreach plyr]; }; hash = derive2 { name="hash"; version="2.2.6"; sha256="0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"; depends=[]; }; hashFunction = derive2 { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; }; @@ -7750,6 +7777,7 @@ in with self; { hbm = derive2 { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[doParallel foreach Matrix]; }; hbmem = derive2 { name="hbmem"; version="0.3-3"; sha256="1rajd5h9gp0rrpc0q0m0fx37mv2n70da3gnfvvnjc5a77mzfyqkp"; depends=[]; }; hbsae = derive2 { name="hbsae"; version="1.0"; sha256="1iwmpi0pn5fxyxkwqkbmy6w1f1wcx0p809jnviim0ypwib32mhh7"; depends=[arm Matrix]; }; + hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; hcc = derive2 { name="hcc"; version="0.54"; sha256="14b3pamkywb0wsjpbm0wpflcds0b5mfymvgk92rmf6ngz1bkpdbq"; depends=[]; }; hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; @@ -7761,7 +7789,7 @@ in with self; { hdf5r = derive2 { name="hdf5r"; version="1.0.1"; sha256="0h222q80li8rs3cv4c5lvv3g91ygd51w43ay6fwyk9q9d315vwrj"; depends=[bit64 R6]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; - hdm = derive2 { name="hdm"; version="0.2.3"; sha256="0nj7pbkygzbiraw1b3pqv3bnkjhi1a0h48q0zgkcq8y79kj2f8cl"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; + hdm = derive2 { name="hdm"; version="0.3.1"; sha256="1kibfc1fc94y1vk06nn0yfvpdzcm30a1jn89lqqfma70x5jpa25s"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; hdme = derive2 { name="hdme"; version="0.2.1"; sha256="0kcpc0ygjk8d6v099x1m5hi6dbapjcc0lzjsg9779i6bbf43mls2"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack]; }; hdnom = derive2 { name="hdnom"; version="5.0"; sha256="0g7l5km18j11qfw8iq9ybl8lzdq6fk2g7cjc2yjsm3ava60n4xqh"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; }; @@ -7773,37 +7801,34 @@ in with self; { heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; heatmaply = derive2 { name="heatmaply"; version="0.15.2"; sha256="0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; - heatwaveR = derive2 { name="heatwaveR"; version="0.3.3"; sha256="0j2p1lndzsp90hcnf2w4wn3brjs1si1ag1qk8n1jxy3c3wlapiak"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; }; + heatwaveR = derive2 { name="heatwaveR"; version="0.3.6"; sha256="0bm6q4wgyvzs83hnkyhj21h422hpq5wnxajlp2bcrbmcr7r8nfwg"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; }; heavy = derive2 { name="heavy"; version="0.38.19"; sha256="15bg2qqkslkqfnsq3ixbgmq72xagh8laji0265l06xgf2l6045kx"; depends=[]; }; hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; - heemod = derive2 { name="heemod"; version="0.9.2"; sha256="0qln5c4m11vxpsa0l07qrzs006b05hsl342pc5dgz0hwdpn5dd9j"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr tibble]; }; heims = derive2 { name="heims"; version="0.4.0"; sha256="0vnq31jwn09grni4gdhf1hzd87b62as4f65b2qw7ky6mi38ahr5d"; depends=[bit64 data_table fastmatch hutils lubridate magrittr]; }; helixvis = derive2 { name="helixvis"; version="1.0.1"; sha256="113rnpnrcnw18ks78fgq79zdrw3kmpzpimlc45gvj0za2fbyci3p"; depends=[ggforce ggplot2 rlang]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; - helminthR = derive2 { name="helminthR"; version="1.0.6"; sha256="0h4r0f6aaxh0bgcmrvbsh7vkw2jhw1xqnnx9bzqai0s842697m88"; depends=[ggmap httr knitr magrittr plyr rmarkdown rvest xml2]; }; + helminthR = derive2 { name="helminthR"; version="1.0.7"; sha256="16dkmxs94h48d07c73jznjgg368j9291m98xi7fbbjn4d4cqm7mm"; depends=[httr knitr magrittr plyr rmarkdown rvest xml2]; }; helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; heplots = derive2 { name="heplots"; version="1.3-5"; sha256="1vyhfkp66gi17jni3gsbv9kn1s0n00qigr13q8xbzbgylz5jjiln"; depends=[car MASS]; }; here = derive2 { name="here"; version="0.1"; sha256="1vb5dxqdpimy51q1gjsypyq14p2hhvj7wsvh6g35pj1g03cyg9av"; depends=[rprojroot]; }; - hergm = derive2 { name="hergm"; version="3.2-1"; sha256="0r59qkbcqvsw7pcpas636crrj710j61swjknyr5vm22da90wzj1v"; depends=[ergm latentnet mcgibbsit network sna]; }; + hergm = derive2 { name="hergm"; version="4.0-0"; sha256="03qfl7zbn7rzb95bddwyxcwxb2jjxz4y7wh9gp8ga9lxj2q8hdqk"; depends=[ergm igraph intergraph latentnet Matrix mcgibbsit mlergm network Rcpp sna]; }; heritability = derive2 { name="heritability"; version="1.2"; sha256="18snrfsjj5jw5qicj92d5qch9v4ciqw1hbiwg6q8kfjka9nmqpma"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; hero = derive2 { name="hero"; version="0.0.3"; sha256="166jqxlp2x459ixm83kw55ssd86041qiwfymsk035r5aaf7nvjq1"; depends=[]; }; hesim = derive2 { name="hesim"; version="0.1.0"; sha256="002phncl1glv3c3gwp9ifpk56j06rka26a3774xlj3zcs6izglns"; depends=[data_table Rcpp RcppArmadillo]; }; het_test = derive2 { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; - hetGP = derive2 { name="hetGP"; version="1.1.0"; sha256="1m752a250msayqz8kwdi1r6lrww9pmc6qb6l9hlnfl2ds3qiks83"; depends=[DiceDesign MASS Rcpp]; }; + hetGP = derive2 { name="hetGP"; version="1.1.1"; sha256="1f0lb91hb6lp9cfil1qpbqf032xv697jazcqyc1y694hdbx0jwqj"; depends=[DiceDesign MASS Rcpp]; }; hetmeta = derive2 { name="hetmeta"; version="0.1.0"; sha256="023bdjsv0ibisz47vaap9yamzjna4hhndk3haw2g1cm92wnrdra5"; depends=[metafor]; }; hett = derive2 { name="hett"; version="0.3-2"; sha256="1kmspw0738pdall5scmllsa79dynliai2glk1h5rzm4030r5rd6j"; depends=[lattice MASS]; }; heuristica = derive2 { name="heuristica"; version="1.0.1"; sha256="1myivlqw6a8wh97ma9lrpgvaqb0vn4kj8yp9r4z5vc4pxgmm48g6"; depends=[Hmisc]; }; - hexSticker = derive2 { name="hexSticker"; version="0.4.4"; sha256="0djrf0kgjndvvqc6bd6agbfwd790axv2jycd38in9lsn8fzhxnb7"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; + hexSticker = derive2 { name="hexSticker"; version="0.4.5"; sha256="1js6b7g4za3g6mcsf3znf0bps4qhg2h27cxg7cxcxj98mhyv8s8k"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-3"; sha256="0cx5hl70sk1wk24na21vjyv50b2358z1plvvcw604qf1zij4icwn"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.27.2"; sha256="0lpfl0015lg5x7lvv9dr302bca22c7fs91pnd896ypgpzqg7pm26"; depends=[lattice]; }; hextri = derive2 { name="hextri"; version="0.6"; sha256="05rvigi225npncbr1brc6apc7gsg9a5jzcbmhvflwp3hbcg3hn02"; depends=[FNN hexbin]; }; hflights = derive2 { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; hgam = derive2 { name="hgam"; version="0.1-2"; sha256="1flcc67n8kbh9m5phdfl587xg1x935zbp305y0gdmkc8vpkiwpcf"; depends=[grplasso lattice rgl]; }; hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; - hglm = derive2 { name="hglm"; version="2.2-0"; sha256="0gb61yb1kk4dsb4i6sdh0r2ba7byl7hm5fqy8f12v1l4q40ymwq7"; depends=[hglm_data MASS Matrix]; }; - hglm_data = derive2 { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[MASS Matrix]; }; hgm = derive2 { name="hgm"; version="1.17"; sha256="11hv4pfv3gqiargvwvrxqzfji75j291w1nilawf8yjc3isnc4wjp"; depends=[deSolve]; }; hgutils = derive2 { name="hgutils"; version="0.2.5"; sha256="1wj2h1k1sfji5aph8r4pg94zlgq4rvxwilqhnp5q0pfvw8j656zh"; depends=[crayon limSolve magrittr stringr]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.0"; sha256="17f31xhh6kk7sx5d5dvpwpvl72wd45zgb4fcpdayx3yrm719csz9"; depends=[surveillance]; }; @@ -7822,7 +7847,7 @@ in with self; { highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; highSCREEN = derive2 { name="highSCREEN"; version="0.3"; sha256="179l82n7l7dfn40k6zgigw56ggwqyi34gllc2wvcw3yvfnd3l7s4"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; - highcharter = derive2 { name="highcharter"; version="0.5.0"; sha256="1myypff80mxcgc3j0sflalhqz344c2zz2p90aarli1pbys9v8ynp"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlist stringr tibble tidyr xts zoo]; }; + highcharter = derive2 { name="highcharter"; version="0.7.0"; sha256="0qfv25dqr7l54jq3vrnwphsj7wzk0an3vfx1zik36wi05yf2w8br"; depends=[assertthat broom crosstalk dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlang rlist stringr tibble tidyr whisker xts yaml zoo]; }; highfrequency = derive2 { name="highfrequency"; version="0.5.3"; sha256="1d218504ghg8d3cwmsxwkznxpr2wy5li062i2lynbxzrhrk59i0l"; depends=[chron cubature MASS mvtnorm numDeriv robustbase sandwich timeDate xts zoo]; }; highlight = derive2 { name="highlight"; version="0.4.7.2"; sha256="0xc1akglgby3qd6c9y2rhcd0gpfihx5jvakji38vzlxb1m21sn10"; depends=[]; }; highlightHTML = derive2 { name="highlightHTML"; version="0.2.1"; sha256="06k2idx9aadjd6xp6kadm9jh7ap1hwg7vh0bc8vw9ll82wcp1nv1"; depends=[]; }; @@ -7835,13 +7860,13 @@ in with self; { hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; hipread = derive2 { name="hipread"; version="0.1.1"; sha256="1x3h52qjjv44ssifhz73xc55vv1wjrsmc021f9ida14m2dy3nwfv"; depends=[BH R6 Rcpp rlang tibble]; }; - hisse = derive2 { name="hisse"; version="1.8.9"; sha256="0vzmi6854iil2p9vw8h8jpgf4pqqnnss8vj5kvqyw8c13205r14p"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; }; + hisse = derive2 { name="hisse"; version="1.9.0"; sha256="0979dn07pv6gk2avahvdpw0hr2l8j6chaj4r8rrrw97cbkdpp0vy"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; }; histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-24"; sha256="1jihw92zi5a4dj6lzm1qvkynv9fp6j5iy83g8rzikp276x63nb62"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; histry = derive2 { name="histry"; version="0.2.4"; sha256="01rdpzkfq7nyiq1gh0cm89dn3466cmhgfj9x19lhl2yvh8xsdz8x"; depends=[CodeDepends evaluate fastdigest roprov]; }; hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; }; - hitandrun = derive2 { name="hitandrun"; version="0.5-4"; sha256="1cw6ya690ls7i07zbdjr27vlhww2d3c3ws3z7m20bfmwxb1pm3vz"; depends=[rcdd]; }; + hitandrun = derive2 { name="hitandrun"; version="0.5-5"; sha256="18zbyv7y7sv7g075swwbx6gmxf468vyl41d2cvq3am5c1rwhw1d4"; depends=[rcdd]; }; hive = derive2 { name="hive"; version="0.2-0"; sha256="0ywakjphy67c4hwbh6prs4pgq5ifd8x8inxjkigjiqz6jx3z852v"; depends=[rJava XML]; }; hkclustering = derive2 { name="hkclustering"; version="1.0.1"; sha256="19syq06y5dl0mcwyaxr7w1hj8ffp5s140j72djcz0lljhskzmp6f"; depends=[cluster]; }; hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; @@ -7861,7 +7886,7 @@ in with self; { homeR = derive2 { name="homeR"; version="0.3.0"; sha256="0gi383392rs7snb2l9760vkws5hqfikyaj3i7cyby9g1sc2s6yx8"; depends=[]; }; hommel = derive2 { name="hommel"; version="1.2"; sha256="006m28kfpzsz02nz8mhwjcn5b761fcpvhaw63c91x08ka89x4frl"; depends=[Rcpp]; }; homologene = derive2 { name="homologene"; version="1.1.68"; sha256="0i2ywr3rxryakp7qskgjc0pll9nskwngk5m2d2jikxxq2biqf5zj"; depends=[dplyr magrittr]; }; - homomorpheR = derive2 { name="homomorpheR"; version="0.2-1"; sha256="0qs4yimyfqx6rpxgh6h4z7vyb3qdxljnyvw1g8pxm4y75i0v6vz5"; depends=[gmp R6 sodium]; }; + homomorpheR = derive2 { name="homomorpheR"; version="0.2-2"; sha256="1iahq16nswlc3b87598206xdp24bg9v8acyjp1jivybl3fr4k3pq"; depends=[gmp R6 sodium]; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; }; hopbyhop = derive2 { name="hopbyhop"; version="2.1"; sha256="0j4m1zz0ijf1kw2m12g7bww3418b8pyjvvrzkm8xcryjil2xfmim"; depends=[]; }; horizon = derive2 { name="horizon"; version="1.2"; sha256="0b8m9ghfabjgdl155wh4gc4ng2lsvyfyhsy62pldbcix757b4ck9"; depends=[raster]; }; @@ -7879,7 +7904,7 @@ in with self; { hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; }; hrIPW = derive2 { name="hrIPW"; version="0.1.2"; sha256="0bgcz4v9cj3aajcp25bv4g7magj54n86qy5nmgr6kqm8sspy260x"; depends=[survival]; }; - hrbrthemes = derive2 { name="hrbrthemes"; version="0.5.0.1"; sha256="14nqv809i5cdmbzdpvcppf2r1qsjv0f4lk5w6s4sjinaf68rzpzg"; depends=[extrafont ggplot2 htmltools knitr magrittr rmarkdown scales]; }; + hrbrthemes = derive2 { name="hrbrthemes"; version="0.6.0"; sha256="0k6agxva3zqq3z9j8g7ismabvyr7j96qqidck23dgbgwgivjfkkq"; depends=[extrafont gdtools ggplot2 htmltools knitr magrittr rmarkdown scales]; }; hsdar = derive2 { name="hsdar"; version="0.7.2"; sha256="02sapg0gq2sxqr9kasczsghpam5w1ibrzcw2l17mk3kjgj88y3nb"; depends=[caret raster rgdal signal]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; @@ -7887,14 +7912,14 @@ in with self; { hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; htm2txt = derive2 { name="htm2txt"; version="2.1.1"; sha256="09q026yy8qm1fb3a4bf9vsp4j09kayl7xmk0p58ikar5l3bmfdjv"; depends=[]; }; - htmlTable = derive2 { name="htmlTable"; version="1.13"; sha256="03fhzd5600m2bssz6xjagklhk1d22gxamr408x8h3q7k1qwdxw71"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; + htmlTable = derive2 { name="htmlTable"; version="1.13.1"; sha256="1l44b33xgj2698k6nz17r8fl0ink14ryzng803apm9d6bnv357v8"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmltab = derive2 { name="htmltab"; version="0.7.1"; sha256="0lymagm7z6zn0ddygqxi831ikk74112lkqkbvs5j1djhmr359ajc"; depends=[httr XML]; }; htmltidy = derive2 { name="htmltidy"; version="0.4.0"; sha256="090rj1fzdsa8m4g33d4mx92dm8afh173i4hqa4zym8c909jwh9qn"; depends=[htmltools htmlwidgets Rcpp XML xml2]; }; htmltools = derive2 { name="htmltools"; version="0.3.6"; sha256="18k8r1s8sz1jy7dkz35n69wj20xhmllr53xmwb4pdzf2z61gpbs4"; depends=[digest Rcpp]; }; htmlwidgets = derive2 { name="htmlwidgets"; version="1.3"; sha256="04jsdh14l2zifbjpbbh23w7bxz1wpsas0zb2gy2zwv4yqamzzr7i"; depends=[htmltools jsonlite yaml]; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="5.1.5"; sha256="0mvsxrk7wkfn81hbk8a80fckiqiwdbvhq42k7c6lm69gamnbak2f"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; - httk = derive2 { name="httk"; version="1.8"; sha256="1snwqqvacxgl4cyadx5la87xh4kxiqpdmyq4szqz5r1aq2sxrr03"; depends=[data_table deSolve msm mvtnorm survey truncnorm]; }; + httk = derive2 { name="httk"; version="1.9"; sha256="1lz8ifcnc4jp02afw0cka8sqbhb2x4qxv4snikcdwpp87n6vikzn"; depends=[data_table deSolve magrittr msm mvtnorm survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.1.0"; sha256="11hdc1jj2jbgvsps1h55azq0cr2fl556k631ns9k0747sjfmy2k9"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; }; @@ -7913,6 +7938,7 @@ in with self; { hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; hutils = derive2 { name="hutils"; version="1.3.0"; sha256="03czrdrwpqjvghh8396fx9884l24ag1wrkfkvvr6n743qb60k1p8"; depends=[data_table fastmatch magrittr]; }; + hutilscpp = derive2 { name="hutilscpp"; version="0.1.0"; sha256="17761crl71mhhc1k0g9gb6bq3df1w9s5508k0i7b3p3zam6r40l1"; depends=[data_table hutils Rcpp]; }; huxtable = derive2 { name="huxtable"; version="4.3.0"; sha256="0qh4i769vn99h58l21xhf2bk45giancyfyc7cdhy711izxlfp2y1"; depends=[assertthat broom glue memoise rlang stringr tibble tidyselect]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; @@ -7929,7 +7955,7 @@ in with self; { hydroscoper = derive2 { name="hydroscoper"; version="1.1.1"; sha256="0fykbn3ri9ypyxcrsbwi5pmyzbfp5dvrzg4klhjp0f88yfz80nbm"; depends=[jsonlite pingr plyr readr stringi stringr tibble]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.6"; sha256="0xfl1r5ikx3lqfrrapig9k93ifl794psm798kis10psg8cqrxmkb"; depends=[]; }; hyfo = derive2 { name="hyfo"; version="1.4.0"; sha256="03xd4nm8zmc8gw8rml8svfim64xcslvpmdcldlri9cf89s8v35br"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; - hyper_fit = derive2 { name="hyper.fit"; version="1.0.3"; sha256="17f5i2i960796hl92y7ci9ffspway435r02kw1zk91lvfn927hng"; depends=[LaplacesDemon magicaxis MASS rgl]; }; + hyper_fit = derive2 { name="hyper.fit"; version="1.1.0"; sha256="0iylvjzgi0a9fblh331lc3h7f0m29xb70zwx0bjik0a4sisqx068"; depends=[LaplacesDemon magicaxis MASS rgl]; }; hyper2 = derive2 { name="hyper2"; version="1.0-4"; sha256="00999k891s5l2wcnn6ych1v60ckqd2qxyckrfxh4kxnq9891hqcx"; depends=[magrittr partitions Rcpp]; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; hyperSpec = derive2 { name="hyperSpec"; version="0.99-20180627"; sha256="12bgp3nm9mwi5w3v8a9fnm4a2cxid3la0r3sxs10azikn5yw0ib5"; depends=[ggplot2 lattice latticeExtra lazyeval testthat XML]; }; @@ -7959,7 +7985,7 @@ in with self; { iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iMRMC = derive2 { name="iMRMC"; version="1.1.0"; sha256="04wpqdds5vfqvl8n5g64vnyh4a40dxjh8l1bgw1vdz1372n0421g"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5"; sha256="0gr0nibfdmiyxz8n7pfcl1d2gxhl5g2pi9yhnmsvqzry4j3x27yw"; depends=[mvtnorm plotly]; }; - iNEXT = derive2 { name="iNEXT"; version="2.0.18"; sha256="0gmzs4d1lc2bq0b072ljg1hpxz19dcz3dv2fd16d06305s5kbhz9"; depends=[ggplot2 reshape2]; }; + iNEXT = derive2 { name="iNEXT"; version="2.0.19"; sha256="1824icipyyb01s09z5fzygnyx2rgdcjlizps3agwsjj393aii4gj"; depends=[ggplot2 reshape2]; }; iNOTE = derive2 { name="iNOTE"; version="1.0"; sha256="1969xmgfv9405r09zpd2icvjd9vvzw4dx5qaqxk1a0jvbvhp3h88"; depends=[CompQuadForm mixtools plyr]; }; iNextPD = derive2 { name="iNextPD"; version="0.3.2"; sha256="06wka2qr1jm3hvi8j0b19fr21v72gmqknz8dg0l5wl91m0prqns3"; depends=[ade4 ggplot2 iNEXT Rcpp]; }; iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; }; @@ -7979,18 +8005,18 @@ in with self; { ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; ibmcraftr = derive2 { name="ibmcraftr"; version="1.0.0"; sha256="0zm5j0a1wjj5agibp38h73qxpq0njvrhfq3077xhhfizcb3v24sb"; depends=[Rcpp]; }; ibmdbR = derive2 { name="ibmdbR"; version="1.50.0"; sha256="151gg05gcy5wpyvyflr4mc0jq1npxzq9pc4spjc81x2igd14c370"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; - ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.0"; sha256="17wqg8iyh7sz3vks7mpr8i2pffxzsi3s0f2f69ima4x12w0zcdhn"; depends=[htmlwidgets jsonlite]; }; + ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.1"; sha256="0dxsdsimqgs7lbbfx7h8l2r6xpwgy2r7cf2y1v8hkgapf6n5kjnk"; depends=[htmlwidgets jsonlite]; }; ibr = derive2 { name="ibr"; version="2.0-3"; sha256="1plyz4sl0i8qhk9dh3h7zvh9h8wqr589jvasmvp7r3slp4ndhp1r"; depends=[mgcv]; }; ibs = derive2 { name="ibs"; version="1.4"; sha256="06zyg6c083437nhilqfhcf6yzlvazkpxhi3dh5d3dqv2zhxixlz4"; depends=[Rcpp]; }; ic_infer = derive2 { name="ic.infer"; version="1.1-6"; sha256="14vcwx5592br4zky9mq82akwk8pfiz7p1rx2jvyb48prrs2mm9gy"; depends=[boot kappalab mvtnorm quadprog]; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; }; icRSF = derive2 { name="icRSF"; version="1.2"; sha256="1a7046lspk70cvrvzwzhnqcmc3cqa5a9bmzlw012jvcn39m2ca3l"; depends=[icensmis Rcpp]; }; ica = derive2 { name="ica"; version="1.0-2"; sha256="0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"; depends=[]; }; - ical = derive2 { name="ical"; version="0.1.5"; sha256="1fav17iqhb2pmb3rgf3a586h87hj5sd7gpabwaiccxk28sqhldzz"; depends=[V8]; }; + ical = derive2 { name="ical"; version="0.1.6"; sha256="1raanaagas1c8w66d8s045z5ip1i97xca4233d55jk6cazv0mb1w"; depends=[V8]; }; icamix = derive2 { name="icamix"; version="1.0.6"; sha256="0jys9r7wjxlwsq5rssih2lvsar1192w8vigdhhrcmf3d5z5ic1kp"; depends=[Rcpp RcppArmadillo]; }; icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; icarus = derive2 { name="icarus"; version="0.3.0"; sha256="1656bz0av59dpgndibn0bc5zr9zka9pmw7qmhjz2b956bh7sh4ag"; depends=[]; }; - iccbeta = derive2 { name="iccbeta"; version="1.1.0"; sha256="1xw0mz3ipkfz1jsjzwjnrm0af1gs31js7nvgy79cxqz31955zjww"; depends=[Rcpp RcppArmadillo]; }; + iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; icd = derive2 { name="icd"; version="3.3"; sha256="03b8dc98pk9i0brjqasav00kpvhwz0qkqgch0ynfjq0xifxnvrgq"; depends=[checkmate icd_data magrittr Rcpp RcppEigen testthat]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; @@ -8000,8 +8026,8 @@ in with self; { icesAdvice = derive2 { name="icesAdvice"; version="2.0-0"; sha256="0sx93fsx2srmynnvs3bjb525m9a5w70qr9lghmkqa07crd991vfr"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; icesSAG = derive2 { name="icesSAG"; version="1.3-4"; sha256="1s330691an1m5h1i342ls6igqcqrlrwyhapa82x5h2krdia0nmnp"; depends=[httr icesVocab openssl png xml2]; }; - icesTAF = derive2 { name="icesTAF"; version="2.0-0"; sha256="05jqrc8l96fhlz3wv1wsvrwy6wh5a0gigylzqc01zm2v0nl25vk9"; depends=[]; }; - icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; }; + icesTAF = derive2 { name="icesTAF"; version="2.1-0"; sha256="141gmq02zpy9kj901j3dj7s33zf44ablgc9zmqjf22a665gfxkpd"; depends=[bibtex remotes]; }; + icesVocab = derive2 { name="icesVocab"; version="1.1-3"; sha256="1q7nigf1ppdzx9v3mk8gjgj48bvx3cmxy7g4anxq7gmxb9mg2zl9"; depends=[XML]; }; icmm = derive2 { name="icmm"; version="1.1"; sha256="1w9f1rniz67rrvq0akc64s5433ddmr2cgbcljil4c58yyz8hinx8"; depends=[EbayesThresh]; }; icosa = derive2 { name="icosa"; version="0.9.81"; sha256="05gpiksncdi536f4py7szfi6myny1gqj8i0hsgpma7cfcm3npn0l"; depends=[igraph raster Rcpp rgdal rgl sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.3.0"; sha256="17sprbbi8fmvcp8d7hwrxl5amg0j036wq483cw62zbmni3p3fl82"; depends=[httr purrr rvest]; }; @@ -8044,18 +8070,17 @@ in with self; { iki_dataclim = derive2 { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; imageData = derive2 { name="imageData"; version="0.1-50"; sha256="0i56sksyxa50bhp3pimgag2bg37y1gfadky6i0xgg484wf1xw148"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; }; - imager = derive2 { name="imager"; version="0.41.1"; sha256="0ja8pi8l44llq75af4y8blb6vby43ikmy87sx83i1i327zfjzd5g"; depends=[Cairo downloader igraph jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; - imagerExtra = derive2 { name="imagerExtra"; version="1.3.0"; sha256="0ps5cgv7axx51d0114wz2sg0wgw2ihf5a9zqaw95wx5miyq1ib3r"; depends=[fftwtools imager magrittr Rcpp]; }; - imaginator = derive2 { name="imaginator"; version="0.1.1"; sha256="1xp5wsv570f1qy2fn99d8ijydmlapb6h6kinj07pilvv215dg93w"; depends=[assertthat dplyr lubridate magrittr stringi]; }; + imager = derive2 { name="imager"; version="0.41.2"; sha256="19fqgjhg04garbipx20g72h9dd6k0jj4ac48nby6km4h665vrs4v"; depends=[Cairo downloader igraph jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; + imagerExtra = derive2 { name="imagerExtra"; version="1.3.2"; sha256="1f6mxfn7am4ph9acbbx53r4bk4vsm73p7arh8rvrsic9pgma3gqf"; depends=[fftwtools imager magrittr Rcpp]; }; imagine = derive2 { name="imagine"; version="1.4.0"; sha256="1v0rds64i0f3xgg7ca14ncw4nrcc80gvjf1fbp498idq38z79qzc"; depends=[Rcpp]; }; imbalance = derive2 { name="imbalance"; version="1.0.0"; sha256="1pfhwf4844m0a8qsm852am63x18vlkbs6m1s9izrpd219616skpr"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; imfr = derive2 { name="imfr"; version="0.1.5"; sha256="1f4zynra79h42dmd9qhg67wwvs7c640f5is98bq30fdphiybihgz"; depends=[dplyr httr jsonlite]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; - iml = derive2 { name="iml"; version="0.8.1"; sha256="1cz7gk37wfzbvfh6mlz4vz0dsl5dd9fcszvcljpbwh59lylhzz94"; depends=[checkmate data_table foreach Formula ggplot2 glmnet Metrics partykit prediction R6 yaImpute]; }; + iml = derive2 { name="iml"; version="0.9.0"; sha256="15rv943q1kqilsr1h0pkm2gci1cl7775xma4swjfmbqmdc6acjq0"; depends=[checkmate data_table foreach Formula ggplot2 glmnet gridExtra Metrics partykit prediction R6 yaImpute]; }; immer = derive2 { name="immer"; version="1.1-35"; sha256="1nmf9wxxyq3p8b5kikpsr8b0v4s84zjpahg1rxvcrhc8blg26hjq"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; imp4p = derive2 { name="imp4p"; version="0.7"; sha256="1hpxx1jpwd4v19xnpjjbwcvfzvb63jfd0jq3vcq000w7am9pwwba"; depends=[Iso norm Rcpp truncnorm]; }; - impimp = derive2 { name="impimp"; version="0.3.0"; sha256="0zv4rs5c80rvwwr4gk6zlphvyf0drkfrdqpcw0p2i7kig8ynq4qx"; depends=[]; }; + impimp = derive2 { name="impimp"; version="0.3.1"; sha256="0xkxph4f1rcpkryx9v339bfbsnq3xwdj1flb4j2dgh99apj126sq"; depends=[]; }; implyr = derive2 { name="implyr"; version="0.2.4"; sha256="1xc5c8wpq1bdvfm4rkqmvykgkil9fm9n1q9ndjv701jbdr4rnisd"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; }; r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; }; @@ -8080,7 +8105,7 @@ in with self; { inca = derive2 { name="inca"; version="0.0.3"; sha256="1g9js84xa5b6jl8gp4k0c55kjazfaw5g9biwk4v6vz3vwkwayyzh"; depends=[Matrix Rcpp RcppArmadillo]; }; incadata = derive2 { name="incadata"; version="0.6.4"; sha256="1aj07zhf82wwg80jp461xapw8x9caa7daa59n4mxl8nqryrs77q0"; depends=[backports decoder dplyr rccmisc rvest sweidnumbr xml2]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; - incidence = derive2 { name="incidence"; version="1.5.2"; sha256="1vmp4qy9pahcfmk9k5s39qbg2n24xjpz0szfh2ixyfhpf946af2v"; depends=[ggplot2 ISOweek]; }; + incidence = derive2 { name="incidence"; version="1.5.4"; sha256="1a35smzwfci76bwb0qgxw4ybdcdc0chpm9k47q6fwnssrzsp7hgr"; depends=[ggplot2 ISOweek]; }; inctools = derive2 { name="inctools"; version="1.0.14"; sha256="0ial852b96x310wzvla9lahxz3mwbqqv0l0lafs0bnmyaiiwycxv"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.8"; sha256="0674hvgdq0fxab3h55iililphrr6lqp25359crvkqqgb8higbs0h"; depends=[ape numDeriv phangorn Rcpp]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.6"; sha256="0a7s37k3bg4cnzkvn833nrwi6hnfa5f6jxa8ra954v4sp55g6i5d"; depends=[permute]; }; @@ -8108,24 +8133,24 @@ in with self; { injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; inlabru = derive2 { name="inlabru"; version="2.1.9"; sha256="0jbqk8hcsfgzwr35icqwc6ch0n9v7s812hqwmn3q13l2a4lznm91"; depends=[ggplot2 Matrix rgdal rgeos sp]; }; inline = derive2 { name="inline"; version="0.3.15"; sha256="0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"; depends=[]; }; - inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; inlmisc = derive2 { name="inlmisc"; version="0.4.4"; sha256="13li6625kjadxqlyjbgkfvh8fz62yyd7rd7j5p371qfm6gragwzh"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos scales sp xtable]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.8"; sha256="1xscrqkwl15l5r1sik6mnhzl868s9yxscm74sp740n3107md92hx"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.0"; sha256="1lmvfjxgficlzxbn953wvfa1n9lys9gqprix6zbqqr4d6vkm0srj"; depends=[Rcpp]; }; insect = derive2 { name="insect"; version="1.2.0"; sha256="0lbck8jbhymzkhm1iqd2y2xg8a26yjizw7x31b1l1kqc1l0p3kmv"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; - insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; + insol = derive2 { name="insol"; version="1.2"; sha256="14ikz05375pjn9hby7kwkhcnykjilbnkdy5i8lsl7c5qdbhmqcm5"; depends=[raster rgdal]; }; inspectr = derive2 { name="inspectr"; version="1.0.0"; sha256="04rpr5ajpdx1d49y327dryxwxk27yljj4c96i9qglf02i9kmplkg"; depends=[openxlsx]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; install_load = derive2 { name="install.load"; version="1.2.1"; sha256="148q0rjal5hfcb8ilxzd1bz38mn8vxqrsfg5x4jy48psk00fk3d9"; depends=[]; }; instruments = derive2 { name="instruments"; version="0.1.0"; sha256="1m8hic2j5j9b2yaraz096176y9igf59zv4zzgkkdz4yb7jzfhprx"; depends=[]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; + insurancerating = derive2 { name="insurancerating"; version="0.4.0"; sha256="1vmiizi2dnm2xdbcbxgw9vxdg5k41b76m86dr85i4ijqvwdlkrmk"; depends=[classInt ggplot2 mgcv rpart]; }; intReg = derive2 { name="intReg"; version="0.2-8"; sha256="0cqf6lbn8aiyj5j7gg1qz80i477bfxbmxp7fjs25ish4bcdsbjja"; depends=[maxLik miscTools sets]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-12"; sha256="1h8kzinfpp2rwal11xqs9g99rmigs0jlsr5h0qh0zsill73minid"; depends=[automap gstat intamap rgdal sp spatstat spcosa]; }; - intccr = derive2 { name="intccr"; version="1.0.4"; sha256="1ivv5y863ykiksfnxa4dy9842lm83gd68hb5f6l9v5la6i3bwfin"; depends=[alabama doParallel foreach numDeriv]; }; + intccr = derive2 { name="intccr"; version="1.1.0"; sha256="000amidfnbwigw1bd3jwshvw53agr00j5bnf6qsqwb11c029mv2c"; depends=[alabama doParallel foreach numDeriv]; }; intcensROC = derive2 { name="intcensROC"; version="0.1.1"; sha256="0qkgp6iw2s772zk2533jsar64f5mqgy4874swgarnfgd4jvkwy2k"; depends=[pracma Rcpp RcppEigen]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.5"; sha256="13p1r3rccsmaqwn0mrskr86jpww72aaq8zf2a8rnbpzkfrq9ni14"; depends=[abind doParallel foreach ltm MASS mclust]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; @@ -8154,6 +8179,7 @@ in with self; { inum = derive2 { name="inum"; version="1.0-0"; sha256="1b013ak4d0iiwk5a0s7vvsl34d0hs881iq7zrvah4skb89x82cpm"; depends=[libcoin]; }; invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; + inventorize = derive2 { name="inventorize"; version="1.0.0"; sha256="07b7jihcp0s2hnhpl61wb2zpix2appi8z6kmbx0n9swjjzjmc8j7"; depends=[dplyr ggplot2 magrittr]; }; investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.0"; sha256="16mnbxq217ixfg2qfqrj97qqfpc5dj622hf80nwray6hp47lbw2s"; depends=[filenamer stringr]; }; @@ -8163,9 +8189,9 @@ in with self; { ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; - iotables = derive2 { name="iotables"; version="0.3.5"; sha256="12wak8vwd5hvm09s3cjw2pjfzb0a4pi5x85vm8shmxdx83h7m20p"; depends=[dplyr eurostat forcats lubridate magrittr plyr tidyr]; }; + iotables = derive2 { name="iotables"; version="0.4.2"; sha256="1ds6j8x965fc2j11r507ljqwcaam0zz5q2vkhq9gkl53fjfgajlk"; depends=[dplyr eurostat forcats kableExtra knitr lubridate magrittr plyr purrr readxl tibble tidyr]; }; iotools = derive2 { name="iotools"; version="0.2-5"; sha256="0rn6kvlcijnhlwajh6nmi80qlamxgz0x3pn09yp4hyfpl3zxg1fz"; depends=[]; }; - ipc = derive2 { name="ipc"; version="0.1.1"; sha256="19r48glsmv4x6dm4drgg2y7g32w7hf89rfb2jl2n4fhdjw3339fr"; depends=[R6 shiny txtq]; }; + ipc = derive2 { name="ipc"; version="0.1.2"; sha256="18w1jc6gman5rvvw49y23zw2jfmmbaiaqyc92dskv9zly84drvcs"; depends=[R6 shiny txtq]; }; ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.1"; sha256="1jx8r0a5qj4dh2ghsd8xrqy12ff85yjwqzwg5hksag9hiyjbgkrh"; depends=[survival]; }; ipdmeta = derive2 { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; ipdw = derive2 { name="ipdw"; version="0.2-7"; sha256="1g4chjzl0xcxf7mfhazy8h2dvzz73sljdbl1w79sx0pjcjagvs3l"; depends=[gdistance raster rgeos sp]; }; @@ -8173,6 +8199,7 @@ in with self; { ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; }; + ipptoolbox = derive2 { name="ipptoolbox"; version="1.2"; sha256="0scbny4crgr23qcp0vgsxhwmj5g5q5c1c4mb5mmb5njyvc34s01l"; depends=[AlgDesign copula evd kolmim triangle]; }; ipred = derive2 { name="ipred"; version="0.9-8"; sha256="01xcg3c121ndfpz9dirqxszknh4yb1p222p7f1wbwwhdrg1i27cw"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.7.2"; sha256="1wc7f6gh0qas197jf78pb8wmazhddbny3l0w47f3v6fqwa581ls0"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; ips = derive2 { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; }; @@ -8184,8 +8211,9 @@ in with self; { iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; irace = derive2 { name="irace"; version="3.1"; sha256="0r3hbsx8c40kxs62xy3pnivy6ava2xrg0h39j95zrmiqdma77sxq"; depends=[]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; - irlba = derive2 { name="irlba"; version="2.3.2"; sha256="0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz"; depends=[Matrix]; }; - irr = derive2 { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; }; + irg = derive2 { name="irg"; version="0.1.0"; sha256="0m52g70ad6iyla6p5fwdcn1m6j1yzvr9i1h5bddji235p02qiap7"; depends=[data_table RcppRoll]; }; + irlba = derive2 { name="irlba"; version="2.3.3"; sha256="1h7mzrqdjc41814cf6c93sbyl7nxwvsf3x8apl9rhmydgdlk7qkf"; depends=[Matrix]; }; + irr = derive2 { name="irr"; version="0.84.1"; sha256="1hs4ylqm51smrmgsph7z9arwkz5px2a320acar324fkjdd3yifp7"; depends=[lpSolve]; }; irrNA = derive2 { name="irrNA"; version="0.1.4"; sha256="1i7s4c285dw1s2kiq01a81cfpd2v40y26yklr06xlmqp28iwslbr"; depends=[irr]; }; irregulAR1 = derive2 { name="irregulAR1"; version="1.0.0"; sha256="0pccasqcya99j4n0qdcjjnvmigj53axji9ddxbpmrgvzsyamb8ja"; depends=[Matrix Rcpp RcppArmadillo]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; @@ -8197,10 +8225,11 @@ in with self; { isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.3.0"; sha256="1fdp4zk3pzpi5m026rlsrhyl4r5rfxy9sr8d04w2i0316rziv7kc"; depends=[data_table tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; - island = derive2 { name="island"; version="0.2.1"; sha256="0fg5nlg5iq3cl3i8xx9qq4vvizdklg6adjxmp2qrg0dyfvkllhsq"; depends=[]; }; + island = derive2 { name="island"; version="0.2.2"; sha256="1qnjyqc4vyncks9dhi2blq60zgspkwvhzbnbcnyyw3rrx2da76dd"; depends=[]; }; ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; - isni = derive2 { name="isni"; version="0.3"; sha256="0j5hy6y9br0l3xn3lx0r17hdbm1z1i49rnr2kb9z7igbq1y87pf5"; depends=[Formula matrixcalc mvtnorm nlme nnet]; }; + isni = derive2 { name="isni"; version="0.4"; sha256="0mz3l8fh2rgfxfvqc729xxh6i0pfv6z90cwcd0w2mfaz9lv53j2y"; depends=[Formula matrixcalc mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; + isoband = derive2 { name="isoband"; version="0.1.0"; sha256="1i5j9vfyaygjgcbhzd2zdlcggbbvkf3xczx3j565dp7bdq7byiyj"; depends=[Rcpp testthat]; }; isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; @@ -8223,8 +8252,8 @@ in with self; { itsadug = derive2 { name="itsadug"; version="2.3"; sha256="0wzdy82h05264n9cr84w5j98vz24was9hh1y0wdp56ws3dfbav9m"; depends=[mgcv plotfunctions]; }; itsmr = derive2 { name="itsmr"; version="1.9"; sha256="0dmijaq6q31irwrjqv5gq1yfbgggwb3m6rwbg4lx1r9l3cqays7i"; depends=[]; }; itunesr = derive2 { name="itunesr"; version="0.1.3"; sha256="1czwkrqy3jqw1x0z5zj2kvp4p11s5zdiswwhx9jfxdcsg86zhr45"; depends=[curl jsonlite lubridate xml2]; }; + iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; - ivlewbel = derive2 { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; }; ivmodel = derive2 { name="ivmodel"; version="1.7.1"; sha256="0v8alqn141s9rymk29xqmdx7gpp8ivz4525afvarxmp9sm2rqq0q"; depends=[Formula ggplot2 Matrix reshape2]; }; ivpack = derive2 { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; }; ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; }; @@ -8268,27 +8297,30 @@ in with self; { joineR = derive2 { name="joineR"; version="1.2.4"; sha256="05wr7gr3mnsfj8a1m5v1b71gh3fc4pyhj6rqapls7iwrkywbf1b6"; depends=[lattice MASS nlme statmod survival]; }; joineRML = derive2 { name="joineRML"; version="0.4.2"; sha256="06a7iicq3fngsmmi8qcz2fdzdzvym5s70s3aaqlzxnl4sj9km3g2"; depends=[cobs doParallel foreach ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival]; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.1"; sha256="0d9wwb3v43v30xjy67j366mhwixzz79bm67j01fqmcdsnmn3qpjn"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm nlme statmod survival]; }; - joint_Cox = derive2 { name="joint.Cox"; version="2.16"; sha256="1qlynvahk57ayndc23i0jr8a702z4k1darf4y5i90lza40f32jhp"; depends=[survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="3.1"; sha256="1mxi0as9fpkhphq5kfvipsy9y6ryych42wg429i7rw5jx3qk3gsa"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.3"; sha256="0pra70jcnkqkzrxz5vc6lzi637rp5w8n9wbv9ix718vnd0j3fm3n"; depends=[]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; - jointseg = derive2 { name="jointseg"; version="1.0.1"; sha256="0wa531b5shrxhnzflfjqn2wypfb565qc2c8wngysgrgyj1kjq1pl"; depends=[acnr DNAcopy matrixStats]; }; - jomo = derive2 { name="jomo"; version="2.6-5"; sha256="109q5m69clrvvialxdxznd0wdb54ajhx84nj8slx8bf909a427mj"; depends=[lme4 MASS ordinal survival]; }; - jose = derive2 { name="jose"; version="0.2"; sha256="0vgmr5kmps6yk10bbzrxz2d3y7jk0w1rxpm9gx510kpnqbj325xz"; depends=[jsonlite openssl]; }; + jointseg = derive2 { name="jointseg"; version="1.0.2"; sha256="0zilkxk30w3l9mwikmsgvpy5misjggs98c3bjrjy1pfc4b0is943"; depends=[acnr DNAcopy matrixStats]; }; + jomo = derive2 { name="jomo"; version="2.6-7"; sha256="0lyvi32aikkvwdj0y2hc13kmmi0cw1icg8z9lcw10l8326sxm0vf"; depends=[lme4 MASS ordinal survival]; }; + jose = derive2 { name="jose"; version="1.0"; sha256="1yna3x4hi0vn23dqi605nn1y313brwh2wcv527bm3mdbscgsi2jf"; depends=[jsonlite openssl]; }; jpeg = derive2 { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; }; jpmesh = derive2 { name="jpmesh"; version="1.1.1"; sha256="0smfv7wh0441aqx0c0km0kr54lsvqixn2chqvqn5sd3758k5id95"; depends=[leaflet magrittr miniUI purrr rlang sf shiny tibble units]; }; jpndistrict = derive2 { name="jpndistrict"; version="0.3.2"; sha256="0n935zwxjjnl1w0xd790gm22pdm8ng48x79iazfkjzj8dpwymdsg"; depends=[dplyr jpmesh leaflet magrittr miniUI purrr rlang sf shiny tibble tidyr]; }; jqr = derive2 { name="jqr"; version="1.1.0"; sha256="00x5a61bsn2ywzc2haz19f6h0sqhlx7z3k1n9y0729dwm4id89ms"; depends=[lazyeval magrittr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; + jrt = derive2 { name="jrt"; version="1.0.0"; sha256="0jy3a157bp5q8mmg2pj97idwv47mvpczignwx8jjb4nx30gs69wh"; depends=[directlabels dplyr ggplot2 ggsci irr mirt psych tidyr]; }; jrvFinance = derive2 { name="jrvFinance"; version="1.4.0"; sha256="09gr8w3y0cjlwjhr72ml05y22m868hnvxwa3mwxdcvfb7nb1dmxz"; depends=[]; }; js = derive2 { name="js"; version="1.1"; sha256="1xsdr14k4djcd1nqybvfzhviics4igsj8yz3r0j2nqhin2wjynlf"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.0.1"; sha256="0n754illyw29bprll676k9qm5vk5h8qss6gb8lls57kdzj51x2jz"; depends=[data_table htmlwidgets jsonlite]; }; - jsonify = derive2 { name="jsonify"; version="0.1.2"; sha256="1vzdrb50cv1028a243rv0j55zwxps625rxv2km6nf11kc47l5rk6"; depends=[rapidjsonr Rcpp]; }; - jsonld = derive2 { name="jsonld"; version="2.0"; sha256="0mplsx2fq7pvxli1rd851cqhkaxk3y93aa46x57yf4z5rgjy34vm"; depends=[curl jsonlite V8]; }; + jskm = derive2 { name="jskm"; version="0.2.7"; sha256="1qqci8ys3nrikpzdna8smkff7k9mpdla77q6a1p6syisbs7p2jqg"; depends=[ggplot2 gridExtra plyr scales survey survival]; }; + jsonify = derive2 { name="jsonify"; version="0.2.0"; sha256="0jz0z4pnzc07hgy7cl03n5jfry6fxfddv9kj3v7faw4f349kn9ic"; depends=[BH rapidjsonr Rcpp]; }; + jsonld = derive2 { name="jsonld"; version="2.1"; sha256="0lp0lp9nbk31dia2nq6xba29ymak9h5wl4zbq4pdqw6qm9iwz6ww"; depends=[curl jsonlite V8]; }; jsonlite = derive2 { name="jsonlite"; version="1.6"; sha256="0lyvhnr6n57h3a89bvipii7x17nvfaycm9j5j50bfrlr48jv9ic8"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; jsr223 = derive2 { name="jsr223"; version="0.3.3"; sha256="0i00nbsj6b4mx9pgp5rana1kj57hi4lz3lsiniv7baz5avmhp65n"; depends=[curl jdx R6 rJava]; }; + jstable = derive2 { name="jstable"; version="0.7.7"; sha256="0nxgcd6zgragzvw7jkpl7kr1j0zmmyis57j2kq03kcq0a6js2a2d"; depends=[coxme data_table DT epiDisplay geepack labelled lme4 survey survival tableone]; }; jstor = derive2 { name="jstor"; version="0.3.6"; sha256="00sd4mq21al8f8ixgy8f65xbgp90if1jpp7mcm50jrbajdwwflmk"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5.1"; sha256="06cgsncgrqslxcc7s0lb3zwa85bhzkmjzz3f04716xpzwa186vxq"; depends=[Rcpp]; }; jtools = derive2 { name="jtools"; version="1.1.1"; sha256="0c7ygllgq5vyb4w188l44f5q8bn1jn2kw3yvc1f1zi0ni1ngsf7g"; depends=[cli crayon ggplot2 magrittr]; }; @@ -8301,10 +8333,9 @@ in with self; { jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; jwutil = derive2 { name="jwutil"; version="1.2.1"; sha256="1n9q2p167cmp134p8qpknfg4avi4nzxqmazyr1gs63sk5x51yk48"; depends=[Rcpp testthat]; }; kSamples = derive2 { name="kSamples"; version="1.2-8"; sha256="15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr"; depends=[SuppDists]; }; - kableExtra = derive2 { name="kableExtra"; version="0.9.0"; sha256="07232lg3nzg7vqpn61v3knmsy943gap92bqhdxm28k06vj9aqgbf"; depends=[htmltools knitr magrittr readr rmarkdown rstudioapi rvest scales stringr viridisLite xml2]; }; + kableExtra = derive2 { name="kableExtra"; version="1.0.1"; sha256="0vsywd0hab16gfxv2x8gwnmfm0s46ap84rfcy2r939w3a4by3lwm"; depends=[digest glue htmltools knitr magrittr readr rmarkdown rstudioapi rvest scales stringr viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; kamila = derive2 { name="kamila"; version="0.1.1.2"; sha256="0mcray8byifjddsmwzmcpmw3zpm1y8q3nfrgpgacb36rwprqkj6z"; depends=[abind gtools KernSmooth mclust plyr Rcpp]; }; - kangar00 = derive2 { name="kangar00"; version="1.1"; sha256="1rm3mjghgfq8fliha6flqvcb6m4xag1697c0q5smg515453l0s0p"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; kantorovich = derive2 { name="kantorovich"; version="2.0.0"; sha256="0y965nkhgk0z2q2j3sycfg76aqqi3ry8avg0bz9xggpd60bhh5vd"; depends=[gmp lpSolve rcdd Rglpk]; }; kaphom = derive2 { name="kaphom"; version="0.2"; sha256="09rxvg37nbjs78l9yh86a2kd428dnfws2wz82mx9frys3ys6zhfl"; depends=[]; }; kappaSize = derive2 { name="kappaSize"; version="1.2"; sha256="0lrcyj85zcl73m6bhbzl6rkprrfpfwmm4amyjkg1xsasy5zlwk67"; depends=[]; }; @@ -8399,7 +8430,7 @@ in with self; { kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; komadown = derive2 { name="komadown"; version="0.2.0"; sha256="0mw1bcrg10yy1y844lpik70979420h0nsar48v5p3qk783pymbdp"; depends=[bookdown rmarkdown]; }; komaletter = derive2 { name="komaletter"; version="0.3.0"; sha256="09yvb8ijm1s5d89mrl8j56n8x8q1lq2siprw8191ys3jidmk6ha7"; depends=[rmarkdown]; }; - konfound = derive2 { name="konfound"; version="0.1.0"; sha256="1w85gsms061d5hik3bc7x5gc7cp6c9h8l8q8q60isj1r0n60a81s"; depends=[broom dplyr ggplot2 margins pbkrtest purrr rlang tidyr]; }; + konfound = derive2 { name="konfound"; version="0.1.1"; sha256="122dsg9lrr3mv9kdr0pf5q1259b24cd5mffdj7drhc31ynh02gia"; depends=[broom dplyr ggplot2 margins pbkrtest purrr rlang tidyr]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; kpeaks = derive2 { name="kpeaks"; version="0.1.0"; sha256="1qxpncwyshv35h1190py6a69mljabfcjjs7v17a2rb5asahy3rk8"; depends=[]; }; kpmt = derive2 { name="kpmt"; version="0.1.0"; sha256="15d26khc0v3kc1c7l1avqp48pfqmc6xj32029mv7myivr41ashk3"; depends=[matrixStats]; }; @@ -8419,7 +8450,7 @@ in with self; { ktspair = derive2 { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; }; kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; - kutils = derive2 { name="kutils"; version="1.45"; sha256="0qx40d5nk8q0kv09l73bcn7dbch89b9zi8yp75v39vcy4qxdnc2b"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; }; + kutils = derive2 { name="kutils"; version="1.60"; sha256="1sf9007zc59632r6xig8kxfgf9nv9xc3ld0z8v2yprc6gffjr42d"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.3"; sha256="0dhdvka7sdh7qcq5cz5xsv8dbxr1lr4n7wf033smsz4nvwgjixr3"; depends=[Rcpp]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[hydroGOF lattice]; }; kyotil = derive2 { name="kyotil"; version="2018.10-17"; sha256="12rrr7ynjwhcskjkfkv11q5xpdfn9j27vmnsd0r0vc2w2b25217k"; depends=[]; }; @@ -8436,12 +8467,12 @@ in with self; { labelVector = derive2 { name="labelVector"; version="0.1.0"; sha256="08ydgmvks09hbln10zmqxv9hxgiha0n9w5cgych9bnkqdca74gah"; depends=[]; }; labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; }; - labelled = derive2 { name="labelled"; version="2.0.1"; sha256="01y4h92h89chymhihm409rnpibfl9mcvsjsz2d242zyqlg8m38h5"; depends=[dplyr haven]; }; + labelled = derive2 { name="labelled"; version="2.0.2"; sha256="0fza98air3npnxz857z6svs5c9qhz5lk84vvpnr5775zk3c2la8d"; depends=[dplyr haven]; }; labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; labstatR = derive2 { name="labstatR"; version="1.0.9"; sha256="1ysk23dwan1lsfwnf9v86yqyzc8wsgzmy18ycz34s4d9biq6y1zd"; depends=[]; }; labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; lacm = derive2 { name="lacm"; version="0.0.3"; sha256="0qhvffiw2bcpnv6l4y4h12ss59yc2j0hwsg2nr4a7w4nh6yk9fwc"; depends=[numDeriv statmod]; }; - laeken = derive2 { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"; depends=[boot MASS]; }; + laeken = derive2 { name="laeken"; version="0.5.0"; sha256="1g9r3y7b0gl91hijk9awa8rjk97mqpkxinzq2cgmx0m38ng9ylpa"; depends=[boot MASS]; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; lagged = derive2 { name="lagged"; version="0.2-0"; sha256="053wv4z1859v4j00x6l707v6w5zdyk3r1a6naxs601607yn27n5h"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-0"; sha256="0nrrr2n2q228d1c7qrhcnczmr374i56p7kr868yl19g8ddd3gx3w"; depends=[Formula partykit spdep]; }; @@ -8456,10 +8487,10 @@ in with self; { landsat = derive2 { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapemetrics = derive2 { name="landscapemetrics"; version="0.3"; sha256="025dk1k60jzvw2naar2h64vj92vn32lwzgdifzy16z5xf3b6qx2q"; depends=[cli crayon dplyr ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="0.3.1"; sha256="12rip0idicy3k3dsnsas186yigpk7hc3j78rzij55g6mk8qaq103"; depends=[cli crayon dplyr ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.4.0"; sha256="191fgb0in2vz8drfm59g5cddka1yxi4l37zpiprj9ay1hdg8rc0s"; depends=[checkmate dplyr extrafont ggplot2 magrittr purrr raster rasterVis tibble tidyr viridis]; }; - landsepi = derive2 { name="landsepi"; version="0.0.5"; sha256="13f3jzggkyd3hnzy3ydg6dhfgfjbs04nbpjxqy5b6dwikk9w9hvi"; depends=[fields maptools MASS Matrix Rcpp rgdal rgeos sf sp splancs]; }; - languageR = derive2 { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; + landsepi = derive2 { name="landsepi"; version="0.0.7"; sha256="00ckjjyq33y362xhwjic8rwz06ml3s5l8wxxf7cgh0xkzv5hwcnr"; depends=[fields maptools MASS Matrix Rcpp rgdal rgeos sf sp splancs]; }; + languageR = derive2 { name="languageR"; version="1.5.0"; sha256="1iipnr2b4hd2w718prbh075j56m5xnchlcb2vg26m16qpydp6afn"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.3"; sha256="1sh3k8xw88pm93wmpy1qi44i8pv5b5g6ajzas36bdi1bqm8cqzax"; depends=[attempt curl httr rjson]; }; languageserver = derive2 { name="languageserver"; version="0.2.5"; sha256="07j0s5s689szasvh4h5hn2250yfly35gjv88g7ggzy71i9vw0cdv"; depends=[callr collections desc jsonlite lintr R6 repr stringr styler]; }; lans2r = derive2 { name="lans2r"; version="1.0.5"; sha256="1m3hz85gl9m4vafdy7mj3z560d11mdwlwvnzy8n7d1cjqryn7a2b"; depends=[dplyr ggplot2 lazyeval R_matlab reshape2 tidyr]; }; @@ -8486,7 +8517,7 @@ in with self; { lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.5.1"; sha256="01bx1snd3zhc8dmq0f407qhw2d00f6d38qpr791qc1mq5kr3d8qj"; depends=[DiagrammeR lavaan stringr]; }; - lawn = derive2 { name="lawn"; version="0.4.2"; sha256="17nj88n5xzhjkwm0hi8g9h5a3nclvkq3k1pv3690ph14g4l9lgcj"; depends=[jsonlite magrittr V8]; }; + lawn = derive2 { name="lawn"; version="0.5.0"; sha256="0yvlps6g9ya383615y7x624hnwb6qfs6i5yg4cchp6lkvz2xdd5y"; depends=[jsonlite magrittr V8]; }; lawstat = derive2 { name="lawstat"; version="3.2"; sha256="03ppzyx3x6vx1n2k5l8gl9j2q2mnqa1im5smxnrlncan7yzjy7sf"; depends=[Kendall mvtnorm VGAM]; }; lazy = derive2 { name="lazy"; version="1.2-16"; sha256="1psh3sng1pm23pjwy7iszb21ys7d29ry34ymvpgxj6zdhywwi5n7"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; @@ -8505,6 +8536,7 @@ in with self; { lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; lcmm = derive2 { name="lcmm"; version="1.7.9"; sha256="15x8i7cvifbrb64cqjng0hvk6ajnla0yakj4pfd8d4s20nzivij4"; depends=[survival]; }; lcopula = derive2 { name="lcopula"; version="1.0"; sha256="07a9k5fp03s6jnjawg11j4458xrsrrqxv6kf3cs58ymv0j2s1qyd"; depends=[copula pcaPP Rcpp]; }; + lcpm = derive2 { name="lcpm"; version="0.1.0"; sha256="1miyq9pxwbn6l9099dbb5i4fnrjrnyj9yq5j6lv76bv7ih1kxp4a"; depends=[Matrix numDeriv plyr]; }; lctools = derive2 { name="lctools"; version="0.2-6"; sha256="06hhz0sjdrci1li03f09wij1qrl74sla2938fbkx72ffy0mdg310"; depends=[MASS pscl reshape weights]; }; lcyanalysis = derive2 { name="lcyanalysis"; version="1.0.3"; sha256="0nkqrm8r5iyvw2gbixvi0bnqx2wafg67cqz9mn99halzk9hpynl9"; depends=[quantmod TTR xts zoo]; }; lda = derive2 { name="lda"; version="1.4.2"; sha256="03r4h5kgr8mfy44p66mfj5bp4k00g8zh4a1mhn46jw14pkhs21jn"; depends=[]; }; @@ -8535,13 +8567,13 @@ in with self; { learnr = derive2 { name="learnr"; version="0.9.2.1"; sha256="0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5"; depends=[evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="0.0.2"; sha256="1k17dk8ahn1ifwid1hhx0k7fpgc62zg82y66bbf6nhd4dgdbbv2p"; depends=[]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; - ledger = derive2 { name="ledger"; version="1.0.1"; sha256="0f97wxzkhssf0z5kslsx530b4a27fdiiakiylqbfam7xzlqz34yj"; depends=[dplyr rio rlang tidyr]; }; + ledger = derive2 { name="ledger"; version="2.0.0"; sha256="18nf555wy40xgrvbrinxl9z5063x0daibrli9616aicrydrl0rhi"; depends=[dplyr rio rlang stringr tibble tidyr tidyselect]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemon = derive2 { name="lemon"; version="0.4.2"; sha256="1i828vix6r0a5sa0nn5klnf5phl80ckwq9azz093qzz1c6lhcvm2"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; + lemon = derive2 { name="lemon"; version="0.4.3"; sha256="0wsn5bfg10wq4dnrgpyraz2bzx9p19c7hf1pwj3h4zmpqfgsdbpw"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="3.7.9"; sha256="168myzjrk2iclx0r76ikrar3n6qvchi5ap9sk5ph7alw5ck4q3ca"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png randomcoloR robustbase sas7bdat triangle viridisLite wesanderson]; }; + lessR = derive2 { name="lessR"; version="3.8.1"; sha256="096i37ccgi0lq90w65rbf3cnzgh5cxh76kb1nvcqchvpmh41iksm"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png randomcoloR robustbase sas7bdat triangle viridisLite wesanderson]; }; lest = derive2 { name="lest"; version="1.0.0"; sha256="06ng0dpj37bhhwc34ilpks2ics97m9yjdpj4q993h3s2fn8kdgxw"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="3.1"; sha256="0wyqqq7w21k87md3pwsz3kdaws345fdhh2xgavwiiywalg0gvxxx"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -8560,7 +8592,7 @@ in with self; { lgcp = derive2 { name="lgcp"; version="1.5"; sha256="1n1f87qg0y9r22p3q1qjnfrs7xarvsidgqgg6v2bsb55viwy11g3"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; - lhs = derive2 { name="lhs"; version="0.16"; sha256="09clh386i5iig8x36lx02p01zqq0kb9hzvw5slv1ggmjnp1rklcw"; depends=[]; }; + lhs = derive2 { name="lhs"; version="1.0.1"; sha256="0lzaqr7xi3ckln5nglv5xf5njm359slpz1jc6s02hpsqdw6armd4"; depends=[Rcpp]; }; liayson = derive2 { name="liayson"; version="1.0.1"; sha256="1l3zxpjis8k8ks59wsx1lvg4pmsy69094jh0h2zqvi4nnjphfqqm"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; libamtrack = derive2 { name="libamtrack"; version="0.6.3"; sha256="0pdwrz19q1yls0rgr4579f31j86awizx3j31h7vdh6y70ngpmb82"; depends=[]; }; libcoin = derive2 { name="libcoin"; version="1.0-2"; sha256="1s1hirklh8w9gwnhrlgjmxsp517ylsyzj2bwal4fzzz2lxf8ffvg"; depends=[mvtnorm]; }; @@ -8568,14 +8600,14 @@ in with self; { librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.6.4"; sha256="1hdnqgnvzm5116gphxa55k2bc3ksr607px2s2yg1ilmmxdghdccw"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; - lidR = derive2 { name="lidR"; version="2.0.0"; sha256="15x63xiawyvk26g93907dka6icdaxbh3gwbj66cww5fqqawp6fzk"; depends=[BH data_table future gdalUtils geometry glue gstat imager lazyeval raster Rcpp RCSF rgdal rgeos rgl rlas sf sp]; }; + lidR = derive2 { name="lidR"; version="2.0.1"; sha256="0k5ykmjbxz8ls6wrv7gi6rald2lqli3yg743v0i4ffhi207m4wqr"; depends=[BH data_table future gdalUtils geometry glue gstat imager lazyeval raster Rcpp RCSF rgdal rgeos rgl rlas sf sp]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.5"; sha256="18dlp6bm9hsr99y85fxdbapn8s1daqsynpiqf2cfhyffqiwll97f"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; liftLRD = derive2 { name="liftLRD"; version="1.0-8"; sha256="1m24f4mc70l808cpkcdm91hzb5b3bkzibvgyfi9zs6cs8apcvmy3"; depends=[adlift nlt]; }; liftr = derive2 { name="liftr"; version="0.9"; sha256="1yg9ql6rklrdcd2qds223naryg3rbdi1mbqrlf5jc3cwzhllcsa9"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; - liger = derive2 { name="liger"; version="0.1"; sha256="0q26qdy7kgqj70ka2gcpji8ni2w8kxnznhp4ig2251xllw9j7dz4"; depends=[matrixStats Rcpp RcppArmadillo]; }; + liger = derive2 { name="liger"; version="1.0"; sha256="0vn49p8ldb7ss35by04qh7r1arn5w8gci1rqbyfqw8ignwjrdc7s"; depends=[matrixStats Rcpp RcppArmadillo]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; @@ -8609,7 +8641,7 @@ in with self; { lintools = derive2 { name="lintools"; version="0.1.2"; sha256="18layj6a202p0sy9rs022fp0a6fwvixwwmwlyzn7h9kh4y9gvxjz"; depends=[]; }; lintr = derive2 { name="lintr"; version="1.0.3"; sha256="0vlsgq13g2ddv3wqcxaaf7yki9yjj3j1agkh91vqlvbi90i6s8mx"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; - liquidSVM = derive2 { name="liquidSVM"; version="1.2.1"; sha256="0nw8n4qg2jijbnlza15ifzqsl4pj7gjzi4nd71zp7h0aw5mnp80x"; depends=[]; }; + liquidSVM = derive2 { name="liquidSVM"; version="1.2.2"; sha256="12k8qgk8nmsai3q5hcm4xbyh0yv08mwpb1biyckwwb4dhzjlbxcn"; depends=[]; }; lira = derive2 { name="lira"; version="2.0.1"; sha256="10bjmapnlw5z5cnbdpkwisvjkmk7zi9xqrvgmb5psj317zcxfc2p"; depends=[coda rjags]; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; lisrelToR = derive2 { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; @@ -8621,7 +8653,7 @@ in with self; { listless = derive2 { name="listless"; version="0.0-2"; sha256="1gr6l4vih7j28kg2mj1xj2yhlpwjc4p894vsxri25vq0r9kgcdym"; depends=[magrittr tidyr]; }; listviewer = derive2 { name="listviewer"; version="2.1.0"; sha256="09jkrrq4zyzgi66vkpm5n7isxpbckx5hjk39nik766hzarj5i7rs"; depends=[htmltools htmlwidgets shiny]; }; liteq = derive2 { name="liteq"; version="1.0.1"; sha256="080ljgb2qsfmyppnlp9acmskgq94pmdbbgbhygqkxvzda5bbas8h"; depends=[assertthat DBI rappdirs RSQLite]; }; - littler = derive2 { name="littler"; version="0.3.5"; sha256="0zv6yr23swiw7w21qdw26jrw882wh0si7wz73fwl8d554rbhqinw"; depends=[]; }; + littler = derive2 { name="littler"; version="0.3.6"; sha256="0zhpqg3fcsd67hh5nzyba82bd8ymz90dsnv5xvqcyag50wlv3rl3"; depends=[]; }; liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.9"; sha256="1xs0iwxw1fp6sqxf9f3r0i70s0fjraslqq4mzlv852wv2h3g0hrn"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower lubridate MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; @@ -8636,7 +8668,7 @@ in with self; { lmQCM = derive2 { name="lmQCM"; version="0.1.2"; sha256="0flir861pnvg6kkkccv7f162gd9ml4mks7pjs0041jrs7bijbh68"; depends=[Biobase genefilter nnet]; }; lmSubsets = derive2 { name="lmSubsets"; version="0.3"; sha256="1d78gbmxybxb98lapy5m7nyxc7slyxlj50xdh6a4nyckixmf9plp"; depends=[]; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; - lme4 = derive2 { name="lme4"; version="1.1-19"; sha256="0j8xhkkcdv45ilab960s9jrcjk6jbzvd7w7myswv5fmalrpq52pf"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-20"; sha256="0b3b043s3xxs88q5w6l7ph6ih6jbnhfrp4vaz45sbihfs9f5zx24"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; @@ -8659,13 +8691,14 @@ in with self; { lmomPi = derive2 { name="lmomPi"; version="0.5.0"; sha256="07ggfzgvhc6kkqs8bbs6z01rbhgb0ki2y4li6r0nkiby1wcpx0py"; depends=[lmom stringr]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.1"; sha256="1gq5sjdywz1jbsshrh350zad7iifml2yj8an5xa63ghxiskrxscx"; depends=[lmom]; }; lmomco = derive2 { name="lmomco"; version="2.3.2"; sha256="1gqwn5yjd3zcwd5nysayf88vjhj2j1qxfgqcw63q7f2ih0xk1lqp"; depends=[goftest Lmoments MASS]; }; - lmreg = derive2 { name="lmreg"; version="1.0"; sha256="0ndwggjkqmfjcd5ggc3vxv7xbvvcxlnxy95ynhbwg4rigyavhww5"; depends=[MASS]; }; + lmreg = derive2 { name="lmreg"; version="1.1"; sha256="0q4vpjjzcpxxqbq7m4k49kl6whj4mvly5fxf0w5hdnbq1nryabp8"; depends=[MASS]; }; lmridge = derive2 { name="lmridge"; version="1.2"; sha256="091rznzh77bmsv7sw9xmsq6s9pnljyq7qyl74kgcxss718134jr3"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-36"; sha256="0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy"; depends=[zoo]; }; lmvar = derive2 { name="lmvar"; version="1.5.0"; sha256="068ib0abpvds0ibb0d6m71svv7d3l0is4kdin1wzsn633kk3zcfy"; depends=[Matrix matrixcalc maxLik]; }; lmviz = derive2 { name="lmviz"; version="0.1.1"; sha256="0wgq93pr54pc4vxzqlhc1i67zf4lrn8yzpvlqsv8byh2qb0dd4sv"; depends=[lmtest mgcv shiny shinyjs]; }; loa = derive2 { name="loa"; version="0.2.44.2"; sha256="16yrkl8l4wa4i3iizncm58l75l46acfr2lf4vn53crcci9xra333"; depends=[lattice MASS mgcv plyr png RColorBrewer RgoogleMaps]; }; lobstr = derive2 { name="lobstr"; version="1.0.1"; sha256="1yq4a568aj1psf7i20c5g1fwas486gd50ypjpc76ibyvff7jiyr5"; depends=[crayon Rcpp rlang]; }; + localICE = derive2 { name="localICE"; version="0.1.0"; sha256="0pch4mdn0bj3rlqsai3lqrkv6pw04238n9qvlwzwcwii3wyqhkgs"; depends=[checkmate ggplot2]; }; localIV = derive2 { name="localIV"; version="0.1.0"; sha256="0q2vjiwj301g0lqaafpk6i1cxdwgaanz9ckwj2zkzk4h3gx2afw3"; depends=[KernSmooth mgcv sampleSelection]; }; localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; @@ -8686,7 +8719,7 @@ in with self; { logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; }; logcondiscr = derive2 { name="logcondiscr"; version="1.0.6"; sha256="08wwxsrpflwbzgs6vb3r0f52hscxz1f4q0xabr1yqns06gir1kxd"; depends=[cobs Matrix mvtnorm]; }; logger = derive2 { name="logger"; version="0.1"; sha256="00gfy2i58qn5na8cxxrkm1pvsw85xx2gdk0y6dzxhcjfx3wyplaw"; depends=[]; }; - logging = derive2 { name="logging"; version="0.8-104"; sha256="1grx44yhn8lm71ksyq9z369ylawngm69bv7dg1c660378c5b0iix"; depends=[]; }; + logging = derive2 { name="logging"; version="0.9-106"; sha256="1j6m7fag33590c1p4ly8vd6q23ss0igw1wk6h30yclr34lvsadbs"; depends=[]; }; loggit = derive2 { name="loggit"; version="1.1.1"; sha256="1w9a3mbf863dk6lnd95mwr15rxjpv1rra1z45jnqk8w56g1s7q4d"; depends=[dplyr jsonlite]; }; loggle = derive2 { name="loggle"; version="1.0"; sha256="0r1r8m2ckva17vbvwkzhq1lx6bap0kbfj9hxyk46adslcf3xxrxp"; depends=[doParallel foreach glasso igraph Matrix sm]; }; logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; @@ -8700,10 +8733,10 @@ in with self; { loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.0"; sha256="05asjafpairgvix8gs9n5bwiwxv857wzbmni67clm2dzkh7vsn22"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.4"; sha256="1jyi8j9s5rd0arg750hddkpv92a9pzhifxjivnl8v5j9mz6v7z6r"; depends=[Matrix]; }; - logspline = derive2 { name="logspline"; version="2.1.11"; sha256="0747xl0p6kigc936kyqxqgmwxsh01lb9913w7wq0q05766pnw7kq"; depends=[]; }; + logspline = derive2 { name="logspline"; version="2.1.12"; sha256="1y4q2v1chc70i04idj8a67lhndsipq9ymjsa3ijrxng8a6qx7ljk"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.0"; sha256="0ygxm5qym1s64pa8a04jf44y786svrkhscda2x781jx8gpil753v"; depends=[abind ggplot2 irlba MASS pls]; }; - lolog = derive2 { name="lolog"; version="1.1"; sha256="03bhmzd7qw6hq82lymy183x4q2lzm5f9ish2fy7dqif1iqvkq3fq"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; + lolog = derive2 { name="lolog"; version="1.2"; sha256="1vd80ngq4558ahan1vhsql0wc578imm13fgrrgnzlrd91xncnnjf"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; lomb = derive2 { name="lomb"; version="1.1"; sha256="08gzmrxl149p4wy8q3vs9impxqdf429q7lrg8j7g2r0k2yzm4rp7"; depends=[]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; @@ -8711,6 +8744,7 @@ in with self; { longclust = derive2 { name="longclust"; version="1.2.2"; sha256="1yxxz8apbl1vaqzrsiq7r5ss87j2li595bkvibpkwslgwzv47dcs"; depends=[]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; }; + longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.1.1.1"; sha256="06yzwah04hm8psy7rk740l4gqvi1amicsp25hxhv3gyppw3p789l"; depends=[dplyr ggplot2 rlang scales survival tidyr zoo]; }; longmemo = derive2 { name="longmemo"; version="1.1-1"; sha256="0myn2xpg0mw3x5zma0y1dza2jg3x9zj9z8xv2z8l2q9pm228xn0d"; depends=[]; }; longpower = derive2 { name="longpower"; version="1.0-16.1"; sha256="0ywzx9rsh53mqlzxm0dzmwpxdyj187pxhjwd7cf463l4vm49qgmy"; depends=[lme4 nlme]; }; longurl = derive2 { name="longurl"; version="0.3.0"; sha256="0ysa70zlkk3ybddj3yd3vbhjnkjbrisiz5a2hgbjx10p33m1r3am"; depends=[dplyr httr purrr]; }; @@ -8722,13 +8756,13 @@ in with self; { loose_rock = derive2 { name="loose.rock"; version="1.0.9"; sha256="03713ac7farwgjidnx46j6mzm6if10b33lrpzban9lis713s8qqm"; depends=[biomaRt digest dplyr futile_options ggfortify ggplot2 MASS reshape2 rlang]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; - lorentz = derive2 { name="lorentz"; version="1.0-0"; sha256="0irnmzsvp4jdych2j68y68yvly1w3c0fxkply7lqhw2h1hbxhlgx"; depends=[emulator magrittr]; }; + lorentz = derive2 { name="lorentz"; version="1.0-1"; sha256="0iq98vjs0qkhqlf7asijy8pb63jadb9l94hg0jj8nahc7z0c0hv9"; depends=[emulator magrittr tensor]; }; lori = derive2 { name="lori"; version="1.0.0"; sha256="190ij4swfl9pw8cd7ky3jzyp2cirjfjnnm6hv2mpvjw7m0w0lyfv"; depends=[ade4 FactoMineR glmnet gridExtra lars lattice NLRoot pdist psych svd]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.13"; sha256="13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17"; sha256="1gfxnjkhhyybhyg29qdrdqzwq569b6pgwjgacmw3q7aldc724cyz"; depends=[]; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; - lpc = derive2 { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; }; + lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; lpdensity = derive2 { name="lpdensity"; version="0.2.2"; sha256="1fv1biyc12zg0wfqcr5kp761fy6n6879knvlxr2zjp6rjssi3h6d"; depends=[ggplot2]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; lpirfs = derive2 { name="lpirfs"; version="0.1.4"; sha256="0h57pp1lag5bkqkzq9jd4g0ir3pn2vmnqr1nc4jh00bv6gbqrhrr"; depends=[doParallel dplyr foreach ggplot2 lmtest plm Rcpp RcppArmadillo sandwich]; }; @@ -8757,21 +8791,20 @@ in with self; { lspls = derive2 { name="lspls"; version="0.2-2"; sha256="1cmffkyc881659l9m1miwhr3jfpwb0xb9n5chg317vcm8l9r4wcn"; depends=[pls]; }; lsplsGlm = derive2 { name="lsplsGlm"; version="1.0"; sha256="1qh68r033fwq1hc19h2srl1k6znvvvrcp38ghxadsksjfxllvniy"; depends=[]; }; lsr = derive2 { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; - lss = derive2 { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; ltable = derive2 { name="ltable"; version="1.0"; sha256="1sx6bknbfkays899yq7wqpvc7izz757smaw9g9i7wii7d7a75plr"; depends=[]; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive2 { name="ltm"; version="1.1-1"; sha256="1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7"; depends=[MASS msm polycor]; }; ltmle = derive2 { name="ltmle"; version="1.1-0"; sha256="1mlsggl0vdnlgf8j0bjmh4zrfdpmkfi9jhar35npxz9r0yfjmw8f"; depends=[Matrix matrixStats speedglm]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; + ltsk = derive2 { name="ltsk"; version="1.0.7"; sha256="1swv5xk5mqmi20wn85a5978gdblmwbx22y3hzadivrk7q130r9w6"; depends=[fields gstat sp]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; }; lubridate = derive2 { name="lubridate"; version="1.7.4"; sha256="14a823il77w3wmmnzr89vwrqp50y56dh5raycnaw6c8nv5xsh32i"; depends=[Rcpp stringr]; }; - luca = derive2 { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; }; - lucid = derive2 { name="lucid"; version="1.6"; sha256="0acsnvxvr9qr6ib48dg6byqvfdw5rl65j72nvv3pvvisqj22b0pg"; depends=[nlme]; }; + lucid = derive2 { name="lucid"; version="1.7"; sha256="0hrb8qlm8g4h1ziwxq7m53pf7g8fxhcb2xryavm6rniqpcx8yb7g"; depends=[nlme]; }; lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; }; ludic = derive2 { name="ludic"; version="0.1.6"; sha256="0srs3bx9cw89mlpg8b8vcmz2gnsv729j3n23pnnxgbh2w7xf705b"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; lue = derive2 { name="lue"; version="0.2.1"; sha256="0is5rd1dz91bzphmfbbzi3s6rgc5g9qza2r26k70xs67dgn0qbjq"; depends=[ncdf4 raster]; }; - lulcc = derive2 { name="lulcc"; version="1.0.2"; sha256="1vlaidyqgx5vnf8w2y1a1jmmq7z4195avnv1mryhh414r5r1kpy0"; depends=[lattice raster rasterVis ROCR]; }; + lulcc = derive2 { name="lulcc"; version="1.0.3"; sha256="12m8kqcavrxx1h091jdgd80z0mmh78gxaild48v8psib0hpd9v3a"; depends=[lattice raster rasterVis ROCR]; }; lumberjack = derive2 { name="lumberjack"; version="0.3.0"; sha256="00br82x9n6x96ksqqgahc1ydffl9cv8lysm57pk2mxm0fzbcph2p"; depends=[R6]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; lutz = derive2 { name="lutz"; version="0.2.0"; sha256="1ypi61b0l5pig2lvvq9lmqkqcsxhnf154lxridp0amv5rcmf2fxy"; depends=[V8]; }; @@ -8794,10 +8827,7 @@ in with self; { mHG = derive2 { name="mHG"; version="1.1"; sha256="1rz5ncrvvv9h9grls15apa63v2nh9j87fmp4mwjjil37jx6a5zki"; depends=[]; }; mMPA = derive2 { name="mMPA"; version="1.2.0"; sha256="0g4zjknz52fpk7f436j95aw93aa8q2jwcrb1pqkm294kr276nnd9"; depends=[]; }; mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; }; - mRMRe = derive2 { name="mRMRe"; version="2.0.7"; sha256="1njapjphy4b8nvrsnzrf2nbfp7mjizb7wlxgx1igfqncfhbskqfn"; depends=[igraph survival]; }; - mRchmadness = derive2 { name="mRchmadness"; version="1.0.0"; sha256="0f6cb3d5dhp6b0dd0fshplp75jjbhx3v9r53pa8gmcfd10hvbqba"; depends=[dplyr glmnet Matrix rvest shiny xml2]; }; mRm = derive2 { name="mRm"; version="1.1.6"; sha256="1d897c5xflbkkj25hw15rd62nggv000cv2j481x0lhdgmgldjhrh"; depends=[]; }; - maRketSim = derive2 { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; }; maSAE = derive2 { name="maSAE"; version="0.1-5"; sha256="0v0vlj41j3ddyxv8lld39k1ryrdjin7r6bj13x2agbklb1fd4an1"; depends=[]; }; mable = derive2 { name="mable"; version="1.0"; sha256="1ny8nfnyqj9c1n4b0m34kadpmnb4k2d81nd66cqxnz8dm9129vqj"; depends=[]; }; maboost = derive2 { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; }; @@ -8807,7 +8837,7 @@ in with self; { macleish = derive2 { name="macleish"; version="0.3.2"; sha256="1kna1wq3p6xfzfdhw8dpdfvy4l656xcrra1f0ir86a815pm2a8l3"; depends=[dplyr etl lubridate readr rgdal rgeos sp]; }; mada = derive2 { name="mada"; version="0.5.8"; sha256="17d41kpxjf6h8j83w6jhxm71f03nc8i2aw0xaqzrpcf5rxxy8wv8"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; - maditr = derive2 { name="maditr"; version="0.6.0"; sha256="1h2qvl84v0lp4fnsraar9kvlglifxjbpsascnrz3db5lrn1w53j0"; depends=[data_table magrittr]; }; + maditr = derive2 { name="maditr"; version="0.6.1"; sha256="1pfskiz5f3msf5af4nch1qbb5ki26r5glkfiqfb94l91g91b1c8b"; depends=[data_table magrittr]; }; madness = derive2 { name="madness"; version="0.2.5"; sha256="1cdryb65hlqc5b1xm5xs5r3gv8zd4kq17q79345b0p8r0m6addip"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="1.22.1"; sha256="0wk2svhi4209p8ab8i2g9q22kswpisphb2a9ln5lzwdhnryk4ya9"; depends=[digest magclass spam stringr]; }; @@ -8824,7 +8854,7 @@ in with self; { magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; }; - majesticR = derive2 { name="majesticR"; version="0.1.0"; sha256="0f6mxxjsrvv6pcimmmgvpfvpwqg8cn28pimxzcm8k00aqy4mg9h3"; depends=[jsonlite]; }; + majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeParallel = derive2 { name="makeParallel"; version="0.1.1"; sha256="1zm8k3gzxcirq221lh1vbxsjym68vc5s58lxd03s194pgixbwydr"; depends=[CodeDepends codetools whisker]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; @@ -8843,7 +8873,7 @@ in with self; { mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; }; - mapdeck = derive2 { name="mapdeck"; version="0.1.0"; sha256="1d93gg0s0xn4gqrrc6p94fppyhqibfjsmxml2ck6skacryd40wm3"; depends=[googlePolylines htmltools htmlwidgets jsonlite magrittr scales shiny viridisLite]; }; + mapdeck = derive2 { name="mapdeck"; version="0.2.1"; sha256="1slj4yrw7qir3cz70yqawbsz521n4614h6gjn0qpj75rj12wnxlk"; depends=[BH colourvalues geojsonsf googlePolylines htmltools htmlwidgets jsonify magrittr rapidjsonr Rcpp shiny spatialwidget]; }; mapedit = derive2 { name="mapedit"; version="0.4.3"; sha256="0ybd9vbdpr3i3wfpcn36dqj3n9i885xycris2nwgxzc9dxb5ad7a"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet leaflet_extras mapview miniUI sf shiny]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapfuser = derive2 { name="mapfuser"; version="0.1.2"; sha256="1q7l6rfs6dv76ifizfqq4pdpjpb2zwzd3vvrnhdzh8vw2mrlqcjg"; depends=[doParallel dplyr foreach ggplot2 igraph lazyeval LPmerge mgcv plotly stringi tidyr visNetwork]; }; @@ -8854,7 +8884,7 @@ in with self; { mapr = derive2 { name="mapr"; version="0.4.0"; sha256="169ah9v7cpw3hmaj6n575gi1zwazf4vh59n46zghb1x68nc2gqs0"; depends=[data_table ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; }; maps = derive2 { name="maps"; version="3.3.0"; sha256="05i2ppl5z4p8rawgqmy3z4ia05fcblpq1vvrmrkgkkpdlhczx6hr"; depends=[]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="0.1.0"; sha256="1qjc5hffrk2bjw6ihlna1h0k3q9s9i19l0q0mgvcm9wpjy4c8gra"; depends=[gstat raster rgdal rgeos sp]; }; - mapsapi = derive2 { name="mapsapi"; version="0.3.7"; sha256="1mf971himbcmyfbbjppp1clwdi102kh5cvgyzpfwj9rsgx4mqjfw"; depends=[bitops magrittr plyr sf xml2]; }; + mapsapi = derive2 { name="mapsapi"; version="0.3.9"; sha256="0jxwfw644d33xnj9jblcpw49qh8m4x5k4330nmz5rdd4hjnnzmsw"; depends=[bitops magrittr plyr sf xml2]; }; maptools = derive2 { name="maptools"; version="0.9-4"; sha256="1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; @@ -8871,7 +8901,7 @@ in with self; { marked = derive2 { name="marked"; version="1.2.1"; sha256="138m1clidyhahpz111iblff2w44m8zp0302vcj46frk1c60c46qi"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markmyassignment = derive2 { name="markmyassignment"; version="0.8.1"; sha256="1y388s73b1zs482d1d7z40kg4hizp46lc3279xspm2ryx4m49mzj"; depends=[checkmate codetools httr lazyeval rlang testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.6"; sha256="1gyj3ykwh4ljrb5s80hihy7wl89y3p4xkckspvv4ynl9lnsbm7cs"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; - markovchain = derive2 { name="markovchain"; version="0.6.9.12"; sha256="042qwp0zywbqz99sp70ykjlckfpch5p02szah651x1inp2im8fc6"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovchain = derive2 { name="markovchain"; version="0.6.9.14"; sha256="0szv913zi34yv58kj6cic8fkrfyrl60m1ym11sgsjha0pjlv3hlw"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive2 { name="marmap"; version="1.0.2"; sha256="03xmp7jz2jja7m92yczc2nlcyv4qlcy7lnj3nk5wb3alh1vxlyga"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; @@ -8880,9 +8910,9 @@ in with self; { matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; matchMulti = derive2 { name="matchMulti"; version="1.1.7"; sha256="0k5psmjzcyr7pm603vni7w2hvslck05r81cngm26pql2prdrv5yk"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; - matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-0"; sha256="1w1f4qvz2086h37fh10vwx2kqsshhciz5b9isxcbmay3a4xfc0a0"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; + matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-1"; sha256="0c2jaccjdwgnx39jgak35hanaxq301h3qaj90xivlr9dk8xg19qx"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.0"; sha256="1rpw5a52alh5diiqr7f87vhpgp3w3f8lg8wkaqvr5idid9fkll1i"; depends=[Rcpp RcppArmadillo]; }; - matconv = derive2 { name="matconv"; version="0.3.2"; sha256="0vnmqz5vzv5n0cfpgr30gkl0pv8p2b5cp3ap6mn01sxd671lx38z"; depends=[]; }; + matconv = derive2 { name="matconv"; version="0.4.0"; sha256="0kl0647m45mrk13fyr0mkx1x9v3im66ciky8k8nmy4ahkffyasi4"; depends=[]; }; mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; }; mathgraph = derive2 { name="mathgraph"; version="0.9-14"; sha256="11wcnjligjc0m0ibi7v5f9w4j2g0fmw33za8407d9fqdb0i5pf60"; depends=[]; }; mathpix = derive2 { name="mathpix"; version="0.3.0"; sha256="1a49yda4r9a6pbs641ch2kmxg3pf8zxfrfi30r19z6g15jfgdrvf"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; @@ -8899,12 +8929,13 @@ in with self; { matrixcalc = derive2 { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; }; matrixpls = derive2 { name="matrixpls"; version="1.0.5"; sha256="04sshb88rq2mp3y4rrs6nkzr4kc380vx380r911c7j975l55a183"; depends=[assertive lavaan MASS matrixcalc psych]; }; matrixsampling = derive2 { name="matrixsampling"; version="1.1.0"; sha256="1q0vcail34iwxc0wnwg2nw9n710fsjg5lgil5hib74vwrww1x1h7"; depends=[keep]; }; + matsbyname = derive2 { name="matsbyname"; version="0.4.9"; sha256="12367wcc3rj2rs63j2g5g9hab8x7vrmgmkf70q56y0i7g2zprr0c"; depends=[dplyr Hmisc magrittr]; }; mau = derive2 { name="mau"; version="0.1.2"; sha256="1wgiai8f1kbjh9hfwv4m0kavd44ib5xb33p8m16zpawnw14m7sj5"; depends=[data_table ggplot2 gtools igraph RColorBrewer Rdpack stringr]; }; maxLik = derive2 { name="maxLik"; version="1.3-4"; sha256="0jjb5kc7dvx940ybg7b7z9di79v75zm2xlb0kj2y7rmi45vvh6hq"; depends=[miscTools sandwich]; }; maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; }; maxent = derive2 { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[Rcpp SparseM tm]; }; - maximin = derive2 { name="maximin"; version="1.0-1"; sha256="1w3b24p6r974jgd7i93wisb25n7hjk0va8bb5n0xxfdrv3z0k591"; depends=[plgp]; }; + maximin = derive2 { name="maximin"; version="1.0-2"; sha256="1gg19x73kl1yghak9lx3fq0yl8vcpvcxqzfs6qqlky502ygcv96n"; depends=[plgp]; }; maxlike = derive2 { name="maxlike"; version="0.1-7"; sha256="0gi33hcjj456sjw7l3q4n46k4cb6m3ml3ycd93pnajxacl24swbb"; depends=[raster]; }; maxmatching = derive2 { name="maxmatching"; version="0.1.0"; sha256="1xbwrhmr8gzvlcprib7nzvqrcd355bhx7wkqxrvfk4g7dvskf9ka"; depends=[igraph]; }; maxnet = derive2 { name="maxnet"; version="0.1.2"; sha256="1rfcylbv068pz4jgry5ijszwf5fibz566s5iv0ar8dhv0fhjr86z"; depends=[glmnet]; }; @@ -8916,11 +8947,11 @@ in with self; { mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; mbest = derive2 { name="mbest"; version="0.6"; sha256="1x0f7y5hj6a35wq1xn6g7jyjn9c4zryahwlf07qrypgrcnj2m8vx"; depends=[abind bigmemory foreach lme4 logging nlme]; }; mbgraphic = derive2 { name="mbgraphic"; version="1.0.0"; sha256="0b4xr2ycx8v56fp40lnxv69qfp0yzai2hdwk3kw4wsmir91d2a91"; depends=[diptest dplyr extracat GGally ggplot2 gridExtra hexbin magrittr mgcv Rcpp scagnostics scales seriation shiny]; }; - mbir = derive2 { name="mbir"; version="1.3.4"; sha256="151pixrqg6wj8605vf8cscmh2a1f171k8a4fzkqv4dl8f1ivwphp"; depends=[effsize psych]; }; - mblm = derive2 { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; }; + mbir = derive2 { name="mbir"; version="1.3.5"; sha256="10sd5gk2k94cmi49nbpywqvh9bxj9q3psa3d00zmw1a7d6c0jjpd"; depends=[effsize psych]; }; + mblm = derive2 { name="mblm"; version="0.12.1"; sha256="1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"; depends=[]; }; mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; mboost = derive2 { name="mboost"; version="2.9-1"; sha256="02ia3y0fxfjl02fb1nnl93j640fyl18jm15cgxyybhf27w4jdvb7"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; - mboxr = derive2 { name="mboxr"; version="0.1.2"; sha256="0ga00dx318frdrf9zgddn8k23alc9kdq0kfl75mnvrnric0kx9v4"; depends=[dplyr magrittr purrr readr reticulate tibble]; }; + mboxr = derive2 { name="mboxr"; version="0.1.3"; sha256="16kfvpp18rdj2a09xjv2c6vrkddbvdbca2hhwnclrlrvaapdzxdw"; depends=[dplyr magrittr purrr readr reticulate tibble]; }; mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; @@ -8928,16 +8959,15 @@ in with self; { mcPAFit = derive2 { name="mcPAFit"; version="0.1.4"; sha256="1h5kiry8bvdrgyqf7cqsag0b7rscwc7phayzf6h4css1667bvm0g"; depends=[PAFit RColorBrewer Rcpp]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; - mcca = derive2 { name="mcca"; version="0.4.0"; sha256="07qqd1v70322s8z20zmhni5kfvy9izl5k2z62gdwkk29d76rg8s1"; depends=[caret e1071 MASS nnet pROC rpart]; }; + mcca = derive2 { name="mcca"; version="0.5.0"; sha256="01biwf3jnwhd2slmw5k2kkihmg73wakqm012a3akpar9ln1q5i60"; depends=[caret e1071 MASS nnet pROC rpart]; }; mccf1 = derive2 { name="mccf1"; version="1.0"; sha256="1d8dw3kb2p3n3kgpihbxmwvg4blvaiss4s09452xz0d1gkjk4y01"; depends=[ggplot2 ROCR]; }; mcclust = derive2 { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; }; - mccmeiv = derive2 { name="mccmeiv"; version="1.1"; sha256="0k9hbdxzj2nhwckxhm4w69n93xin56c1s3fw93pp5mp82m586y5c"; depends=[numDeriv survival]; }; + mccmeiv = derive2 { name="mccmeiv"; version="2.0"; sha256="042av3ggyphb38sip2wk5l87909xaz0y5f22bgv7r3l6vhz5nyb7"; depends=[MASS numDeriv survival]; }; mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1"; sha256="07ky3bvcns24qia9pyvf5lp7764h8gn2g8zr304iz4x9bq6jvsi0"; depends=[Rcpp RcppArmadillo trust]; }; mcen = derive2 { name="mcen"; version="1.0"; sha256="0dgic137n3qvxljj3f7j3kq3x2rkblxzg55hjbknspwp0i7i4lx8"; depends=[faraway flexclust glmnet Matrix]; }; mcga = derive2 { name="mcga"; version="3.0.3"; sha256="109m01mab5awjf8zjzwl9j7hzac15dyq3x6zba9hsy5i02k5d5w4"; depends=[GA Rcpp]; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; }; - mcglm = derive2 { name="mcglm"; version="0.4.0"; sha256="0k5zkdq3c4fvyhk0lfwikmrxcrd2hg3s820l8rswz7xhl645zr5a"; depends=[assertthat Matrix]; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; mclcar = derive2 { name="mclcar"; version="0.1-9"; sha256="0bwnivmajsrvmwskhk44qhz4nnc0irxq83g0kzbj4wshhivnwryp"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; @@ -8964,14 +8994,14 @@ in with self; { mdftracks = derive2 { name="mdftracks"; version="0.2.0"; sha256="0l8dc6ljrhbm8jwadaa3xkf6nx90vyiig15p7rryswczz9hw5ga6"; depends=[hellno]; }; mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; }; mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; }; - mdmb = derive2 { name="mdmb"; version="1.0-18"; sha256="104dbsrajcv0n83rnx9fhhjclffh7qr5kkswzlxqrcydrim2i5dq"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt]; }; + mdmb = derive2 { name="mdmb"; version="1.2-4"; sha256="0kdnl47dpyacl9gdi3i3fgwsv6fmf9ibjrwxzrnv0rzxr22zakrj"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; mds = derive2 { name="mds"; version="0.2.1"; sha256="01md6h3va2pvgx2yx30rmildn529zhqr8ars6k2kjr8q1wq92jar"; depends=[lubridate parsedate]; }; mdsOpt = derive2 { name="mdsOpt"; version="0.3-3"; sha256="040jg995drghr85qjis640dzakxlh82773bn4378wcpnnk3h343s"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; mdsr = derive2 { name="mdsr"; version="0.1.6"; sha256="1z0sjrvnvm1bgifapmaay57lr5dgj84xzppwn579g8kammaav89x"; depends=[babynames DBI dbplyr downloader dplyr ggplot2 mosaic RMySQL]; }; - mdsstat = derive2 { name="mdsstat"; version="0.2.1"; sha256="05hb8hjfsxljpqix9wgaiyaxwk6gwca4zwmimihp0mj6ylsndmcn"; depends=[lubridate mds]; }; + mdsstat = derive2 { name="mdsstat"; version="0.2.2"; sha256="0wrspmbdjsz6rpj54yqisszavfwsz8hzhkm423zhsnllficg29zq"; depends=[lubridate mds]; }; mdw = derive2 { name="mdw"; version="2017.12-03"; sha256="054vssnypbik0yf6smicggnkrqf6kx8k21nbf5rminsh00sx39k1"; depends=[]; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; meanShiftR = derive2 { name="meanShiftR"; version="0.53"; sha256="1pla9hr9nbbnc3hcmk0ywfh6129zng5lp3dmjqb3cgdrmwkdrx9i"; depends=[]; }; @@ -8986,7 +9016,7 @@ in with self; { mediation = derive2 { name="mediation"; version="4.4.6"; sha256="0prhpy9y26s388p9gv5sv4h5airixwy6ffjphhxmyp9h07088xxi"; depends=[Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; medicalrisk = derive2 { name="medicalrisk"; version="1.2"; sha256="1zdxv3rj7768kbyxfvr9n0hp4z7y0sf3r7ssqv731hjjp656l6xp"; depends=[hash plyr reshape2]; }; medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; - meditations = derive2 { name="meditations"; version="1.0"; sha256="01r1dwbyvbr7lrr3c3ab6ljiqs6bkfslfabrvvgd9s17jbql3ghz"; depends=[]; }; + meditations = derive2 { name="meditations"; version="1.0.1"; sha256="0wnx3zadpngfch0sb0ifqvsmzl613639f1yazwsgvhk29mycx4ss"; depends=[]; }; medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; }; meetupapi = derive2 { name="meetupapi"; version="0.1.0"; sha256="1iaxpfzgn478np9cjwz0zalfy1p7jwabnwpfv31svw052i8bs9yl"; depends=[dplyr httr magrittr purrr]; }; mefa = derive2 { name="mefa"; version="3.2-7"; sha256="1qrf6d3y38q7yy6bg3bxg7514d9paz1f8y6sr7lbksi30qn92fmj"; depends=[]; }; @@ -8996,39 +9026,40 @@ in with self; { meltt = derive2 { name="meltt"; version="0.4.0"; sha256="0m0r7in1s8vq2pvq7pxgwjfhqds8pwhcrn5hy0wa126s1y88v34x"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; mem = derive2 { name="mem"; version="2.14"; sha256="03yiarxvxm61cf1gxbzk2criw3cfpwsb6qj1rc9aglk9ywsni5x5"; depends=[boot dplyr EnvStats ggplot2 mclust RColorBrewer RcppRoll sm tidyr]; }; - memapp = derive2 { name="memapp"; version="2.11"; sha256="0f8xyxz8sbqdghgxhbr5khcfs58wq748w4n7jilxfphl55n4bhgr"; depends=[dplyr DT foreign formattable ggplot2 haven mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinydashboardPlus shinyjs shinythemes stringi stringr tidyr]; }; + memapp = derive2 { name="memapp"; version="2.12"; sha256="0y3y0s99z04ib1z10kygs9889nh2v1axyzgv7yqcxz5gaycx04yl"; depends=[dplyr DT foreign formattable ggplot2 haven mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinydashboardPlus shinyjs shinythemes stringi stringr tidyr]; }; meme = derive2 { name="meme"; version="0.2.1"; sha256="0ddrm82190f8yahnann1l5fwn55msfhhcizbr0vkb098x6m2l251"; depends=[ggplot2 gridGraphics magick showtext sysfonts]; }; memery = derive2 { name="memery"; version="0.5.0"; sha256="0bin1rmna5z0y568jbnga7pcrkgjy04av3bzcyf3fpvqqmn36r8f"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; - memgene = derive2 { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; }; + memgene = derive2 { name="memgene"; version="1.0.1"; sha256="1x3vf2f1yh40xw5vqcjlrn07zn9zh3sx4kc9dijxzygd9crl5a29"; depends=[ade4 gdistance raster vegan]; }; memisc = derive2 { name="memisc"; version="0.99.14.12"; sha256="0n8gl031n33r4iymlp3mnfilm9qwahxssrk4wlxfyp08w4mjlhjl"; depends=[lattice MASS repr]; }; memnet = derive2 { name="memnet"; version="0.1.0"; sha256="1lhpij3dm4whsawy6cxcfcwn9q881i8jbjpkrwvdsn63ibxrm55s"; depends=[BH igraph Rcpp]; }; memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; memoise = derive2 { name="memoise"; version="1.1.0"; sha256="034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj"; depends=[digest]; }; - memor = derive2 { name="memor"; version="0.1.1"; sha256="1l54hrbrccl6imfjj6lmb0rsfl5f5f87vaap43i4j0nbbm0y3jsb"; depends=[knitr rmarkdown yaml]; }; + memor = derive2 { name="memor"; version="0.2"; sha256="10w2jw9ma7yds2d179l7bv4rzpggp3l04kvqnncii6yf5f4lj9cd"; depends=[knitr rmarkdown yaml]; }; memuse = derive2 { name="memuse"; version="4.0-0"; sha256="1g63nssxrgqgzw8qjz8202qpwhps8fbck6pn77j2wsc82dm73y7v"; depends=[]; }; + mephas = derive2 { name="mephas"; version="1.0.0"; sha256="0338kr7hjbdrz2239lpyn3rplsg216hxvj532v80zrva0skrbzzf"; depends=[DescTools ggfortify ggplot2 gridExtra pastecs plotROC pls psych reshape Rmisc ROCR shiny spls stargazer survival survminer xtable]; }; merDeriv = derive2 { name="merDeriv"; version="0.1-6"; sha256="1wjhzqg3riwf32lb775amm49azl5v1xg2hahigg6jkbg8zq0h92g"; depends=[lme4 Matrix nonnest2 sandwich]; }; merTools = derive2 { name="merTools"; version="0.4.1"; sha256="1224cmkxbkd3r10z73ww0s1nyzg00x55fv91pn1gp8p7cmpp0ni2"; depends=[abind arm blme broom dplyr DT foreach ggplot2 lme4 mvtnorm shiny]; }; + mergedblocks = derive2 { name="mergedblocks"; version="1.0.0"; sha256="0g209f9vr5gjgsljnb6i8jr48azv982dbfc1anggfip82qivicqn"; depends=[randomizeR]; }; merlin = derive2 { name="merlin"; version="0.0.1"; sha256="14k8kz8icj3wgd3li83v0wfl61pdc97r7qjcsmmc5srp36kbw1i9"; depends=[MASS randtoolbox statmod survival]; }; merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; metR = derive2 { name="metR"; version="0.2.0"; sha256="0lp8462izsy0jhgm2kak85sdnnz75r6h0rjxkpx852lls6g3ibgl"; depends=[checkmate curl data_table digest dplyr fields Formula formula_tools ggplot2 gridExtra gtable lubridate maps maptools Matrix memoise plyr RCurl scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; - metScanR = derive2 { name="metScanR"; version="1.2.0"; sha256="1x32f23w5f3s7sc5gbbqzq9s83clarskj9vpnfnwryrx87dg1jjc"; depends=[geosphere leaflet plyr RColorBrewer RCurl]; }; - meta = derive2 { name="meta"; version="4.9-3"; sha256="0a891hxkf42jvmycljvsdpqg8acsx8p87arg95idccnrfq9y4ply"; depends=[]; }; + metScanR = derive2 { name="metScanR"; version="1.2.2"; sha256="07j9y54z039gnrp8w6xi0xj4xzl8x2qjlzgf4nh9frmwqd6cld2i"; depends=[geosphere leaflet matlab plyr RCurl]; }; + meta = derive2 { name="meta"; version="4.9-4"; sha256="1g5zxd4l8lkyhrvm9w1kwym6gxi8slpgmhgj79ihbhvwi0bzy4gp"; depends=[]; }; meta4diag = derive2 { name="meta4diag"; version="2.0.8"; sha256="1ila8x9r1rdmlwfpzfx1zj5yx1m4yrbhyb74db4wqbh1dswn7zsm"; depends=[caTools shiny shinyBS sp]; }; metaBLUE = derive2 { name="metaBLUE"; version="1.0.0"; sha256="0ppn4bvr10z32pghmv4wjv86k6n5y5bkfxc6h5mvb556v6jnl6d8"; depends=[Matrix]; }; metaBMA = derive2 { name="metaBMA"; version="0.3.9"; sha256="14c3q4aw89r3apzm0ils886xsc6agbn8d2wgp47dc2ddwf5n8p58"; depends=[coda LaplacesDemon logspline mvtnorm runjags]; }; metaDigitise = derive2 { name="metaDigitise"; version="1.0.0"; sha256="04hycv9dpy39l8fhql69mcn5w97f7sjxrhiz5vbpbawvfbkl0f0l"; depends=[magick purrr]; }; metaLik = derive2 { name="metaLik"; version="0.43.0"; sha256="1li40pgd9z00nrph9njwn6wysb1i9dkpqzcp6fzds6asvcxlqqfl"; depends=[]; }; metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; - metaMix = derive2 { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; }; metaRMST = derive2 { name="metaRMST"; version="1.0.0"; sha256="1mq9j7iczjh7d3cps9g1bh0f8k388bdn8d5lkjs2s8y9fq1kxzmx"; depends=[meta mvmeta rstpm2 survival survRM2]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; metaSEM = derive2 { name="metaSEM"; version="1.2.0"; sha256="0b10as2bb5f31r59548v1j8saxd16icrsg915j2yv3nxzyi5iq7f"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; metaboGSE = derive2 { name="metaboGSE"; version="1.2.1"; sha256="169m59y2g3618rpjjlmwsj1alkfcjfhpsyzhz9010vn38bbwgmxr"; depends=[AnnotationDbi ape Matrix sybil sys topGO]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; metacart = derive2 { name="metacart"; version="2.0-0"; sha256="011incw57n11g5fmn4k8vcpqww8nn5xqsbh65p9gx2nad1kg3g35"; depends=[ggplot2 gridExtra Rcpp rpart]; }; - metacoder = derive2 { name="metacoder"; version="0.3.0.1"; sha256="1mih4h90xfshzcc0hl65mpqwkm90n9j3n1ccxl13b6b3mn1bvdds"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 igraph lazyeval magrittr phyloseq phylotate RColorBrewer Rcpp RCurl readr reshape2 rlang scales seqinr stringr taxa taxize traits vegan zoo]; }; + metacoder = derive2 { name="metacoder"; version="0.3.1"; sha256="1pp1y6s9hbzscbksbjvnhs0p6qb31hs4nlyk67wjsbbh4zcsasdn"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phyloseq phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr svglite taxa taxize traits vegan viridisLite zoo]; }; metacom = derive2 { name="metacom"; version="1.5.1"; sha256="18n3mbmjna3db44gscsdgv1j8f11jhikiw7yg3vbw2a9v5w3ypkv"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.3"; sha256="1i3m8a9f97ypgfrych4180q1qqx0ld4icypiq019gppdwpfny5b9"; depends=[Rcpp]; }; @@ -9044,14 +9075,14 @@ in with self; { metamer = derive2 { name="metamer"; version="0.1.0"; sha256="03a7r5dsqjxhjmdq5ybg18l9nf7szn848q9zr4jdyfxw8wi2y75k"; depends=[FNN progress]; }; metamisc = derive2 { name="metamisc"; version="0.1.9"; sha256="0wjwx7ncplpchwbz0l4xmsmy0faj2wnqjxvxyi05992v3rjv4j8k"; depends=[ellipse ggplot2 lme4 metafor mvtnorm plyr]; }; metansue = derive2 { name="metansue"; version="2.3"; sha256="18vy294862lfgxiw9cikai9svy3wpwk2bvz3vp20fcslg90mn3xp"; depends=[]; }; - metap = derive2 { name="metap"; version="1.0"; sha256="18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h"; depends=[lattice Rdpack]; }; - metaplot = derive2 { name="metaplot"; version="0.8.0"; sha256="10nb3xiy2dqxk51dpyg435r99hmj23agi2kly7y7vy2404142bq6"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; + metap = derive2 { name="metap"; version="1.1"; sha256="10kv7z8pik5iy374h399vws0ldf41y2nczlwh8axqf9dcwl084i0"; depends=[lattice Rdpack]; }; + metaplot = derive2 { name="metaplot"; version="0.8.2"; sha256="0xanqmdhgir2y7y3qj97qwc480pyawb28gq37lbhfv6fp3xq6296"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; metaplus = derive2 { name="metaplus"; version="0.7-11"; sha256="05pkgw0zlq3q9mvdw2yxz9mxzqwq3c8q6cwvh87cigw1pf8y9an7"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; metasens = derive2 { name="metasens"; version="0.3-2"; sha256="1wxp6gzq3wmas8hm8vqxclawxkc4p8dw2apzmg0nciqvas6dzic8"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; metavcov = derive2 { name="metavcov"; version="1.1"; sha256="1x87knvypkfg0x223aiak7fy7zdlfn74crmvnqzhxf2vmxljnvnh"; depends=[corpcor]; }; - metaviz = derive2 { name="metaviz"; version="0.2.0"; sha256="1a4qwhg3lb5jxnddmi7zf2sc2yjzjap3rh6hfm3965bydpf1q57c"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; + metaviz = derive2 { name="metaviz"; version="0.3.0"; sha256="1ayz9za3zwmyna1hanzm83gb7vw3dclj3z4g35rk5dz6s4zgqsvm"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.53"; sha256="15bjhkcn4zcll3cfgpzcdj0zv753x29qsjndy3h2zzqn83qywx9s"; depends=[ncdf4 raster sp XML zoo]; }; @@ -9068,17 +9099,16 @@ in with self; { mfbvar = derive2 { name="mfbvar"; version="0.4.0"; sha256="1bxfs7081nd7l0lknag2n184rd1d91cr5sgsnjsfwgdbws8sl8d3"; depends=[ggplot2 pbapply Rcpp RcppArmadillo]; }; mfe = derive2 { name="mfe"; version="0.1.1"; sha256="0z9ddkck1z14b9cwvaam0xh869lh2fsjm1d3i8giyrcry0vvpp61"; depends=[cluster e1071 infotheo MASS rpart rrcov]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; - mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; + mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="1.0.1"; sha256="0bdj890v2rinsddny8kwa48cgqh9qlzfd7k5s4i9mg40ajr0f291"; depends=[MASS SDMTools]; }; - mgcViz = derive2 { name="mgcViz"; version="0.1.1"; sha256="1vv76cmfva1lsi921i337m44m9vykfp4rb9xidxww8dk3i9agg97"; depends=[colourpicker data_table dplyr GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI mvnfast plotly plyr qgam rgl rstudioapi shiny viridis]; }; - mgcv = derive2 { name="mgcv"; version="1.8-26"; sha256="02bsz455fr5hyhpmgcrd266qafs2wbz3ygdipxg9gfazbdvq2v4q"; depends=[Matrix nlme]; }; + mgcViz = derive2 { name="mgcViz"; version="0.1.3"; sha256="0s1macn91lvzhb5hkccnr3vx9iv63w8fp4iipl7vd1m37zqais33"; depends=[GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam rgl shiny viridis]; }; + mgcv = derive2 { name="mgcv"; version="1.8-27"; sha256="06vx1z52gcdmji0phmphfa0sg62gwxkw590prplxgv4da7xrk2y8"; depends=[Matrix nlme]; }; mglR = derive2 { name="mglR"; version="0.1.0"; sha256="1b7nd913d4a1szgw2qnhlnjqhfxr95xag6jwjcb2wnnxd12lib7n"; depends=[biomaRt dplyr gdata ggplot2 gplots magrittr stringr]; }; mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; - mgm = derive2 { name="mgm"; version="1.2-4"; sha256="0fyg9dxvrl3biamqc908z1vc7pji1n4l2bwxjfdkwjb5cf6snd3f"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; + mgm = derive2 { name="mgm"; version="1.2-5"; sha256="1f2b3qm6aqkpqqj6ls4zvrd8x4m22jc3j63p29dvz8gfpkifkcma"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; - mgraph = derive2 { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; }; - mgsub = derive2 { name="mgsub"; version="1.5.0"; sha256="03w40vs3vfyrksnzbawyvp02kwrmn7cqhlv6xhfzfbh8jmz55wvr"; depends=[]; }; + mgsub = derive2 { name="mgsub"; version="1.7.0"; sha256="075rwsqaw2qmj5a42p3miv3nxyx3lvfj538vnmchfx221hslrhzq"; depends=[]; }; mgwrsar = derive2 { name="mgwrsar"; version="0.1"; sha256="13h56fgq3fs28fqh19hwbcza622xd921qnjwcgw2rjwaabqz70w5"; depends=[doParallel foreach htmltools leaflet Matrix nabor Rcpp RcppEigen sp spgwr]; }; mhde = derive2 { name="mhde"; version="1.0-1"; sha256="1q7lbj2is024f5rmfpdn3a0hsb78bf62ddal3chhnh3bi1z3jrjk"; depends=[]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; @@ -9127,8 +9157,8 @@ in with self; { miic = derive2 { name="miic"; version="1.0.3"; sha256="088szscn9v9279w86mypxphp3avv17iijvcvlckx3h1ka75lkx27"; depends=[bnlearn igraph MASS ppcor Rcpp]; }; milr = derive2 { name="milr"; version="0.3.0"; sha256="0z4d22fd6gd3zbi973vws9jqyh4c4m4i4ajcpxv934vxmbj0cma9"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; }; mime = derive2 { name="mime"; version="0.6"; sha256="00f4gw4sg1kn03s67gficxgb7a7fb6pwhlvrxrml05q1mc2vcxa7"; depends=[]; }; - minPtest = derive2 { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; }; - mindr = derive2 { name="mindr"; version="1.1.9"; sha256="0alwbqfdqb5f3qfyvw1b46bm988c2nvhdvk47hkmr0iigzagvxam"; depends=[htmlwidgets jsonlite knitr]; }; + mimi = derive2 { name="mimi"; version="0.1.0"; sha256="1fmnk14akbw10n9gla37sgvxchgfkv8znqa5qybhsspdjswpa15n"; depends=[ade4 data_table doParallel FactoMineR foreach glmnet softImpute]; }; + mindr = derive2 { name="mindr"; version="1.2.0"; sha256="050zmr8b4a0j1xph8vr2zs58i7xrsnyx4k53rz5rkdkkdxdkyl85"; depends=[data_tree htmlwidgets jsonlite knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; mined = derive2 { name="mined"; version="1.0-1"; sha256="09jcyzirc4f69g4n5490pwrjqbdd40fwn8liy0xarlf7cnqqnzzk"; depends=[Rcpp RcppEigen]; }; minerva = derive2 { name="minerva"; version="1.5"; sha256="0w7achbpqqgs31q6ppw9dh6vmvhlv4jngyvyz4k33zvdjpn3z0yb"; depends=[Rcpp]; }; @@ -9146,10 +9176,10 @@ in with self; { minval = derive2 { name="minval"; version="0.8-1"; sha256="11sr69hmqnh5g2zbfajy3wqc57759basky1w72dnrd38rq50llxs"; depends=[]; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; - mirt = derive2 { name="mirt"; version="1.29"; sha256="0rmnzs39x4b6v5sb8v23cxnsndnck4mb9757987r8wdnhbdx0hkr"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; + mirt = derive2 { name="mirt"; version="1.30"; sha256="1j4l7hnx2rj6nixs7ylcvc7d24wbj1mfs9fccsyhzrrwadn6drvq"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.8"; sha256="1syv0j4gcdx5860kxshmr0m2d1klmxfi4bwcsc7lc5ss5kw63yi1"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.2"; sha256="0vjcbgl1s8haqc0xi4k8dsqvhr2qyz4ikhjwmqrxyl5xssjy330r"; depends=[GPArotation Rcpp RcppArmadillo]; }; - misaem = derive2 { name="misaem"; version="0.9.0"; sha256="0ylapcsxdwb4h17k2n6frrxvirmvbs4x4psscjij8vmvrb2qh3pw"; depends=[magrittr MASS mvtnorm]; }; + misaem = derive2 { name="misaem"; version="0.9.1"; sha256="1790igbb4nlp9d9h17gzp3backazpf8bi66n1ik3h58qwv4610hj"; depends=[MASS mvtnorm]; }; misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-4"; sha256="1kvkbvrmaqclwdfghkrsmnzb6xbi97icay2wwb7k5m34xhx4ha82"; depends=[MASS MCMCpack mvtnorm R2jags]; }; miscFuncs = derive2 { name="miscFuncs"; version="1.2-10"; sha256="1kqya581n76ff9avhj6xm6nwsbw7zlm4mwy0vyvdlqlf7c381qq0"; depends=[mvtnorm roxygen2]; }; @@ -9160,14 +9190,15 @@ in with self; { mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; + missCompare = derive2 { name="missCompare"; version="1.0.1"; sha256="0f173463dsr2xcj228aysfnabrdv8i2c9sprmd2jndn65dv8hhsz"; depends=[Amelia data_table dplyr ggdendro ggplot2 Hmisc ltm magrittr MASS Matrix mi mice missForest missMDA pcaMethods plyr rlang tidyr VIM]; }; missDeaths = derive2 { name="missDeaths"; version="2.5"; sha256="0pslssgf580zd0dd7m0l97bzgxnywj2qac0agxv6ih1a0xlxz874"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; - missMDA = derive2 { name="missMDA"; version="1.13"; sha256="1jzhl7j506wm2s71mn3kp0ij22z0h3pra4q552s30kv48gdk8h0w"; depends=[FactoMineR mice mvtnorm]; }; - missRanger = derive2 { name="missRanger"; version="1.0.3"; sha256="00gcnpvvy65v6k5qjk6xavdis02l8s9a56vwi39kw0rw8yhkla73"; depends=[FNN ranger]; }; + missMDA = derive2 { name="missMDA"; version="1.14"; sha256="1pqwfs1p7i624ilddj48i4kig6pjw5b28ic33l09g0c4bq7nw5lh"; depends=[doParallel FactoMineR foreach mice mvtnorm]; }; + missRanger = derive2 { name="missRanger"; version="1.0.4"; sha256="02llqg10lfjk917miymnln6g77c5v376bxz953q81h8dsh3wrklh"; depends=[FNN ranger]; }; mistat = derive2 { name="mistat"; version="1.0-5"; sha256="1vyx918b7iv1wcnk23bnlxljwy0hglpdx5drhrs5qcd45f6jrghc"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.1"; sha256="06y01kd11gyysyh57gi6gxamacwxwjpdj83xn63wa9az8ncl3y8s"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; - mitml = derive2 { name="mitml"; version="0.3-6"; sha256="1pkqv4qazih3byws5z6629pp232n8ra56lip7502727b0b4bsndw"; depends=[haven jomo pan]; }; + mitml = derive2 { name="mitml"; version="0.3-7"; sha256="0yqyxkyi1kmv5k63wxj5kkg5g8igk1axk2csb4xhj6wz0p89dxy6"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive2 { name="mix"; version="1.0-10"; sha256="0z16ddbh79kqxi64bl1h2sd8anpgc48n9d1nyr2zlln39nhv8w8g"; depends=[]; }; mixAK = derive2 { name="mixAK"; version="5.1"; sha256="0i9gp66d1mzskiif0bk0w88cinc923fsj4vi7pv0im2cwmxksiiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; @@ -9187,30 +9218,27 @@ in with self; { mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; }; mixlm = derive2 { name="mixlm"; version="1.2.3"; sha256="0i7nrn31yaicdpwfssnid1x8w51iv17lcl96zfr1pgrf97d7gkqd"; depends=[car leaps multcomp pls pracma]; }; mixor = derive2 { name="mixor"; version="1.0.4"; sha256="1l296z0a3kamb1m94pfx3vczp36pa0np101fy5c23kh45s59pbs7"; depends=[survival]; }; - mixpack = derive2 { name="mixpack"; version="0.3.6"; sha256="0q19mal86qlriwilabgy3sn33iymi5hl3wa33kvb8cd1dgdmjr7a"; depends=[mvtnorm Rcpp RcppArmadillo]; }; mixreg = derive2 { name="mixreg"; version="0.0-6"; sha256="04g863yxrlj0wqsmzzxph5110g3gjk094r59zzk0b9r89m8vhpsl"; depends=[]; }; mixsep = derive2 { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; mixsmsn = derive2 { name="mixsmsn"; version="1.1-5"; sha256="0y1ysh75xqsqk87717akiqi8p6varry8n92hanl4qwy7la0ksy7w"; depends=[mvtnorm]; }; - mixsqp = derive2 { name="mixsqp"; version="0.1-79"; sha256="17lcgpvy6z4fyxipf5s3p5d0xz7d0f8cppa5rp16mx76y9vxvl8f"; depends=[Rcpp RcppArmadillo]; }; mixtNB = derive2 { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; mixtools = derive2 { name="mixtools"; version="1.1.0"; sha256="13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl"; depends=[MASS segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; }; mixture = derive2 { name="mixture"; version="1.5"; sha256="1ahr8jw93xnd5hmy3h4sr209ql7gmkwbvnnfmiplbpc17czqgcn4"; depends=[]; }; mize = derive2 { name="mize"; version="0.2.0"; sha256="13l6f0i6k2y2cqad80zi35vqpkd0p8xl0hmf8djrsk1nmjqap1gc"; depends=[]; }; - mizer = derive2 { name="mizer"; version="1.0"; sha256="0qsf3wd8ipql344i8brv1d7qbr9g5y0qhh00lxj9n8sgjg52x7a5"; depends=[deSolve ggplot2 plyr progress Rcpp reshape2]; }; + mizer = derive2 { name="mizer"; version="1.0.1"; sha256="1vn03f3j9vd8hwz18i67blif33y3cd7hc8m1h4aw7wkgdpqsyb4b"; depends=[deSolve ggplot2 plyr progress Rcpp reshape2]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; mkin = derive2 { name="mkin"; version="0.9.47.5"; sha256="1cnzvq3wbkyzxajwk8h7pxyabfw0dbiv6dwga337ssf643rq9a8v"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlDNA = derive2 { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; }; mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.4.1"; sha256="04ginifm625k7qy5s2s7rwqa5gwi8frrd2vs332jiw2sgpbi45ig"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; }; + mlVAR = derive2 { name="mlVAR"; version="0.4.2"; sha256="18a2nlpm3c7j9wr6winf8ymvw8jr7flxlmr99r6ngvbir97fq41g"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; }; mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; - mlbgameday = derive2 { name="mlbgameday"; version="0.1.2"; sha256="03mz88y29wkn3510p8kzhapx0gj0mkqf0bgcjc0jpph2r1020c9a"; depends=[DBI doParallel dplyr foreach iterators magrittr purrr stringr tidyr xml2]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; - mldr = derive2 { name="mldr"; version="0.4.0"; sha256="1nx21yyxfaiyxpbjkc5sif6pis5v2skisxcxdqk4479h54qzwlj3"; depends=[circlize shiny XML]; }; - mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.0"; sha256="0kbfaf39vkhvscw47bkx2mmc6cmgwz1cys62iiw3yb6kvkzddr3s"; depends=[]; }; + mldr = derive2 { name="mldr"; version="0.4.2"; sha256="07d5zcid7bh8axkzi2x6mwj5zny5xfydzjdygjl3b0mz2qqrak1n"; depends=[circlize shiny XML]; }; + mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.2"; sha256="0zyfv8xy5yik0k3j0kf9r43xrvj528qzdb1v74sfi24vim6k6503"; depends=[]; }; mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; mleap = derive2 { name="mleap"; version="0.1.3"; sha256="17i6rjbrf14g6857jpkpjwcac028861m1nn073wzf2kmznd2rfkk"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; }; mlearning = derive2 { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; @@ -9225,12 +9253,11 @@ in with self; { mlmRev = derive2 { name="mlmRev"; version="1.0-6"; sha256="0mvmahnbbp478xwldj4wlsjib4v4afhs07643gxgcqpi56zbd5h7"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="4.0-1"; sha256="0pk2h4m74r95dfkqzliixi6z1rwdfc6gbz8c3162y22m919f00vc"; depends=[car gplots lme4]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; - mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.4"; sha256="1m58fp0izp03filb9wzw8fjrgy383p20jpynvgmxngbfp8bvspy6"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; - mlogit = derive2 { name="mlogit"; version="0.3-0"; sha256="0frggwb1yzfs229ys60qc4acfnq2zwjr6a1zb4fv07s1zlwrvnf1"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; + mlogit = derive2 { name="mlogit"; version="0.4-1"; sha256="0w00x842lrq09j924kq76l2widg1kha5jwwbkh2lrdci4mgvb3xz"; depends=[Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; mlr = derive2 { name="mlr"; version="2.13"; sha256="07816gbswlv56qacf2byp5a5yg4hicx4kya49h9fmhfxmkkrnwp8"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlrCPO = derive2 { name="mlrCPO"; version="0.3.4-1"; sha256="1kq8y24vvzxp1jbn52cddh0gq183pbfqs0gpi17my5xh892aszi9"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; + mlrCPO = derive2 { name="mlrCPO"; version="0.3.4-2"; sha256="04vgx2akrwa1s20d5g7clxd20dwvcyj91h7rh3prf96wbp76vvmx"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.2"; sha256="1ziyiycgwr4vgilji8dkf1c0kyqjnbmqi3qj35q3si2xbnmcm14f"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; mlt = derive2 { name="mlt"; version="1.0-4"; sha256="1brgfs4dyiwil0i1xm88xw6p8vbgp8fy7vmr7rh6q035dl1axf87"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; }; @@ -9246,6 +9273,7 @@ in with self; { mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; mmcm = derive2 { name="mmcm"; version="1.2-7"; sha256="11dgb8crz5pjpx66cxxzn4lg58jbaxxhfqlcw3hdp9wpvyqjh3sb"; depends=[mvtnorm OpenMPController]; }; mmds = derive2 { name="mmds"; version="1.1"; sha256="0f5qzkfhi7vg8vsd8r41idmbwrrgc7qzfnp81adms2yzrza17wrw"; depends=[]; }; + mme = derive2 { name="mme"; version="0.1-6"; sha256="1k60y1yrf7fv939v32kf3il7r3cws0kih4bpm0ap28fvbx3vr3yb"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.3"; sha256="0hx59pizd6sgryca7g26n2wa5rdi3zd059w7yz66981p6mi4a5dk"; depends=[]; }; mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; }; mmm = derive2 { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gkjc0x8ii54faz563byjv3d8"; depends=[gee]; }; @@ -9259,10 +9287,9 @@ in with self; { mmtfa = derive2 { name="mmtfa"; version="0.3"; sha256="0qfszr6f10v27w1pfns78dyarznqryl4m1ppyqap7l8fc12sliky"; depends=[matrixStats mvnfast]; }; mmtsne = derive2 { name="mmtsne"; version="0.1.0"; sha256="1by0hrggla6idc1isnq072i1wfpw4x7id3hkg8l65gy8iycccd12"; depends=[]; }; mnis = derive2 { name="mnis"; version="0.2.7"; sha256="1yhhgrhsk3ww93vd29ipw16bkn16w0b2i7d46cb5bb5xs4s7vivd"; depends=[dplyr httr jsonlite Rcpp stringi tibble]; }; - mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; }; - mnreadR = derive2 { name="mnreadR"; version="2.1.1"; sha256="1grmcjv3k54w8gilpwf7msgvfgfdgmxqmjykh8hjd9ny63w04s8x"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; + mnreadR = derive2 { name="mnreadR"; version="2.1.2"; sha256="1kc55rwq1lg6ngmia0hjim5ki7aif71754whvh4nz252qq0j8w3b"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; mobForest = derive2 { name="mobForest"; version="1.3.0"; sha256="0gzn3lyi9ph5dcrfbw4xs4rkf5ngf28abf1n8vap96fdhc6nmg88"; depends=[modeltools party sandwich strucchange zoo]; }; mobsim = derive2 { name="mobsim"; version="0.1.0"; sha256="077hw1162giwc90y5dvj9052i5hxdf2ii29m9q8ky028375dsd0f"; depends=[Rcpp sads vegan]; }; mockery = derive2 { name="mockery"; version="0.4.1.1"; sha256="1vfmjcjjyw2v5y64hmpfib6v0f6ms4k5ycvc9pmj9l4nkzq2al6b"; depends=[testthat]; }; @@ -9270,7 +9297,7 @@ in with self; { mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; modEvA = derive2 { name="modEvA"; version="1.3.2"; sha256="0p41fl0k780rx1vmq9laknz01ar6507sj8ss8kphrqkjnymsi2a0"; depends=[]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; - modQR = derive2 { name="modQR"; version="0.1.1"; sha256="1dc04wrax73f6fzkl6ycsa3wzf5347h79ah3vy3m24f4hjncnffw"; depends=[geometry lpSolve]; }; + modQR = derive2 { name="modQR"; version="0.1.2"; sha256="0x4405gaxpmmy6a0r8s7sxdi2lnc76f2i174h7xqlrwqy13xyfvv"; depends=[geometry lpSolve]; }; modTempEff = derive2 { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; }; @@ -9278,18 +9305,18 @@ in with self; { modehunt = derive2 { name="modehunt"; version="1.0.7"; sha256="0qz9kmf1qfs2dr7kzm9l7ac0h5rvi3b9j9896p991sk4bcalsl0b"; depends=[]; }; model4you = derive2 { name="model4you"; version="0.9-3"; sha256="03s87dklil69znflny9vcl934yisfb13d0gdk94279cb4hb693c0"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; modelObj = derive2 { name="modelObj"; version="3.0"; sha256="0wc67zsh26zyr7x9s229g2mppfk6g6z12j74zj2bdhk2m7i2x3zq"; depends=[]; }; - modeldb = derive2 { name="modeldb"; version="0.1.0"; sha256="1pb9vnviz0sy9cz2jns34j7fwadi0j250smixr840hjjvvgxyzwf"; depends=[dplyr ggplot2 progress purrr readr rlang tibble tidyr]; }; + modeldb = derive2 { name="modeldb"; version="0.1.1"; sha256="1d3d6r3nn82m2s4yxm0h0is7ik74r30s56872wkikxcr4m6iksi0"; depends=[dplyr ggplot2 progress purrr readr rlang tibble tidyr]; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; - modelr = derive2 { name="modelr"; version="0.1.2"; sha256="09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"; depends=[broom dplyr magrittr purrr rlang tibble tidyr]; }; + modelr = derive2 { name="modelr"; version="0.1.3"; sha256="08xls7k17r3i8gaysw2wh6l91z2ffhdqmpb50pqsqv3xq53v4dp5"; depends=[broom dplyr magrittr purrr rlang tibble tidyr]; }; modeltools = derive2 { name="modeltools"; version="0.2-22"; sha256="1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; moderndive = derive2 { name="moderndive"; version="0.2.0"; sha256="165dll1bkjmd949mwy165hrz22ajbkn3ap5l8f8pqwksw78rsgqb"; depends=[assertive broom dplyr formula_tools infer janitor knitr magrittr rlang stringr tibble]; }; modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; - modesto = derive2 { name="modesto"; version="0.1.1"; sha256="13vvncimrjcypghd02jx8wjrhgvdw2nr1gmdyayqj2n4y2vn60fb"; depends=[markovchain]; }; + modesto = derive2 { name="modesto"; version="0.1.2"; sha256="0vmdj8wcy0vv9jaihxrj0m5sr7favz18ngfqc8pd8rd4ipcnxkjf"; depends=[markovchain]; }; modi = derive2 { name="modi"; version="0.1.0"; sha256="0v78vzb22v2h2qlfhsyi0d2j3c2gj3wgv67p6gv74269kiaglf92"; depends=[MASS norm]; }; - modifiedmk = derive2 { name="modifiedmk"; version="1.2.0"; sha256="1cwflvfcihl5i5w6f31llnsyrffzwf4s31yqsrdwp7mzg5xi0liw"; depends=[boot]; }; + modifiedmk = derive2 { name="modifiedmk"; version="1.3.0"; sha256="09105n5x8lq726n4fglhz2cmqacb8xhmzq07wamq8sj3svjpm7yh"; depends=[boot]; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; modmarg = derive2 { name="modmarg"; version="0.9.2"; sha256="1clyfvn5k87nyh5cj4b0yi2zkavwvnirhlirxkzi8m2qijdl9vgh"; depends=[]; }; modopt_matlab = derive2 { name="modopt.matlab"; version="1.0-2"; sha256="0g5mswalv4y7p1k3n8a6qf7wb072m4bjq2ml2j83dz2j2bmvygsd"; depends=[ROI ROI_plugin_glpk ROI_plugin_quadprog]; }; @@ -9317,14 +9344,13 @@ in with self; { monotonicity = derive2 { name="monotonicity"; version="1.1"; sha256="06irf6jlmhmj70c45ilf66yy2k81i3rg1qgw9ch08mj1j8ahyx7x"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; }; moonBook = derive2 { name="moonBook"; version="0.2.3"; sha256="0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6"; depends=[magrittr nortest purrr sjmisc stringr survival]; }; - moonsun = derive2 { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fayyi4i0jk1k561dp6cbjg2b3lmdml0whmi"; depends=[]; }; mopa = derive2 { name="mopa"; version="1.0.1"; sha256="1v876al1afli002v44b4j2acb6n66f0hzz4bmcl60jyny43d1n0c"; depends=[abind dismo e1071 earth gtools lattice PresenceAbsence randomForest ranger raster rpart sampling sp spam spatstat splancs tree]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morpheus = derive2 { name="morpheus"; version="0.2-0"; sha256="07gk05qpabbg96svgnp2m9sw3fxsh2mgfwyda423c03yhxn1pnsm"; depends=[jointDiag MASS pracma]; }; morse = derive2 { name="morse"; version="3.2.0"; sha256="18rr17p2r1b2w2vah77kv3v4fj1awm9d4pzywp633h6qi1fk5ivc"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; mortAAR = derive2 { name="mortAAR"; version="1.0.1"; sha256="1dgxx5sh0nskzbigr8yq389lsnalp45d6m92q6g07jpqm7nzbazd"; depends=[magrittr Rdpack reshape2]; }; - mosaic = derive2 { name="mosaic"; version="1.4.0"; sha256="10jbrg8kli00kfgbh2f67bymm5cnlancc9dplb1j7fl552yjddn2"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; }; + mosaic = derive2 { name="mosaic"; version="1.5.0"; sha256="1j3dq8y2zpr3cad5pgbd3qm9ls17z0s6f9qqp5ddh110wf5kz0h4"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel glue gridExtra lattice latticeExtra lazyeval leaflet MASS Matrix mosaicCore mosaicData readr tidyr]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.0"; sha256="05s14rmgi15xcz50hcz7l26l95yx9g4i3kihzh0laz8bpi443i39"; depends=[MASS mosaic mosaicCore]; }; mosaicCore = derive2 { name="mosaicCore"; version="0.6.0"; sha256="1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"; depends=[dplyr lazyeval MASS rlang tidyr]; }; mosaicData = derive2 { name="mosaicData"; version="0.17.0"; sha256="04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"; depends=[]; }; @@ -9334,25 +9360,25 @@ in with self; { moult = derive2 { name="moult"; version="2.1.0"; sha256="0k0969fwy648x25xw42w5ncimyw2cbq305rzf4m77p3pf0k50m9b"; depends=[Formula Matrix]; }; mountainplot = derive2 { name="mountainplot"; version="1.2"; sha256="1bbgkps1yhfa0lmapqkhhl5mc63p0gzszxw2g910dbi1cjc0pphx"; depends=[lattice]; }; mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; - mousetrap = derive2 { name="mousetrap"; version="3.1.1"; sha256="150760bpalssalh2grh4jfpw3vsbysnnfvnvy2xk1yrcn3234ynj"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; + mousetrap = derive2 { name="mousetrap"; version="3.1.2"; sha256="0kk5i0xzxbcdjx9i2ck429z8pa98rxrqcb5xvck5k9fisprp5xi6"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-4"; sha256="0j5gp1l374479lsijw1hz00pxs09zzh7hapljv80lsvr24vfscpa"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="3.1.0"; sha256="0f5h5apwhp2z4ya8mkiflqfp46kmhfdr4zssi3rpkyl615d3dz9z"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; }; moveHMM = derive2 { name="moveHMM"; version="1.6"; sha256="1wz8yg87rxkq70hnahv1jd027938vl9g4wr9zvnq24vwc7hzdafz"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.9.9"; sha256="1kq42swcm3gb7aiyw8j1rfk2mbgwiz5c44rcz2mbxgs6mac1fj1f"; depends=[geosphere ggplot2 gridExtra lubridate maptools move pbapply plyr raster rasterVis rosm RStoolbox simecol sp zoo]; }; - moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.1"; sha256="020bl3i0i393dfknix03k8y70fjsf0lbw0mqrnhwsvz8kwrw3hi1"; depends=[move Rcpp]; }; + moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.2"; sha256="0dlq8l76j69h41sns3xvs6r8xyp9sqlk62n5lwh020m6dl66z9y3"; depends=[move Rcpp]; }; movecost = derive2 { name="movecost"; version="0.1"; sha256="0h1xc5985r696lvwqncxd6blvzxzrgsw27wcw8cllg92yfzjnwks"; depends=[gdistance raster rgdal rgeos sp]; }; mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; - mpath = derive2 { name="mpath"; version="0.3-5"; sha256="1yv4pl6ph3d5cfrg1li5capcsvl3h321s0bvzl6mkcn0vnm23jdm"; depends=[bst doParallel foreach glmnet MASS numDeriv pscl]; }; + mpath = derive2 { name="mpath"; version="0.3-6"; sha256="18wjgfil42ra5hwzy02scsyx044n979yawy457js43zgvgbda63i"; depends=[bst doParallel foreach glmnet MASS numDeriv pscl]; }; mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; }; mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; }; - mplot = derive2 { name="mplot"; version="1.0.1"; sha256="1bs9hy28hmiz630dwjynlc0apnyi7hz5h9p8al9dy0k7lcsmc4g1"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps plyr reshape2 scales shiny shinydashboard tidyr]; }; + mplot = derive2 { name="mplot"; version="1.0.2"; sha256="17idwxi74d2477dxb548m1jhknlrf07cd6l78g2i0s63zpxs3a4a"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps plyr reshape2 scales shiny shinydashboard tidyr]; }; mpm = derive2 { name="mpm"; version="1.0-22"; sha256="0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-4"; sha256="0gv9xswrfvndcjal0csab1w2cnl4rg8pznyxbz84b0qr95jg81ag"; depends=[vegan]; }; mpmi = derive2 { name="mpmi"; version="0.42"; sha256="1j7xsgz3pgbb7a4ykrcj22isbi5svqsxcckai05q7b401h1ppsnh"; depends=[KernSmooth]; }; - mpoly = derive2 { name="mpoly"; version="1.0.5"; sha256="0yjh5nnrywxzgy24nlf5v8kq8nq10ccippzfjwf8hz7zzlxzhp5q"; depends=[ggplot2 orthopolynom partitions plyr polynom stringr tidyr]; }; + mpoly = derive2 { name="mpoly"; version="1.1.0"; sha256="1ixidhgp6bfb31kwv7gfvra47zs2f9qa3pf00qrqxkn6zgjkbspd"; depends=[ggplot2 orthopolynom partitions plyr polynom stringr tidyr]; }; mppR = derive2 { name="mppR"; version="1.1.10"; sha256="09g4zj61mh1vlhzdki7cdmbdbz6fibc7rgci9bl5vpa2cs5b3yj1"; depends=[ggplot2 igraph qtl synbreed]; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; }; mpr = derive2 { name="mpr"; version="1.0.4"; sha256="13fqvndwxzqa1safa43ad90pkiqnpqmgr0pkwp8lwmnxqmrmj0jb"; depends=[survival]; }; @@ -9368,7 +9394,7 @@ in with self; { mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.10"; sha256="138nsjcxrs3ihzscaw0cv15hkr0xnrjnjlyyf9igpcpg76d5m1bb"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; - mrgsolve = derive2 { name="mrgsolve"; version="0.8.12"; sha256="04k7mj64gqwnvwsshfn4l3iiqfbsy92qil14ysq4ncjj2h40lgkj"; depends=[BH dplyr magrittr Rcpp RcppArmadillo rlang tibble]; }; + mrgsolve = derive2 { name="mrgsolve"; version="0.9.0"; sha256="1az6n23d45jyh30y93a7rdn6vg0rx68sf30zdld6w47dfyc9kqzg"; depends=[BH dplyr magrittr Rcpp RcppArmadillo rlang tibble]; }; mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-1"; sha256="12sfyw5b1lryczl92xvyvhl37qfx3ybg4y9awsl0b7f51zi0lzy3"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; @@ -9384,12 +9410,12 @@ in with self; { mscstts = derive2 { name="mscstts"; version="0.4.0"; sha256="1gcykwnc9m3cjd0jwxmjlb4nxasaz70il2xfkr5hyxr73qkl2q7r"; depends=[httr jsonlite]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; - msde = derive2 { name="msde"; version="1.0.3"; sha256="18l5ca4s1ryyb9i0zsb03klm53f25klwyg171dqkn5z4bqwznp2m"; depends=[Rcpp RcppProgress]; }; + msde = derive2 { name="msde"; version="1.0.4"; sha256="1jyvsadkha4976vdf8nn2dbrsymr4n932cqrkmhawmy6pxa2c45g"; depends=[Rcpp RcppArmadillo RcppProgress]; }; mseapca = derive2 { name="mseapca"; version="1.0"; sha256="115njdk8cv55zxd38hq9qaca686ykckni0f3xl8w3bn32gb5g9a7"; depends=[XML]; }; - msgl = derive2 { name="msgl"; version="2.3.7"; sha256="18mcn2b7bk6z85yfmpgv8ics3fr2vbafpkn8fcnsc2amklpaplcd"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; + msgl = derive2 { name="msgl"; version="2.3.8"; sha256="0dgv44yc98qs3h1433c0v65zdg36a38mmkb35a44idln58g6xpsl"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpack = derive2 { name="msgpack"; version="1.0"; sha256="1j1nnca9nm3l1r4wjjlb15zr8p6zw1lcgyj4383ndy156bbh1f5a"; depends=[]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; - msgps = derive2 { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; }; + msgps = derive2 { name="msgps"; version="1.3.1"; sha256="0r8i0sw412jr148bid8sfpjcfbkf5589dqcqyvf5cm84cj7axnpz"; depends=[]; }; msigdbr = derive2 { name="msigdbr"; version="6.2.1"; sha256="1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg"; depends=[dplyr magrittr rlang tibble]; }; msir = derive2 { name="msir"; version="1.3.1"; sha256="1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950"; depends=[mclust rgl]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; @@ -9402,9 +9428,10 @@ in with self; { mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.2.11"; sha256="13kw1n1p2f1f0k5hkcc4732wlhiy3csx8nx2ajrgw06svzksgh3y"; depends=[RColorBrewer survival]; }; mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; }; + mstknnclust = derive2 { name="mstknnclust"; version="0.1.0"; sha256="1q7cx4yjgdvwkjfx07dywlh02zd3002165wh88aqhs3999jhnpnz"; depends=[amap igraph]; }; mstrio = derive2 { name="mstrio"; version="10.11.1"; sha256="1k407b75kfvqlvlr9wcklf81b2cby3yi6jdi5ka661n5rybcs4nn"; depends=[httr jsonlite openssl]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; - mtconnectR = derive2 { name="mtconnectR"; version="1.1.0"; sha256="068rp4n2afl9qgqrnp0a4lmnq7mq9wrc2yi361bfvib96gzg1fdw"; depends=[data_table dplyr dtw ggplot2 magrittr plyr proxy stringr tidyr XML]; }; + mtconnectR = derive2 { name="mtconnectR"; version="1.2.1"; sha256="0hl46h535mjqwgrhmxlixhfsych3blzcynffp55nr1ynrra4dn06"; depends=[data_table dplyr dtw ggplot2 lubridate magrittr plyr proxy stringr tidyr XML]; }; mthapower = derive2 { name="mthapower"; version="0.1.0"; sha256="17svh0q9a982a390fgwgvrc2kygxxgyacb3j6gcksbikjrvkcfpw"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; @@ -9412,11 +9439,11 @@ in with self; { muRL = derive2 { name="muRL"; version="0.1-11"; sha256="1pyspp1wpd80hcla1zwnl3misqggfk0ls54akwnx5aa617bibzz8"; depends=[maps stringr]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; - mudata2 = derive2 { name="mudata2"; version="1.0.4"; sha256="1lln2kc163bnwkslr6mhjjp14f92ml50558xxlmdkf8839azlra3"; depends=[dplyr fs ggplot2 jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect withr]; }; + mudata2 = derive2 { name="mudata2"; version="1.0.5"; sha256="1zr53bj8irimjnp4qnair331mcsb5jxyy7l9vz3ikigvwdgrxyv7"; depends=[dplyr fs ggplot2 jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect withr]; }; mudens = derive2 { name="mudens"; version="1.3.2"; sha256="18kv8xfmmmk0dyw64lwrlrks0gana0s7gaff6nxs59ndgb1pj6yp"; depends=[Rcpp survival]; }; mudfold = derive2 { name="mudfold"; version="1.1.1"; sha256="1lxlzzjvjqyivc8g8z6f8s0zkxf0k6mi76y5zm36r1kalhxyhkdy"; depends=[boot ggplot2 gtools reshape2 zoo]; }; mueRelativeRisk = derive2 { name="mueRelativeRisk"; version="0.1.1"; sha256="16yclfmgxc32pv00vyb9fjdh4syax8ynizr8a29haiq22q5fqclh"; depends=[]; }; - muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; + muhaz = derive2 { name="muhaz"; version="1.2.6.1"; sha256="08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; multDM = derive2 { name="multDM"; version="1.0"; sha256="06vjbsjmqdnndpqacfpgq5w8q6xg81s7vd9fhwdkww3adr7r8cg3"; depends=[]; }; multcomp = derive2 { name="multcomp"; version="1.4-8"; sha256="0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252"; depends=[codetools mvtnorm sandwich survival TH_data]; }; @@ -9452,7 +9479,7 @@ in with self; { multinet = derive2 { name="multinet"; version="2.0.1"; sha256="1gl1khr0qlx775hgzcl0462limk735apiib7awx232600flw8zqy"; depends=[igraph Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.1"; sha256="00h1nqi49mix5rxp39i46pimmr3rl0c2869g7ss8cy0kl8hl41hz"; depends=[igraph igraphdata Rcpp]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="2.0.0"; sha256="0p9dipwkqfrfdd50s002byhwrdbzwp7nj1bswf8anpzvqnd8iz1a"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="2.0.2"; sha256="0f24b0msx6y9ccdi65d8rxf589vw5rz6pxwa55bivq8cy5s4gc27"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; }; multiplex = derive2 { name="multiplex"; version="2.9"; sha256="1na0w4kzaswgzyw4wq8qmihasgbvbl426a2cx3y672l80rgjhhdh"; depends=[]; }; multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; }; @@ -9462,9 +9489,9 @@ in with self; { multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; multistate = derive2 { name="multistate"; version="0.2"; sha256="0jdgyzc99k4py39g98c4dlcdl918568ihcyhb7csxbsn1zn1qm9l"; depends=[date relsurv statmod survival]; }; - multistateutils = derive2 { name="multistateutils"; version="1.2.0"; sha256="0dngc2vyqgcck1iaf9r116r6xp65axivqq8hl6sa7ib6rgwknhkw"; depends=[data_table dplyr magrittr networkD3 Rcpp survival tidyr]; }; + multistateutils = derive2 { name="multistateutils"; version="1.2.2"; sha256="135rjk16k85g3j3dw5pzz98waw7g3ixjdbkl7gqmngndyc3mlii9"; depends=[data_table dplyr magrittr networkD3 Rcpp tidyr webshot]; }; multitaper = derive2 { name="multitaper"; version="1.0-14"; sha256="04wd9bbhyx7697pfy0fpj02v1csr48hkpqj62h9p8a6w84ji4k68"; depends=[]; }; - multivariance = derive2 { name="multivariance"; version="1.2.0"; sha256="07cm2qji04lmxkm4sqigln7rihanaww98d4k8p1rn6d62mcxyizv"; depends=[abind igraph Rcpp]; }; + multivariance = derive2 { name="multivariance"; version="2.0.0"; sha256="0nd0mf0pj3xipy0kj9v25h9qr7i3fvyd9f93w6fhipi5can81fwg"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-9"; sha256="0vbqvhmym46zjr1h4s53sjrddfjpv8wi0sq4lrh2rmqarq068416"; depends=[emulator mvtnorm]; }; multiwave = derive2 { name="multiwave"; version="1.2"; sha256="1bw071izjxrsk5gx8s49nrlryabpgpg7k2z1ghmk8p6i9m5apnl8"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-5"; sha256="0ni38h16nddwib9nvcby59rsn9913qwhrlkpdkz99fwz8cnl8rw2"; depends=[CMLS]; }; @@ -9474,7 +9501,7 @@ in with self; { mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; - munsellinterpol = derive2 { name="munsellinterpol"; version="2.1-3"; sha256="0y0ab133sh4c4avdgwjja14z290gczkzv3xlgr0lwdwhfbb60cc2"; depends=[geometry rootSolve spacesRGB spacesXYZ]; }; + munsellinterpol = derive2 { name="munsellinterpol"; version="2.2-1"; sha256="0nrh0r6a392bf4vsz6c9f7vlss7i38vvx0ic4nvyywl1fwfjslid"; depends=[geometry rootSolve spacesRGB spacesXYZ]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.11"; sha256="0wax9gjhzz8nphzwijqzllz4y25jksf1vqfcbnfb7zafsfv40rib"; depends=[]; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; @@ -9489,14 +9516,14 @@ in with self; { mvPot = derive2 { name="mvPot"; version="0.1.4"; sha256="04l9dn8amwp366b6lic5fkl4kck0x2m3xcsqz6as4c3h772nhq1w"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="1.3.4"; sha256="08nwmw5z0m6d9xx5f1cna0i0qkanr8f2vj6yicsg1k2zh1xpx0mk"; depends=[ape corpcor mvtnorm numDeriv ouch]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.0.1"; sha256="1kfdqppqnli187zxm0wm552wjsxmblr6h32q0bvcnxmwrqz22rpd"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; - mvabund = derive2 { name="mvabund"; version="3.13.1"; sha256="1z8bj9zbc8h7w1xki9sc2p2rq6lv8gbcmiy9819z54d7lx1i9cnj"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; + mvabund = derive2 { name="mvabund"; version="4.0.1"; sha256="0la935gsiryfc0zixxr1dqj0av271x96pqxbi3bp6dksbw5gm68k"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; - mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; + mvcwt = derive2 { name="mvcwt"; version="1.3.1"; sha256="1hmjps51xcjz5ahz7gxmzhpvspmbvhi0jshbv7cgly8bh294a3vf"; depends=[foreach RColorBrewer]; }; mvdalab = derive2 { name="mvdalab"; version="1.4"; sha256="18wchy517qd45w5y0sr8lcafb7kmscy0q9vsryk9if6x2jq22lqz"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-2"; sha256="00zxqby8syb959fqgw9i7b0yamgjwddq32jlin6qmnzys5bg1556"; depends=[MASS Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; }; @@ -9511,7 +9538,7 @@ in with self; { mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; mvord = derive2 { name="mvord"; version="0.3.3"; sha256="1bpm9fic5adl86c9vbix0vpyjqbd871zhl0ccaydlw2wsrx79ynq"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.0.9"; sha256="1d562h3xicq962h27fi95qhrz9vkwxk0p8axhps1cy4b49w4bygi"; depends=[robCompositions robustbase sgeostat]; }; - mvp = derive2 { name="mvp"; version="1.0-0"; sha256="19hkmzq4lx7f57xxfvh1zj0rbvaqzkpkhfhj57ij3fv87f9dvypd"; depends=[magic mpoly partitions Rcpp]; }; + mvp = derive2 { name="mvp"; version="1.0-5"; sha256="1jmb0f4xcrjmx8r31740mcf1fzpp1vwbz5virfxdwjjvphnvri40"; depends=[magic magrittr mpoly partitions Rcpp]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; mvsf = derive2 { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[mvnormtest nortest]; }; @@ -9523,7 +9550,7 @@ in with self; { mwa = derive2 { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.5"; sha256="1hb7y42fy26pv6cf235g4xx1vyvwx7chwryi7phjd2aavxffj18z"; depends=[Rcpp shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; - myTAI = derive2 { name="myTAI"; version="0.8.0"; sha256="1wgjhbf3hvhy744zmrqd2wv5bhlysrx34fklhx4car11xylnsiyl"; depends=[biomartr doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp readr reshape2 scales taxize tibble]; }; + myTAI = derive2 { name="myTAI"; version="0.9.0"; sha256="0c9avdv9j26ykrcj1gxiqmmp8qffa66mlhfvvrwdffws5yi3nv8d"; depends=[biomartr doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; @@ -9539,9 +9566,9 @@ in with self; { na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; nadiv = derive2 { name="nadiv"; version="2.16.0.0"; sha256="0pfg9hbhcjgbfmakl1jqqaf9i07i5z5jk7sh2x7x7p4354z30z9y"; depends=[Matrix]; }; - naivebayes = derive2 { name="naivebayes"; version="0.9.2"; sha256="0xmgcvvhfh7v8afi8fywaldawbx3s5hwgpvyyp2c9m6nrhw1kknl"; depends=[]; }; + naivebayes = derive2 { name="naivebayes"; version="0.9.3"; sha256="15fq757djvsyz4j07m2y0zkfhr61y5brizqmk3g1f0l4lrbw4rpm"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.1"; sha256="0wvyv54q3r4jz03jdbsmnxsinzpqcac6xjvzcrjjdzbkqfxicxal"; depends=[gmm grpreg]; }; - namedCapture = derive2 { name="namedCapture"; version="2017.06.01"; sha256="14zimn3wbavbkwra8vfmqdm1q5bmlmsbg0b29cjly5dd4zlfzzb0"; depends=[]; }; + namedCapture = derive2 { name="namedCapture"; version="2019.01.14"; sha256="18mz7ydl3mwri5qv5kpn7hnr5mwyx3mp1sd3lgsrh9iyjjzvm40z"; depends=[]; }; namer = derive2 { name="namer"; version="0.1.3"; sha256="1wsv5g50vamcz5fnbycmsjak64iyy62wl3cx8b1fjlxzlmczxfcn"; depends=[dplyr fs glue magrittr purrr rstudioapi tibble]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nandb = derive2 { name="nandb"; version="2.0.0"; sha256="0kdgljdgy84hhzrn8vab8bga2k5yg7fsy669sw5dhnsz4yjs8c0f"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr MASS purrr Rcpp reshape2 rlang stringr viridis]; }; @@ -9552,13 +9579,13 @@ in with self; { nardl = derive2 { name="nardl"; version="0.1.5"; sha256="1xi1fkwgkfc1b8qsgi4lrjx419778qk0vxzl23azcziwa6fha5p8"; depends=[Formula gtools strucchange tseries]; }; narray = derive2 { name="narray"; version="0.4.1"; sha256="09n50shk2gy1m85kmvq8g3zh2nrikpllv8gph9x2id1p62rbqf1y"; depends=[progress stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; - nasapower = derive2 { name="nasapower"; version="1.0.2"; sha256="1p99yl47l1dvyhkl38alzszbk5vs28a2zh3miqxsqmsqzmmjbsd3"; depends=[APSIM crul curl jsonlite lubridate readr tibble]; }; + nasapower = derive2 { name="nasapower"; version="1.0.5"; sha256="00xgxwn0li4dpn4hyvf8k77zv49r9jzwlinkc76a4pmy8djcfvzj"; depends=[APSIM crul curl jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; nat = derive2 { name="nat"; version="1.8.11"; sha256="1s5hbi1b20jq0qv4px0zrwsivhi2mdlqbwx4lv55mdhj447rxk1x"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; nat_nblast = derive2 { name="nat.nblast"; version="1.6.2"; sha256="0b2gzyzszj2v5girxyv31nvds0837lzvim7x7bs9h897yrxs57k8"; depends=[dendroextras nabor nat plyr rgl spam]; }; nat_templatebrains = derive2 { name="nat.templatebrains"; version="0.9"; sha256="0r0ydhxnax4x4gwp60bgarhgp59g4sis7msa3rq4kddv8qdi3gix"; depends=[digest igraph memoise nat rappdirs rgl]; }; nat_utils = derive2 { name="nat.utils"; version="0.5.1"; sha256="12g87ar795xfbz7wljksb24x9hqvcirjr50y4mbpx1427r0l7clv"; depends=[]; }; - natserv = derive2 { name="natserv"; version="0.1.4"; sha256="0qwf7lapx5gchk8xmdnmxr10j5dnkp52mqnh1ja216z7l841cl07"; depends=[crul data_table tibble xml2]; }; + natserv = derive2 { name="natserv"; version="0.3.0"; sha256="0plfcf9c1lwfmac3nnx07hyhpr12q6mfmmj0dz8xyxdspd2ps81w"; depends=[crul data_table tibble xml2]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; nbc4va = derive2 { name="nbc4va"; version="1.1"; sha256="025p9h1ghrsq4h439gx25ffpyvh2kp1i51hm7kbzx8nmh4ka8aff"; depends=[]; }; @@ -9589,8 +9616,9 @@ in with self; { negenes = derive2 { name="negenes"; version="1.0-8"; sha256="0qyhypryp3p8c876jffg1syg05b370mw24clwlx733yx86qhmb1v"; depends=[]; }; neighbr = derive2 { name="neighbr"; version="1.0"; sha256="0612nzpryj4xp0ncpvpn56x5n9ammzjp3ysq1rj1fc84h0p7nml3"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-11"; sha256="0gf9rfwz48sadl6960mpfb6a3l9n5p28yq3n0a9vz8mr57vh1dzg"; depends=[optimbase optimsimplex]; }; - neonUtilities = derive2 { name="neonUtilities"; version="1.0.1"; sha256="1qgyv96xna84fxh6cplz160xrnrca15nvj8rz1i7zdxm8g4gcxjp"; depends=[data_table devtools downloader dplyr gdata httr jsonlite]; }; - neotoma = derive2 { name="neotoma"; version="1.7.2"; sha256="0kxx1ymdy2grjmi7wb2lrk5hwrfgrlxpvhwwwkwxaqrpxmx6sk7v"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; }; + neo4r = derive2 { name="neo4r"; version="0.1.0"; sha256="0gckpfw2x1jp5vmbs226jw2638p6lv1mdhryfqpvmgha6pik51x0"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; + neonUtilities = derive2 { name="neonUtilities"; version="1.2.0"; sha256="1k80vbggz73f4pdhp6icgwclpqi6v2yhv71ykpjqs89jrxdsv7gz"; depends=[data_table downloader dplyr gdata httr jsonlite lubridate readr tidyr]; }; + neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; nesRdata = derive2 { name="nesRdata"; version="0.2.0"; sha256="1cr5d600bnslxbm2kknzwivvb4zyfsrf8rbrk3kk0j6dpclx5x6s"; depends=[dataone dplyr purrr rappdirs readr]; }; nestedRanksTest = derive2 { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; @@ -9599,6 +9627,7 @@ in with self; { netCoin = derive2 { name="netCoin"; version="0.3.2"; sha256="04fi08879yisdmkla93rvr029inwlgg5c5vz8k24d535m8k6mjhp"; depends=[haven igraph Matrix]; }; netSEM = derive2 { name="netSEM"; version="0.5.1"; sha256="0k4ngl4p1v2rp1sf2x65m7p0cd6ha98fyx21b73ki0531q0d9fil"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; + netchain = derive2 { name="netchain"; version="0.1.0"; sha256="187pgsp6dn15n9bx9sj1pjx8wyfp2cs5s89s72hclanic479pv4g"; depends=[gtools igraph Matrix Rcpp stringr]; }; netcoh = derive2 { name="netcoh"; version="0.2"; sha256="0q60hvyparlwdww6as6hcdzfs6q3n8z1rfpj53r5q2s77x6q07xx"; depends=[Matrix Rcpp RcppArmadillo]; }; netcom = derive2 { name="netcom"; version="1.0.4"; sha256="0fka14sffm0p1gldk27fd62ng05spfpbn665b4w5hdf1z4z0bs20"; depends=[clue expm igraph Matrix pdist pracma vegan]; }; netdep = derive2 { name="netdep"; version="0.1.0"; sha256="0mrbqn5d8iqvs98a0kski0vya135z7l902xafya96s2h288jchx7"; depends=[igraph igraphdata MASS mvrtn]; }; @@ -9639,18 +9668,19 @@ in with self; { ngspatial = derive2 { name="ngspatial"; version="1.2-1"; sha256="1c65ws9b9s2grr44lqg8026c4p2875d0426dfmrakpb44mw2zppp"; depends=[batchmeans Rcpp RcppArmadillo]; }; ngstk = derive2 { name="ngstk"; version="0.2.3"; sha256="0196hnbqw9bji3bl2phjs9z5n84x5fs7iiirfd6gjyqv9xlfwd2p"; depends=[configr data_table future optparse stringi stringr]; }; nhanesA = derive2 { name="nhanesA"; version="0.6.5"; sha256="0bb53s379qrm8xqp4bsi5vgk6v6hvwadzjv09pvdp1n45z7rqj86"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; + nhdR = derive2 { name="nhdR"; version="0.5.0"; sha256="1kh67d8h4w6kil4gjx0jm8l956lpqh4fw1aw8ac4fafqnyggpsdk"; depends=[curl dplyr foreign gdalUtils ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; nhlscrapr = derive2 { name="nhlscrapr"; version="1.8.1"; sha256="107k063279w9cy6in99rn03w2rq42ci8s6dvb9x6f9w7y3bdpvzn"; depends=[biglm bitops RCurl rjson]; }; nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; nilde = derive2 { name="nilde"; version="1.1-2"; sha256="07m52c4gw0vcyb6pya5z7m4y1kiy2zvh0gnhp80hxc7nhyx0rnqd"; depends=[]; }; nima = derive2 { name="nima"; version="0.5.0"; sha256="1xpzq1mg2l9hnh83hbmxcqz3v0ai62ii7k688i8lpj0xnpsm25pl"; depends=[assertthat devtools ggplot2 ggthemes gridExtra gtools plyr ProjectTemplate scales survival]; }; - nimble = derive2 { name="nimble"; version="0.6-12"; sha256="1vgyqrcki9z60sxqfyj6smqrq2422g9g95fv5gmmqiwqiv89blxj"; depends=[coda igraph R6]; }; + nimble = derive2 { name="nimble"; version="0.7.0"; sha256="0zkgj0j56x43bpifm1ixp30yrc1hkhymrfn5x5d18k0n4sv5n6k6"; depends=[coda igraph R6]; }; nipals = derive2 { name="nipals"; version="0.5"; sha256="1zrn1ykl9scd988wj3mm0j6g5q6lq04iwn2ibgap1lrsd0rw1zbf"; depends=[]; }; nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; - nlaR = derive2 { name="nlaR"; version="0.3"; sha256="1s54dpz6z7pgj6jn0jjx8s1m318fbk6ra8wrzfvfbz9bcvgp0i2m"; depends=[rappdirs]; }; + nlaR = derive2 { name="nlaR"; version="0.4.0"; sha256="05ipw2j4w5r3bpmhqh742yqz5qihx36jnsq08bli8jwsqha9vm8h"; depends=[rappdirs]; }; nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; }; nlgeocoder = derive2 { name="nlgeocoder"; version="0.1.3"; sha256="13d30kfgfsny5gnn3yjfnclky6yixaa8sg0m689rszqxrvbrj79x"; depends=[jsonlite]; }; @@ -9663,7 +9693,7 @@ in with self; { nlnet = derive2 { name="nlnet"; version="1.2"; sha256="00lcyz5csjj9qbhh7yw0qlbnyv32k0c2dpm23v04n9wkdgs67jy0"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; nloptr = derive2 { name="nloptr"; version="1.2.1"; sha256="15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz"; depends=[]; }; nlr = derive2 { name="nlr"; version="0.1-1"; sha256="12j2hp5fgpdz7pvlpykhf9zp1sw1f6vzhh5ykk9b2diaf3l55zsl"; depends=[GA MASS nlme quantreg robcor TSA tseries]; }; - nlreg = derive2 { name="nlreg"; version="1.2-2.1"; sha256="08pz3qycnsvz175ppj23i2i0wcif6imi6fc117n8802ln3npwm64"; depends=[statmod survival]; }; + nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; nls_multstart = derive2 { name="nls.multstart"; version="1.0.0"; sha256="08zdyx5hp1xbqjspk0f89fca5gc0b5j87hsccvn9dxn2lrnwk8nb"; depends=[dplyr minpack_lm purrr tibble tidyr]; }; nls2 = derive2 { name="nls2"; version="0.2"; sha256="0k46i865p6jk0jchy03jiq131pc20h9crn3hygzy305rdnqvaccq"; depends=[proto]; }; @@ -9679,7 +9709,7 @@ in with self; { nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="0.1.2"; sha256="0layk1pqry2g3xiwmasrnsvmw91sgg7iz15d6iz6hbq4za61hr0k"; depends=[]; }; - nmathresh = derive2 { name="nmathresh"; version="0.1.3"; sha256="09pxbizmvdp2l5j1gs0v3xk2lsyclx5rndaw6b4ccn61m3x060ls"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; + nmathresh = derive2 { name="nmathresh"; version="0.1.4"; sha256="0nsywahzph06c7grk3ch65fvll4ninqz97y007d6qdqgmym9vxjq"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; nmfem = derive2 { name="nmfem"; version="1.0.3"; sha256="1v808k25g0ph1wvx1j89izfxy9szn0m4sf965d8nkygrk184i9gj"; depends=[d3heatmap dplyr mixtools plyr tidyr]; }; nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; nmixgof = derive2 { name="nmixgof"; version="0.1.0"; sha256="0cbwrsxrcf8pn4ycn6r0z8jdidw5l6kdvwyrks69fq4pjzx988d6"; depends=[Rcpp unmarked]; }; @@ -9689,7 +9719,7 @@ in with self; { nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nnet = derive2 { name="nnet"; version="7.3-12"; sha256="17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"; depends=[]; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; - nnfor = derive2 { name="nnfor"; version="0.9.2"; sha256="1wxv8s5547spw155rj7nlilsfn5d7m40xpfy87mady93n25pwm3d"; depends=[forecast glmnet MASS neuralnet plotrix]; }; + nnfor = derive2 { name="nnfor"; version="0.9.6"; sha256="0bciy6k79g7abvj3pmmdc4wzg5mp11zgmdbx17x4by993p2clhw9"; depends=[forecast glmnet MASS neuralnet plotrix tsutils uroot]; }; nngeo = derive2 { name="nngeo"; version="0.2.4"; sha256="0yfspirrrcz50ry0k66a6icmvsv07rdgxz8s8cp9zsxxqj0jad6g"; depends=[lwgeom RANN Rcpp sf sp units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; @@ -9701,20 +9731,20 @@ in with self; { noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; nomclust = derive2 { name="nomclust"; version="1.1.1106"; sha256="17hb89k72sw3ya0wm3n95mpx4vj7mpl4mzs8qwl2773dh2mcjgjq"; depends=[cluster dummies]; }; - nomisr = derive2 { name="nomisr"; version="0.4.0"; sha256="1ns05jpq20ql3pqandfil7zln4b9lls4vpscnaai3mxf9434ga9x"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; }; + nomisr = derive2 { name="nomisr"; version="0.4.1"; sha256="0a94s1xqij6k2kkzdzxp5837qgv9czzgl6wp0z9a95xizy3hkjsx"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; noncensus = derive2 { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; - nonet = derive2 { name="nonet"; version="0.3.0"; sha256="067h2zpgyqilr0hkqbca73brrxljjd53dkyll152d6b5q6ysm0l8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; + nonet = derive2 { name="nonet"; version="0.4.0"; sha256="1043vplj8libbzll172h82dfwnz2lsdba5na2g9liryg8p08h4v8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.5"; sha256="0vpa8r8b7j2d19da49cw4jg8zm74kvg9npwf4aqwxw8ndkfgpyj0"; depends=[Matrix Rcpp RcppArmadillo rgl TSA tseries zoo]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.1.10"; sha256="05ipdkvryx21kqc2kajy1xmpd9w33k8w0z6zq786kp9ks76pmfrb"; depends=[ggplot2 lattice latticeExtra MASS mvtnorm splines2]; }; - nonmemica = derive2 { name="nonmemica"; version="0.8.3"; sha256="07n6cz2vlg5mk0wvbi86j2v9v12vxpll6zkc6f4nf7cb700r9kwa"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; + nonmemica = derive2 { name="nonmemica"; version="0.8.6"; sha256="1h3spkii3lljw32hcbvmjyrpfi7hzpabl15pab4xr80q6yl97ci7"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; + nonneg_cg = derive2 { name="nonneg.cg"; version="0.1"; sha256="1yfwj4sxfh61pqjkm00ad4qyqb4wkdh7g9pi7aybmjljfjrdvg9p"; depends=[Rcpp]; }; nonnest2 = derive2 { name="nonnest2"; version="0.5-2"; sha256="1bq44qqmm59j91m0sny4xnqmxqlga4cm48qdsw8xfs3x19xwmxk6"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; nonpar = derive2 { name="nonpar"; version="1.0.1"; sha256="0pxks3nga7jrcvq0pzr1axj3a9xvzky836fl7966a09ws1vff7i4"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; - nonrandom = derive2 { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; nopaco = derive2 { name="nopaco"; version="1.0.3"; sha256="1sbjgzd7q2gjhs5qsy23w30cv73d9d6g08ymq18wppqpir5hikh2"; depends=[Matrix]; }; @@ -9728,7 +9758,7 @@ in with self; { normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; - norris = derive2 { name="norris"; version="0.1.0"; sha256="1y90m9k18y0cm5rgkq1ny0d1sc14z87srlwqv99ppn1fg4r21k37"; depends=[dplyr httr jsonlite stringr]; }; + norris = derive2 { name="norris"; version="0.1.1"; sha256="07pflm5nc9rxi5zvi394c9y8h9hmhsvn4ya4ghlr9y6yxzwrz0l1"; depends=[dplyr httr jsonlite stringr]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; }; @@ -9754,17 +9784,17 @@ in with self; { nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; npmlda = derive2 { name="npmlda"; version="1.0.0"; sha256="1dr25an7cac89jyb8zhmj3ry6lq7sh7zxci1injplnk4gzy17mc5"; depends=[]; }; npmlreg = derive2 { name="npmlreg"; version="0.46-5"; sha256="1f0bzccmral2y56aih37gmi6mjww6wmp2a8z6yxm501fgj2lgzfc"; depends=[statmod]; }; - npmr = derive2 { name="npmr"; version="1.1"; sha256="1ss8ypvv6qcdxv7l3szivliwmhidmzi3572p3nz96ysndf56akl4"; depends=[]; }; + npmr = derive2 { name="npmr"; version="1.2"; sha256="073i9zcnyp8l5fxblx2sfyn0b4lr6i595q6kl6ispvzmylwqj8na"; depends=[]; }; npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; npordtests = derive2 { name="npordtests"; version="1.1"; sha256="1g8s9nmqqawq65hvpg82c78l3ffsih057665hw98mkipqb9r0vs5"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; }; npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; - nprobust = derive2 { name="nprobust"; version="0.1.3"; sha256="1zr89myhamcxzk7j04rxcc4mbi86pf09kl70p8niklm0b3wmsjzj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + nprobust = derive2 { name="nprobust"; version="0.1.4"; sha256="0ndn1a54i7zk7ixyimm1jdviz3x5l3qa0rpgsdd30jqv8fldfjpz"; depends=[ggplot2 Rcpp RcppArmadillo]; }; nproc = derive2 { name="nproc"; version="2.1.4"; sha256="1gj38yppip0ygxcgp0x9ba9kpr12ahmz2k0956x3h7py2rl8b098"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; nprotreg = derive2 { name="nprotreg"; version="1.0.0"; sha256="06n82i5m7sgfj759zdwwh8fqybkbchvnaaqcds64m6hbms592bh3"; depends=[expm]; }; npsf = derive2 { name="npsf"; version="0.4.2"; sha256="1j6mnip3qa1fgvr9smprz2fmmhmcm17vk85y56lf2xjljhpd0wrm"; depends=[Formula Rcpp]; }; - npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; + npsm = derive2 { name="npsm"; version="0.5.1"; sha256="00xh3x731lqb5vbzmfmlldrvc8s4s88dc394iifsn2g7r5naxks0"; depends=[plyr Rfit]; }; npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; }; npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; }; @@ -9825,6 +9855,7 @@ in with self; { ocp = derive2 { name="ocp"; version="0.1.0"; sha256="0glcnrk0mpff5rp9q6hn0j8vly1gls728irj2pxfizas1wmdc5q2"; depends=[]; }; odbc = derive2 { name="odbc"; version="1.1.6"; sha256="146phrsks0hfd1bfxx452kkq7ximk3fwjz9lqg9fdykar5sr6vjj"; depends=[BH bit64 blob DBI hms Rcpp]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; + odds_n_ends = derive2 { name="odds.n.ends"; version="0.1.0"; sha256="1xq0wfj6plg4aircb2qsxsy3wbwvc7zkkwgywr5n9n5r1r2csyps"; depends=[MASS]; }; oddsratio = derive2 { name="oddsratio"; version="1.0.3"; sha256="1kdqnai8hbhxg9gjn9j7zgm8mw4bd765jkdrwrk9q65fpvc62f5k"; depends=[cowplot ggplot2 MASS mgcv]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; @@ -9849,19 +9880,19 @@ in with self; { oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onemap = derive2 { name="onemap"; version="2.1.1"; sha256="0j9c0ynwpzyr548n72wzmmk8gi52qvxlxgzqzn8g6n4v5zmzlkhy"; depends=[fields ggplot2 maps Rcpp reshape2 tkrplot]; }; - onewaytests = derive2 { name="onewaytests"; version="1.9"; sha256="15zs39krrf7i5g0bp830il3cihwbichsd6swhjxp53j77hwcb0hy"; depends=[car ggplot2 moments nortest]; }; + onewaytests = derive2 { name="onewaytests"; version="2.0"; sha256="0q3njwqdp33bdj9shr1jyrzrz6dqvg4dj90qxgyvj6iifsjrvpdl"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.2-7"; sha256="17jx7saxcsahyyivln4v9fzzcmidy6ygjd9n81skv5jpr491zkgk"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-0"; sha256="1hqriwrlxhbi5v5wpqxfvvcb6np1iaarb3zf84ykfzi4llqqgz24"; depends=[lattice]; }; onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; }; onnx = derive2 { name="onnx"; version="0.0.2"; sha256="0gyyaplq20cb0bilnmx0k2cm7yzrfvwsawdzs0bha1p5b83l003v"; depends=[reticulate]; }; - ontologyIndex = derive2 { name="ontologyIndex"; version="2.4"; sha256="168m4jdwbzv8lpimx9063306691hnfdjmdhb5y8195d9vcq049jr"; depends=[]; }; + ontologyIndex = derive2 { name="ontologyIndex"; version="2.5"; sha256="127hlf0z5fmbgnq4p9h8nvn6p72d2fpcn846zzb99s213421jnry"; depends=[]; }; ontologyPlot = derive2 { name="ontologyPlot"; version="1.4"; sha256="0sj1jg9lr1w3ahzw7fj86vp2bnvf4nq0x3hiqb3hzngwyj9bykpn"; depends=[ontologyIndex paintmap Rgraphviz]; }; ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.2"; sha256="1g1ag2bnfczdx2xyswrc9xbl9krnyibb4639wynm7c0lf2876964"; depends=[ontologyIndex Rcpp]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.6"; sha256="0lighs2546nyhpgbjsn4k53c7jw6xyla5b82v8jp3l1sqxj68a3s"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; - openCR = derive2 { name="openCR"; version="1.3.2"; sha256="0f5m3gnx0x8vqcdzvjrmlv2f1vcq7c760bv7xkcxksjqhwwgjisa"; depends=[abind MASS nlme plyr Rcpp RcppParallel secr stringr]; }; - openEBGM = derive2 { name="openEBGM"; version="0.7.0"; sha256="1a4jcc15995id2fh22v18f1wrwlknfx3mlh6chjl0b93z60aad6k"; depends=[data_table ggplot2]; }; + openCR = derive2 { name="openCR"; version="1.3.4"; sha256="1mllnmq47g43zchvf663dbhzj7pqzx687hbl4n0891m5jqbigbaj"; depends=[abind MASS nlme plyr Rcpp RcppParallel secr stringr]; }; + openEBGM = derive2 { name="openEBGM"; version="0.8.0"; sha256="10fqjc3l06barkvflbkzy6jx37kp4lyhsj52aprd98fqm9y62dwm"; depends=[data_table ggplot2]; }; openNLP = derive2 { name="openNLP"; version="0.2-6"; sha256="1173cng877sg6ynbs3csfnn956wwrq3yldhhzfbqdsz35draganj"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-4"; sha256="0j45rh9qki8r5wavaysrfsvb3wc3x8jjicqff2yi0r34j58xvlv8"; depends=[rJava]; }; openSTARS = derive2 { name="openSTARS"; version="1.1.0"; sha256="1cjws49r22cmdax136zcy3k35yzbajkm6pyfibgcw2iqdxy1vcxg"; depends=[data_table progress raster rgdal rgrass7 sf sp SSN]; }; @@ -9872,7 +9903,7 @@ in with self; { opencpu = derive2 { name="opencpu"; version="2.1"; sha256="1w4lqvzn05v3qkxzd22mcsmkk5n1472yc58vyvlfg6vxml0nykry"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sendmailR sys webutils zip]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; openintro = derive2 { name="openintro"; version="1.7.1"; sha256="059azlasdkmp8f54qpjf3mq5dyqakw0dgx0kx85wfdmhq38zal5n"; depends=[]; }; - openssl = derive2 { name="openssl"; version="1.1"; sha256="0ldxgcr33lawwr8wp14kdk2678gpkvqkzv6g333bhck1hn6qspzv"; depends=[]; }; + openssl = derive2 { name="openssl"; version="1.2.1"; sha256="0ypa41qr58jgipzkqn3wjqdsjyi7qk57i46s5wy88xy3j8jl9jkv"; depends=[askpass]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; openxlsx = derive2 { name="openxlsx"; version="4.1.0"; sha256="1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"; depends=[Rcpp zip]; }; opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; }; @@ -9892,7 +9923,7 @@ in with self; { optiSolve = derive2 { name="optiSolve"; version="0.1"; sha256="1wnpj7z0vqf91gzgz6r2ympnljq4mczxnnyk3sq7gvf6df4ic2m1"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp Rcsdp shapes stringr]; }; opticut = derive2 { name="opticut"; version="0.1-2"; sha256="1j479wa7mlp62c2y7shha1w7ybhfy8wvjfaz27kmwd1f61ma1g0l"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; - optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; }; + optigrab = derive2 { name="optigrab"; version="0.9.2.1"; sha256="1c3q4kx8rkgpjsy0hy2w2dd9kv51avnw1ab82hzmjgngfnvaig0n"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; optimParallel = derive2 { name="optimParallel"; version="0.7-4"; sha256="0415lz5qrhb423h55plws1hjf1fsddg2qf9phm1srvd24dvz2khw"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="1.1"; sha256="0wlkk0wmhzkxkam0d6lzr5s6hyb51fnvvd64syffgr084ivxymra"; depends=[shiny]; }; @@ -9907,12 +9938,11 @@ in with self; { optiscale = derive2 { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; optismixture = derive2 { name="optismixture"; version="0.1"; sha256="0nacfbqlnzajp1hfhf0yzm2d86fxpp4kw2zy33q8k2d4sr56bird"; depends=[Matrix mvtnorm]; }; optmatch = derive2 { name="optmatch"; version="0.9-10"; sha256="1jnvk9r7jc8w5rg8xvhbhj0wmy0l1hhjm8iwyf703939p4xc5z71"; depends=[digest Rcpp RItools survival]; }; - optparse = derive2 { name="optparse"; version="1.6.0"; sha256="1d7v5gl45x4amsfmzn5zyyffyqlc7a82h01szlnda22viyxids0h"; depends=[getopt]; }; + optparse = derive2 { name="optparse"; version="1.6.1"; sha256="04vyb6dhcga30mvghsg1p052jmf69xqxkvh3hzqz7dscyppy76w1"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; - optrdd = derive2 { name="optrdd"; version="1.0.2"; sha256="04c0dz68bs9h7l7bw9l0fahbbr2d0472xcq23pj91c8953n2mkak"; depends=[CVXR glmnet Matrix quadprog]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; - optweight = derive2 { name="optweight"; version="0.2.0"; sha256="0qpm5i9anzmv03cgdpk3r7pr6gg9l32hrnbrrd65cmkvf5wdxcyj"; depends=[ggplot2 Matrix rosqp]; }; + optweight = derive2 { name="optweight"; version="0.2.1"; sha256="1rg3lpjdbx30mkhdf8hyrkcpxl1kbc2iy512svg3ds0b1zk3s46i"; depends=[ggplot2 Matrix rosqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; @@ -9925,14 +9955,15 @@ in with self; { ordcrm = derive2 { name="ordcrm"; version="1.0.0"; sha256="1hy24s23l099b21w5j3p2f0748s8xmhxhslfp65fg7ycwda5qsyw"; depends=[rms]; }; orddom = derive2 { name="orddom"; version="3.1"; sha256="165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"; depends=[psych]; }; orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; }; - orderedLasso = derive2 { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[ggplot2 Iso Matrix quadprog reshape2]; }; + orderedLasso = derive2 { name="orderedLasso"; version="1.7.1"; sha256="1qywvvdbxjqq886i1gd1hsxx92zm7lbalm0acylabap5m2nf9q53"; depends=[ggplot2 Iso Matrix quadprog reshape2]; }; ordering = derive2 { name="ordering"; version="0.7.0"; sha256="0sgwgcjg6sazmi11c9qvxfrzg671kcp18i2q20xbmbj4v3yqhwbh"; depends=[]; }; orderstats = derive2 { name="orderstats"; version="0.1.0"; sha256="0a3ga0cjryvbininspsx5wzc96s3fza06s3d5fhbllbixz0rap4a"; depends=[]; }; ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; ordinal = derive2 { name="ordinal"; version="2018.8-25"; sha256="03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h"; depends=[MASS Matrix numDeriv ucminf]; }; ordinalClust = derive2 { name="ordinalClust"; version="1.3.1"; sha256="10wk2brp8a3k1pjsl7wify4ki59ad4vbpqgmbi5va99hfnywz5ml"; depends=[Rcpp RcppArmadillo RcppProgress]; }; ordinalCont = derive2 { name="ordinalCont"; version="2.0.0"; sha256="17n04v182nxzkhvlgyasl7lfy8ggwkijsvyykdsdd9ii1vaw3l7s"; depends=[boot Deriv]; }; - ordinalForest = derive2 { name="ordinalForest"; version="2.2"; sha256="1cfcdk7nndw7z1shq966pdk6448hdvfqc6c1z4fwrrlkp75gnjr5"; depends=[combinat ggplot2 nnet Rcpp]; }; + ordinalForest = derive2 { name="ordinalForest"; version="2.3-1"; sha256="1yhaq6bg9npxsc9v6v9viqlwyrpdag1hy0z25h10cfygg8h1ranl"; depends=[combinat ggplot2 nnet Rcpp]; }; + ordinalLBM = derive2 { name="ordinalLBM"; version="1.0"; sha256="1sfzkm3f9s5nbalakgk5v919wr7hdlr5p280rw2p8dy4wxr3xk3s"; depends=[RColorBrewer reshape2]; }; ordinalNet = derive2 { name="ordinalNet"; version="2.5"; sha256="1lx8jacidb6irwb2mwsc75dy90fnvrpgwcg8s2wzkvql1lasc6wy"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.0"; sha256="07gihg8hppxa7bp5wxcshqawj3vkzicmdsrnjyrasr3glv08b9lj"; depends=[rjags]; }; ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.5"; sha256="0i66i0qwsc52yj4hpfzk4d8v2nwdd4zr7zgqlxvsk3n8vi65lnqf"; depends=[survival]; }; @@ -9949,7 +9980,7 @@ in with self; { oro_nifti = derive2 { name="oro.nifti"; version="0.9.1"; sha256="19w9dzyfmfgxgxb5i0l06b6gzqksx879iwicfs76fwmb1q2ph540"; depends=[abind bitops RNifti]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.6"; sha256="1dczii7knh9241ksswxk9zg1d69mhk2ilrk4kjv7cj9nfm8fgmja"; depends=[minpack_lm msm oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.1.1"; sha256="1js4q2s1mn263x8szl5q47ajfxv9lsjd5zyphwyhbkqrnd8ijd3w"; depends=[sp]; }; - orsk = derive2 { name="orsk"; version="1.0-4"; sha256="0gbr758bnb4bpn0ndv3hkk1ny7kj5vc0w5hp540xc0g1car43ynw"; depends=[BB BHH2]; }; + orsk = derive2 { name="orsk"; version="1.0-5"; sha256="19bpvsdjwjm62a2kfh3xjpqnn39kls656kh832frkqa08bdd7zjk"; depends=[BB BHH2]; }; orthoDr = derive2 { name="orthoDr"; version="0.5.1"; sha256="0zpi3g6pkid40cblzsxck254wxljn5bfs354l51xfb182qr76x6k"; depends=[dr MASS plot3D pracma Rcpp RcppArmadillo rgl survival]; }; orthogonalsplinebasis = derive2 { name="orthogonalsplinebasis"; version="0.1.6"; sha256="07rbd0fhs2gsk7wj41y2h7wf6pfg324vzv2al753d8kqyx5ns2dj"; depends=[]; }; orthopolynom = derive2 { name="orthopolynom"; version="1.0-5"; sha256="1gvhqx6jlh06hjmkmbsl83gri0gncrm3rkliyzyzmj75m8vz993d"; depends=[polynom]; }; @@ -9962,8 +9993,8 @@ in with self; { osmose = derive2 { name="osmose"; version="0.1.1"; sha256="0fiijnrvvydhj6j9yb02rn5sg8arcpj3jz977m2zwjgqy878cffg"; depends=[rlist stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.2"; sha256="0k5rjxsi1sfcxcl6lf8zcncqnshz2jaz7hcwn2ifg4yhvxvkfma8"; depends=[curl e1071 ggm ggplot2 httr mapproj osmdata rgeos sp spatstat]; }; osqp = derive2 { name="osqp"; version="0.5.0"; sha256="12gm5mhmnzvfmziiln0lnqs173gan10ihwkcj07dcjii4nvkg4p9"; depends=[Matrix R6 Rcpp]; }; - osrm = derive2 { name="osrm"; version="3.1.1"; sha256="14rf5m2pm5w414v2l1dvd6vlvirms93l8rkfbmgcvxwxmc52b187"; depends=[gepaf jsonlite raster RCurl rgeos sp]; }; - osrmr = derive2 { name="osrmr"; version="0.1.29"; sha256="1mkc39v56m7b89nbjzs50kzz8w1i1950gciiw7iyqpdj6g2knwdx"; depends=[assertthat bitops R_utils rjson stringr]; }; + osrm = derive2 { name="osrm"; version="3.2.0"; sha256="17c880x4d81wzrs867icbhwvm7y48ljy99yqjjm37a2ihz61vhw4"; depends=[gepaf jsonlite raster RCurl rgeos sp]; }; + osrmr = derive2 { name="osrmr"; version="0.1.35"; sha256="1pmsybyqkgpqz0yhfmwrsa2smgmclxzk9mlzcqmm8ph6dcd1x0s8"; depends=[assertthat bitops R_utils rjson stringr]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; otrimle = derive2 { name="otrimle"; version="1.1"; sha256="0c3wlj6cxpikrfr0knldd1z2kfihpfsppnyb9n3rflnxhk7pwij2"; depends=[doParallel foreach mclust]; }; otuSummary = derive2 { name="otuSummary"; version="0.1.0"; sha256="15sjjkivh37kjcj02s2l8xabn3x1kg348i69kyhbvsbqawh2s9y0"; depends=[fossil reldist reshape2 vegan]; }; @@ -9971,13 +10002,14 @@ in with self; { ouch = derive2 { name="ouch"; version="2.11-1"; sha256="0xkwwi62vdahlcg3k32zb1nfwsx87zdssk79mvcxgfsw9bw4gahx"; depends=[subplex]; }; outbreaker = derive2 { name="outbreaker"; version="1.1-8"; sha256="0przz78jzkwl580w83p0aigaykfki2hdzprwqic7dy6yxnpqlpm3"; depends=[adegenet ape igraph]; }; outbreaker2 = derive2 { name="outbreaker2"; version="1.0.1"; sha256="1v49i9z4kx9l485ib5q91s4z6r03lyijzjrr9zyjgham59rncyij"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; - outbreaks = derive2 { name="outbreaks"; version="1.3.0"; sha256="1k0g9x6wvdw8lkpjiv8z1ijp6pg5hri3gawx7zfpnm05g6ncvg81"; depends=[]; }; + outbreaks = derive2 { name="outbreaks"; version="1.5.0"; sha256="00369lnh65nfkcbjd5i39irdv2hcwy5cinb2dvv2x4c2q2ax9f0d"; depends=[]; }; outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; overlap = derive2 { name="overlap"; version="0.3.2"; sha256="1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.5.2"; sha256="1scdbs9xz9xbnavg4by5zcbxrd9ckhn9dv35szr8phx10604a60n"; depends=[ggplot2 testthat]; }; - overlapptest = derive2 { name="overlapptest"; version="1.0"; sha256="1p5xbqbl1kpvx7rjb335k7hfc8i9b13p2r2rr6rrjfa8zs74smml"; depends=[spatstat]; }; + overlapptest = derive2 { name="overlapptest"; version="1.1"; sha256="0r732za6lm7dk5r237nhadgbpinaz5dmb6f7pn3mbg0plkdy3mff"; depends=[spatstat]; }; + overture = derive2 { name="overture"; version="0.1-0"; sha256="0iczf2dfxm1jn9k8ywdinhh42rbjva8f73rxz3w2xmspwqyg6f08"; depends=[bigmemory]; }; owmr = derive2 { name="owmr"; version="0.8.1"; sha256="11krzrkr1ga41nv9c2fb8cb2mgy3ias7qx85d4cdv4k68lsksv18"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; ows4R = derive2 { name="ows4R"; version="0.1-0"; sha256="1a27h63spy46ms7fgh2vl659znp5g55d1hsk6py6lgfa6hc2f1dx"; depends=[geometa httr openssl R6 rgdal sf XML]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.0.0"; sha256="19inf2bcpfj4jzfym1v5f1w5fkmcycz5jrfc2hf0wsvixy53lfxa"; depends=[jsonlite stringr]; }; @@ -10022,17 +10054,18 @@ in with self; { pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; - pairwise = derive2 { name="pairwise"; version="0.4.3-2"; sha256="1kb73jsfyp1daqbrmpwh8l9j28fgiapimfwdypz82m46wza1qgww"; depends=[]; }; + pairwise = derive2 { name="pairwise"; version="0.4.4-5.1"; sha256="0j15qbpym0y9ipc4l3z95f0bzc0pgzayspyqv81p7xakksnj2y02"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-26"; sha256="0dislkyvzckkxl2ccdpalyfbp4pfs6yvzwr175h2xcbzm5jjf35j"; depends=[boot coin MASS MCPAN mcprofile]; }; palaeoSig = derive2 { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; }; - palasso = derive2 { name="palasso"; version="0.0.2"; sha256="19syj2qlmnrbz75hhlrslh04k8cmi3bh8r15yq8gwy1mr9kwq3i3"; depends=[CorShrink glmnet Matrix survival]; }; + palasso = derive2 { name="palasso"; version="0.0.2"; sha256="19syj2qlmnrbz75hhlrslh04k8cmi3bh8r15yq8gwy1mr9kwq3i3"; depends=[glmnet Matrix survival]; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; paleoTS = derive2 { name="paleoTS"; version="0.5-1"; sha256="18f5lkgzvndc8s7w7d7dfdlqf37adrmzabpwkavjw1zkpb1dga8c"; depends=[doParallel foreach iterators mnormt]; }; paleobioDB = derive2 { name="paleobioDB"; version="0.5.0"; sha256="195w0jzg8bhlqbsd3shi161wqr9cff6q85ik0x8w4laazzxs0jhr"; depends=[gtools maps plyr raster RCurl rjson scales]; }; - paleofire = derive2 { name="paleofire"; version="1.2.2"; sha256="0mg03k3yf68js580ljvwcn7xfl0m1s408hb34a9h3mh3a5knm2zc"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; + paleofire = derive2 { name="paleofire"; version="1.2.3"; sha256="0psmkcfyr71dzb0ja0ir5ppy74dw2gladhisammsn4cb1zsarpl8"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; paleotree = derive2 { name="paleotree"; version="3.1.3"; sha256="05669s0lmd9azzpgn5iqayp49lg6sn34z4bqizcbpjviw6jwh72c"; depends=[ape phangorn phytools]; }; - paletteer = derive2 { name="paletteer"; version="0.1.0"; sha256="02d0k74bxdjphw34v4vvnc2dd04cvm9y6m0x8ngfhqmgv4nfsjx9"; depends=[ggthemes jcolors oompaBase palr pals rlang scico viridisLite]; }; + paletteer = derive2 { name="paletteer"; version="0.2.0"; sha256="0sdb92z8hzbjpx0yl0zaylhbznvyax3z2lkanhzx51xkfm782b3n"; depends=[gameofthrones ggthemes harrypotter jcolors oompaBase palr pals rlang scico viridisLite]; }; + palettesForR = derive2 { name="palettesForR"; version="0.1.2"; sha256="0nkb0dszj3a9ba7w6kfyn8lxacqsjw60i87p3g2gyl098kjwv7qv"; depends=[]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; palm = derive2 { name="palm"; version="1.1.3"; sha256="1w13a1517h9dqfkc0863fsb08mapx8cafypk3b61djh69hcpbl0v"; depends=[gsl minqa mvtnorm R6 Rcpp spatstat]; }; @@ -10043,17 +10076,17 @@ in with self; { pamm = derive2 { name="pamm"; version="0.9"; sha256="01dv70ca3zif2b2fkx4xjl24x9p9kc63wf0dj5agdjp5qgbkp1p5"; depends=[gmodels lattice lme4 lmerTest mvtnorm]; }; pammtools = derive2 { name="pammtools"; version="0.1.8"; sha256="1lh8z956wayl2hkvpvwqnm156zw7bqph0hpafgm5wz5xcwaqrgj0"; depends=[checkmate dplyr Formula ggplot2 lazyeval magrittr mgcv msm mvtnorm purrr rlang survival tibble tidyr]; }; pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; - pamr = derive2 { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; }; + pamr = derive2 { name="pamr"; version="1.56"; sha256="03h1m5fkw76jjln1psdb7x913a499ghf7n48rcd8damr5vdyf961"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.3"; sha256="1bd9sdghlsppmff18k5fg3i0visq9f4wc82rlhwq5m82bmgdgnyi"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-1"; sha256="18n155rkbr3gq5lsb0bh1v1v0z0r6xr2ald3nh7xh3v9qwxpmsz1"; depends=[jsonlite]; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; panelView = derive2 { name="panelView"; version="1.0.5"; sha256="1hmb311qimm60l9zvk0nkgh4qy2givm8a8rdmmpfb9bfbbg6clks"; depends=[ggplot2 gridExtra]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; - panelvar = derive2 { name="panelvar"; version="0.5.1"; sha256="1394lvvpzbcvm2mhxw68k784jyvsnzxiq787kdf4y4538lqgfx1n"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; + panelvar = derive2 { name="panelvar"; version="0.5.2"; sha256="1rr7d0cyz6afxhwqslvcnbfb03cizpfldzwsfnkzxqmxpqasbw80"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="0.6.0"; sha256="0dykacf5ckhck08rbk6l5kyw51i2p1ncy44agcxj79cr290cd5ck"; depends=[crul jsonlite oai png rappdirs tibble xml2]; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; }; - papeR = derive2 { name="papeR"; version="1.0-3"; sha256="0c3zziy32wnpvnv7d3kh1gs24pmy9ap2hq0l3ss2h79s5vmc76xi"; depends=[car gmodels xtable]; }; + papeR = derive2 { name="papeR"; version="1.0-4"; sha256="1sc336haqsx6825g7m0z3a4pjklrmnzkq4995dpqwhvdvcikk9jd"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parSim = derive2 { name="parSim"; version="0.1"; sha256="15d3k91mvbv2hmq0l1jfr0hsv2zkz3cr6axg85kf9bd9q79b85qp"; depends=[dplyr]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.4"; sha256="0gqf9vi9hlbflxj941jv7hli8jiy2sqg8b312h401f8rkfqa9ckv"; depends=[Rcpp RcppArmadillo RcppParallel]; }; @@ -10071,20 +10104,21 @@ in with self; { parcor = derive2 { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; }; parfm = derive2 { name="parfm"; version="2.7.6"; sha256="1n548gaf62m56n8rlcz1mhpqxikd33vydjwl4wps441drp1dbvs0"; depends=[msm optimx sn survival]; }; parfossil = derive2 { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[foreach fossil]; }; - parglm = derive2 { name="parglm"; version="0.1.0"; sha256="1igj89izhn115r18gprbhr00lzyi7a7164mqs8378gh6ch5mlv5n"; depends=[Matrix Rcpp RcppArmadillo]; }; - parlitools = derive2 { name="parlitools"; version="0.2.1"; sha256="14nzcbjddwnsiwwksl7bf2qk1kzzcnjc0b47ilqiq4nc4c386im3"; depends=[dplyr hansard httr jsonlite mnis sf stringi tibble]; }; + parglm = derive2 { name="parglm"; version="0.1.1"; sha256="0l9spr0cdiamkrvf4kzf2sgimm3ksralb70960vn1jw7ggh16wfz"; depends=[Matrix Rcpp RcppArmadillo]; }; + parlitools = derive2 { name="parlitools"; version="0.3.0"; sha256="1ziid1lrm7bhnaaq6k8dy9dpqdv89mq1j8lj015c2xwwjx6v76bx"; depends=[dplyr hansard mnis readr sf snakecase stringi]; }; parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; parmsurvfit = derive2 { name="parmsurvfit"; version="0.1.0"; sha256="0d3614q76dw3f7y9p8378hdny7bz5fymma5l0zpygr1cfnacdhh6"; depends=[fitdistrplus flexsurv ggplot2]; }; parsec = derive2 { name="parsec"; version="1.2.1"; sha256="0bdhpq5xx0318yyk1c0a5bi32ylvq7wr0d7gdf0z0czl2060r0na"; depends=[igraph]; }; parsedate = derive2 { name="parsedate"; version="1.1.3"; sha256="0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"; depends=[]; }; parsemsf = derive2 { name="parsemsf"; version="0.1.1"; sha256="0ks4503k06ib5lq4ar2rg0sdni99rjcqxj76b0mclasxbi07kjsa"; depends=[DBI dbplyr dplyr lazyeval RSQLite stringr tidyr]; }; + parsetools = derive2 { name="parsetools"; version="0.1.0"; sha256="19mf92qjhqcdhmf3affwm8zk965xnay848csm9glcb2a6lh0nhqq"; depends=[]; }; parsnip = derive2 { name="parsnip"; version="0.0.1"; sha256="00ddfv5lqkk5klb7p0xxna0l02rc4ibir5z82i0b6n6n9smv8f3h"; depends=[dplyr generics globals glue magrittr purrr rlang tibble tidyr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partialAR = derive2 { name="partialAR"; version="1.0.11"; sha256="1x7vsrjn91nr4bbkzz9mp8h93j9yhwwaqw1abh5n3bsrkq3xmgqj"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; }; partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; - particles = derive2 { name="particles"; version="0.2.1"; sha256="0rhxn3c62x3xc9lcy7xbg6r7pgfylan7cz24v8i9icjhl7xfswmv"; depends=[digest dplyr igraph magrittr mgcv Rcpp rlang tidygraph]; }; + particles = derive2 { name="particles"; version="0.2.2"; sha256="0pncfpk89hsfjch8h5b86rx7hsgdyg9bsxc54f5bf0y8gh9v98qj"; depends=[digest dplyr igraph magrittr mgcv Rcpp rlang tidygraph]; }; partitionComparison = derive2 { name="partitionComparison"; version="0.2.4"; sha256="07w1r4mdi8gv5bjj8shjdjbkply85pp7x5gnwxq96f9g1p4s24pz"; depends=[lpSolve Rdpack]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; @@ -10092,7 +10126,7 @@ in with self; { partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; party = derive2 { name="party"; version="1.3-1"; sha256="13h8k2m933g9l4df1jjihn9i7ad0jrjyzga6chy0hb54xxi2asni"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; - partykit = derive2 { name="partykit"; version="1.2-2"; sha256="118zrf9015kh0gicma98ddm80qhicdlhri2h1nwz0wlng9hkyxbg"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; + partykit = derive2 { name="partykit"; version="1.2-3"; sha256="0dfs33wdzx165i36x3sy9ga5rq3plk0czkfj5an98gr8dqj9nx2n"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; passport = derive2 { name="passport"; version="0.2.0"; sha256="1jiwivrz7781zmwxmw13rxl80cr9r5pinnk5bvqz8nhfmlx0zmgd"; depends=[]; }; password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; @@ -10102,8 +10136,7 @@ in with self; { patchDVI = derive2 { name="patchDVI"; version="1.9.1616"; sha256="1akdlzw8v2p1zz09bm88d63jyxj7fv5h50p459p9ml4yc816xvji"; depends=[]; }; patchPlot = derive2 { name="patchPlot"; version="0.1.5"; sha256="1b4k0dvvj6qwyxbqb36knyrawvy5qq8hl45pz896c9rkqhlg02bx"; depends=[datautils]; }; patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; - patentsview = derive2 { name="patentsview"; version="0.2.1"; sha256="104qq6cqvfk5m2yynpg5iwlp89y5qx18m20qp343mknxjbvqpjdg"; depends=[httr jsonlite]; }; - pathClass = derive2 { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; }; + patentsview = derive2 { name="patentsview"; version="0.2.2"; sha256="003pcddz6adsh893xvlb9d72r316z14nlp3fwm1vbc50hpa24w6z"; depends=[httr jsonlite]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; }; pathfindR = derive2 { name="pathfindR"; version="1.3.0"; sha256="1pljw5pz6g1jpk92smbmzwgwx7p3jvjyvr7fciajay39gfvj7fd5"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 igraph knitr org_Hs_eg_db pathview rmarkdown]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; @@ -10117,7 +10150,7 @@ in with self; { pavo = derive2 { name="pavo"; version="2.0.0"; sha256="1mcrx26lbhldmf1wlkpbpa4ld85wjbvr2kjidzb1hb78lqbv05ad"; depends=[geometry imager mapproj pbmcapply plot3D rcdd sp]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; pawls = derive2 { name="pawls"; version="1.0.0"; sha256="01sf1cmd216ca5iwmw4hfnxi9lvh16r441cfcaa3n77zhq0i4w7n"; depends=[]; }; - pbapply = derive2 { name="pbapply"; version="1.3-4"; sha256="0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"; depends=[]; }; + pbapply = derive2 { name="pbapply"; version="1.4-0"; sha256="0bn7a9ni36xy5acnrl9ky3gd1k8jr5kxgazzh3pzd1q6bri1nx7k"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbdBASE = derive2 { name="pbdBASE"; version="0.5-0"; sha256="11jlfr0pswldd5h06swfrc8bm785dv09iqgg3kfnc53yvrs0d7qv"; depends=[pbdMPI pbdSLAP]; }; pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-1"; sha256="0vr3dvvhr8j6xvdf308nn37y0lkl2ysm93yf0h7rclvqvsk1pf66"; depends=[pbdBASE pbdDMAT pbdMPI]; }; @@ -10131,11 +10164,12 @@ in with self; { pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; pbkrtest = derive2 { name="pbkrtest"; version="0.4-7"; sha256="1si3bhi59xc51a0pgjjglccq3h4aljyhw2k1b8574s145fnh7fsw"; depends=[lme4 MASS Matrix]; }; pbm = derive2 { name="pbm"; version="1.1.0"; sha256="054navz4fmn25nq3lsfnsnm35shj9wq4qz69d4ajw0q09gnb1cy8"; depends=[]; }; - pbmcapply = derive2 { name="pbmcapply"; version="1.3.0"; sha256="1vah4gcayl0ggzfz17b588s4f5fwxb8wrcq07y267kc6prmq1z35"; depends=[future]; }; + pbmcapply = derive2 { name="pbmcapply"; version="1.3.1"; sha256="00ampsksphhi0l8mxyksadvvzjdpg42gmgq74bizka1hscvp0g3m"; depends=[future]; }; pbo = derive2 { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pbv = derive2 { name="pbv"; version="0.2-16"; sha256="1jr0xvk56d7qqpj7azw64lidwc3604iw87k7cccswv4yvbihvzzk"; depends=[Rcpp RcppArmadillo]; }; pcIRT = derive2 { name="pcIRT"; version="0.2.3"; sha256="1gr4rij7anvfzbs4pvzhvfl0msbm83qs5n588l4jbraxqynvmkaw"; depends=[combinat Rcpp]; }; + pcLasso = derive2 { name="pcLasso"; version="1.1"; sha256="1wdwin6xszysydspxjb8b6r3y416ri3zndh0s142b2487lhmqkb6"; depends=[svd]; }; pca3d = derive2 { name="pca3d"; version="0.10"; sha256="1bpm4sbj7h2fd0h5ybjhq8g61l8v2fbc92yiiascdgfili85zsf3"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; pcaL1 = derive2 { name="pcaL1"; version="1.5.2"; sha256="1f7481wn2c935llb9visfdlv958ixxqybp5r2dy7nm18jacf2a0l"; depends=[]; }; @@ -10148,9 +10182,8 @@ in with self; { pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; - pcgen = derive2 { name="pcgen"; version="0.1.0.0"; sha256="151dhk1wnc5byrbvx2322bwy047ing3a9zw1q977w347r90h7arr"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; }; pch = derive2 { name="pch"; version="1.3"; sha256="13pfrvp539fz4hxp08yil93caw3cjdna7xnky5fqd0lhc84fwq76"; depends=[survival]; }; - pcmabc = derive2 { name="pcmabc"; version="1.0"; sha256="02qh8718786abw8pcxc6ry0a447vqd8rviaka79g5cbi51klgp28"; depends=[ape distory geiger mvSLOUCH phangorn TreeSim treespace yuima]; }; + pcmabc = derive2 { name="pcmabc"; version="1.0.2"; sha256="189i38r6ylpbxk66mjvdqrp0iawdb346g7g3gzzi0w2z21kzj619"; depends=[ape distory geiger mvSLOUCH phangorn TreeSim treespace yuima]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.6"; sha256="0rpd1bgg932xhj03fnskhbg7ni9nfd8qrvxvix8qmbgw8bwdsbgd"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; pcr = derive2 { name="pcr"; version="1.1.2"; sha256="0sms024irkhqyb001lcicrm3dwnnyr2kw9kx10q3v9j6p7rxzhz2"; depends=[devtools dplyr ggplot2 magrittr purrr readr tidyr]; }; @@ -10163,9 +10196,9 @@ in with self; { pder = derive2 { name="pder"; version="1.0-0"; sha256="097klk334bjhlss8x73f27l7jcp7d7vh10jr5sazm5kcvi95619i"; depends=[]; }; pdfCluster = derive2 { name="pdfCluster"; version="1.0-3"; sha256="13m7b2wivvf58vyqbysj4r04w0nj2b5x0xnaxip712a6c66x1h7l"; depends=[geometry]; }; pdfetch = derive2 { name="pdfetch"; version="0.2.3"; sha256="1fcjhq79dcbnghmkfpy1h29gcywr1hq91xij5f21wgp4xx465sha"; depends=[curl httr jsonlite lubridate readr reshape2 XML xml2 xts zoo]; }; - pdfsearch = derive2 { name="pdfsearch"; version="0.2.3"; sha256="1x6ymj6fk7bf2jx1lqryyzksg049ijdvb9syz244y43i7632ls59"; depends=[pdftools tibble tokenizers]; }; + pdfsearch = derive2 { name="pdfsearch"; version="0.3.0"; sha256="0mk1s8b7cdz025xn9kg5xnw388sndhjm80ckf71daxviknrzcscf"; depends=[pdftools stringi tibble tokenizers]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="2.0"; sha256="18hav7ia8fbh41s7cpapgx9macl5739k2vyfiwp9w7ay8fdp7saq"; depends=[Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="2.1"; sha256="0w6flmg8xblpj407calzc7i5bq3bhw0fdvf1s9ahky1pgyn2p2av"; depends=[Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; pdp = derive2 { name="pdp"; version="0.7.0"; sha256="0wcszaq4c14f9a2r1gd32mzhs035jlg2w8mkfklzigcj7fv9xmi8"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; }; @@ -10194,9 +10227,9 @@ in with self; { penaltyLearning = derive2 { name="penaltyLearning"; version="2018.09.04"; sha256="07ddsq6bwbz0c9pixlw8gj1km6zqhqsqn1a19pgmjrr5mq1iix9p"; depends=[data_table geometry ggplot2]; }; pencopula = derive2 { name="pencopula"; version="0.3.5.1"; sha256="1ivnqfq70gvnzc19brkvdlq0ks5dd954dj46j3pqpg6crvdrzh9r"; depends=[fda lattice latticeExtra quadprog]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; - pense = derive2 { name="pense"; version="1.2.0"; sha256="0wilfjhkj5hrgm7mak1hvlk07wrr3f774w26vyvbwlm8xsxxsbzz"; depends=[Matrix Rcpp RcppArmadillo robustbase]; }; + pense = derive2 { name="pense"; version="1.2.1"; sha256="1hgc20rabc26hzsgga05ys56kksf9gxqgl0zjv5v1arcfln97k4d"; depends=[Matrix Rcpp RcppArmadillo robustbase]; }; pensim = derive2 { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgnx0pq3c802n9k8irngmh8iy4w3wbhrq"; depends=[MASS penalized]; }; - peperr = derive2 { name="peperr"; version="1.1-7"; sha256="01a6sxcmb8v2iz2xdwhdnr92k3w2vn3hr0hg9b6mkpzjf4n45q3k"; depends=[snowfall survival]; }; + peperr = derive2 { name="peperr"; version="1.1-7.1"; sha256="12k9crhsv3p4zrcbyr85cfwp68z3r1w2kb62g7jb7h311c7zykjx"; depends=[snowfall survival]; }; peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; }; pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; }; @@ -10210,7 +10243,7 @@ in with self; { permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.1"; sha256="06h1lqpmkg4ajjh4r837qp094h105n4mpvafnp2nsbv9yyayd4h8"; depends=[R2HTML xtable]; }; permubiome = derive2 { name="permubiome"; version="1.2"; sha256="0np10qhj5rl2gjmq5sfnpaqymmr0wag2b8fwyzndjflvypfmcsyp"; depends=[ggplot2]; }; - permuco = derive2 { name="permuco"; version="1.0.1"; sha256="19spn5ra41v7s4ixdg5pbksfi8linhvhvfmllz72iw6wbzsw8m0m"; depends=[MASS Matrix permute]; }; + permuco = derive2 { name="permuco"; version="1.0.2"; sha256="0mms11j2x3rw7c9pq2pb2wvcvx0a14p20clysa2b081xgmzx3971"; depends=[Matrix permute]; }; permutations = derive2 { name="permutations"; version="1.0-2"; sha256="04lak21x0z1cskgm5w4xdyq59kmyrz64bwfpf332vfka54aiv8lk"; depends=[magic numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-4"; sha256="1w8wzk1fg9q7wvisnfp2js70dg0m9wi12gkdhpyngpbdcgssahd5"; depends=[]; }; permutes = derive2 { name="permutes"; version="0.1"; sha256="1m5596l80nyyzassiwb6zd2fnp2jglj5vkp9xsbp28swd0q2wd90"; depends=[ggplot2 lmPerm plyr viridis]; }; @@ -10219,16 +10252,16 @@ in with self; { personalized = derive2 { name="personalized"; version="0.2.2"; sha256="094shd28947kfl8p2ckbqn4x4f72b8ni83zjgqk29xrr3rmj5jm6"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; }; perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; - perturb = derive2 { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; }; + perturb = derive2 { name="perturb"; version="2.10"; sha256="07c84x67hzyr70zkmd00f4gxqzcrpizc7w7h2hs22xy6p719a5i2"; depends=[gdata]; }; perturbR = derive2 { name="perturbR"; version="0.1.2"; sha256="0hb4bbcij5x9nbvmwr0j59x1hsnf9ddyhkixnbwvmbsha0nkcbww"; depends=[ggplot2 igraph]; }; petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; }; petrinetR = derive2 { name="petrinetR"; version="0.2.0"; sha256="04alyjjnwgkbd4qigxki57v3hqa02vr1d5g7slp5njds1vk928ci"; depends=[DiagrammeR dplyr purrr visNetwork xml2]; }; + petro_One = derive2 { name="petro.One"; version="0.2.3"; sha256="1xky85vfk2mpj8xxdqggismzirm3rx2wr51g12zr80i1dx5wak4i"; depends=[cluster data_table dplyr ggplot2 graph magrittr RColorBrewer Rgraphviz rvest RWeka SnowballC tibble tm urltools wordcloud xml2]; }; pewdata = derive2 { name="pewdata"; version="0.2.0"; sha256="17j8fdn9x6hannr91zyccya523z3zm03gr517xfcyrd0m486xnqb"; depends=[httr magrittr purrr rvest]; }; pez = derive2 { name="pez"; version="1.1-1"; sha256="14n9s604wwh07kjir5kw6sra6bbmnpg00h3zvli3zqd8lx892hm8"; depends=[ade4 ape apTreeshape caper FD Matrix mvtnorm picante quantreg vegan]; }; pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pgam = derive2 { name="pgam"; version="0.4.15"; sha256="12llflsb32dfvxl3nbyb9bsl9bmd35g5g163hd3axzmg1bgi21ls"; depends=[]; }; pgbart = derive2 { name="pgbart"; version="0.6.15"; sha256="0nvj541kyj2qdaxjim47ic1bj1xk056cg68bjf3q74qlwvj78rqx"; depends=[BayesTree]; }; - pgdraw = derive2 { name="pgdraw"; version="1.0"; sha256="1ips7wxksk69rgirgmd7aqqdf34qis6692wvn7npyzq9y24gwkmb"; depends=[Rcpp]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; pgirmess = derive2 { name="pgirmess"; version="1.6.9"; sha256="1i1qn68isaz2lbpqyydjgj9kri09aknza5qjn6m1wa1alyl7f611"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive2 { name="pglm"; version="0.2-1"; sha256="14hnlidf62kzcf83jc7k17n4hjjaj82scdwh8a7qxd056vygkqx2"; depends=[maxLik plm statmod]; }; @@ -10242,20 +10275,20 @@ in with self; { ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; phangorn = derive2 { name="phangorn"; version="2.4.0"; sha256="0xc8k552nxczy19jr0xjjagrzc8x6lafasgk2c099ls8bc1yml1i"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; phantom = derive2 { name="phantom"; version="0.1.3"; sha256="0kgw65jziw5s03isq5ywmqijhkbik5i84k30hx5gbi0zzgj8y0h1"; depends=[gplots MASS NMF qusage RColorBrewer Rcpp RcppArmadillo]; }; + phase1PRMD = derive2 { name="phase1PRMD"; version="1.0.1"; sha256="1gg11rvs5zqza66f7r7sw7g3w8nzi3il1883wpwzqhp58hsphjdw"; depends=[arrayhelpers coda dplyr ggplot2 gridExtra kableExtra knitr MASS phase1RMD plyr RColorBrewer reshape2 rjags]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.8"; sha256="1wvlajsqb8y8f30asq1lyk87kmakh2risnky98g5gday765y90qa"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; phaseR = derive2 { name="phaseR"; version="2.0"; sha256="14shpsyrcz1j0bl60vh37cpcvmry48s76xlf4f9lmq4l5vynhrcn"; depends=[deSolve]; }; phateR = derive2 { name="phateR"; version="0.2.9"; sha256="0zsi047rm0vi5ap4aaiab0ll19xarbg31k4q3fs3dcmsnqg1nrj1"; depends=[ggplot2 Matrix reticulate]; }; - phcfM = derive2 { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; }; - pheatmap = derive2 { name="pheatmap"; version="1.0.10"; sha256="1jzxs5hwbz3r0z2pp09i7fd14sndxnrbm3zibaac3kny4nzydzf7"; depends=[gtable RColorBrewer scales]; }; + pheatmap = derive2 { name="pheatmap"; version="1.0.12"; sha256="1hdh74az3vyzz6dqa311rhxdm74n46lyr03p862kn80p0kp9d7ap"; depends=[gtable RColorBrewer scales]; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; }; phenex = derive2 { name="phenex"; version="1.4-5"; sha256="00lsymflbmlxzxz8rxcpc94pc9zmhybial9f2xkz98h6h45zgrjl"; depends=[DEoptim foreach]; }; phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; pheno2geno = derive2 { name="pheno2geno"; version="1.4.0"; sha256="0fy8z6x1y0sakp07jb6zs0w0f86pbbllicj4qylxzfd5rpn1rqr0"; depends=[mixtools qtl VGAM]; }; phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; }; - phenocamapi = derive2 { name="phenocamapi"; version="0.1.2"; sha256="1244dm8vm291mbx9di32nivmflr97dym9f4wh0ar4ps8g639j6bn"; depends=[data_table RCurl rjson]; }; + phenocamapi = derive2 { name="phenocamapi"; version="0.1.3"; sha256="1ps0v3jcyzm91c0850gs3df7xdds0cjqs62gsr0nsknw5f7kq30b"; depends=[data_table RCurl rjson]; }; phenocamr = derive2 { name="phenocamr"; version="1.1.1"; sha256="1ic0w9rfh0s50b9kzwmcqam51vibq9ji19vkcscz10grdbwjc502"; depends=[changepoint daymetr httr jsonlite shiny zoo]; }; - phenology = derive2 { name="phenology"; version="7.2"; sha256="0p39xihqlcapgsb6j90g9hal1jjrd9fra639hxc5gw4kl8nhlndq"; depends=[HelpersMG lmf numDeriv optimx]; }; + phenology = derive2 { name="phenology"; version="7.3"; sha256="0hklk5k0i6vv733dm3npphg0zrhlb14ps6j6wwvsx50sqr3xl9jg"; depends=[HelpersMG lmf numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; phenopix = derive2 { name="phenopix"; version="2.3.1"; sha256="1yy163nh2b74m0v7f2gkgxaplvw4whs2h30bkw4chl0zyrcrci86"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster SDMTools sp stringr strucchange zoo]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; @@ -10264,7 +10297,7 @@ in with self; { phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; - phonics = derive2 { name="phonics"; version="1.1.0"; sha256="02h26dlhw0hisr2ifa1rkrzw0350pk32mrba7h1rwsh41vxv9sji"; depends=[BH Rcpp]; }; + phonics = derive2 { name="phonics"; version="1.2.3"; sha256="1v0x0rz7lm61r8lgzwm3jjbz2jv81d21fbsyq0srp1fw1gkq7gln"; depends=[BH Rcpp]; }; photobiology = derive2 { name="photobiology"; version="0.9.25"; sha256="15jqva860bg7s12v142l2m06l1fymc0lpd2viqyifm818kjis8r5"; depends=[dplyr lubridate plyr polynom rlang splus2R tibble zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.4.4"; sha256="14aiw5jxd6wnngy1rbbm85l0yx64nxrancal017wvr5n867c32d6"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.19"; sha256="0qdd3s33hbschjwjj69j4ya0sjf4myibk8s0rjh7n48vyrxg50zf"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate photobiology readr readxl stringr tibble tidyr]; }; @@ -10275,7 +10308,7 @@ in with self; { photobiologySun = derive2 { name="photobiologySun"; version="0.4.0"; sha256="0aczf1ki623pflsnn08z0nrsx7wwn67b8ql08ar08rpk1bj93nfy"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.2"; sha256="0l1784xi9hzsxmiqipv0zkb4lq1xd9f890rzsgsjb0km6js5x3q7"; depends=[photobiology]; }; phrasemachine = derive2 { name="phrasemachine"; version="1.1.2"; sha256="1145c8ymarhbza8253rw4ybnq0k5pcckqxpdcr8s2y23pj182r1p"; depends=[NLP openNLP stringr]; }; - phreeqc = derive2 { name="phreeqc"; version="3.4.9"; sha256="0g3xlpwzb6vxz129kh7krf2lbhx6bgwmyjxk09mrzxzh3r5lqd9y"; depends=[]; }; + phreeqc = derive2 { name="phreeqc"; version="3.4.10"; sha256="1gmi81dical39ph1yf7n0pkhgbaf7p5xhv2cg3n15j1vpr8gwikl"; depends=[]; }; phtt = derive2 { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phuse = derive2 { name="phuse"; version="0.1.7"; sha256="1khrz6jag3d0himbqxylxpx7iyx8nbk3r23q6257a4fy55wakavd"; depends=[git2r httr RCurl rlist shiny stringr yaml]; }; @@ -10284,7 +10317,7 @@ in with self; { phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; phylin = derive2 { name="phylin"; version="1.1.1"; sha256="1hxmh5jgcz41bhmi8kvimw0b6m4p3yq85bh79hl7xbx2kshxmvzq"; depends=[]; }; phyloTop = derive2 { name="phyloTop"; version="2.1.1"; sha256="1n44kr3a9yg8yvy3m493zi04x6aiqm424fp2ls9yzyx1cga2h9nk"; depends=[ape igraph NHPoisson phylobase]; }; - phylobase = derive2 { name="phylobase"; version="0.8.4"; sha256="00hh53ibr7ddck4rl1rz9bpjsvjym040c5f78l1yizv6q9rakhfp"; depends=[ade4 ape Rcpp rncl RNeXML]; }; + phylobase = derive2 { name="phylobase"; version="0.8.6"; sha256="1n9g69llrh8xfmrnxh78rr09cxy5qbc99dr3amg121pl1qhpn4g7"; depends=[ade4 ape Rcpp rncl RNeXML]; }; phylocanvas = derive2 { name="phylocanvas"; version="0.1.3"; sha256="1l5br500lwwf7vp8wph5ykpkpqd15lypvhzy0c1cc8g8c6f7pckn"; depends=[ape htmlwidgets phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; phylocomr = derive2 { name="phylocomr"; version="0.1.2"; sha256="1x5ygzd4rkgxk0pczpjp2g7n98jl48rx560jqyjv0bdvlafy3l83"; depends=[sys tibble]; }; @@ -10295,7 +10328,7 @@ in with self; { phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.0.2"; sha256="0ngfqi3fx646r5szbzbsh5g7zkrs29swpx7csr3nwzj8n12bqbfp"; depends=[ape dplyr ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble tidyr]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.0.2"; sha256="1xgv2kf7j3ia5vk10r7w9588rfv7asdaf8f3yxwp5q7aqn3krm6q"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; - phylosignal = derive2 { name="phylosignal"; version="1.2"; sha256="0apsg4v1n58wn8y8wnl6x1ahl903i29hh8bs2dw6ky2jafkjj4jb"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; + phylosignal = derive2 { name="phylosignal"; version="1.2.1"; sha256="10ds4vn5rw3nrgvsg2n0b53bivy54p5j7fmnqn81alzz9irgrkcs"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylosim = derive2 { name="phylosim"; version="3.0.2"; sha256="148zm43cgdhr264ffcabjx4abykks07jix6lypqysqy25fbmdngk"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; }; phylotaR = derive2 { name="phylotaR"; version="1.0.0"; sha256="0plxc3l9fxxj9mfnhnpp5wrxyvxm292fxrwx2g8xysasmjb301v9"; depends=[ggplot2 igraph R_utils rentrez sys treeman treemapify XML]; }; phylotate = derive2 { name="phylotate"; version="1.2"; sha256="19nssrdax5w5a50159j39jgs7305s48k3h56ivyzs5di6l7x1yxj"; depends=[]; }; @@ -10309,7 +10342,7 @@ in with self; { pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.0.2"; sha256="07vz90cghkbmcar9ps94wydvg4r7mj32pa7vjdmgm5j8dhxq8max"; depends=[car lme4 MASS nlme pbkrtest]; }; pifpaf = derive2 { name="pifpaf"; version="1.0.1"; sha256="0wj1fbhd871fnw7fjlbh0gdjz848mbwl1bzjp3cgmh9s7jnd2kci"; depends=[ggplot2 gridExtra MASS matrixcalc numDeriv sfsmisc]; }; - piggyback = derive2 { name="piggyback"; version="0.0.8"; sha256="1c17yjqpaj6r6spbhm901dilqpsa2s9jc029vdfmrxdk18fzaf1f"; depends=[clisymbols crayon fs gh git2r httr jsonlite lubridate magrittr memoise usethis]; }; + piggyback = derive2 { name="piggyback"; version="0.0.9"; sha256="1gsnj6yazczjhz1g8xfnaqanf43x91ja60m829ar9mapsi08arh5"; depends=[clisymbols crayon fs gh git2r httr jsonlite lubridate magrittr memoise usethis]; }; pillar = derive2 { name="pillar"; version="1.3.1"; sha256="1xnbb9sr5wn9dmp6m7cr4z7i6pmjvyabnfcx6x7i7mvdjmgvaf5k"; depends=[cli crayon fansi rlang utf8]; }; pim = derive2 { name="pim"; version="2.0.1"; sha256="1m804clxc8m4nyzi4hhfy118527lgf2sb7589qd61fb83yh6hi8p"; depends=[BB nleqslv]; }; pimeta = derive2 { name="pimeta"; version="1.1.1"; sha256="0ylna31x8491q6hppz827ngri0did0bfwy3nlifpagccb2m4psi3"; depends=[Rcpp RcppEigen]; }; @@ -10319,7 +10352,7 @@ in with self; { pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; - pinp = derive2 { name="pinp"; version="0.0.6"; sha256="1424syaxq8p0ldqa0ybn0qyizs4r00xgkf6h5p7frhavy4rf8f2v"; depends=[knitr rmarkdown]; }; + pinp = derive2 { name="pinp"; version="0.0.7"; sha256="0m7k8z6gnkqwxf5iggdxgi4i1g0xnw2s3w94srz2mmwmyqa4zfpi"; depends=[knitr rmarkdown]; }; pinyin = derive2 { name="pinyin"; version="1.1.5"; sha256="16y5imwkjq44qyk59ygqilsf6j8sviwj7i9mmwl5f6lxd10p9nyg"; depends=[data_table splitstackshape]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; }; @@ -10329,16 +10362,15 @@ in with self; { pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="0.1.1"; sha256="1265y4lv2m5nwrh25sahjkxwmivpxgh9shrdidlmaman7zs6cclr"; depends=[Rcpp]; }; - pivmet = derive2 { name="pivmet"; version="0.1.0"; sha256="1911ds6mfw3lp4921g9i6kk27nvj07h770xazr7f40jcmmg6lz69"; depends=[bayesmix cluster MASS mclust mvtnorm RcmdrMisc rjags runjags]; }; pivot = derive2 { name="pivot"; version="18.4.17"; sha256="0nhf76f2g35cx5f1m00wsy29n6xm2x5wajs5myaasks7hbkk0w3y"; depends=[assertthat colorspace DBI dbplyr dplyr lubridate magrittr purrr rlang tidyr tidyselect]; }; pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.1.0"; sha256="024srncm288mn3bz6hv7ljzkchmnljk4yc2d4z7i05vsn7dzd2c6"; depends=[curl httr]; }; pivottabler = derive2 { name="pivottabler"; version="1.0.0"; sha256="106q62bfnkmh328kdzshwz8v01pz2qiyxcgmfbn3rc0cd9ml6wyj"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; }; pixels = derive2 { name="pixels"; version="0.1.0"; sha256="0lna0z2shs49kh48ipjnyigaa22wb9gm4mq970ldhh9msb7wcv55"; depends=[htmlwidgets miniUI shiny]; }; - pixiedust = derive2 { name="pixiedust"; version="0.8.5"; sha256="1b3i2l6vzqbpycp9fw439k4jzdy19kvsjj4j6klfvdbkqf911hfw"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; + pixiedust = derive2 { name="pixiedust"; version="0.8.6"; sha256="1dajiblpm51szndz026lmwh6swx8f9f03s6md26d84awcx0q1dpc"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; }; pkgbuild = derive2 { name="pkgbuild"; version="1.0.2"; sha256="1i1rrax7x7r2bplig5cfc50lx85jc4n9a3qmvbdviaj22wr2lghs"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; - pkgcache = derive2 { name="pkgcache"; version="1.0.2"; sha256="142r63gbx1rpbqxxwamcyvyq6x68i7w7sdsnfw8k8dw4bqzvv2mg"; depends=[assertthat cli cliapp crayon curl digest filelock glue prettyunits R6 rappdirs rematch2 rlang tibble uuid withr]; }; + pkgcache = derive2 { name="pkgcache"; version="1.0.3"; sha256="0f1025d9mz6nza0537d274k2vg8jmd2nqdbs18vdr6dypq5sy50y"; depends=[assertthat cli cliapp crayon curl digest filelock glue prettyunits R6 rappdirs rematch2 rlang tibble uuid withr]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.0"; sha256="0pxj798042g23cf19r67nbgdyhpd868n2pkqjvjgrgr8ivwnkf1h"; depends=[]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.2"; sha256="1jk9ip549xphb3anfixqv1yx5kidnndqgy9v3qjpmgmds5a7g695"; depends=[]; }; pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; }; @@ -10346,17 +10378,16 @@ in with self; { pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkgload = derive2 { name="pkgload"; version="1.0.2"; sha256="0z7jvharafahi2gv5547mk1n499isjzw06kfwymmxc0gd575d1ii"; depends=[desc pkgbuild rlang rprojroot rstudioapi withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.27"; sha256="0spcamjncj78kzjps2rw4v1a4494yazv6xvhn0vmdflnypc8k8hp"; depends=[bibtex codetools digest magrittr registry stringi stringr withr xtable]; }; - pkgnet = derive2 { name="pkgnet"; version="0.2.1"; sha256="06a2nyl4cy02k1jnlprxsrkv29ivlnwwswkb2nigrsd5m72isrwf"; depends=[assertthat covr data_table DT futile_logger igraph knitr magrittr mvbutils R6 rmarkdown visNetwork]; }; + pkgnet = derive2 { name="pkgnet"; version="0.3.2"; sha256="1l118jkncg5s1zvb6bp6kd5rbjfqpyfhr1d12qwx5p71q47vrr21"; depends=[assertthat covr data_table DT futile_logger igraph knitr magrittr R6 rmarkdown visNetwork]; }; pkgsearch = derive2 { name="pkgsearch"; version="2.0.1"; sha256="00wi4lym0zjb29qdalgwlbcdxi4k39pxxm6a2qhllfcbgc099mlb"; depends=[httr jsonlite magrittr parsedate prettyunits]; }; pkgverse = derive2 { name="pkgverse"; version="0.0.1"; sha256="0lsv7s9vsjvfpy19nxbdlbm363j01wwqqnrp0nlrik590hfq4w83"; depends=[devtools usethis]; }; pkmon = derive2 { name="pkmon"; version="1.0"; sha256="0j2v4zlf7vgy5gld29xiii15m9i85cpiwc25rmzjm02cz2p32c72"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; }; pks = derive2 { name="pks"; version="0.4-0"; sha256="0fx7p2d83x0ip65aqp9dga59d9cggam8k79mi0drk5birzchqbcr"; depends=[sets]; }; - pksensi = derive2 { name="pksensi"; version="1.0.0"; sha256="1jysfdd50d1sgnhn31mrcpr5brx0qb97cb6c3kls3jca66i4a6l0"; depends=[data_table deSolve dplyr getPass ggplot2 magrittr reshape]; }; + pksensi = derive2 { name="pksensi"; version="1.0.1"; sha256="15dmpakagwv6262f5gvf1mzg4zb99xh1cz9fw6bmzjsixb00rw99"; depends=[data_table deSolve dplyr getPass ggplot2 magrittr reshape]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; pla = derive2 { name="pla"; version="0.2"; sha256="1qb71zjcxvs3zbfy0sryyxizwix0nw530zsfw661a8vm8sk054kw"; depends=[]; }; plac = derive2 { name="plac"; version="0.1.1"; sha256="08kqnjzbfygnbqvqg5wyw148kfhjqxy46y4vaiq9zzwzj58w8vzn"; depends=[Rcpp RcppEigen survival]; }; - placement = derive2 { name="placement"; version="0.1.1"; sha256="1narjb90sb5prvzfv2x30bz8y9aq8hqggza91ghwi47m99vm1dg6"; depends=[base64enc digest jsonlite RCurl stringi urltools]; }; plan = derive2 { name="plan"; version="0.4-3"; sha256="0j3mvcy97r7adcs7q6z0w9ng74jcfwii1xp8kcl2cwbzs2fd425r"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; planor = derive2 { name="planor"; version="1.4-1"; sha256="1ci4wp18jjc8pjdn89vsz0nfdjif7fz6l5f6x6blqh9cz4hkkrlf"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; @@ -10364,7 +10395,6 @@ in with self; { plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; plater = derive2 { name="plater"; version="1.0.1"; sha256="0v5b9r6iha18qvrjpbr1p8fy06nf31x63ch5cnb4axyqa0x5skpp"; depends=[dplyr]; }; platetools = derive2 { name="platetools"; version="0.1.1"; sha256="0k2b13izcpr638hkfar2b09r49gyll71dmbvl1sffqw80pnz2wx0"; depends=[dplyr ggplot2 plyr RColorBrewer]; }; - playwith = derive2 { name="playwith"; version="0.9-54"; sha256="1zmm8sskchim3ba3l0zqfvxnrqfmiv94a8l6slcf3if3cf9kkzal"; depends=[cairoDevice gridBase gWidgets gWidgetsRGtk2 lattice RGtk2]; }; plde = derive2 { name="plde"; version="0.1.2"; sha256="1g1b1sgyfxgfkjcr3sdkan8jd6r7yyi0izc83vyj11bdk08jx22h"; depends=[]; }; pleiades = derive2 { name="pleiades"; version="0.2.0"; sha256="1h3q4yf0w0al7n8l7ca4vgx2bhrrz8clli15svlds7n402s8rzp5"; depends=[crul DBI dbplyr dplyr gistr jsonlite rappdirs RSQLite]; }; pleio = derive2 { name="pleio"; version="1.6"; sha256="0av1sl0fdn2ia7ddalbvidhcnsvs36iq618s1bknjw29y5yyq020"; depends=[Matrix rms]; }; @@ -10374,16 +10404,17 @@ in with self; { plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkQC = derive2 { name="plinkQC"; version="0.2.0"; sha256="1ydrd6m25rmaii7n1d1p052kmiy3kf7871q838mzb425kxyyyfxv"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel optparse R_utils sys UpSetR]; }; - plm = derive2 { name="plm"; version="1.6-6"; sha256="1a14a8zbqzm2a6z44haa0c23ax9j1jk72dhrkca8q0abbd5lkx85"; depends=[bdsmatrix Formula lattice lmtest MASS maxLik nlme sandwich zoo]; }; + plm = derive2 { name="plm"; version="1.7-0"; sha256="1r6bgx8x408wm24q11m5pxf7w22yx96f7rlj5kpfggybl2mjqla3"; depends=[bdsmatrix Formula lattice lmtest MASS maxLik nlme sandwich zoo]; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive2 { name="pln"; version="0.2-1"; sha256="09zg7zwmmqpjr1j59lqsjf4blrkya9wfwddgzfm9rr5jxrzvqcv8"; depends=[]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; plot_matrix = derive2 { name="plot.matrix"; version="1.0"; sha256="1p2xrmwghrl9lirnch5fqlrwiipga96ppbih0sg8939g4szxnbji"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.1.1"; sha256="0chn70fqwyca8lbnjnpbcj08ni0dfbax2gjmzhk2c4w72c04mzpn"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.1"; sha256="12p4qc9vmhr86ssx6xnz3cmx84q5jgd28bw9dp4wjrn04n6l4va6"; depends=[plot3D rgl]; }; + plot3logit = derive2 { name="plot3logit"; version="1.0.0"; sha256="0mgyk1xfa2jyydsgdxyavx4qr1nbvpabrmyri442gxzwn1j153la"; depends=[ggplot2 ggtern magrittr reshape2 Ternary]; }; plotGMM = derive2 { name="plotGMM"; version="0.1.0"; sha256="0zrqpg7jpnk5p73jvnvfzrxgz6p5q14vafr6wb15zl34vc3826v5"; depends=[ggplot2 mixtools]; }; plotGoogleMaps = derive2 { name="plotGoogleMaps"; version="2.2"; sha256="0qv57k46ncg0wrgma0sbr3xf0j9j8cii3ppk3gs65ardghs3bf6b"; depends=[lattice maptools raster rgdal sp spacetime]; }; - plotKML = derive2 { name="plotKML"; version="0.5-8"; sha256="0rd9242li967w253xhfywg72d3v1n5dybjxldkjgdix17gddwn5k"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; + plotKML = derive2 { name="plotKML"; version="0.5-9"; sha256="08pbpa3j4m4vngl902z7hr1p7yjimhxmajx7lw45p226x654x6xr"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; plotROC = derive2 { name="plotROC"; version="2.2.1"; sha256="0bk8j2lp80zcz4kkig1y5a1ig8vbjh7b4inzc46bn07ns1rdjgzg"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; @@ -10391,7 +10422,7 @@ in with self; { plotfunctions = derive2 { name="plotfunctions"; version="1.3"; sha256="0cnmwkfjg45187j490sf01gxijhajrpi6j13hfckli2ysn6xrgz3"; depends=[]; }; plotluck = derive2 { name="plotluck"; version="1.1.0"; sha256="0arbvldg50lyn98vkrys1yjkkraz8jracwal4r2mlw991pnaikpp"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; plotly = derive2 { name="plotly"; version="4.8.0"; sha256="19p8pa03q9mw5vaan7r56xgd13d90ssiz0flbrkvpfrir2105ybq"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr viridisLite]; }; - plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.1"; sha256="0if4cahihxm0b2k3r0w6qj91mwwsjy5zm289zk6myg65i7ijqly4"; depends=[]; }; + plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.2"; sha256="1c6i4dz5qmym1pcddgffcqgb76jz84252xldprg2caylrqvzv6b7"; depends=[]; }; plotmo = derive2 { name="plotmo"; version="3.5.2"; sha256="1ihyn94mp61pbv9ncl2h5ihkq1fb6vhhcmjdzsncb9lz7hi1b7a6"; depends=[plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; @@ -10400,16 +10431,15 @@ in with self; { plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; }; plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; }; pls = derive2 { name="pls"; version="2.7-0"; sha256="0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x"; depends=[]; }; - plsRbeta = derive2 { name="plsRbeta"; version="0.2.3"; sha256="0yk2pirgszpdf33zk9ijh776aw4f238sjmga3w06xbvwf8q2vw8j"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; }; - plsRcox = derive2 { name="plsRcox"; version="1.7.3.1"; sha256="1ni1hx54qxk48nnypqd9j189vi4vph3lqg06r39mv7xa4ap8ypmv"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; - plsRglm = derive2 { name="plsRglm"; version="1.2.3"; sha256="0qf3nh3nw6psqr12zw9r5vagrlpwav3xiv3rh7xra13zx821kr4g"; depends=[bipartite boot car mvtnorm]; }; + plsRbeta = derive2 { name="plsRbeta"; version="0.2.5"; sha256="1p6vj9sw3hm6nax3vahmr6z58bgc8wl787949dszckn03pxhgvpb"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; + plsRcox = derive2 { name="plsRcox"; version="1.7.4"; sha256="1cpbhz85c8zpxcwi7ads981dynf83r5ka2zqy6i2swbi83jb5p4x"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; + plsRglm = derive2 { name="plsRglm"; version="1.2.5"; sha256="004x934c34rgggwb25pcfm3vlj6gc1nfnigjxnxycxjqlx8g567b"; depends=[bipartite boot car MASS mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.4"; sha256="19xz7ds4jx5ql999mwn9zs983rlshf14y4nlah8cfy9gpi0vl1g1"; depends=[bdsmatrix genalg MASS mvtnorm pls progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; - plsdof = derive2 { name="plsdof"; version="0.2-8"; sha256="00phvvb17s0y2f0xqwak7lp7bdx9lws3m5n5mbd9l8514pfdxcxc"; depends=[MASS]; }; + plsdof = derive2 { name="plsdof"; version="0.2-9"; sha256="1g41nbycgzjwrackbdf08q1phqpyy6zihm5ak2728683vd88fxzv"; depends=[MASS]; }; plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plspm = derive2 { name="plspm"; version="0.4.9"; sha256="03aj1ffq11hh931dbkxy9ba74xyvzmr1ylrj4fw1rbryrwqg89v6"; depends=[amap diagram shape tester turner]; }; plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; - plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; plumber = derive2 { name="plumber"; version="0.4.6"; sha256="1c5pryslly2ibbfc65qlavbnnaksp3p18xr1cghwbw00kz4ig147"; depends=[crayon httpuv jsonlite R6 stringi]; }; @@ -10418,28 +10448,29 @@ in with self; { pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; plyr = derive2 { name="plyr"; version="1.8.4"; sha256="1igar5pcjqh0jyxv0z3jah8rz617vfa86vw0r5c7c031b7bj5db0"; depends=[Rcpp]; }; - pmatch = derive2 { name="pmatch"; version="0.1.4"; sha256="1d04q3kh46pha4yn5xy6ax7qkw9bwrxfkh5x6y4nwsby5j3xw2c0"; depends=[dplyr foolbox glue magrittr purrr rlang tibble]; }; pmc = derive2 { name="pmc"; version="1.0.3"; sha256="06bsab09i9ydgsjx5i50kdb22ldp4g1v83a01kz3mswybi4lv9w2"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-0"; sha256="1bpfix76ylmn5ds6y0v40mfad7znaa6dj5ngr4mzv96yy6mg13ns"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.1.1"; sha256="07s5b2izsqzryrcasdpa9z7cva03afl2zkb7cpxqgs4bjrd6vprw"; depends=[RColorBrewer rmarkdown shiny]; }; - pmhtutorial = derive2 { name="pmhtutorial"; version="1.3"; sha256="1acrqjannyhg608g8ap3hj2r6krl0js44q8gsyk7lw0s0xr1k67v"; depends=[mvtnorm Quandl]; }; - pmml = derive2 { name="pmml"; version="1.5.6"; sha256="0w12gnjf7l59qws9cn87ay5xglixbpiir53ms6y4r0y3vn7xb8yn"; depends=[stringr XML]; }; + pmhtutorial = derive2 { name="pmhtutorial"; version="1.4"; sha256="02yk19sd3qy5f5lif74rqs2xlpffdkqd45zdz2fg8rkv3m6alal3"; depends=[mvtnorm Quandl]; }; + pmml = derive2 { name="pmml"; version="1.5.7"; sha256="1p189c1728vs2qqhkqajn8c1dpgvs0cs9lh4jmhx4sg7r8awyf08"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.2"; sha256="1s222r0zj630gjsvi28wb5mbz9fky967m9jnpaj8nsqv3k9sgkcc"; depends=[]; }; pmpp = derive2 { name="pmpp"; version="0.1.0"; sha256="1vmv7aav0rvp7kd5f16ym422ygw1wpnwrhmmp2w1c2fl8i263zh9"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; + pmsampsize = derive2 { name="pmsampsize"; version="1.0.0"; sha256="10qps352524k0xkmssv3qxf1jvkvm7zf4pshki7xywcgp1318n57"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; - pmxTools = derive2 { name="pmxTools"; version="0.1.0"; sha256="1a242c85ywk026vb778s8bjc331ww11rb15pai02wbvpw9x4kpa0"; depends=[GGally ggplot2 magrittr MASS PKNCA plyr stringr XML xpose]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocrm = derive2 { name="pocrm"; version="0.11"; sha256="04snn7k8baf2ymjzr3zkxd425r5dq9h6abr5dm10mhfjqj1njpq0"; depends=[dfcrm nnet]; }; + pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.3"; sha256="0lkqxpk5f27ghjia2akzi1c51hk9p9qkw8vysa0qwkbsgasq86p3"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; pointRes = derive2 { name="pointRes"; version="1.1.3"; sha256="0yfzidc93ghpf116lxbx4fr0d71wl79y3nz6mkirx4pli6gb8x8d"; depends=[ggplot2 gridExtra plyr TripleR]; }; pointblank = derive2 { name="pointblank"; version="0.2.0"; sha256="102ra763wwz0445wlvsr975ynrf4ywgggjw8hvwrqkjcvrk4rq8x"; depends=[commonmark DBI dplyr glue httr magrittr purrr readr rlang rmarkdown RMySQL RPostgreSQL stringr tibble tidyr]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.4"; sha256="0vv8j1yz8n2vmmp6bg2i8w3dchdbybsdxn3sk5d1ync2knih8l2s"; depends=[data_table]; }; + pointdexter = derive2 { name="pointdexter"; version="0.1.0"; sha256="1004m3fdl139rvmzs62xja1fiy87vh63wjqgjna2k5bkspjg82r0"; depends=[sp splancs]; }; poio = derive2 { name="poio"; version="0.0-3"; sha256="1smbnqjlicaqq2hswl910yiirzb9zikbk4pqxm9pwpixywj0nkys"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr R6 stringi tibble whoami]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; poisFErobust = derive2 { name="poisFErobust"; version="1.0.1"; sha256="0qgwl5gb2rw043zb0h1rrv038ymsd72r8h9gqdr2xkfbi3mnr24r"; depends=[data_table glmmML]; }; @@ -10455,7 +10486,7 @@ in with self; { pollen = derive2 { name="pollen"; version="0.71.0"; sha256="0g0g6n8y87jyk7l4s6xpdk60dz4lkg2xp5c5agakkrah8a233920"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollstR = derive2 { name="pollstR"; version="2.0.1"; sha256="13g5z1hix1bmsxznq5qx82yf445rvvyn67ch9bihxm1hr4cr4sbl"; depends=[httr lubridate purrr stringr]; }; - polmineR = derive2 { name="polmineR"; version="0.7.10"; sha256="0ynb9gpphwm1inyagxj5kfn15jbl0paydfy6hcjm4912ncf5bvri"; depends=[data_table DT jsonlite knitr Matrix pbapply R6 RcppCWB slam stringi tm xml2]; }; + polmineR = derive2 { name="polmineR"; version="0.7.11"; sha256="0vifxnvzh2nvrykpx8y9waps1aqzplvjpxxcfy2z31lyfca646kz"; depends=[data_table DT jsonlite knitr Matrix pbapply R6 RcppCWB slam stringi tm xml2]; }; polspline = derive2 { name="polspline"; version="1.1.13"; sha256="08hz6wlaipjss3cfk0dvr7yy6fc7cd4hqv9finj40kkm5n262xck"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.7.0"; sha256="0cigzpdas6alr3fc6w7dhn2pf4n5qc1jmvdjlqw4mvpajn034hid"; depends=[sp]; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; }; @@ -10464,23 +10495,22 @@ in with self; { polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; polyapost = derive2 { name="polyapost"; version="1.5"; sha256="0r2h51l2y0sj0xahdzfy1lyq4kh166crh2j02sk85q577q9d883y"; depends=[boot rcdd]; }; - polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-1"; sha256="1kw5c4dmgpkbk2a30hh5n6xqpnbh6q2swxsdjkmcmhkwrzm4ylm2"; depends=[lhs MASS]; }; polyclip = derive2 { name="polyclip"; version="1.9-1"; sha256="0r5izja3ns39as40al04vl4jz17d6cgbsb4sj16c9z9l3fzpimf5"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; polyglot = derive2 { name="polyglot"; version="0.2.1"; sha256="1w52vhix5pynx2gz9f71yi9x5cdkp4sbs98zz2d5z993qbbf1wyq"; depends=[magick]; }; polylabelr = derive2 { name="polylabelr"; version="0.1.0"; sha256="1bki35p6a8bgmdwll9sczdicdkvmxcl55vbx5xiabkz58imvcmym"; depends=[Rcpp]; }; - polymapR = derive2 { name="polymapR"; version="1.0.18"; sha256="0frb5s3w8jsk10wscmlpjnkqrij0c99pag0wxysgj5cbr8b9d0gh"; depends=[combinat doParallel foreach igraph knitr MDSMap]; }; + polymapR = derive2 { name="polymapR"; version="1.0.19"; sha256="11mv16ixcsi0n8hkmm8vfsdk53i7gfixmbfyzhlhndlnakw0l5hj"; depends=[combinat doParallel foreach igraph knitr MDSMap]; }; polynom = derive2 { name="polynom"; version="1.3-9"; sha256="1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"; depends=[]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; polysat = derive2 { name="polysat"; version="1.7-3"; sha256="155zcrjvpnqdzakmxqds17wmn5kl4rrkv9bqlxq8hrrly3nf6ynz"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomdp = derive2 { name="pomdp"; version="0.9.0"; sha256="1g4q2m4n80jip81kkd7kp52sxr7vzqnbmx79j28rgiyv9zw6b8is"; depends=[igraph]; }; + pomdp = derive2 { name="pomdp"; version="0.9.1"; sha256="02rapzbinpp2a12k1mr113igk6mv35yv3j3n67yqj8kg7wvbqyba"; depends=[igraph]; }; pomp = derive2 { name="pomp"; version="1.19"; sha256="02pvbqpnpjr24q0zn5kkqma6ry9qjc6mxz51rwl2m3k8f1m5v9g0"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; pompom = derive2 { name="pompom"; version="0.2.0"; sha256="1alz3lrj7m16vhymsvvrcmf0kmgx88q2f3v4j6wiciqv77bnyai1"; depends=[ggplot2 lavaan qgraph reshape2]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; - pool = derive2 { name="pool"; version="0.1.4.1"; sha256="1a8kyfwylr8gl2z2w2fmf6657yqvw0ylf1pxg00flddf8fnwbh0w"; depends=[DBI dbplyr dplyr later R6]; }; + pool = derive2 { name="pool"; version="0.1.4.2"; sha256="19xspgzvhj9kzdk4pmsh8qd0lz3ly5qvxyp49l8qbgwrnj4jvza6"; depends=[DBI dbplyr dplyr later R6]; }; poolVIM = derive2 { name="poolVIM"; version="1.0.0"; sha256="19yw6pp5l3jmla4wjbvpjq132f645yks49pzsdv123f3qfr8f0m6"; depends=[EmpiricalBrownsMethod Hmisc ranger]; }; poolfstat = derive2 { name="poolfstat"; version="1.0.0"; sha256="15s9zs13x9w5lxxibkpg40sg2hgaqfx1gbcpdq4yb0zpjpjlg9x1"; depends=[]; }; pooling = derive2 { name="pooling"; version="1.1.1"; sha256="0011w80pxz01scj2sa69m1bcfq797hq3ihpw46fdlxsxavz8prwy"; depends=[cubature dplyr dvmisc ggplot2 ggrepel mvtnorm pracma]; }; @@ -10500,20 +10530,20 @@ in with self; { poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; population = derive2 { name="population"; version="0.2"; sha256="1k0hwh17dyfbbyw8gprsz1klx6l2ncq5mxkmnjmknlnrkpah0bbl"; depends=[abind]; }; populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; - portalr = derive2 { name="portalr"; version="0.1.4"; sha256="0fpzi6vqsr95jkaw3xcgs4m1z0i131vn0vma4l6b71xyp2h4s98h"; depends=[dplyr forecast ggplot2 httr jsonlite lubridate lunar magrittr rlang tidyr zoo]; }; + portalr = derive2 { name="portalr"; version="0.2.1"; sha256="08lm6y1bqzipv8bvr3mv8ylpl3475wnki9acnsy7gab51r5xzmwp"; depends=[dplyr forecast ggplot2 httr jsonlite lubridate lunar magrittr rlang tibble tidyr zoo]; }; portes = derive2 { name="portes"; version="3.0"; sha256="144fipskh6yb6xcz3m5bgh2kwjwa58zaw24y88hzzrdvh9glvyrc"; depends=[forecast]; }; portfolio = derive2 { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; }; postGIStools = derive2 { name="postGIStools"; version="0.2.2"; sha256="1d1igv17bj17d0nmavvn5814nqb7k0hs2cjbaqgjd6ip1wcclfxz"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; - postal = derive2 { name="postal"; version="0.1.0"; sha256="1cg9fyiraawxmmfm15lzxwv7pqizjbyrr5aqm8aqrg928ynjy3q9"; depends=[curl dplyr glue janitor jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; + postal = derive2 { name="postal"; version="0.1.1"; sha256="1b0i3rk01cwmiq6ai025slspbni5jmg2rqcvrcw01x4f8gx3bkjw"; depends=[curl dplyr glue janitor jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; }; postlogic = derive2 { name="postlogic"; version="0.1.0"; sha256="1m4z92y9kjjgz5xh0x74i1sgsybm8gv36l25fbbcwlg1jazwgrwn"; depends=[]; }; potts = derive2 { name="potts"; version="0.5-7"; sha256="194996wr4rnpr42xqfi5yrcnxvd82all2fxki95dklr2qfjxg98a"; depends=[]; }; powdR = derive2 { name="powdR"; version="0.2.0"; sha256="13jaq3hzj0nfzwrdwilazr7xcp41ahc9i2ysm5irwn356z3xf2xd"; depends=[baseline ggplot2 ggpubr nnls plotly reshape shiny shinyWidgets]; }; powdist = derive2 { name="powdist"; version="0.1.4"; sha256="1my88ag5q9hwkn2wy79jl9008gpvg0bsrnyc81gkdfi7pjh2mp1z"; depends=[gamlss_dist normalp rmutil]; }; - poweRlaw = derive2 { name="poweRlaw"; version="0.70.1"; sha256="04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"; depends=[VGAM]; }; + poweRlaw = derive2 { name="poweRlaw"; version="0.70.2"; sha256="1asr6ikr7hmj78jyg8r1gwvcjg14addkxdiz92nh06lv71a183r4"; depends=[VGAM]; }; powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; powerCompRisk = derive2 { name="powerCompRisk"; version="1.0.1"; sha256="11xprjn9hzi8gxrsi7wivwgchg9h2apgxa63fp466ngjfy5ybxf4"; depends=[mvtnorm]; }; @@ -10527,7 +10557,7 @@ in with self; { powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; }; ppcc = derive2 { name="ppcc"; version="1.1"; sha256="0c22nkp6c6rl2d6c868pnrda1l6h9bxssmdbca3pdc5s8wjxi0nd"; depends=[]; }; - ppclust = derive2 { name="ppclust"; version="0.1.1"; sha256="10fcyayda634lg5g992g21casqx5k0jni9r30km5rczzib7cz9gg"; depends=[inaparc MASS]; }; + ppclust = derive2 { name="ppclust"; version="0.1.2"; sha256="0q21vsvsdr09dggsb15syw39414bjp5lf4d7hnz0p2sc2v317lh0"; depends=[inaparc MASS]; }; ppcor = derive2 { name="ppcor"; version="1.1"; sha256="1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a"; depends=[MASS]; }; ppgmmga = derive2 { name="ppgmmga"; version="1.0.1"; sha256="16pvpfx353wjn317d3gxfgv6g20prnzwyqrmk0n4pz646mxq9i19"; depends=[cli crayon GA ggplot2 ggthemes mclust Rcpp RcppArmadillo]; }; ppitables = derive2 { name="ppitables"; version="0.4.0"; sha256="0hm1vgyjcr9wm0xjx39f940mawkdd8j75cbih3xmcs6qnblv16p9"; depends=[tibble tidyr]; }; @@ -10537,14 +10567,14 @@ in with self; { ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; }; - prabclus = derive2 { name="prabclus"; version="2.2-6"; sha256="0qjsxrx6yv338bxm4ki0w9h8hind1l98abdrz828588bwj02jya1"; depends=[MASS mclust]; }; + prabclus = derive2 { name="prabclus"; version="2.2-7"; sha256="0h2nml8ri27mhfs2p6ngb6kfd6lyq30sc6813yybpskkrb6gs1pb"; depends=[MASS mclust]; }; pracma = derive2 { name="pracma"; version="2.2.2"; sha256="18zhni05gwnxbphl6bmjjxmsgg5wwnnkwlb4g971cqyw3dsd83ki"; depends=[]; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; - prais = derive2 { name="prais"; version="1.0.0"; sha256="176878dyfqfx9x2cd97c43qb0gn0rs04jn3268n9yksfsxmrr4wx"; depends=[]; }; + prais = derive2 { name="prais"; version="1.1.0"; sha256="0x39ga8gd2xx3xnd2233ygcrgh1jwfnb631dl07s60i5zb3fs080"; depends=[]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; praznik = derive2 { name="praznik"; version="5.0.0"; sha256="01xbhcgvq6mf89ryh2gif7aa9956kpka3j4mqaxlglxs53vdrfnk"; depends=[]; }; - prc = derive2 { name="prc"; version="2018.8-17"; sha256="13w6nqid3dqmzr39g14g0kgx727qvimyb20x0i206lj37cl347i2"; depends=[kyotil nlme]; }; + prc = derive2 { name="prc"; version="2019.1-23"; sha256="1aw02sj7kkzzkrxs1jpm2skfz2jrd7fyqlfc1mvkqwac39c6a9ma"; depends=[kyotil nlme]; }; prcbench = derive2 { name="prcbench"; version="0.7.3"; sha256="0xdmwjhxpcdaiqawhmlpr4ddlx22xk3rywa70jpm1vk5hc9pwivk"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.1.5"; sha256="1hfr0jijnj5nd25rh16i81bsz8kwz0q9vmn7bqgy467cwvypg9k2"; depends=[class dplyr ggplot2 irr lpSolve purrr tibble tidyr]; }; @@ -10552,7 +10582,7 @@ in with self; { preText = derive2 { name="preText"; version="0.6.2"; sha256="0pcnqssv542cfajzrqfsbq0jf628nnmcb3nryvd7d5wk4wdkji4q"; depends=[cowplot ecodist ggplot2 proxy quanteda reshape2 topicmodels vegan]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precrec = derive2 { name="precrec"; version="0.9.1"; sha256="0kppl4x8ji8hzll5wss1nzlk8qvf4g78f14x4c2b8dcxjikgl939"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; }; - prediction = derive2 { name="prediction"; version="0.3.6.1"; sha256="1znxpacd79fjkf84w3493p1vmafanqfxsspwpwpkmda323bsxj0n"; depends=[data_table]; }; + prediction = derive2 { name="prediction"; version="0.3.6.2"; sha256="0kx7xbm2j6c8h6gk1iig4vfpg877psg16j74hl7zc2mv40sc6dy5"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="1.0.1"; sha256="06zspg1v0x1qqaah7xj5jdaqjv7asnzmgybyyzx3j26v4h59p350"; depends=[ggplot2 lme4 Matrix nlme numDeriv pbkrtest plyr]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.0"; sha256="1xmzdv35hxnslffkj8nbahhxrxmv7995pkdq2igw72x9wbryqlhs"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; @@ -10567,7 +10597,7 @@ in with self; { preprosim = derive2 { name="preprosim"; version="0.2.0"; sha256="1z10ranfal51vzsnndfaw5aqddh2w1xx8h50j1p7gx4fi90d0waq"; depends=[caret DMwR doParallel e1071 foreach ggplot2 reshape2]; }; preproviz = derive2 { name="preproviz"; version="0.2.0"; sha256="0jb85qkzywsd2iyfynd8ngkc136m4qc38phc3fgxm2qw30dacmyh"; depends=[caret ClustOfVar DMwR ggdendro ggplot2 gridExtra randomForest reshape2]; }; preputils = derive2 { name="preputils"; version="1.0.2"; sha256="0cww3x7375ck56cm14ssalvpgvsdi4myr3p19zy4fcjy6fgyyxc5"; depends=[data_table]; }; - prereg = derive2 { name="prereg"; version="0.3.0"; sha256="1lnpdwgri5rcwbwz9wh059rl6nrhlp5342gn9rnyp0gqwyni9hpd"; depends=[rmarkdown]; }; + prereg = derive2 { name="prereg"; version="0.4.0"; sha256="1jhlgp7ajq6mx7gn4kf3b7wqzs3v0678pa1r6p4mgvvynic8rnqj"; depends=[rmarkdown]; }; presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.6"; sha256="0yjpwxdy9mkj2k33zvd5klyv4ava46i19yls87n0bvf79y90ikpy"; depends=[]; }; @@ -10592,6 +10622,7 @@ in with self; { prioritylasso = derive2 { name="prioritylasso"; version="0.2.1"; sha256="1wcykrhv1d762h7k7qkvnsjk7l6sincmh6vc6wmgpmmwx5nch70x"; depends=[glmnet survival]; }; prism = derive2 { name="prism"; version="0.1.0"; sha256="0d2llrpw5y0svrdzbk52pjrfp76lknrw4r8ciqq0cq3l6kbynh9r"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.0"; sha256="1fnhg6vqdabdnhvgd19vnkfrdgz8a53snfrx6m6mmdwb6cvavb8m"; depends=[data_table dplyr httr magrittr passport rlang rnaturalearth rnaturalearthdata rvest stringr tibble tidyr xml2]; }; + prithulib = derive2 { name="prithulib"; version="1.0.2"; sha256="12ybksrvxzc5gjz8m38cs35b7r3kd8m0zqm2c67pqw38vq82sjxm"; depends=[]; }; pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; proPubBills = derive2 { name="proPubBills"; version="0.1"; sha256="1fpn9x31jjahdyk0f30mbb3ijj4dsghrq9q94r04pjsgr2jw23zx"; depends=[dplyr httr stringr]; }; prob = derive2 { name="prob"; version="1.0-1"; sha256="05qcrsl790hn7p3ap4zj5i1b1sf674wvvrh42lyb7a0nsc09iq9n"; depends=[combinat fAsianOptions]; }; @@ -10630,10 +10661,9 @@ in with self; { projections = derive2 { name="projections"; version="0.3.1"; sha256="12vskql6x04jzik72a0vx83amfj01w9f7mxn052vsv7aaljbi124"; depends=[distcrete ggplot2 incidence]; }; projector = derive2 { name="projector"; version="0.0.2"; sha256="15n5b2xgs0zj87pc3svlmnkjrxgkjkx941g8bs3ms90fg7nh2drc"; depends=[assertthat dbscan plotly RColorBrewer RcppAnnoy Rtsne shiny shinyjs shinythemes]; }; projects = derive2 { name="projects"; version="0.1.0"; sha256="064l9dq3k56jiqf1p5yg7pmbz8kx95gpkdn7i2sqxghl3zpv1gsi"; depends=[checkmate dplyr fs magrittr purrr readr rlang rstudioapi stringr tibble]; }; - projmanr = derive2 { name="projmanr"; version="0.2.1"; sha256="0pj2a79xnhkwik7lq1gm9jv30pkjgv057yd9nlmb58mf2097i7an"; depends=[ggplot2 igraph mc2d R6 Rcpp tidyr]; }; projpred = derive2 { name="projpred"; version="1.1.0"; sha256="03lfzlhrch7l87vmpfvyiggq12bzj45kkqp0dy307jnrvfzx9lb1"; depends=[ggplot2 loo Rcpp RcppArmadillo rngtools]; }; promises = derive2 { name="promises"; version="1.0.1"; sha256="0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2"; depends=[later magrittr R6 Rcpp rlang]; }; - promote = derive2 { name="promote"; version="1.1.0"; sha256="04gwlln17dl4i9rzmr8gjdg29w9f3hlsy83dfiv91dg5i17nm55w"; depends=[httr jsonlite stringr]; }; + promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; }; propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; @@ -10642,19 +10672,21 @@ in with self; { proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; propr = derive2 { name="propr"; version="4.1.1"; sha256="06gydd4a6lra25lsvn3jljihjinsmqbyvin9yd9bm2j9vg863wdp"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; - protViz = derive2 { name="protViz"; version="0.3.1"; sha256="1im3ajimycsc1zpzbihxlsibjk0462q0vldy7v5ypsqnjbi1ndxm"; depends=[Rcpp]; }; + protViz = derive2 { name="protViz"; version="0.4.0"; sha256="150i2q4nakz28f39kmhrchz4qsr8ax6y02512md94k8hq4hamxg1"; depends=[Rcpp]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; }; protiq = derive2 { name="protiq"; version="1.2"; sha256="1d5wr9w540a79i57nr0arn5xg7s6jhhy5nrgsk8r3ljidld2s2sa"; depends=[graph mvtnorm RBGL]; }; proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; - protoclust = derive2 { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; + protoclust = derive2 { name="protoclust"; version="1.6.3"; sha256="1jwfzlxyi2mx3mry2xr2glc6fm6a9jc8fhsdzjbb4zgx7vx2vpqv"; depends=[]; }; protolite = derive2 { name="protolite"; version="1.8"; sha256="05w5lgf255agj70qdyjm64ci9j0pncz0k0bxhq2cxjbkv09169lr"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; - prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; + prototest = derive2 { name="prototest"; version="1.2"; sha256="07g58hq2qdpczqhjsv6dq1bya9rs958r103n91icw5yc19bvyhi2"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; protr = derive2 { name="protr"; version="1.5-2"; sha256="0gy483nznrh9b3mw9vlkwfwm9zxfm6xy5gz0vzqvfr12wgb9bd67"; depends=[]; }; - proustr = derive2 { name="proustr"; version="0.2.1"; sha256="17syaxfrwm9kh5q825hj7bsrvi4h9avpdabw9y0vq20y87w8cq1s"; depends=[assertthat dplyr magrittr purrr rlang SnowballC stringr tidyr tokenizers]; }; + proustr = derive2 { name="proustr"; version="0.4.0"; sha256="1qp4v4vb1qh137qn7zi1d2g999z17kq6kpyxy9355mj8c49iy8pn"; depends=[attempt rlang SnowballC stringr tidyr tokenizers]; }; provParseR = derive2 { name="provParseR"; version="0.1.1"; sha256="0wpwq589c2di8rqwynvj83061m30abi2j877wcq3gh8fz0fbxb9q"; depends=[jsonlite]; }; + provSummarizeR = derive2 { name="provSummarizeR"; version="1.0"; sha256="008c8ih96hyi7db6sm1bz4ws6zr6fzyygngiv2xzafilyppaab09"; depends=[dplyr provParseR]; }; + provViz = derive2 { name="provViz"; version="1.0.4"; sha256="1iy8kmvxq43m7258dwmgyh13q261h0f258qjx1sqxi29h760hy9i"; depends=[]; }; provenance = derive2 { name="provenance"; version="2.2"; sha256="1g70s5pwgb3cvw4vgxxqp4gi5qi3d02ldq09n4kildms4shxgsmn"; depends=[IsoplotR MASS]; }; proxy = derive2 { name="proxy"; version="0.4-22"; sha256="0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"; depends=[]; }; proxyC = derive2 { name="proxyC"; version="0.1.0"; sha256="0w1cnfd4g39arksx05pkd17csh2w9xmzk9aw2sk9pkv25fpgcib6"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; @@ -10671,7 +10703,7 @@ in with self; { pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseudorank = derive2 { name="pseudorank"; version="0.3.8"; sha256="1nj2cq8v8gj8wg23yrn8v21jwgd572gbz1wplpaxhk5v2ckhf1p0"; depends=[doBy Rcpp]; }; - pseval = derive2 { name="pseval"; version="1.3.0"; sha256="1iv3fa7ar9i7v9j5axbasmn8l8nvry4zvmb7fd8aql82f22szmbj"; depends=[survival]; }; + pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; psgp = derive2 { name="psgp"; version="0.3-18"; sha256="1jfkqwqnmzj3m1d9gxbp2rjkbqb0di75gh78zg861by5qhhaz1a7"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; psica = derive2 { name="psica"; version="1.0.1"; sha256="1xgq2xqs26v6y91b2b23b5imzjgxv5dihbn69yyjq91a3nvrfk7p"; depends=[BayesTree gridBase party partykit randomForest Rdpack rpart]; }; psidR = derive2 { name="psidR"; version="1.9"; sha256="0ljfjxsj6krxyk3ss1n0ccymca4hiwkp9fdb1h1l4rqm0dsj8jj8"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; @@ -10680,13 +10712,13 @@ in with self; { pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-18"; sha256="1iwsw52miil1v1yl99mzl28qi8gdjr56rlasmh8faqjlpn9z477p"; depends=[]; }; pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; - pssmooth = derive2 { name="pssmooth"; version="1.0.1"; sha256="0g43fkls36lsv3z79326x6g1d370dym8879700lq29wl5fslp3an"; depends=[chngpt MASS np osDesign]; }; + pssmooth = derive2 { name="pssmooth"; version="1.0.2"; sha256="09x5dhwx40j1fy7bzj0z0lj7sbjlwrqn2b8ph0387prbbp9q2lxs"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; - psych = derive2 { name="psych"; version="1.8.10"; sha256="0n3frgzsfmnan6cp3yyq5h6c28v5pd7q5a42pp6byaa7n7d1v478"; depends=[foreign lattice mnormt nlme]; }; + psych = derive2 { name="psych"; version="1.8.12"; sha256="0hvp0dkkkn0szaf5rkirr3kb8qmr4bxwl775m5wmpvn1kc25w5vf"; depends=[foreign lattice mnormt nlme]; }; psychReport = derive2 { name="psychReport"; version="0.4"; sha256="0025m39gxjv63p230xg6vmyndni8bqx5nfs6dzz7xlc8qys56jqs"; depends=[cli crayon dplyr ez testthat xtable]; }; - psychmeta = derive2 { name="psychmeta"; version="2.2.1"; sha256="0x5yxzd78xfz9sbbzx4yxa1vbgwj70fiiiypkk0bai5wjhx40c8v"; depends=[boot cli crayon data_table dplyr ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; }; - psycho = derive2 { name="psycho"; version="0.3.7"; sha256="0n9cj841mjf661cik6xyd7hhhw1dm0yshhg8fh3iq15gn88bgmqi"; depends=[BayesFactor broom coda DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lme4 lmerTest loo MASS MuMIn nFactors ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; }; + psychmeta = derive2 { name="psychmeta"; version="2.3.0"; sha256="1f7dv62wc22l8xcrvaxayljli463nbq7j881r063wszxlxxwxw2a"; depends=[boot cli crayon data_table dplyr ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; }; + psycho = derive2 { name="psycho"; version="0.4.0"; sha256="1n6r3bh3r24pifaawvasg4slbywky9bnz3zd9z9s9vrb2aq339nx"; depends=[BayesFactor blavaan broom DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lme4 lmerTest loo MASS MuMIn nFactors ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-5"; sha256="0majai4ivs140x2bq2sk61widyadmv2l64sjyy0g8kcpm8gbgh7b"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychotools = derive2 { name="psychotools"; version="0.5-0"; sha256="145x1zdjvasdyf72hp6wdsw0m1r5c97gzzlbnnmdbcrjqh5zyglb"; depends=[]; }; @@ -10701,7 +10733,7 @@ in with self; { ptw = derive2 { name="ptw"; version="1.9-13"; sha256="0iighsx6xn8nbw4qpzmwgi4czmr5m8yrr7fzm7mx7cvx2r5ffmbq"; depends=[nloptr]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubchunks = derive2 { name="pubchunks"; version="0.1.0"; sha256="1mi5vzm80fm0vbh9kmmsh7kmgc915i1f1yi2kyw2d3mg98jld9xj"; depends=[data_table xml2]; }; + pubchunks = derive2 { name="pubchunks"; version="0.2.0"; sha256="119ihi6xi9k3p5lv2qkch2jc2fqmf8h0wi7mqh57asg7n6f0qb6r"; depends=[data_table rcrossref xml2]; }; pubh = derive2 { name="pubh"; version="0.4.3"; sha256="18n6jyidq01gxbqvfal7ipgpjvfkdy71niy7w24dvvxnvcy7hc4l"; depends=[bookdown car desctable effects Epi epiR epitools knitr latex2exp lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR sandwich survival tactile]; }; pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.13"; sha256="17pb5y5savh9iga3i7pyp32j41jwfac0vl538gln3n371x5fjh2r"; depends=[boot R2HTML RCurl XML]; }; pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; }; @@ -10710,7 +10742,7 @@ in with self; { puniform = derive2 { name="puniform"; version="0.1.0"; sha256="16s5qk17wnag7fqgslxpayaq6nczaj2izgdkrkcssgjxfwnanzgm"; depends=[ADGofTest metafor Rcpp]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; - purrr = derive2 { name="purrr"; version="0.2.5"; sha256="0dc53zzan3km2l9lzxjixcv6yn7dhw2ppmz8qf2awhak7x2qm9m4"; depends=[magrittr rlang tibble]; }; + purrr = derive2 { name="purrr"; version="0.3.0"; sha256="0mzbf9ca8qdrqkrh9x7yzqxiab9bk10ql46qr1wl2bgbflminzda"; depends=[magrittr rlang]; }; purrrlyr = derive2 { name="purrrlyr"; version="0.0.3"; sha256="0cx3vzrkd8dv6cgpdhjn119fyn2kvixvkabvf2h5l6ab61x54wpx"; depends=[BH dplyr magrittr purrr Rcpp]; }; pushoverr = derive2 { name="pushoverr"; version="1.0.0"; sha256="1zazrx0szx21ymn7zlkfqkhid0ar8jblnpnf5nycj0p7dbh6d0bd"; depends=[assertthat httr]; }; pvar = derive2 { name="pvar"; version="2.2.5"; sha256="1a5dxhki5nd5s1d5wwnc1dkg7mdib2s8w1i0l8mdg3f1g3l00klz"; depends=[Rcpp]; }; @@ -10726,16 +10758,15 @@ in with self; { pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; pwt9 = derive2 { name="pwt9"; version="9.0-0"; sha256="1y8zildqnagrp8vf6d8ips0896yp0qcvwy600yv1bqdnglvmn62b"; depends=[]; }; pxR = derive2 { name="pxR"; version="0.42.2"; sha256="1q1xwsrs1ch1a1d1clz6sl7vnsyz5wjqivczk5n5d772y4w60bz5"; depends=[plyr reshape2 RJSONIO stringr]; }; - pxweb = derive2 { name="pxweb"; version="0.8.3"; sha256="1rs113snv3fkxdlj5y3m2nwkddpx0322n8k23n9dqfinhwr7hzfy"; depends=[checkmate httr jsonlite]; }; + pxweb = derive2 { name="pxweb"; version="0.9.1"; sha256="00xp7idhsirmpl970yxnxp6xn128jm5kwsmdwhys32wlbd9kzspc"; depends=[checkmate httr jsonlite]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.0.2"; sha256="148b8l5a8c636rgm8dwd8v6ggw9qmkafc5a40bciqc4rk09lfhl3"; depends=[robustbase]; }; pyramid = derive2 { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; }; - pzfx = derive2 { name="pzfx"; version="0.1.0"; sha256="1j4jrkn1qh6902xz0zmyj1y2nzpy2cbvv8qryb9gxm5jpk6zy97i"; depends=[xml2]; }; + pzfx = derive2 { name="pzfx"; version="0.2.0"; sha256="1h936iplhb3rnfvwvynsh1zfn3j3r0p1shr25wcn1z8axypdbsgi"; depends=[xml2]; }; qCBA = derive2 { name="qCBA"; version="0.3.1"; sha256="0lr97hig9c4l9k7vjalvgar4f1dic1lqf91li4q63j07lgdyvh4c"; depends=[arc arules rJava]; }; qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; - qPCR_CT = derive2 { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; }; qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; qad = derive2 { name="qad"; version="0.1.0"; sha256="046zyzgmd4rygl871xri02ylkyzl6yszn7zjc47kq7bb8jj0c1ya"; depends=[copula data_table doParallel foreach ggplot2 plyr]; }; qap = derive2 { name="qap"; version="0.1-1"; sha256="0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"; depends=[]; }; @@ -10753,8 +10784,8 @@ in with self; { qdapTools = derive2 { name="qdapTools"; version="1.3.3"; sha256="0a28jn57d2fas3009cm10z07fq77ql3ffcrhcxsiimb57179wj0n"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.0"; sha256="067wnwwz8s0yxig13wrjq37w62kf8p5pa8my5lfpc1ik1b7iysby"; depends=[Rsolnp]; }; - qgam = derive2 { name="qgam"; version="1.2.2"; sha256="0761rkkfaxi3scfdici9a8sz6sbs5d6p9wnffdlmyn5jmqj9g24q"; depends=[doParallel mgcv plyr shiny]; }; - qgraph = derive2 { name="qgraph"; version="1.5"; sha256="1m078lij70ik6r9nxznbi18bavdsx5ai06417j3bsdipy39xrb85"; depends=[abind BDgraph colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix pbapply plyr png psych reshape2 sem sna]; }; + qgam = derive2 { name="qgam"; version="1.2.3"; sha256="1cn22mnp9k2cipqkp3s3rbm4hifsr0sf5hqq2mrz0y59gi59dcrb"; depends=[doParallel mgcv plyr shiny]; }; + qgraph = derive2 { name="qgraph"; version="1.6"; sha256="0ch0fx4dd6h253s1syd32p70pb6f80h70kg0fdzw74n28crml3r3"; depends=[abind BDgraph colorspace corpcor d3Network fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; qicharts = derive2 { name="qicharts"; version="0.5.5"; sha256="0bl1f64b5n8q9jhzh3rqfyh9613qiy9mhcy2xsn16jyrj4hmj0jd"; depends=[ggplot2 lattice latticeExtra scales]; }; @@ -10764,7 +10795,6 @@ in with self; { qkerntool = derive2 { name="qkerntool"; version="1.18"; sha256="0z03czmh62m740amvws8vdsha6x4zwf0cc8097sc3c894w5xn9q7"; depends=[class]; }; qlcData = derive2 { name="qlcData"; version="0.2.1"; sha256="0n1r7462zmyzkyi7mp3hf7pn7bgw1m1zs9flm3n199kjm8f6yyzy"; depends=[ape data_tree docopt phytools shiny stringi yaml]; }; qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; }; - qlcVisualize = derive2 { name="qlcVisualize"; version="0.1.0"; sha256="13rc4z7rz7vngrkxq09flhszvcbg6i7drdkdp8kmvgcxf0im6lv0"; depends=[alphahull fields mapdata mapplots maps maptools MASS qlcMatrix raster seriation sp spatstat]; }; qle = derive2 { name="qle"; version="0.18"; sha256="0b2g5sgx1p94bwc1fivbqy3avgn8f95vy1m1nzv3y67615pa251n"; depends=[digest expm lhs mvtnorm nloptr]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; qmethod = derive2 { name="qmethod"; version="1.5.4"; sha256="1c64b7jy9llz5dhfnk75yamjva043213gd08dsr27pyjkmbyqms1"; depends=[digest GPArotation knitr psych xtable]; }; @@ -10778,11 +10808,12 @@ in with self; { qrLMM = derive2 { name="qrLMM"; version="1.3"; sha256="1k85d09yvhx3pgmvqrsmhd14hqaah4pdr87vp4kg60dp9w5sydjz"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; qrNLMM = derive2 { name="qrNLMM"; version="1.4"; sha256="0h1jra247flipv4pwww8rn61pj8jxpiaw74f2czs950klnznp1xm"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; + qrandom = derive2 { name="qrandom"; version="1.0"; sha256="1dwk50b0y6mdqh59gqhfi5r39k1qizrkwylxh5j24xz2ry550dy3"; depends=[curl jsonlite Rmpfr]; }; qrcm = derive2 { name="qrcm"; version="2.1"; sha256="0wp6ynckh66gxi569wbvn5szwih4g0c21zrrpz3zfavhqwk7srgf"; depends=[pch survival]; }; qrcmNP = derive2 { name="qrcmNP"; version="0.1.2"; sha256="0psgnz2fdj530wjj14pv5x2889yzphnlsg10lry9i6dvmxd8m47k"; depends=[qrcm survival]; }; qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; - qrjoint = derive2 { name="qrjoint"; version="2.0-2"; sha256="1b8yxlq56z4xgy2k4da75j7gk3l1n6lcl0pzz7c9mx45296d200q"; depends=[coda kernlab Matrix quantreg]; }; + qrjoint = derive2 { name="qrjoint"; version="2.0-3"; sha256="1ymnq8mbvxfdi63f4554mjlix5n864v2nask27pkf3yfxmkr346k"; depends=[coda kernlab Matrix quantreg]; }; qrmdata = derive2 { name="qrmdata"; version="2016-01-03-1"; sha256="192dcsmvl3xbzlk658cfp2sk5fkgbjhjd4g1mrcs8s63hmzbwdzc"; depends=[xts]; }; qrmix = derive2 { name="qrmix"; version="0.9.0"; sha256="1r695d9bmmngvblh9jj0rnjymdaln9w0jywz51wla0bdssssf845"; depends=[MASS quantreg]; }; qrmtools = derive2 { name="qrmtools"; version="0.0-10"; sha256="0mkd4xigz1cg52dldbws3va7251pjzss8z0al25izmp9dbknb3gw"; depends=[lattice Quandl quantmod rugarch xts zoo]; }; @@ -10793,18 +10824,19 @@ in with self; { qsub = derive2 { name="qsub"; version="1.0.3"; sha256="1ri9bmvqakp0r26mypi8nfpf9fvxkkp3cans8ara3s7wscygycxr"; depends=[dplyr glue processx purrr random readr ssh stringr tidyr]; }; qtbase = derive2 { name="qtbase"; version="1.0.14"; sha256="1pcgjycq61x9h52sqr6fz83qjnlpbawvpavnn9hyw2b7jlv3nwfd"; depends=[]; }; qte = derive2 { name="qte"; version="1.2.2"; sha256="0h4kffavw2ii765c4bvwg19nlzk1si8sw09iklwmmb6gdm2v5m81"; depends=[BMisc formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; - qtl = derive2 { name="qtl"; version="1.42-8"; sha256="1l528dwvfpdlr05imrrm4rq32axp6hld9nqm6mm43kn5n7z2f5k6"; depends=[]; }; + qtl = derive2 { name="qtl"; version="1.44-9"; sha256="03lmvydln8b7666b6w46qbryhf83vsd11d4y2v95rfgvqgq66l1i"; depends=[]; }; qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; qtlbook = derive2 { name="qtlbook"; version="0.18-6"; sha256="0kbz7icp6fzl2bgk50fcg8x704aijpz3xbqrzraj7qa3z8gakaj6"; depends=[qtl]; }; qtlc = derive2 { name="qtlc"; version="1.0"; sha256="17ij4alx4qg556b5kq7qsjygj5jf8iyx1f0v52pvx1z2sm6nppww"; depends=[plot3D rgl tiff]; }; - qtlcharts = derive2 { name="qtlcharts"; version="0.9-6"; sha256="021gx5qzrc7jbgpp91mn36czr7fsh37wf3c7cifcv3xwzc54j4dd"; depends=[htmlwidgets qtl]; }; + qtlcharts = derive2 { name="qtlcharts"; version="0.11-6"; sha256="114h19d741abyz7c0w0lir7m7816hw92lnd4shb3d9m94a9dwxqp"; depends=[htmlwidgets qtl]; }; qtlhot = derive2 { name="qtlhot"; version="1.0.4"; sha256="0gf0fsq91g830vqg5kz01zznm40qpjncy964ccvmms3i6d3hxd9m"; depends=[corpcor mnormt qtl]; }; qtlmt = derive2 { name="qtlmt"; version="0.1-6"; sha256="023h60z8d05832l2g7mg776hfjb0i7xpvhz3i899rc3h5pgjd94c"; depends=[]; }; qtlnet = derive2 { name="qtlnet"; version="1.4.4"; sha256="1r9r6wp71i36ffcdxiljvh2c8nva868x2dx6bkinbaq8cixww2cx"; depends=[graph igraph pcalg qtl sem]; }; qtpaint = derive2 { name="qtpaint"; version="0.9.1"; sha256="08x7qcxwkaclwv1p4s9a5k95x35hzp69whiihkakjv5blm83m3g9"; depends=[qtbase]; }; + quRan = derive2 { name="quRan"; version="0.1.0"; sha256="108d797l9ggggc5b61pl7f6avzknmnnib2ys5vrg385zfbx9srvw"; depends=[]; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; quadmatrix = derive2 { name="quadmatrix"; version="0.1.0"; sha256="0nngrvvbalmrr6g9bq9f5qrllvwfq5p1b9yhs4zb098s3wga8jms"; depends=[geigen matrixcalc]; }; - quadmesh = derive2 { name="quadmesh"; version="0.2.0"; sha256="0fchkqnjm2kdv8a3g9hhbcrhq7nvcmx7qgm6by495gwabphl71jn"; depends=[gridBase png proj4 raster viridis]; }; + quadmesh = derive2 { name="quadmesh"; version="0.3.0"; sha256="1ypjdihrd8d5hwn0h3dfv922x4dj599i7p5zicqpdfmh013408d1"; depends=[geometry gridBase png raster reproj sp viridis]; }; quadprog = derive2 { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; }; quadprogXT = derive2 { name="quadprogXT"; version="0.0.3"; sha256="1pa494xpmxanbqcpylhhhm4bnsd1vkrixnmi2rg2bdw21x77hlmb"; depends=[quadprog]; }; quadrupen = derive2 { name="quadrupen"; version="0.2-6"; sha256="0din0b4iaixjfkdiy4gbl83hq6z7v7aca2xk65hzfsalp6llk91x"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; @@ -10815,7 +10847,7 @@ in with self; { qualpalr = derive2 { name="qualpalr"; version="0.4.3"; sha256="1hlssqj2129796d00gnip3ih5b705qasw0hkj25xfz7xak0vdbkm"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; - quanteda = derive2 { name="quanteda"; version="1.3.14"; sha256="1qnnv248hhr1fpbq12plkhk4nqijvx3kbcgl0vbh9q51ka3rxqbh"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; }; + quanteda = derive2 { name="quanteda"; version="1.4.0"; sha256="1787v6fsglz7a6zmigx50s83qfhgz17n4bw616zl7nnky9abhyyc"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantities = derive2 { name="quantities"; version="0.1.2"; sha256="01h0d2cmqqyqch98d8pgv3n2rvp3vc3sby95srahgcrrlxmmrrvj"; depends=[errors Rcpp units]; }; @@ -10844,7 +10876,7 @@ in with self; { quotedargs = derive2 { name="quotedargs"; version="0.1.2"; sha256="034fhfmfq62yf7akx2i0bim70jq9azkk2h28k79lwax7ysydsjnj"; depends=[]; }; qut = derive2 { name="qut"; version="2.1"; sha256="1wkk4c4f10a1whrspr5yalp7flcxckzxlx187ymmpnz7qcncz619"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="0.9-1"; sha256="1ll71yww8rsbp0qa60w7vdna8yk60cq66cjn5cdk3bkdwyni28yy"; depends=[]; }; - qwraps2 = derive2 { name="qwraps2"; version="0.3.0"; sha256="0xhlb0c955raxrqw202f7jd9c1wkrigh1qs93m2739jkwkyv2n3b"; depends=[devtools dplyr ggplot2 knitr magrittr Rcpp RcppArmadillo rlang tidyr]; }; + qwraps2 = derive2 { name="qwraps2"; version="0.4.0"; sha256="1hw3m06xgw84a5hhfh2i2l5sh96ji05m3l3zx7a2sjsp41aszv2k"; depends=[dplyr ggplot2 knitr magrittr Rcpp RcppArmadillo rlang tidyr]; }; r_jive = derive2 { name="r.jive"; version="2.1"; sha256="0l0bhhp6bdc84pzxi7gnsxx3scycw0zahrnc496wx3j43np9hlsg"; depends=[abind gplots SpatioTemporal]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.3"; sha256="0v612mbzdjr8cq1ffall9hagbwxfv7fh963x8f0w5r84v1m3y2bl"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; @@ -10896,14 +10928,13 @@ in with self; { rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.11.4"; sha256="1fvln3r2zkzhsck53jppchg795qbjbzw0rd688h89if1lkiy51w6"; depends=[plyr]; }; - rLandsat = derive2 { name="rLandsat"; version="0.1.0"; sha256="0j6p0ba76vhzg69frdf4ykiyc8vy0axd4jw26b72j8pl9rdwnn01"; depends=[dplyr httr jsonlite RCurl readr stringr svMisc]; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1.1"; sha256="1w0yi4ygw0l9ydbllqjylp30d401bsf7b6fng6qg3pssbi9v3kln"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; }; rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; rMEA = derive2 { name="rMEA"; version="1.0.0"; sha256="1cxcf2ji2f3kkjlj6lym7zfpmgbbjw7al67dldy2kn9dk2dn087z"; depends=[]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; rMouse = derive2 { name="rMouse"; version="0.1"; sha256="0pzxasap5kwxqq36mb4zi139jllsl4vk06dw2pv9xnwdxiszr3gp"; depends=[rJava]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; - rNOMADS = derive2 { name="rNOMADS"; version="2.3.10"; sha256="1pbbrx91fq5gpjhf6rqyhl9isj3mz3prbh5g5sfg7y63hhn817z0"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr uuid XML xml2]; }; + rNOMADS = derive2 { name="rNOMADS"; version="2.4.0"; sha256="02ygi7x0335730qn5ah8h63b0ana0va13p2fvxnv28n3ynbd1m4b"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr uuid XML xml2]; }; rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.1.0"; sha256="12jwkch3264m6ksl8rdjirwdzm1g8b4050mm6rysw9v57k3v57ji"; depends=[data_table plotly scales]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.2"; sha256="1insdfvcn1pirsnf7nwfia0kzgsmh2zpghgfj2yc35ld1r9j2hp2"; depends=[mvtnorm ssanv]; }; @@ -10914,9 +10945,9 @@ in with self; { rSCA = derive2 { name="rSCA"; version="3.0"; sha256="1ka8p1slqb3a9hfc8z4j7v90k0wn6y35vmwxqaf8jlgwfhhc1v9f"; depends=[]; }; rSEA = derive2 { name="rSEA"; version="1.0"; sha256="0icphv6l23yqjjk7i81y68yjf1fsccbqaxwb55f2izay5lpaalhs"; depends=[hommel]; }; rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; - rSPARCS = derive2 { name="rSPARCS"; version="0.0.2"; sha256="1mhd40fr7s05p0sswz24vvzyw190vj57c6vlfb5pqiaikqf6hhmz"; depends=[data_table foreign geosphere raster sp spatialEco tigris]; }; + rSPARCS = derive2 { name="rSPARCS"; version="0.0.3"; sha256="0s1mjndivx4693wif9l1sg24vwiv1zjxn7sp5c5fqncs0sxpf8ak"; depends=[data_table foreign geosphere plyr raster sp spatialEco tigris]; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; - rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; + rSymPy = derive2 { name="rSymPy"; version="0.2-1.2"; sha256="0jdl8ss3dbgjqrmmppb0ix1gqk9g28pbh6w5sybil046ic83s13i"; depends=[rJython]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.4"; sha256="08i94vvk5i25j40dwn497svgrmz90iwzp6qgiir37wgvx355xwzr"; depends=[]; }; rTephra = derive2 { name="rTephra"; version="0.1"; sha256="045f2sp2j4hiwa9k1vs6cxr59x1yr34jq1z2crasxflsxbwa3xz8"; depends=[]; }; @@ -10925,7 +10956,7 @@ in with self; { rWind = derive2 { name="rWind"; version="1.0.4"; sha256="13ci2xzkjal869zm7llvkm8zrya7vhqy3gizq9py87zsds3h0f4y"; depends=[gdistance lubridate Matrix raster]; }; rWishart = derive2 { name="rWishart"; version="0.1.1"; sha256="1zv35l2nvwwidx5zxfh7a4jgiaq2mqk69xf974994k1ksfvibkmi"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; - rabi = derive2 { name="rabi"; version="0.1.0"; sha256="02ldpkqpdvh0b660j34bppw5j9pl3a2b4vkzaaiq4kcangahg2r6"; depends=[numbers polynom stringdist]; }; + rabi = derive2 { name="rabi"; version="1.0.0"; sha256="1ljs6wgdw045q1acdmci5b3p8qxhhm4d6bdj64nha76fnq2rr76x"; depends=[numbers polynom shiny stringdist]; }; race = derive2 { name="race"; version="0.1.59"; sha256="13jprlnngribgvyr7fbg9d36i8qf3cax85n71dl71iv0y24al1cy"; depends=[]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; @@ -10940,13 +10971,13 @@ in with self; { radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; radjust = derive2 { name="radjust"; version="0.1.0"; sha256="0krryhqid16a6jfb007n0k6rc8r7c808h859a9pjid2jbkg0bm7l"; depends=[]; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; }; - radtools = derive2 { name="radtools"; version="1.0.0"; sha256="0xspd3spfr59nciddx4gmfrw52jr0m0gznqb5rjsarshn9y8x3xf"; depends=[dplyr Hmisc magrittr oro_dicom oro_nifti]; }; + radtools = derive2 { name="radtools"; version="1.0.3"; sha256="115mz5vlhl2lamb6gp3n6ka8yr4j7r2hjb665ir88bb4wrvwiymj"; depends=[dplyr Hmisc magrittr oro_dicom oro_nifti]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2"; sha256="04f9gvwpgrx54dgbjjixlxa2056aqcz2kryn4jplwf5fc0vj1lyn"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.2"; sha256="03613amz11ixgkjhc8rg4vp3ih60g1ibhdjrldr9mazzkak46y91"; depends=[abind expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="1.0.0"; sha256="0ijzchp2w364qvvmqsddw7drwnfyrndwzc911bdlbc39af2s7dgi"; depends=[futile_logger limSolve]; }; railtrails = derive2 { name="railtrails"; version="0.1.1"; sha256="1hi55rcxmr7k3na3rpjqmd5fpgn51bymrp7yxmw45ff7mlzpa5h6"; depends=[tibble]; }; - rainbow = derive2 { name="rainbow"; version="3.5"; sha256="1gcaflb3haw9wpx4wl64vgi30jxn2nrzlm5125hhg647rw7ryp8k"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; + rainbow = derive2 { name="rainbow"; version="3.6"; sha256="11vfcck17d2xjc049ci5i8l1nqv345anmd110gdz7654i1pj9lb3"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincpc = derive2 { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; rainfreq = derive2 { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; }; rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; @@ -10974,16 +11005,15 @@ in with self; { randomizeBE = derive2 { name="randomizeBE"; version="0.3-4"; sha256="1x1lh1rrw7ma2wls0dflz18lk9h0qdy9gb11af95hqpabqc85rd7"; depends=[]; }; randomizeR = derive2 { name="randomizeR"; version="1.4.2"; sha256="0jv0mc40cy4w17jrsb2023l7k7cnzl9czdigl4shq9nx67mccdwx"; depends=[ggplot2 plotrix]; }; randomizr = derive2 { name="randomizr"; version="0.16.1"; sha256="1jj04wvn7qrqpvag4ri9fqkw9815kyxhlcqn2f1m0bb94d5ngwzq"; depends=[]; }; - randomsearch = derive2 { name="randomsearch"; version="0.1.0"; sha256="176grqp6rv4hiyzr9fzx2zz360h5nkrw39gidclgmrp7ckn5qs4v"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; + randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; randquotes = derive2 { name="randquotes"; version="0.1.0"; sha256="1rpcmxkpq8lgfzrjaipf5x573gm6rc31c9fafghiy99c0iphf46w"; depends=[curl jsonlite xml2]; }; randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; }; randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive2 { name="randtoolbox"; version="1.17.1"; sha256="13akf13qi4yhj9gapym05074b1qzk03vgysy81qsd73pd8r107ls"; depends=[rngWELL]; }; rangeBuilder = derive2 { name="rangeBuilder"; version="1.4"; sha256="1jjy1d3kljysm3mqgdszdi6incbmg2di63akxswfaiqcp1m68a6y"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; }; rangeMapper = derive2 { name="rangeMapper"; version="0.3-4"; sha256="0qrcxbh8saflqjmaa18fcyk5cqk6h4rz92zhqckswyqynx6m0cps"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; - rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.0"; sha256="0v0hn46s99hidfp0ln28hffyk3mzydxvqslkyif32zcdj0fxmc7l"; depends=[biomod2 dismo dplyr ecospat ENMeval googlesheets jsonlite MASS raster rgdal rgeos shiny sp spatstat spocc]; }; - rangemodelR = derive2 { name="rangemodelR"; version="1.0.3"; sha256="16pzmiazmfw14xvrlg0k9j15zrmz034hya41zl5z411d8rn0mqva"; depends=[]; }; - ranger = derive2 { name="ranger"; version="0.10.1"; sha256="12z67xkgdmr5cflpd6cln0mn5xxajanqbfwlckv6cfma0gvf2z1j"; depends=[Matrix Rcpp RcppEigen]; }; + rangemodelR = derive2 { name="rangemodelR"; version="1.0.4"; sha256="0y8hdqi04n3pc3iwz82gikn61h42bmfi7iccwgbglk8wkrkg4gy0"; depends=[]; }; + ranger = derive2 { name="ranger"; version="0.11.1"; sha256="1yyg1nppq76jngzffd44brppqrlxqdhv92pyy0gn09rfc0ab37wr"; depends=[Matrix Rcpp RcppEigen]; }; rankFD = derive2 { name="rankFD"; version="0.0.1"; sha256="1zb9gxvsmv46mpw5znskhfjxnwkr59hdixcly6i3r78yaqgca0dz"; depends=[coin lattice MASS Matrix]; }; rankdist = derive2 { name="rankdist"; version="1.1.3"; sha256="1hdafy2zzn7hwl1lx5jksgi974zjn49dwih5s2zdyv4nnmmai003"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; @@ -11000,7 +11030,7 @@ in with self; { rarhsmm = derive2 { name="rarhsmm"; version="1.0.7"; sha256="0pvqa6f0ib1jb0rwc6wv6hfinncb21v2g0y0hsy5l33gdagjw2sz"; depends=[glmnet Rcpp RcppArmadillo]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rase = derive2 { name="rase"; version="0.3-3"; sha256="03jqf5y5vj354m9psp81wzw6d7dfqr76bfjqv9kannsakkj587sy"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; - raster = derive2 { name="raster"; version="2.8-4"; sha256="14pcfznxm5kdwd908axkr9v1l0hzxlrwd8kwrz0liqnfh9cx5rsa"; depends=[Rcpp sp]; }; + raster = derive2 { name="raster"; version="2.8-19"; sha256="1lmhf7p7is8ai7lv7zsj2rdzf83j7ccl4x7a9vwxxa824zy4bkf4"; depends=[Rcpp sp]; }; rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; @@ -11015,25 +11045,27 @@ in with self; { rattle = derive2 { name="rattle"; version="5.2.0"; sha256="099anyq4spb7dbikxb29aacqp4xswr66hxjgxiwcvhm9jjryb33v"; depends=[dplyr ggplot2 magrittr rpart_plot stringi stringr tidyr XML]; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; }; raw = derive2 { name="raw"; version="0.1.6"; sha256="0hnqwa9pwj3k2y0bs6hxrvbwksjyq0q6m73c9hhlafg8g3lkyxnf"; depends=[]; }; + raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; rayshader = derive2 { name="rayshader"; version="0.5.1"; sha256="1qkv25p0n10zgs3r12i8kwgw6188c0k9a80wg9i12mjpy2pbrxmz"; depends=[doParallel foreach imager magrittr png progress raster Rcpp rgl scales]; }; - rbacon = derive2 { name="rbacon"; version="2.3.5"; sha256="1n06fbm1l087z5d1hwys9889ml47hqis1qzd6p8wrchl52qyzbfl"; depends=[coda Rcpp]; }; + rbacon = derive2 { name="rbacon"; version="2.3.6"; sha256="1d96zm0nvg26y56n4pnrkpqfzbw36h1rnp1k6gjj9q1kv2wyqwld"; depends=[coda Rcpp]; }; rbamtools = derive2 { name="rbamtools"; version="2.16.11.2"; sha256="0gzkb1xyrkriv45wq8gv7qfwjslnvwkfkk5jjc4wg5kmm0ydpdzj"; depends=[refGenome]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; rbgm = derive2 { name="rbgm"; version="0.0.5"; sha256="1gz9hxlwmj2ch1ds6mx1nlkwy4fm811jkz5fz3cl6675n11bjdpg"; depends=[dplyr geosphere raster readr rlang sp stringr tibble]; }; rbhl = derive2 { name="rbhl"; version="0.8.0"; sha256="1avx36as99za19acjh7adb72ckdn69rmiwzcrrqxskzny56vxf0d"; depends=[crul jsonlite plyr tibble xml2]; }; - rbi = derive2 { name="rbi"; version="0.10.0"; sha256="0jl2chbrdpjwfc5cavrpslhyiy0awbjxf1i3lijnjlyssf0wkb93"; depends=[data_table ncdf4 processx reshape2]; }; + rbi = derive2 { name="rbi"; version="0.10.1"; sha256="1ajvmqa4zp44nb50gb3adf8xg4vxm15w233dxvdfnxv8sdn1nll6"; depends=[data_table ncdf4 processx reshape2]; }; + rbin = derive2 { name="rbin"; version="0.1.1"; sha256="1rbwm5xc61sva1m3n5hd9vsh7gm4hamswny35zm7j0fyc4v4bzxz"; depends=[DescTools dplyr forcats ggplot2 glue magrittr miniUI purrr recipes rlang rstudioapi shiny tibble]; }; rbiouml = derive2 { name="rbiouml"; version="1.8"; sha256="0qvc896sf6idczbxix3klf56paxf0wpfbmga8qqlcyjasv1dsdql"; depends=[RCurl RJSONIO]; }; rbison = derive2 { name="rbison"; version="0.7.0"; sha256="0v9i45pdjdspc1xw1mm3zmmsdnq5s7s656mkkhssmhj603f3mswg"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; + rblt = derive2 { name="rblt"; version="0.2.3.6"; sha256="0hkgyshryjasmc12yw0n07f92sw33152m6vrvbsrmycws20j4dpy"; depends=[data_table dygraphs h5 shiny xts]; }; rbmn = derive2 { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbraries = derive2 { name="rbraries"; version="0.1.0"; sha256="12vdci4rzjvd419nxh99hpkhjlx86nsmrbjca0am5q0rkc68dgmj"; depends=[crul data_table fauxpas jsonlite tibble]; }; rbtc = derive2 { name="rbtc"; version="0.1-5"; sha256="1yw5b8qgvznchqx0zndvkhcrl9ww4sn92x7khzwc9hlbr32j14ls"; depends=[gmp httr openssl rjson]; }; rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; - rbugs = derive2 { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; rbvs = derive2 { name="rbvs"; version="1.0.2"; sha256="1wzxz2ca8f1phhbqr9p7c8sk09cyrdq5jc45g4ddrqvi2q29k28y"; depends=[]; }; rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; }; @@ -11057,13 +11089,13 @@ in with self; { rclimateca = derive2 { name="rclimateca"; version="1.0.2"; sha256="012p6vj78m43y8n85diaf5z11h4v0p4s898jmlipvsha11q60csn"; depends=[digest dplyr httr lubridate magrittr mudata2 prettymapr purrr readr reshape2 rlang stringr tibble tidyr]; }; rclipboard = derive2 { name="rclipboard"; version="0.1"; sha256="0qphr3qrp0k2gnzk27bgfiq3ff6b8564gmkrjw1kri1p7ilf71wx"; depends=[shiny]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.3.2"; sha256="0ys1nd7690mhwzslyzg8fq1wxr28nz8g6av5iykkrshb8lkxg7ly"; depends=[callr cli crayon desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; - rcompanion = derive2 { name="rcompanion"; version="2.0.3"; sha256="0y29z05k6ankxvff880rkih4bxzcdairp0ps7z8b0v248pkifn1i"; depends=[boot coin DescTools EMT lmtest multcompView nortest plyr]; }; + rcompanion = derive2 { name="rcompanion"; version="2.0.10"; sha256="0k1jpix405m54q1k3k64c5qfaldpsmbhp7pz8ky77l10dvdkmy1i"; depends=[boot coin DescTools EMT lmtest multcompView nortest plyr]; }; rcongresso = derive2 { name="rcongresso"; version="0.4.6"; sha256="1xd07vlbcp3msmwvg2nk7acdx513v2wfbq64na0045rsv2v96m44"; depends=[dplyr httr jsonlite magrittr stringr tibble tidyr]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.3.0"; sha256="0z9kllhk1j7c4sgnd88ngxv7xvr396azg9vr9p6i72ficr7flr64"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; rcosmo = derive2 { name="rcosmo"; version="1.0.0"; sha256="1r9q8y9an2dw9kpnfl7qhnqx136xk05vi1ps52d9n76rr86lw0fw"; depends=[cli entropy FITSio geoR mmap nnls Rcpp rgl tibble]; }; rcreds = derive2 { name="rcreds"; version="0.6.6"; sha256="1sdrdgn53kgcdnxfjs8jh0h538vb3b9ixz74lbnp54yp09jpqsri"; depends=[collectArgs digest jsonlite magrittr]; }; - rcrossref = derive2 { name="rcrossref"; version="0.8.4"; sha256="1q58wngr28a0vrafwhxj8jvh42aprv2v1s68mdbbq30rn28yplj7"; depends=[bibtex crul dplyr DT jsonlite miniUI plyr R6 shiny stringr xml2]; }; + rcrossref = derive2 { name="rcrossref"; version="0.9.0"; sha256="1h2p2rnv8kskn1wi1iy6k497rdalzid75ihmh1gfcg3cix9vdq89"; depends=[bibtex crul dplyr DT jsonlite miniUI plyr R6 shiny stringr xml2]; }; rcrtan = derive2 { name="rcrtan"; version="0.1.1"; sha256="0kcp3gnjmp00i1hsjagpp0dlr6zgpc4y5ihpx93hm4m3fnzcmn7x"; depends=[dplyr magrittr purrrlyr tibble tidyr]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; rcss = derive2 { name="rcss"; version="1.7"; sha256="0sl175x2l6c493b4kvcbxp6ps95d5rgydqmd6fcwwr3in5lhjdky"; depends=[nabor Rcpp RcppArmadillo]; }; @@ -11074,7 +11106,7 @@ in with self; { rdatacite = derive2 { name="rdatacite"; version="0.4.0"; sha256="14p8albilnzf882m499zfps77jrx0zav9wpz3m047xgs2msnwxqw"; depends=[crul jsonlite oai solrium]; }; rdatamarket = derive2 { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; }; rdataretriever = derive2 { name="rdataretriever"; version="1.0.0"; sha256="1a1dbzs1jravbhidv9wcs52qbd6zf7wf26hixpqjwiq8gsq9l5gh"; depends=[]; }; - rdbnomics = derive2 { name="rdbnomics"; version="0.4.3"; sha256="0wq10dcwf2r7w6s8lzqr0iimhahb00g1r488kfzb0jmk5l392a7y"; depends=[data_table jsonlite]; }; + rdbnomics = derive2 { name="rdbnomics"; version="0.4.5"; sha256="0addlsx8brx49ximbb64gacxc6hq14pvarc7mbi8z2xdr6crx32v"; depends=[curl data_table jsonlite]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; rddapp = derive2 { name="rddapp"; version="1.1.0"; sha256="0zdm54hlxqp7r21fwdka33syjsrf6flrvwqm86hpwhg95880ixkk"; depends=[AER Formula lmtest R_utils sandwich shiny]; }; rddensity = derive2 { name="rddensity"; version="0.2.2"; sha256="10530il8fxpgcads6yvj09jwanldlpvjgjqcknl2wly4gmwcwjq9"; depends=[ggplot2 lpdensity]; }; @@ -11082,9 +11114,9 @@ in with self; { rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; rdefra = derive2 { name="rdefra"; version="0.3.5"; sha256="0mj5xpr1xk0r2ph9fvbabmzrb9yqgdaj0bl76xrhkzisdkagf705"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; - rdflib = derive2 { name="rdflib"; version="0.2.1"; sha256="16hm6yfgzng1bv81mjfjx8ywvblk9if2z0jx326k4b0a8fvfijyr"; depends=[dplyr jsonld readr redland stringi tidyr]; }; - rdfp = derive2 { name="rdfp"; version="0.1.2"; sha256="1kznr5p5mhplgpgmc0f4vrs1fwpivwjy52hwfc8k0q0vx53h3fs2"; depends=[curl dplyr httr lubridate plyr purrr readr XML xml2]; }; - rdhs = derive2 { name="rdhs"; version="0.6.0"; sha256="1bni1g1mc3b7fnbs7ssrljdzzci243xsl0m8rvdxh63f3pdznz09"; depends=[digest foreign getPass haven httr iotools jsonlite magrittr qdapRegex R6 rappdirs rgdal storr xml2]; }; + rdflib = derive2 { name="rdflib"; version="0.2.2"; sha256="0l0bhv9z5g7js5jc39avyxa60jps9wgbrybbdx7hqgynm3ypc4mr"; depends=[dplyr jsonld readr redland stringi tidyr]; }; + rdfp = derive2 { name="rdfp"; version="0.1.3"; sha256="1rwb1hhyl6dw94x2fqfmvjz2kvz071nh549kpzd24h7hnqv8ks7x"; depends=[curl dplyr httr lubridate plyr purrr readr XML xml2]; }; + rdhs = derive2 { name="rdhs"; version="0.6.1"; sha256="0vir2yk7szcja1a8mjv2127mbql8g6kvw0hnsk93bdc4kzz0miwz"; depends=[digest foreign getPass haven httr iotools jsonlite magrittr qdapRegex R6 rappdirs rgdal storr xml2]; }; rdi = derive2 { name="rdi"; version="1.0.0"; sha256="1c49mkxfyxhqz8fc155kgy1k5by0y2c1ahy8k6pn9k8l1j4m4m2q"; depends=[beanplot gplots pdist stringr]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; rdist = derive2 { name="rdist"; version="0.0.3"; sha256="1jp3s4293h973dpz0waq9abpd8ibp4gxdyk3bwn7a32zfpk4kjza"; depends=[Rcpp RcppArmadillo]; }; @@ -11103,7 +11135,7 @@ in with self; { re2r = derive2 { name="re2r"; version="0.2.0"; sha256="0xv355h4bps4a0picxmi6i15niq4knlail80fp9xvszyn72pm8gq"; depends=[htmlwidgets Rcpp RcppParallel stringi]; }; reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; reReg = derive2 { name="reReg"; version="1.1.6"; sha256="198vgf3294if9zmvl54pgx6ram63pswpjnh44fy7n60g8nza44bb"; depends=[BB dplyr ggplot2 MASS nleqslv plyr purrr SQUAREM survival tibble tidyr]; }; - reactR = derive2 { name="reactR"; version="0.2.1"; sha256="1abj3lh2vk4pni5gn2vb8sym2j2sx7yvnph86nz9hp6r270d0g86"; depends=[htmltools]; }; + reactR = derive2 { name="reactR"; version="0.3.0"; sha256="1zwxzi35l764gm7nbqciki7610brad4q4j46mfng8ywvk112sgp9"; depends=[htmltools]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; read_gb = derive2 { name="read.gb"; version="1.6"; sha256="17py6al9cwq4jmab7k2164f7hi8943gi8a50d8zpn1xms9l2cnld"; depends=[]; }; readABF = derive2 { name="readABF"; version="1.0.1"; sha256="0w85v8dl337lsyfad3hxwavma1gnhi4wyszdj8npaz37y12nk2gy"; depends=[]; }; @@ -11114,15 +11146,16 @@ in with self; { readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.6.7"; sha256="1nvkhjv3i6l7d15v2abxg4141hrgv2jmc4agxi2d0wv6j1fc1ya1"; depends=[cellranger readr stringi xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; - readabs = derive2 { name="readabs"; version="0.2.1"; sha256="0zm8n036qrh61ywba411x36zlda6n8iq1vv66d4akv55xz91f3bx"; depends=[dplyr readr readxl rsdmx sjmisc stringr tidyr]; }; + readabs = derive2 { name="readabs"; version="0.3.0"; sha256="1pnp5w9qgxzc09pf10yqgbigsbg5m4nrx9xmh6vz1wh4b928qjhb"; depends=[dplyr purrr readr readxl rsdmx tibble tidyr XML]; }; readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; - readbulk = derive2 { name="readbulk"; version="1.1.0"; sha256="0m02isvja0ihvy1fscjdl5f9gfdlmfmabgvpirgd2m9j3lz6mi8s"; depends=[plyr]; }; + readbulk = derive2 { name="readbulk"; version="1.1.2"; sha256="0341sp9jqqci62zx6my4r50dwrysgjppjasx2lf1dj8w5bv559rd"; depends=[jsonlite plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; readit = derive2 { name="readit"; version="1.0.0"; sha256="1sq2spjgdc9rq8cr5i9qjmqd4vcf7cknpx5dndwjdqrv112y8bk9"; depends=[crayon haven jsonlite readr readxl]; }; readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; }; readobj = derive2 { name="readobj"; version="0.3.1"; sha256="1hnmj6ydvdss7jbl3h16ip0g993wdfyfm15r8f78ihjlh84swima"; depends=[Rcpp]; }; readr = derive2 { name="readr"; version="1.3.1"; sha256="1wz496rw0ah433p755n3xac8gh7yzid4xgdjzd1a7wmpkgilvy9k"; depends=[BH clipr crayon hms R6 Rcpp tibble]; }; readroper = derive2 { name="readroper"; version="0.9.1"; sha256="153iy144c4yxcs2cwr73czy69b4fj4q1g77rb8qmvp6blfwdcd71"; depends=[readr]; }; + readsdmx = derive2 { name="readsdmx"; version="0.2.2"; sha256="1ja6fpjsbx5jzv9ys12wkcn3jrj8a2gnxpbswqk6ppckryi9hnp7"; depends=[Rcpp]; }; readstata13 = derive2 { name="readstata13"; version="0.9.2"; sha256="02mqwpzn7n3pqjxivnd1vlfc47xkyiywfz594x0f6vd2dym8rdwd"; depends=[Rcpp]; }; readtext = derive2 { name="readtext"; version="0.71"; sha256="1blcsk1d78q0s1bijsrzrfrvhgbsq3qi1r9w3i51h1r9g3v9p87f"; depends=[antiword data_table digest httr jsonlite pdftools readODS readxl streamR stringi tibble xml2]; }; readxl = derive2 { name="readxl"; version="1.2.0"; sha256="1mwm389skl4ahcwsmhvx31pjkrn6y9igpnhsczwg6yza886q7j19"; depends=[cellranger progress Rcpp tibble]; }; @@ -11142,7 +11175,7 @@ in with self; { recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; recmap = derive2 { name="recmap"; version="1.0.0"; sha256="09aa6480lsrcqwh82rp9sijf720pkbihb5rrc3a74wr5svry7rd2"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; - recombinator = derive2 { name="recombinator"; version="1.0.0"; sha256="0amcpicsk270l9h7qgv764wp09phsffdpi4adcxrsrwiwm274ibw"; depends=[crayon]; }; + recombinator = derive2 { name="recombinator"; version="1.0.1"; sha256="1dbsqig2jjp3zypcqxf9c2brb09pv6xikmh6fhz5vgxy5wkyivks"; depends=[crayon]; }; recommenderlab = derive2 { name="recommenderlab"; version="0.2-3"; sha256="0lgfcwxy97cvi893k1dia3nng3yvclnmv95fszzmkcrf4qi9yy7q"; depends=[arules irlba Matrix proxy registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; @@ -11168,7 +11201,6 @@ in with self; { refuge = derive2 { name="refuge"; version="0.3.2"; sha256="0ksznc72yvcscviqq6iysjkbkklqxff04q0rsh2l8gyy7g7m9415"; depends=[dplyr httr jsonlite tibble]; }; refund = derive2 { name="refund"; version="0.1-17"; sha256="1lz90y3zim0vl2gxiy4zw0qhkvg7i0p64jqabblnlx13f3lzn944"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; refund_shiny = derive2 { name="refund.shiny"; version="0.3.0"; sha256="0r2xrm4wz35wn9zg4vvw2ysl7zzbz9i080vnbrlp4yrhhlkhpkm1"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; }; - refund_wave = derive2 { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; @@ -11186,8 +11218,9 @@ in with self; { regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; regtools = derive2 { name="regtools"; version="1.0.1"; sha256="0807r8721qmdl8ahvlzcvqaq2rfvlvhblwbwdpi79fm7dk8vvq1i"; depends=[car dummies FNN mvtnorm]; }; - rehh = derive2 { name="rehh"; version="2.0.2"; sha256="00wxx6w9ahddrg3lz14cqyg3dn0rfcxwy1z8arhdp1pn8d48pahw"; depends=[gplots rehh_data]; }; + rehh = derive2 { name="rehh"; version="2.0.3"; sha256="07lcy78iw3y5yjv49mqpiz7yn7sk6n8lixqlqhjzg9wql164xrbq"; depends=[gplots rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; + rehydratoR = derive2 { name="rehydratoR"; version="0.5.1"; sha256="01dhfzmabij7dmpcwq9js51579m8s4zy63v5pqq0qgbz9xccn812"; depends=[dplyr jsonlite rtweet tibble]; }; reinforcedPred = derive2 { name="reinforcedPred"; version="0.1.1"; sha256="0lf3lznzvckqg04446pvq35p31fv9ix93rxwv51zq9azk0sx42vs"; depends=[glmnet MASS refund]; }; reinforcelearn = derive2 { name="reinforcelearn"; version="0.1.0"; sha256="025v8flr8q2p473kz760vywczhvx8b4lakm6rasr9ijgxpbd2jpn"; depends=[checkmate nnet purrr R6]; }; reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; }; @@ -11219,10 +11252,9 @@ in with self; { remotes = derive2 { name="remotes"; version="2.0.2"; sha256="0rsjxmhwpr51ilsdjfqn06mj8yr2d7nckcn3arv1ljn23qfkpcxa"; depends=[]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.1"; sha256="115ffrmsg755ynfwywql7xkcnlvv8ch4nlr1ab11i5923fz6vkvl"; depends=[httr jsonlite XML]; }; - repeated = derive2 { name="repeated"; version="1.1.0"; sha256="0cdyzhhv89186q5nwablcjbqvm7ncq2w5d09iidbajrac9wd1y60"; depends=[rmutil]; }; + repeated = derive2 { name="repeated"; version="1.1.1"; sha256="1ni2rp16z73k2yj30v5qw1yg256yd98wm2n5j0lhjjngizzx09rs"; depends=[rmutil]; }; repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; - repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-2"; sha256="0nskwkqm9z2aphpim6pvykhc3fphlsbap3r49nghkwjpngd0qzj8"; depends=[spatstat spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; replyr = derive2 { name="replyr"; version="0.9.9"; sha256="1rniihri2acjgk6dcviv4xj1fa7w7pvx0k8d8l2adi2790k63xib"; depends=[DBI dplyr rlang wrapr]; }; @@ -11235,19 +11267,19 @@ in with self; { reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reports = derive2 { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; }; reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; }; - repr = derive2 { name="repr"; version="0.19.1"; sha256="0bn21h238rrc2vmv3bvsmk25509bgcyppg4r9592xj5zfglh2b0n"; depends=[base64enc htmltools jsonlite]; }; + repr = derive2 { name="repr"; version="0.19.2"; sha256="1mhhzakkagb8z568yx3p2ixs8fcifm7f8l2yq285zrz8jmnpckfx"; depends=[base64enc htmltools jsonlite]; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; represtools = derive2 { name="represtools"; version="0.1.2"; sha256="1zkabch49q23kd1786km5cb9wcaccbxds11v9hwjzsgrs15g5w35"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="0.2.1"; sha256="1ws5gds453xgfili87r35rz1wn2i7jbqissq98csbiddpkgls8sx"; depends=[callr clipr fs rlang rmarkdown whisker withr]; }; reproducer = derive2 { name="reproducer"; version="0.2.1"; sha256="1jxv6j5vavncjwrhwbxiz9a4v3kixgrs08kyk6drmhcc031g1dfv"; depends=[ggplot2 gridExtra lme4 MASS metafor openxlsx reshape xtable]; }; - reproducible = derive2 { name="reproducible"; version="0.2.5"; sha256="0wci51p80z28annm5zjhs5cam30kgclq4fmf0kyzp00dzy7h9yy4"; depends=[archivist backports crayon data_table devtools digest dplyr fastdigest fasterize fpCompare gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl remotes rgdal rgeos sf sp testthat tibble versions]; }; + reproducible = derive2 { name="reproducible"; version="0.2.6"; sha256="0lqgl6gyv74w97skylqxi7c7ijng51fx4mnn251z23cfbip2brh9"; depends=[archivist backports crayon data_table digest dplyr fastdigest fasterize fpCompare gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl remotes rgdal rgeos sf sp testthat versions]; }; reproj = derive2 { name="reproj"; version="0.2.0"; sha256="108grfbhcgw5pp3alwxjfwcydw9qn0v3dhn1fn8dz24xx4wbmz2h"; depends=[proj4]; }; repurrrsive = derive2 { name="repurrrsive"; version="0.1.0"; sha256="1ffldcs30xa4wcd825bgpcmqsndfyxx70dfmbb3c86ic9kq17p01"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.2"; sha256="18ib0qbfw3sih7xs1z4szjqppr7lbj5wx0w0kx80g810m7q27wyp"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; - rerddap = derive2 { name="rerddap"; version="0.4.2"; sha256="0jn5fqjjn4nqn6hyaiadq8xdg7vd23l09h9ax6nq8r5iiizpv249"; depends=[data_table digest dplyr hoardr httr jsonlite ncdf4 tibble xml2]; }; - rerf = derive2 { name="rerf"; version="2.0.2"; sha256="00j5mmlzdky12ixv03f717kxmy7p4szp97c14k47ll6q9nqnxzdq"; depends=[dummies Rcpp RcppArmadillo RcppZiggurat]; }; + rerddap = derive2 { name="rerddap"; version="0.5.0"; sha256="1b18jcwv794sprsp468d4salplwn13hhi1hcc7vjl02y67551dlg"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; + rerf = derive2 { name="rerf"; version="2.0.3"; sha256="1y9ar2fs329q8fxmxg8llcar4xmpibz8bwcrv88yz2nlngcbf8n0"; depends=[dummies mclust Rcpp RcppArmadillo RcppZiggurat]; }; resample = derive2 { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; resampledata = derive2 { name="resampledata"; version="0.3.0"; sha256="09hp97zk31f016d65vq64gv413c6bx1dwqy74ai34xk00flkwady"; depends=[]; }; resemble = derive2 { name="resemble"; version="1.2.2"; sha256="189a6b1y720w9ff8cyqazd2d3v1msbfw8zdqr5rmilxvxmnspccs"; depends=[foreach iterators Rcpp RcppArmadillo]; }; @@ -11273,7 +11305,7 @@ in with self; { revdbayes = derive2 { name="revdbayes"; version="1.3.2"; sha256="09xxy3yk2fwd0113dgsz0kd2k1k1ghjv9ay2n03b5cnxqaksa99s"; depends=[bayesplot Rcpp RcppArmadillo rust zoo]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.4"; sha256="1xd1bvji99mgnz772naz95i0xnrvqdkwxjj7mjblk2qdym95s1d0"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; - revengc = derive2 { name="revengc"; version="1.0.3"; sha256="0hls00hnwq9f72v4dnaqsmz81lzddvma81p38qrl85v792l16q61"; depends=[dplyr mipfp stringr truncdist]; }; + revengc = derive2 { name="revengc"; version="1.0.4"; sha256="1nipkff9zmkdi509qfdrmvsq5c643xd7bzzw5bchxd8nmfqb412i"; depends=[dplyr mipfp stringr truncdist]; }; revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; }; revtools = derive2 { name="revtools"; version="0.3.0"; sha256="0k5cr2qypfjrhv0l4d6hrzc2r6d9ipc279x16jhy3zzvwzgyjf0x"; depends=[ade4 modeltools plotly shiny shinydashboard SnowballC stringdist tm topicmodels viridisLite]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; @@ -11286,7 +11318,7 @@ in with self; { rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfishbase = derive2 { name="rfishbase"; version="3.0.0"; sha256="1p98vsxg6r7ddzi5rzp4zvryvlp9vw7vds5cbr8zbg7by9zanrpm"; depends=[dplyr magrittr memoise purrr readr rlang stringr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; - rfm = derive2 { name="rfm"; version="0.1.0"; sha256="0bd71qk6vrd0jnnwdwlh30mn8v8dwwgmffrd71kbq83gbfp8ry3l"; depends=[assertthat dplyr forcats ggplot2 lubridate magrittr purrr RColorBrewer rlang shiny tidyr]; }; + rfm = derive2 { name="rfm"; version="0.2.0"; sha256="1d07bms5ykfkw0ynfl21fhs9s6yvs44fn570vzi2dj8h5ywbsz15"; depends=[assertthat dplyr forcats ggplot2 ggthemes lubridate magrittr purrr RColorBrewer rlang tidyr xplorerr]; }; rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; }; rfoaas = derive2 { name="rfoaas"; version="2.0.0"; sha256="04wx3d6v9zci6i5k3c4nfdycgjmng7f533b9k84kf1pa4lwp45ad"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.3"; sha256="13jqvww65wzac1c8ajkljz89vi4j76y9ga52w3ygajjzg0rn15l5"; depends=[]; }; @@ -11297,9 +11329,9 @@ in with self; { rgbif = derive2 { name="rgbif"; version="1.1.0"; sha256="1rn4gpl5paf8qmk535y1gg81xdnlglm70spvw2y72kvdl5jyrzhl"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; }; rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; rgdal = derive2 { name="rgdal"; version="1.3-6"; sha256="07yq2bcgjr8my9120v451r567wkxqzh2fqhxmy5iy91aik5bhhxm"; depends=[sp]; }; - rgdax = derive2 { name="rgdax"; version="0.6.0"; sha256="0kls1v9i3fhiyfns41nqqyz4spf5449hc624vwdw86sgbc1w30w8"; depends=[digest httr jsonlite RCurl]; }; + rgdax = derive2 { name="rgdax"; version="1.0.0"; sha256="16ph6n1nyl2v2w51ih6wzkpw0j0hfa3f60q1g6p9zis59j0rh7d9"; depends=[digest httr jsonlite RCurl]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; - rgenoud = derive2 { name="rgenoud"; version="5.8-2.0"; sha256="0ffjw8kqmi0zkbskyw3h38a8iapv7hdi9819x5w9a5gmdmm4yv0h"; depends=[]; }; + rgenoud = derive2 { name="rgenoud"; version="5.8-3.0"; sha256="0p93wf6ghgz2nifxbscb6bhahh5jd2ba7nh1c2mb6fmbxnsi3swv"; depends=[]; }; rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.0.1"; sha256="1v9kd71wpxna1war0rbp91pc5wdqlganmj2c2fc5m5176dnxd2v3"; depends=[httr Rcpp]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.2.6"; sha256="04r8q3mig7sp38f3m9g20xlb0h046c04hhrzg4n06b5wkn7298s5"; depends=[readr sf stringr]; }; @@ -11326,6 +11358,7 @@ in with self; { rhub = derive2 { name="rhub"; version="1.0.2"; sha256="18aq28q4vggbp19l9wcw3dylnyv7sd26wg0i5w8jrva5cq1v2n5j"; depends=[assertthat callr clisymbols crayon desc httr jsonlite parsedate prettyunits R6 rappdirs rcmdcheck rematch whoami withr]; }; rhymer = derive2 { name="rhymer"; version="1.0.0"; sha256="1k15sd5q6a1ijayl585vc54d1zs4nyrxsfck9bn4nlfdiwc5arwf"; depends=[httr jsonlite]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; + ri2 = derive2 { name="ri2"; version="0.1.2"; sha256="0z6mbhrda7fh7a4y2kx3mf1zc1p0k4d76phw3187w50kwvkpb737"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; ridge = derive2 { name="ridge"; version="2.3"; sha256="15m9klxcxj33s8wkxyamc4awzarg2ncahgaz5cg5m926g8haz9c8"; depends=[]; }; @@ -11342,15 +11375,15 @@ in with self; { rintrojs = derive2 { name="rintrojs"; version="0.2.0"; sha256="0qdry88f6ci5g6k0i8mycm9k5ibnmb9zjppjvqqaflw3g3nsnli2"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.5.16"; sha256="0rfl56fdawlhc98451a9lcb6a6m56kw0i7dvd5hx58z025d8vsyk"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; rioja = derive2 { name="rioja"; version="0.9-15.1"; sha256="18fyqcykg12mf4ap0a2la30656xq32immqz11ddmrfrb0vpd2h7h"; depends=[mgcv vegan]; }; - ripa = derive2 { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; - riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.1.0"; sha256="00qx55s1ls3qcnba8mjbslz629gqgf9f600b5jvrdzwmrldvrjgd"; depends=[alabama nloptr quadprog Rcpp RcppEigen]; }; + riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.1.1"; sha256="0ndqvb0ap865x80h5x1dsd446dig5fp85dfdip5fxa0yi2y30r1v"; depends=[alabama nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; - riskRegression = derive2 { name="riskRegression"; version="2018.10.03"; sha256="1j0q0a9rkh9gmcidl6kwlmiiwn24cxg9yrx0i72py1b2765kqwk2"; depends=[abind cmprsk data_table doParallel foreach ggplot2 lava plotrix prodlim ranger Rcpp RcppArmadillo rms survival timereg]; }; + riskRegression = derive2 { name="riskRegression"; version="2019.01.29"; sha256="0nvp42j2bzqmiffni2yxg7170z1hl9xli614v6ji65nhy27gnr85"; depends=[abind cmprsk data_table doParallel foreach ggplot2 lava plotrix prodlim ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; + riskclustr = derive2 { name="riskclustr"; version="0.1.0"; sha256="016479l8q28mblapc7rhm16wr99fp4127h03yv62cxphiw90pvyg"; depends=[aod gtools knitr mlogit usethis]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; - riskyr = derive2 { name="riskyr"; version="0.1.0"; sha256="1s6yrij5d1vhvzc7nnajjnjmxnhrs0r1psppcvwb0qg3ff181y22"; depends=[diagram vcd]; }; + riskyr = derive2 { name="riskyr"; version="0.2.0"; sha256="0zq5qybqisbh9k7i57s8yw9xcm7yckcjk17h4ybcx4p8788gg5m3"; depends=[]; }; ritis = derive2 { name="ritis"; version="0.7.6"; sha256="1a1q44dmagzf4k67pxa5x0s5s5jx9kpqg4s193c8r3m7kk3xwna6"; depends=[crul data_table jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; }; riverdist = derive2 { name="riverdist"; version="0.15.0"; sha256="145mvqnhv12dcvss54wdycgb3wwk95phl4kx5z0jnh3kmm1zsdl4"; depends=[rgdal sp]; }; @@ -11371,8 +11404,8 @@ in with self; { rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="0.3.0.1"; sha256="0j7kp6h25wbkvpzr7dpc0zgdpjiwsjjlgprj3mv7bgfalfq1si99"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.2.9"; sha256="025hh6fv2kpgi7jvgmjdmh26smhpfaxisj1gq5jcc6xl02jxhpp0"; depends=[BH data_table Rcpp rgeos sf sp uuid]; }; + rlang = derive2 { name="rlang"; version="0.3.1"; sha256="0lbi66bavca866k26dnpkxj3l106xr4a6khcsfn8i3i8w8mpnhih"; depends=[]; }; + rlas = derive2 { name="rlas"; version="1.3.0"; sha256="15qd7adfzbf39qzfry8i5gxnafr9xa79hz1nhz6flhy4970gsqih"; depends=[BH data_table Rcpp rgeos sf sp uuid]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; }; @@ -11392,26 +11425,27 @@ in with self; { rmatio = derive2 { name="rmatio"; version="0.12.0"; sha256="1cw7j44rgjgbw2xln7lh29ln53lwfadr8rx0sffkjwc7lbh1r6wa"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.2.15"; sha256="0qz8b6z1rslsay0m94y013wychajq850bffv6kg2m0jlf4m16320"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.3.0"; sha256="1p05ln653yrd02wmn8wfzawiw6a924d8an0568fcbgl1pdna43b1"; depends=[psych RColorBrewer]; }; + rmd = derive2 { name="rmd"; version="0.1.4"; sha256="01ib000hq6acklvysdxnyjmlypnxznsk0zymj1f6vs9vwh711f00"; depends=[blogdown bookdown bookdownplus citr cli crayon curl devtools dplyr DT magrittr mindr miniUI pagedown purrr rappdirs rmarkdown rstudioapi rticles rvest shiny shinyjs tibble tinytex xaringan xml2]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; rmda = derive2 { name="rmda"; version="1.6"; sha256="1m7j79jwii9la47w34ka3yl1n7nql8pfn32if0aycn4yw5sy8dmc"; depends=[caret MASS pander reshape]; }; - rmdformats = derive2 { name="rmdformats"; version="0.3.3"; sha256="06nyrdhy26mvgfb1bnlbd8hslybpc01a30a40wwlc3ay7yp0nzrj"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; + rmdformats = derive2 { name="rmdformats"; version="0.3.4"; sha256="0sz404wc4yn9n947l6h0k7v7kxz96fkkpy8s8751f4lx10dx3ycc"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; }; rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; }; rmetalog = derive2 { name="rmetalog"; version="1.0.0"; sha256="1ndw8drzhf74sjx31zfhhx9q1l6pdn4yx2i8l7klp38d5bsc27xm"; depends=[ggplot2 lpSolve]; }; rmetasim = derive2 { name="rmetasim"; version="3.1.7"; sha256="0sz4mdprdi6sgkfwfdvh2hr9nxiwq17sw0vggq3cvs7lzb0i6m9r"; depends=[ade4 adegenet gtools pegas]; }; - rmgarch = derive2 { name="rmgarch"; version="1.3-5"; sha256="1c9rbd56ssa8msw8s181bn3sjyxchai8q63vchdw5g8kqi5v4l0z"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; + rmgarch = derive2 { name="rmgarch"; version="1.3-6"; sha256="0x1zc9i0hpzxsng2lg4k0jikj3jd705lh6229jmhrh1zk77jzskd"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; rmi = derive2 { name="rmi"; version="0.1.1"; sha256="1y0395l9lhskdrk3x9ps2dmv0sznsba0n6a9fmma33dc9dhywgf9"; depends=[BH Rcpp RcppArmadillo]; }; rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rmonad = derive2 { name="rmonad"; version="0.5.0"; sha256="0m7hhmn87rfh49hxrjlcxcq6q36niyxlh3w2frld68jkbks71jn5"; depends=[digest glue igraph magrittr pryr]; }; rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; - rms = derive2 { name="rms"; version="5.1-2"; sha256="01wjxlqfz6l1bdsvxqq0lsbps0k86hx3ayb6fl2n2hxccvsfxkzi"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; + rms = derive2 { name="rms"; version="5.1-3"; sha256="1sw9a0iqiips580jpbk7yiqgyiswihvaqbnq4ybsmd4ki86i5isz"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="0.0.0.2"; sha256="0by2d6l25lf5vidxbkcxghpxycffyldzzbxcw6h4rm86zmkkv1m0"; depends=[magrittr purrr readr tidyverse xts zoo]; }; rmumps = derive2 { name="rmumps"; version="5.1.2-5"; sha256="09jw5h122mpsx4idmzadhvsc4bx74fydxmxsx9fpsfsz9k9dqyhq"; depends=[Rcpp]; }; - rmutil = derive2 { name="rmutil"; version="1.1.1"; sha256="0yyzypkz6jjqvhafg6ipml8hrhr0w9l6j2vnmf0gdy90xj78mgag"; depends=[]; }; + rmutil = derive2 { name="rmutil"; version="1.1.2"; sha256="17cbsp0h3n47wr8zs5sw4f5zbwjbzlz52j7fz23kkg3nx5wchfdy"; depends=[]; }; rmweather = derive2 { name="rmweather"; version="0.1.3"; sha256="1qdf511vmpffrdfcxlll54km2s0pf6pdswj8401k4ymv5iif91hl"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; - rmytarget = derive2 { name="rmytarget"; version="2.1.0"; sha256="110ckzqpipm98a7ddxr2ar0dym2qp9ix957rjx0ana9dx99nyp94"; depends=[dplyr httr jsonlite lubridate stringr]; }; + rmytarget = derive2 { name="rmytarget"; version="2.1.1"; sha256="1c7ahhyiqdsshii2ia4nl1nvbxsbr3c2v2axwii8hnjifzaxr9a7"; depends=[dplyr httr jsonlite lubridate stringr]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; @@ -11423,7 +11457,7 @@ in with self; { rngtools = derive2 { name="rngtools"; version="1.3.1"; sha256="097215qcfw6ybllpzmp1532r59h2srvch3aca4z4s6l2rf9w8gvn"; depends=[digest pkgmaker stringr]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; rnn = derive2 { name="rnn"; version="0.8.1"; sha256="0g2c87x939x5gh1h6np0fbyrg5w2zk2ydw8r0yaq2zj3z5yc5mlc"; depends=[shiny sigmoid]; }; - rnoaa = derive2 { name="rnoaa"; version="0.8.0"; sha256="0w0a37gpy7smjcvc7qzx4s0n9l7f0yk99cwwg5y6xhx5270z30md"; depends=[crul dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr XML xml2]; }; + rnoaa = derive2 { name="rnoaa"; version="0.8.4"; sha256="1gyvsaz3whql4jzphrlawv3rrzyjp852kwzgq4wgdm8x25qyg6pv"; depends=[crul dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr XML xml2]; }; rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="1.5.0"; sha256="07c2fp0vl02mh31yzimq7hwkcrwrdl83jyi58302hn4anx0cyvjy"; depends=[ggmap ggplot2 httr plyr rgdal rjson sp stringr xml2 xts]; }; @@ -11451,7 +11485,7 @@ in with self; { robustbase = derive2 { name="robustbase"; version="0.93-3"; sha256="1nqh1qg1qd1qrxl1w585dqx7ql55qzjny1r4f9hqxpwd7lml07cc"; depends=[DEoptimR]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; - robustlmm = derive2 { name="robustlmm"; version="2.2-1"; sha256="0xh77jrhjybrbcfzvfzywj8nanqyfgn93rhd1bixw4snz7l1n97x"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="2.3"; sha256="1rfiz29wy20srwd24ja42fh51ng9vyqrkjbb2dzvsqf663hsf1q0"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; robustloggamma = derive2 { name="robustloggamma"; version="1.0-2"; sha256="1cifyasrik010zs8jsz0kzzmwm3qmc0y7h2dahg2ibpwxfcqfcpq"; depends=[numDeriv RobustAFT robustbase survival]; }; robustrank = derive2 { name="robustrank"; version="2018.10-1"; sha256="0fggn4kv56rvjb84lf18q140flcc6n90bqj59g5zpf8q9l7pqy9z"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-3"; sha256="0gcxxizsg380blrv55vl9f3az8gnr274c6idi0pimhh5c26h7ma6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; @@ -11467,7 +11501,7 @@ in with self; { rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rodeo = derive2 { name="rodeo"; version="0.7.4"; sha256="16yzj12m9wvcrqxc33rpbyzbq019swi5jxnbda9crfwjdvafaa0d"; depends=[deSolve R6]; }; rodham = derive2 { name="rodham"; version="0.1.1"; sha256="15mrlx7azvwkwjgfplvs5fhk2nwlg9pay2l99q327p8hx87jr8ra"; depends=[jsonlite plyr splitstackshape stringr tibble]; }; - roll = derive2 { name="roll"; version="1.1.1"; sha256="146x0sfalwxykrj0m08kmrjhihdfnss97hk6x76zd46ji305zk9v"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + roll = derive2 { name="roll"; version="1.1.2"; sha256="16s60r8p85q176k5smzcdcqzx9snf62v8q6r3ddvpp7mh5l9clgj"; depends=[Rcpp RcppArmadillo RcppParallel]; }; rollRegres = derive2 { name="rollRegres"; version="0.1.1"; sha256="1mbwx1rpb5sj6kzsagf3mg7kz11naqqn5fpvnpdvmv7mcp92wj7x"; depends=[checkmate Rcpp RcppArmadillo]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rollmatch = derive2 { name="rollmatch"; version="1.0.1"; sha256="1bxd31s30jji97m93z4w4hdxdrfyp947dyzhjwmm13zc59mpfnvs"; depends=[dplyr magrittr]; }; @@ -11481,7 +11515,7 @@ in with self; { rootWishart = derive2 { name="rootWishart"; version="0.4.1"; sha256="1l9pr3i20hi5k02qnlb3blxhlvp2j0njn74xslw3gcjvyzjlr12j"; depends=[BH Rcpp RcppEigen]; }; roots = derive2 { name="roots"; version="1.0"; sha256="1ssmmmrg18xmqxs6f7dqv07357iwcvk21j1gxsl8s9njbj2plxai"; depends=[animation igraph rARPACK]; }; rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; }; - ropenaq = derive2 { name="ropenaq"; version="0.2.6"; sha256="065p4c8l4bqxy00clbjhad8hqw4gg2h2c00b06n2fa5n70z0akgq"; depends=[crul dplyr jsonlite lazyeval lubridate tidyr]; }; + ropenaq = derive2 { name="ropenaq"; version="0.2.7"; sha256="161yc2d82iivxaqpl5kzvxcmcqjpv6s5jj9pa304vj8cz0rnxgfr"; depends=[crul dplyr jsonlite lazyeval lubridate tidyr]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; roperators = derive2 { name="roperators"; version="1.1.0"; sha256="0klmk1jmh1iysgf345qa6qyjmn1pkz072ha254k90flprgicg7c6"; depends=[]; }; ropercenter = derive2 { name="ropercenter"; version="0.2.0"; sha256="1ghn666jhwmkxwrr8pc398nhzvg4y4097pa19m4b08d9mkg9iqlj"; depends=[dplyr foreign haven httr readr rvest stringr tibble tidyr xml2]; }; @@ -11495,7 +11529,7 @@ in with self; { rosqp = derive2 { name="rosqp"; version="0.1.0"; sha256="0975g7p75bq238g7lr200svsqm9i11z7l331r0igm5ycahljrlsm"; depends=[Matrix R6 Rcpp]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.5"; sha256="1zksh6hyxdkm0lvvrld6dgkmhszn6wsjrjzr2xbn3af3gsvsydaa"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; }; - rotl = derive2 { name="rotl"; version="3.0.5"; sha256="18iq91r7g79nv6qmkb6kp5vlc3jkymfsdzs83il5rd63cvj6gp46"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; + rotl = derive2 { name="rotl"; version="3.0.6"; sha256="19cw4wh8sap1z194k7cpjfw6g40y3r4jga2w0apq09jwqhl6hwgj"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; roughrf = derive2 { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[mice nnet randomForest]; }; roundhouse = derive2 { name="roundhouse"; version="0.0.1"; sha256="142dw9ky6fyp5n8zf5lymx083gi56q6wxj4jm0m8cjb0khiqw2lq"; depends=[httr jsonlite]; }; routr = derive2 { name="routr"; version="0.3.0"; sha256="1mjf1vwrh1k1kjl1kcgqs29zb8h9m05630czsjkz7li3pmvy9mrv"; depends=[assertthat digest httpuv R6 reqres stringi uuid]; }; @@ -11515,7 +11549,6 @@ in with self; { rpdo = derive2 { name="rpdo"; version="0.2.5"; sha256="1504f1i4aldnasnkc596pfpyqcmpvk6p20k46s27j8ld5470w3hn"; depends=[checkr err]; }; rpf = derive2 { name="rpf"; version="0.59"; sha256="06gibjngl27mmvmni6ncz5qa4nlbxlna57f13607a9r739146378"; depends=[mvtnorm RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.6"; sha256="1vn5cswrkmw98z1dr0f0yjkz3n8kwvjb4zknqg81fzqsagfc89yx"; depends=[getPass RApiSerialize Rcpp uuid]; }; - rpgm = derive2 { name="rpgm"; version="1.1.2"; sha256="0pbja877gb3mn7m78lfdl217dm7qsrblq6gwrjh5wbv1nd532hvz"; depends=[]; }; rphast = derive2 { name="rphast"; version="1.6.9"; sha256="111m824z7z0lqdj4kk4cp1yfjhx7d5d9463k892dyvgjvkagvi9g"; depends=[]; }; rphylopic = derive2 { name="rphylopic"; version="0.2.0"; sha256="0wmdvdz75bbwhn3qk8ic5lj256ik27d7vxrq9hg8c9rqzygj8wh3"; depends=[crul ggplot2 gridBase jsonlite png]; }; rpicosat = derive2 { name="rpicosat"; version="1.0.1"; sha256="1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"; depends=[]; }; @@ -11524,14 +11557,13 @@ in with self; { rplos = derive2 { name="rplos"; version="0.8.4"; sha256="1hx1r9ag62a2mv8zqag0i1f10k5rfdygjhqinql4cgzgrdi7y3h7"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-7"; sha256="1bbciq84l0h6g4qajlcqg3v66g2rspflv6k7x5h5qzwlcb4p4dps"; depends=[xtable]; }; rpms = derive2 { name="rpms"; version="0.3.0"; sha256="0kdxjn2aij83ax0g1ipdb7qrvpqn67vhs3z54ihj1kbx4i8pzs9g"; depends=[Rcpp RcppArmadillo]; }; - rpn = derive2 { name="rpn"; version="1.0"; sha256="0wk8y4yk6wqzbq5bqv6zncfp9az5vn8xgwh426pk3bxm3v4xi16i"; depends=[BBmisc checkmate]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; }; rpostgis = derive2 { name="rpostgis"; version="1.4.2"; sha256="0zbq9605jk26r2mdkigi2pgn2s5ssrp5dvm4kbgk7fscnm1r6fbs"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpostgisLT = derive2 { name="rpostgisLT"; version="0.6.0"; sha256="1adwpkfndm6n3s9xcx8zrwnj6bmgvq4nzs072fnl5i6kjy6ngjm6"; depends=[adehabitatLT DBI htmltools leaflet lubridate magrittr mapview rpostgis RPostgreSQL sf shiny shinyWidgets sp]; }; rppo = derive2 { name="rppo"; version="1.0"; sha256="0agqys52l8bb3mc3bpawym12phl5r1ymalfvgrq5w6n78lpzcxls"; depends=[httr jsonlite plyr readr]; }; rpql = derive2 { name="rpql"; version="0.7"; sha256="18llgwk1jfwf3y1dabpc508kfb1k4yh4cr4k76azkziv11arbh0c"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; - rprev = derive2 { name="rprev"; version="1.0.0"; sha256="0v8ibflqbc45qss2jnnalqhq788cp6gpx1lylcwj2h9k4i8qgi4c"; depends=[data_table doParallel dplyr foreach ggplot2 lazyeval lubridate magrittr survival tidyr]; }; + rprev = derive2 { name="rprev"; version="1.0.1"; sha256="03dbfxan43hly1s79x63nzviz6m1076ld2gan6cpwgvlik6s2bac"; depends=[data_table dplyr ggplot2 lazyeval lubridate magrittr survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="1.3-2"; sha256="12r3fdxmi2pmwn6ic3rhg0b20ll5z420m0d8fziv1n21961namnz"; depends=[backports]; }; @@ -11542,9 +11574,9 @@ in with self; { rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; }; rqPen = derive2 { name="rqPen"; version="2.0"; sha256="13m21v753njaramgpbhn0lb793b6946crv5v8vl127w38q0z3wyd"; depends=[quantreg regpro]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.1.2"; sha256="12ai22q1qpk64zx9f6iw7l94bp390rglwpgiv6d5ssrwrbzy23p3"; depends=[data_table rquery wrapr]; }; - rquery = derive2 { name="rquery"; version="1.2.1"; sha256="1lshdmv8s9sqkv1wjyny5917c5shplbxfq3gl70qfggi8j5vq59m"; depends=[wrapr]; }; + rquery = derive2 { name="rquery"; version="1.3.0"; sha256="1y5az3fv54d323vrh0jyjnd8xv3wda97vpmlfipqawsrc65lsanq"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; - rr2 = derive2 { name="rr2"; version="1.0.0"; sha256="1cflysdx7n8mcb2whqi3wirg67aszbf2h8x23bpg7xx1im1xmgy4"; depends=[ape lme4 Matrix phylolm]; }; + rr2 = derive2 { name="rr2"; version="1.0.1"; sha256="07y0qs2x8gjvvp630vzqlsx9g0sz1qxvsayl6lqn91a7jkl08112"; depends=[ape lme4 Matrix nlme phylolm]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6"; sha256="1bw4pjj9hm9ik5bvvklnlkykhlqm6k7pbkma1iwc3kbg8shpbd18"; depends=[]; }; rrBlupMethod6 = derive2 { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhry46ff2ax48xcmnasygi5alv8d413g3qbk2da6i0d8l"; depends=[]; }; rrcov = derive2 { name="rrcov"; version="1.4-7"; sha256="14zjyqcdiqx6js99nx5s8hmyx564ixy2d8s6i7wa50xmx368rl6b"; depends=[cluster lattice mvtnorm pcaPP robustbase]; }; @@ -11567,11 +11599,11 @@ in with self; { rrtable = derive2 { name="rrtable"; version="0.1.0"; sha256="1rvqb32fr63dkm5kz291pxzli8yi10k76v0lm1qdn28cx1l6ff3y"; depends=[devEMF editData flextable ggplot2 magrittr moonBook officer purrr readr rmarkdown rvg shiny stringr ztable]; }; rsMove = derive2 { name="rsMove"; version="0.2.7"; sha256="0an5kknfap7hrg62gvdvrylx79p6fjdmbryhzlrj60i8n7cnc1c1"; depends=[caret ggplot2 lubridate plyr pryr raster Rcpp RCurl sp]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; - rsample = derive2 { name="rsample"; version="0.0.3"; sha256="1gdlx9irba0snyl5jv0gi6dwv5l044s2axjlnygh5narm2rhi4y1"; depends=[dplyr generics purrr rlang tibble tidyr]; }; + rsample = derive2 { name="rsample"; version="0.0.4"; sha256="0f10975j7gi4m6mq3i1g5j5khqi4ffr5aa8777mk9c9y55i1wrx8"; depends=[dplyr generics purrr rlang tibble tidyr]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; rscala = derive2 { name="rscala"; version="3.2.6"; sha256="0akwp6207dfv16arh99m7mfpwx0fjq01vlcs7spqn3bpk6qpjl4p"; depends=[]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; - rsconnect = derive2 { name="rsconnect"; version="0.8.12"; sha256="1zw7rvkg0vcajcyvx8nhxgp1c4882pwmdij4zv1by2fr3qw32678"; depends=[jsonlite openssl packrat RCurl rstudioapi yaml]; }; + rsconnect = derive2 { name="rsconnect"; version="0.8.13"; sha256="00bfkg8qndyicc2xin2mjk0g086gsi7vnnfxlc548fvd49ji885f"; depends=[jsonlite openssl packrat RCurl rstudioapi yaml]; }; rscopus = derive2 { name="rscopus"; version="0.6.3"; sha256="1fplb7wmzp78a1xi9b4bw6xis16gixhvl227yfhip650ib4srpv1"; depends=[dplyr httr plyr tidyr]; }; rscorecard = derive2 { name="rscorecard"; version="0.11.1"; sha256="0ic00g74iilg7ydndm40vvbl7z9r5fbfiayrzfvgpjhqrl1qx337"; depends=[dplyr httr jsonlite lazyeval magrittr tidyselect]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; @@ -11582,15 +11614,15 @@ in with self; { rsgcc = derive2 { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; }; rsggm = derive2 { name="rsggm"; version="0.3"; sha256="17yzvd5vs2avp0nzk7x9bi4d7p6n9nv7675qpgfpwkfqp25lax73"; depends=[glasso MASS Matrix QUIC]; }; rsimsum = derive2 { name="rsimsum"; version="0.3.3"; sha256="0h08klkdn84y32xlaafig1jj5ni79j4yx2pp3pg2qfmpimxcm44w"; depends=[checkmate ggplot2]; }; - rsinaica = derive2 { name="rsinaica"; version="0.6.0"; sha256="0ygr2mpvmqnv6a71cm93xss8g3pnmb5ax0fb88cjzax993m2l48v"; depends=[dplyr httr jsonlite lubridate stringr]; }; + rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; }; rslurm = derive2 { name="rslurm"; version="0.4.0"; sha256="1ck4ky5d0pf8hnxz1ijbjk0nfyj1hfnhf9la5qrqw2spa09z82ki"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10"; sha256="0a6bxrb0qad40lnigqjv2pnwwzcwi1rcmh9gb1a1b00k1n3mnmlc"; depends=[estimability]; }; rsnps = derive2 { name="rsnps"; version="0.3.0"; sha256="1ym58gqpvn708228pbkq1klvl60a60bwxwm0arzzad3wh1wansxj"; depends=[crul data_table jsonlite plyr stringr XML xml2]; }; - rsoi = derive2 { name="rsoi"; version="0.4.0"; sha256="0aa4iiq5kh9l7wplvsqlgj89rnbr6p4bnnfn10dgfpyrpf7rqvza"; depends=[]; }; + rsoi = derive2 { name="rsoi"; version="0.5.0"; sha256="0y7883b4zw95rhndxl66ji513a1m4riacbkbvd1bzkzq4jb3a8fc"; depends=[curl]; }; rsolr = derive2 { name="rsolr"; version="0.0.9"; sha256="1mxvzb7wvm1agv35r82pr1hxa3fimixcwf36j98qjlxj9p7valrw"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; rspa = derive2 { name="rspa"; version="0.2.3"; sha256="171bwyxbjx2w8fz87jsbaghqxgmmkaxixhia0kp2y33ns6fc1hy9"; depends=[lintools validate]; }; - rsparkling = derive2 { name="rsparkling"; version="0.2.14"; sha256="1d8mdmqppajl4l82jpw5jca9nsf0w4dv6gpw7jig1j7r6ynwc7cf"; depends=[h2o sparklyr]; }; + rsparkling = derive2 { name="rsparkling"; version="0.2.18"; sha256="0lhq9jxxib2krl298hy3sglh5lm5lyibknigpbxx68pn71jwp1hm"; depends=[h2o sparklyr]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.3"; sha256="06lafgdbxaq3rifbz6mhvp5b3dm3vxz3dkzdmiz218xhvn4mdfry"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsq = derive2 { name="rsq"; version="1.1"; sha256="0pvnyf875jybid16mg1y3dmnlrk1vahckhr5zaai1a0k4i6mh4jf"; depends=[MASS]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; @@ -11598,11 +11630,12 @@ in with self; { rstan = derive2 { name="rstan"; version="2.18.2"; sha256="1zvh5qlxkwi947nqmlhazr7jwii68fpxnkcsr38s3m8havcxlxad"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen StanHeaders]; }; rstanarm = derive2 { name="rstanarm"; version="2.18.2"; sha256="0jflfj7g1rx0zhq0kbi1b1zwad1m7lhbvymz43g5c9cx3hh4gi68"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders survival]; }; rstantools = derive2 { name="rstantools"; version="1.5.1"; sha256="11dlrz3mj1j9qigh2qff0ixdcfds4ppxd37112yq8bn16b0idasw"; depends=[]; }; + rstap = derive2 { name="rstap"; version="1.0.3"; sha256="176z39k54l5r60md6wziz828c46alv2pmqivvmhvb358crrb8x7n"; depends=[abind bayesplot BH dplyr ggplot2 lme4 loo Matrix nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="0.20"; sha256="1wrl7rc4nrnxjs26l9v36x3mpx33mjijk27nbzidwrhp9gppzz1i"; depends=[]; }; - rstpm2 = derive2 { name="rstpm2"; version="1.4.4"; sha256="0q7pnhbxysh9kbnns6xdg2kcs4jwz9bw442935vxddqaib1jnddm"; depends=[bbmle fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; + rstpm2 = derive2 { name="rstpm2"; version="1.4.5"; sha256="0xdvv27cf3b45ahvlzbn8n0kmj4kyc7sl52xjr71757ymf154q3g"; depends=[bbmle fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.5"; sha256="1wprsnwl63cc4a6j5h18r09wlh32bq5z6hj6r5klp7rkpjchsplp"; depends=[]; }; - rstudioapi = derive2 { name="rstudioapi"; version="0.8"; sha256="0d6r0in13k0rcyr6asanwy0a9dv4lizq6l2w913rr222pq6vrrck"; depends=[]; }; + rstudioapi = derive2 { name="rstudioapi"; version="0.9.0"; sha256="0gn1pvaxfh2gh2ikvxcr8f6k97ygcfr68iz6dhwlq4z71a1s4jai"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; rsunlight = derive2 { name="rsunlight"; version="0.7.0"; sha256="0v2wrgq8fxvkf8sf4z4wi4bbvbskw5wzcplns9imwfmm3y2pabyi"; depends=[crul data_table jsonlite plyr stringr tibble]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; @@ -11615,7 +11648,7 @@ in with self; { rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; rtdists = derive2 { name="rtdists"; version="0.9-0"; sha256="14ccpn67xdsx5fhwiw32z55gldzdcpaparqb1zpls2r233wg0v99"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; - rtext = derive2 { name="rtext"; version="0.1.20"; sha256="0455rwfxmpgb4qb925ildqr4km4ndgqjxgvk90x2dhfivgmmn60k"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; + rtext = derive2 { name="rtext"; version="0.1.21"; sha256="0j2jfz0mz9552dwa78d527lxipmj5ql8q8np8qq5jw4ka6wj5lbs"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-13"; sha256="1gwvw98lnym305z9awjaximrmkl4kkki59blbwqs2js42iqcx2m3"; depends=[R_methodsS3 R_oo]; }; rtfbs = derive2 { name="rtfbs"; version="0.3.9"; sha256="02irj6c7nfgp42yb5zdmhbr5pi09xgx0z76d1ccfczjf0r1cyvfz"; depends=[rphast]; }; rticles = derive2 { name="rticles"; version="0.6"; sha256="1rdjk5h9li55j3r7pj7q82z2y4phxqwybr3375dyajymd370gsys"; depends=[knitr rmarkdown tinytex xfun yaml]; }; @@ -11628,20 +11661,21 @@ in with self; { rtk = derive2 { name="rtk"; version="0.2.5.7"; sha256="0h2664z7rbpj0zqnixb5swkkpjbbsgiagmd6dl92k10zphw0c8i0"; depends=[Rcpp]; }; rtkore = derive2 { name="rtkore"; version="1.5.5"; sha256="0srk0ih4gbmhb1pl6zf8sjwrkdmgws9cl1397fcqv6l3bc376622"; depends=[inline Rcpp]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; - rtrek = derive2 { name="rtrek"; version="0.1.0"; sha256="05dzqylvv8rgh0sxl2qa2zvxnmilwmxsa6f99mh6ygcf9pal8jzd"; depends=[dplyr jsonlite magrittr purrr]; }; + rtrek = derive2 { name="rtrek"; version="0.2.0"; sha256="0xp97vzbd5lmad7zd1n14y3x6l7kdqrl9kzj5ncmikwxa5iavcn2"; depends=[downloader dplyr ggplot2 jpeg jsonlite magrittr memoise purrr rvest tibble tidyr xml2]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; rtrim = derive2 { name="rtrim"; version="2.0.6"; sha256="18fvi8zbf9dqwi5x0sgy2aay5565ldvqpispqqb5gx2lwb9qra2r"; depends=[]; }; - rts = derive2 { name="rts"; version="1.0-47"; sha256="0xlwg6c49clb1zyfw8s8qhwdbyl0rwx7ljy8j2rq7hjh07541hdx"; depends=[raster RCurl sp xts zoo]; }; + rts = derive2 { name="rts"; version="1.0-49"; sha256="086zlmcjsv7a38k1jfzq2vhlmx7nivhffcz83i57hl6wbkjl7gv2"; depends=[raster RCurl sp xts zoo]; }; rtsdata = derive2 { name="rtsdata"; version="0.1.1"; sha256="1xh5wsc330x49zcid8hpv9jarbp64dgq10k6lbjjsx1n7dg9qm3z"; depends=[alfred anytime curl data_table mongolite Quandl quantmod xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; rtsplot = derive2 { name="rtsplot"; version="0.1.1"; sha256="0dkv8pl2937zfpcwyy9ms1ak29nv9mxyb8w6bh2ns8figjp11zmp"; depends=[quantmod RColorBrewer xts zoo]; }; rtweet = derive2 { name="rtweet"; version="0.6.8"; sha256="0r2lyiy3wa7v7wq72fvckw3bbff9sjy5bqpag766pl1rwfsbphjm"; depends=[httr jsonlite magrittr tibble]; }; rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; rtypeform = derive2 { name="rtypeform"; version="2.0.0"; sha256="00as49l9plncc25bn93x36hpxnxachsh382ivhq6k9d9gi8424c0"; depends=[dplyr glue httr jsonlite lubridate purrr tibble tidyr]; }; - rubias = derive2 { name="rubias"; version="0.1.0"; sha256="0k8f1aaj3zpxqkhzjfl7iyyx7pjssp5lldajjsghw110j75qksh4"; depends=[dplyr ggplot2 gtools magrittr Rcpp readr rlang stringr tibble tidyr]; }; + rubias = derive2 { name="rubias"; version="0.2.0"; sha256="1dvg2b62l7bk8la762yyikx7516h8zhymhsn3hs3p435m1hdn95l"; depends=[dplyr ggplot2 gtools magrittr Rcpp readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.3"; sha256="0wbh9zbgqf5bk1ix5qry18lhgdqk90pn5xnv401268gldjy4z777"; depends=[Rcpp]; }; - rugarch = derive2 { name="rugarch"; version="1.4-0"; sha256="0b0rq88v93945g7pr6xin7wfdm8zl2vw8hxwa2kfak4xnrrprsyy"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; + rugarch = derive2 { name="rugarch"; version="1.4-1"; sha256="05dlzrv9ahfwqq5bmd9vk13zvzwgf1zyq65kp3qf94v9sp5xr5kx"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; + ruimtehol = derive2 { name="ruimtehol"; version="0.1.2"; sha256="0fh8yf45f7xd1kq5djqsghqym6222vp385chqykgg009vqg80zkk"; depends=[BH Rcpp]; }; ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; }; ruler = derive2 { name="ruler"; version="0.1.4"; sha256="0fxwadx217h8nhry3mvwqk1pvi7f6ns19kcidixdk2b4zb5pqsc7"; depends=[dplyr keyholder rlang tibble tidyr]; }; runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; }; @@ -11652,6 +11686,7 @@ in with self; { rust = derive2 { name="rust"; version="1.3.5"; sha256="16jrf1nfn3wnkrbzp5bjkqi0q0vpy82ra6f0vs1pyk5hw5jhshg9"; depends=[Rcpp RcppArmadillo spatstat]; }; ruta = derive2 { name="ruta"; version="1.0.2"; sha256="18r6vcjlxarwdc2gi1d1r5lq763nnvsy7ccq77lbl3cswx5s7x1q"; depends=[keras purrr]; }; ruv = derive2 { name="ruv"; version="0.9.7"; sha256="1ynxmax9sz74s8abmmizla6jas385mn5ij151mq35k0yv1xszzj5"; depends=[ggplot2 gridExtra scales]; }; + rv = derive2 { name="rv"; version="2.3.3"; sha256="1h5lhy87v88b70a7pbq5xirskm6ih9fk90n6mzp1nmkr7w1d3zai"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.6.3"; sha256="1bsdvwcijb75f27c8padjx8663as667axc4skwa6xgv5y423kbd0"; depends=[]; }; @@ -11675,10 +11710,10 @@ in with self; { rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; rxylib = derive2 { name="rxylib"; version="0.2.1"; sha256="0qfdd7z9as6igc82i8dbvjz03jk8scxz599jw8xm69y5qs5zf104"; depends=[BH Rcpp]; }; - rym = derive2 { name="rym"; version="0.4.0"; sha256="1vxc6nk0d90ggwymdyfwaxzsd91zmd3bspz0chj7iaki8cjbbjdw"; depends=[httr stringr]; }; + rym = derive2 { name="rym"; version="0.5.2"; sha256="1j69fmc0wgj8w5y68ix13kh3rsc4blmyc9hsmp41crgr10mi3nvi"; depends=[httr stringr]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; - rzeit2 = derive2 { name="rzeit2"; version="0.2.0"; sha256="0r74i14bnpw1dp8vzcx8kf87a8v4g3r4wbs4c87s9s4ingvsbl64"; depends=[anytime httr jsonlite openssl rvest stringr xml2]; }; + rzeit2 = derive2 { name="rzeit2"; version="0.2.3"; sha256="0fvkpc6l57s64m0zx8fzazvyhpn5wxa1cb185h20x8hjf069i5lf"; depends=[anytime httr jsonlite openssl rvest stringr xml2]; }; rzmq = derive2 { name="rzmq"; version="0.9.4"; sha256="1bbkgxqpjmy3ma76cc9kjxhhwi632di4mfarlgxi2g42dmsxmyq3"; depends=[]; }; s2 = derive2 { name="s2"; version="0.4-0"; sha256="1mpivllq3r3kn7msb7qn9h8fr31jl5cvfg1pdq1wi69k4bznd8y0"; depends=[Rcpp]; }; s20x = derive2 { name="s20x"; version="3.1-27"; sha256="021f9l34svx42mnzi080rr44sxz9zjvcnxljakcag02r4hl52pcp"; depends=[]; }; @@ -11688,7 +11723,6 @@ in with self; { sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; }; sBIC = derive2 { name="sBIC"; version="0.2.0"; sha256="1fx17c9w7v6wi02i293vjdahwxx4b5a118r655cl12gsd5qwqj11"; depends=[combinat flexmix hash igraph mclust poLCA R_methodsS3 R_oo Rcpp]; }; sEparaTe = derive2 { name="sEparaTe"; version="0.2.1"; sha256="0k1c0wa052f1fprc9jn0i3g2cawxfhkan998jlhkr4iy986jynw9"; depends=[]; }; - sExtinct = derive2 { name="sExtinct"; version="1.1"; sha256="1l6232z6c4z3cfl1da94wa6hlv9hj5mcb85fj1y0yparkvvl8249"; depends=[lattice]; }; sFFLHD = derive2 { name="sFFLHD"; version="0.1.2"; sha256="014gy3nj6gr740z4apw82jh4n7s57zmnr95bm3g9xxnwnb224npq"; depends=[conf_design DoE_base R6]; }; sGMRFmix = derive2 { name="sGMRFmix"; version="0.3.0"; sha256="183i3159k2cxpanm09zcy2y1vvjd6185gjjf81c3284prw3aky2c"; depends=[ggplot2 glasso mvtnorm tidyr zoo]; }; sNPLS = derive2 { name="sNPLS"; version="0.3.31"; sha256="0ja2f4n000r7cvf0jj2qypa5mfkikig47hfpqwh4611sl70qgx2y"; depends=[car ggplot2 ks MASS Matrix pbapply plotrix rgl]; }; @@ -11710,13 +11744,14 @@ in with self; { saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; + safetyGraphics = derive2 { name="safetyGraphics"; version="0.7.3"; sha256="0kpa7aiaxcaldzjkh4rhr1jh4krfgnl6m01qp2qkz8brcavwz8fl"; depends=[dplyr DT htmlwidgets jsonlite magrittr purrr rlang rmarkdown shiny shinyjs stringr]; }; salesforcer = derive2 { name="salesforcer"; version="0.1.2"; sha256="02a4xzwphy5zfkd0qza6cm2n7dpf71bmc6r78gj17w4amrp3k5y5"; depends=[dplyr httr jsonlite lubridate purrr readr XML xml2]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samon = derive2 { name="samon"; version="4.0.0"; sha256="0pvv93ahh0i69ncc3sic9481wd5rv5dfxysxyzkl61ds3yvrr09v"; depends=[]; }; sampSurf = derive2 { name="sampSurf"; version="0.7-4"; sha256="0azs8d1d4cp5vzrlzpn2lbqmbha6rxq109apg6hr2hf7i81g19d7"; depends=[boot lattice latticeExtra raster rasterVis sp]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-0"; sha256="1s3p5fvvxkjkm6vjpxi3rw8ncbmyvqpfb0gghcvf2sspdyzam1s2"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; - sampler = derive2 { name="sampler"; version="0.2.2"; sha256="02dk16hywmdrhaqf18dis7canq433wm7pn0haq10h49qav16kj55"; depends=[dplyr purrr reshape tidyr]; }; + sampler = derive2 { name="sampler"; version="0.2.3"; sha256="0kp11b252d20kjcb9w92057mm4kzp9z6zcz44vcc5wsjmrg1nc09"; depends=[dplyr purrr reshape tidyr]; }; samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.6.1.0"; sha256="0qkzhqr67x5rkahbyr5j2nksf0l0jwxsdl19p5gfx7j5kqzlifwq"; depends=[TeachingSampling timeDate]; }; samplesizeCMH = derive2 { name="samplesizeCMH"; version="0.0.0"; sha256="0gdywqmylid4fkz5syzf1wgcan71whhm9gjylmsg4p05hlwvpv1d"; depends=[]; }; @@ -11735,7 +11770,7 @@ in with self; { santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; sapa = derive2 { name="sapa"; version="2.0-2"; sha256="056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"; depends=[ifultools splus2R]; }; sarima = derive2 { name="sarima"; version="0.7.6"; sha256="1x0qxvq2sax8c2x3max4ghhdrxcyji92vdz4bg5jkpakrn4ilm8a"; depends=[FitAR FitARMA Formula KFAS lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; - sars = derive2 { name="sars"; version="1.0.0"; sha256="055h2sldx0yiqipk5rpxpskh7hz2d5qjvylv72rwq7s76jbnyqnn"; depends=[cli crayon dplyr nortest numDeriv]; }; + sars = derive2 { name="sars"; version="1.1.0"; sha256="14wx8q9058brj49d89ccl7ikwm08lqwnmmq5hkabw5cqqkjj3ccj"; depends=[cli crayon dplyr nortest numDeriv]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; satellite = derive2 { name="satellite"; version="1.0.1"; sha256="1g8zzlsdvb56l2jph7i5wjgbpyx5dkwa3nv8mzmg0qyh3zd9pyi0"; depends=[plyr raster Rcpp]; }; @@ -11762,7 +11797,7 @@ in with self; { scaleboot = derive2 { name="scaleboot"; version="0.3-4"; sha256="16shdj4b8pbdbphqzw7r5xzx6k2qfkr729inv21gkp9qcp4h0vrm"; depends=[mvtnorm pvclust]; }; scales = derive2 { name="scales"; version="1.0.0"; sha256="0353dkh3d7x78463c6ds80hcml59lrqwr8rlv82a8dnkxla4l7qc"; depends=[labeling munsell R6 RColorBrewer Rcpp viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.1"; sha256="18mapg96xl9a1g85h5xhqsz1333hkc28z0ivfjaff933p1kc6sng"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; }; - scalreg = derive2 { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; }; + scalreg = derive2 { name="scalreg"; version="1.0.1"; sha256="0kfcgl9cpp6g1qx23s1yrjzn0hi74vmrw567vy9wpsmhk04a5bkx"; depends=[lars]; }; scam = derive2 { name="scam"; version="1.2-3"; sha256="0ray17cbfd25x61kvpbg1kplpgz1dak4kp3p6lalffgjh94qry27"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.0.1"; sha256="147fhq34vqkq50bw0g3a112048s5jaxxcwm3iv5wykp8zl45msmz"; depends=[dplyr emdbook ismev magrittr plyr purrr Rcpp RcppArmadillo reliaR sets tibble tidyr]; }; @@ -11792,7 +11827,7 @@ in with self; { scoper = derive2 { name="scoper"; version="0.1.0"; sha256="1a170x1h2wglsmqp0fjga2q29yfnfdbgjcm62412n575j9d4xp5n"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval shazam stringi]; }; scopr = derive2 { name="scopr"; version="0.3.2"; sha256="0wssxfhkgpqzw5gbqbidawj7wizwcbra8inrxvnmsjxq0fhhzazy"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.1.9"; sha256="1786j57kg6v8yl88p5zhyi3g7vp5j4j8bci7bill134x9z63nacq"; depends=[data_table doParallel foreach ggplot2 gridExtra]; }; + scorecard = derive2 { name="scorecard"; version="0.2.2"; sha256="1ma9kjaf425hfq1qv29fsc2qn5f82ffwbljvp2kx606m9fn7a8wb"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.0.9"; sha256="1hnz9dgx5fxbhh54psalrr50n22vc250v2xxxl49j09q26xh37kl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; @@ -11805,7 +11840,9 @@ in with self; { scriptName = derive2 { name="scriptName"; version="1.0.0"; sha256="0jpr9x5hf45cik5zxqw0j3vkvbk04a7ck2crvb2472hrv7s9al55"; depends=[purrr rlang]; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; }; scriptexec = derive2 { name="scriptexec"; version="0.3.0"; sha256="11pd74y601ylxjy17267zlh1j2diac665k4qy0ly69iv77wl9cfy"; depends=[]; }; + scriptuRs = derive2 { name="scriptuRs"; version="0.1.0"; sha256="1wbvfqcc0raazhdc6pyp93q859ilxfz9rz338p3sb7fjyxvparbl"; depends=[]; }; scrm = derive2 { name="scrm"; version="1.7.3-1"; sha256="090gsa23l9s4x92q4n7ggp491fc8ghgnjw5p7j67gd1i1iwr55n8"; depends=[Rcpp]; }; + scrobbler = derive2 { name="scrobbler"; version="0.1.0"; sha256="166ria9pw1v8ky4975xb0jhqrl9jr3y95p7jl8bsmsgyii6lxcia"; depends=[anytime]; }; scrubr = derive2 { name="scrubr"; version="0.1.1"; sha256="0dqsk6vvc79qmjcr1gdksqzbd064nkyqfj2mxg6z7aifqgxs8zzz"; depends=[lazyeval magrittr Matrix qlcMatrix]; }; scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; }; sctransform = derive2 { name="sctransform"; version="0.1.0"; sha256="0cz5ssb55s7bmssx4y9dllm75f1qapldkxparvqv0sm39rwv7j7y"; depends=[MASS Matrix]; }; @@ -11815,7 +11852,7 @@ in with self; { sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.3.0"; sha256="0n2pbwm344iw3zm0nf6ybx51hf79jhjzd2780c57n71jl2ybxzpk"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS VIM xtable]; }; - sdcTable = derive2 { name="sdcTable"; version="0.25"; sha256="01d64lsd8hjyl16ycy06v5ij7yxl6k09gx2lrdpq0cy4sqxmfkgb"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; }; + sdcTable = derive2 { name="sdcTable"; version="0.26"; sha256="1qdjv4gnm74ypm23bsg1j6s2nb43mda5ywizjlr8sacwk2w0w5ym"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; @@ -11826,13 +11863,11 @@ in with self; { sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; }; sdols = derive2 { name="sdols"; version="1.7"; sha256="18c9y80pvhcqfl5ppfsfdhiygzx073xrzm1zzj08wn4r6snw04sh"; depends=[commonsMath rscala]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; }; - sdpt3r = derive2 { name="sdpt3r"; version="0.2"; sha256="0q97gxmf2vka566dm6jry5q2scqnm88fq0v5kqkphihsi52kya23"; depends=[Matrix]; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive2 { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; }; seaaroundus = derive2 { name="seaaroundus"; version="1.2.0"; sha256="09nyypzylb0y04ssd9ak2cw8wpy6a3nmabg9p7jrc8qz54wl6z4q"; depends=[crul ggplot2 jsonlite maps rgdal scales sp wicket]; }; - seacarb = derive2 { name="seacarb"; version="3.2.10"; sha256="0l3df69744bsibml6lq3a8cbx846095vgv0icnmrp6rz07x74g7p"; depends=[gsw oce]; }; + seacarb = derive2 { name="seacarb"; version="3.2.11"; sha256="0ad9v8p9xfyv2z2ix8zv98w5pqjbdrrknw68ndc3i817r7pygcz6"; depends=[gsw oce]; }; sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; - sealr = derive2 { name="sealr"; version="0.1.1"; sha256="1y31k4y3v1mvjagsbr4647hdn8rk4nfdyixidl3myq0qhnaf0x6w"; depends=[clipr clisymbols digest dplyr glue magrittr purrr rlang rstudioapi styler tibble tidyr]; }; searchConsoleR = derive2 { name="searchConsoleR"; version="0.3.0"; sha256="1z8bdlxq2sk8bcg164wy0yrmsx0inf0aj5ya2pybvadss8wr0qlr"; depends=[googleAuthR stringr]; }; searchable = derive2 { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; searcher = derive2 { name="searcher"; version="0.0.3"; sha256="004k757hn5y80k7kim3049n3mjrsimqpzdz5fis2ggxbdwwf1bs1"; depends=[]; }; @@ -11841,10 +11876,11 @@ in with self; { seasonal = derive2 { name="seasonal"; version="1.7.0"; sha256="1mna8w1haj5h2rhiw7jkhprr6cc9qr0n8x73d10v0l732kx41n31"; depends=[x13binary]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; - secr = derive2 { name="secr"; version="3.1.8"; sha256="02m7iac6z41w49lxnbfpfw20h272wnmg16ys3lpi1d0rli5xghg4"; depends=[abind MASS mgcv nlme raster sp stringr]; }; - secrdesign = derive2 { name="secrdesign"; version="2.5.5"; sha256="1fkz6l8wl2mq7daqyfq3xbghnp0qrqzx1ps7jhkg83nill4yakvb"; depends=[abind openCR secr]; }; + secr = derive2 { name="secr"; version="3.2.0"; sha256="1lc05wqhk4cwlmpcly6iiwqn231dzrhrspmz5gv8vdhn6mj7xc8c"; depends=[abind MASS mgcv nlme raster sp stringr]; }; + secrdesign = derive2 { name="secrdesign"; version="2.5.7"; sha256="064c9vwcn0pn0hd461j60fzzc21k22gqlm5zcsz2qqvv5c64ynic"; depends=[abind openCR secr]; }; secret = derive2 { name="secret"; version="1.0.0"; sha256="09b28f7ndc167bbanbdydralykq718fixnrgs5xr9d3fbdhz1vdl"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.1"; sha256="0jcvraypkss1gphh4cjb0b4v9460fj4dw80yd057ah11p9942ggs"; depends=[igraph maptools MASS rgdal secr sp]; }; + secsse = derive2 { name="secsse"; version="1.0.0"; sha256="1d5kwp8mbz9476dm1fmfdxxgf3cqzaqag0qkmnd4615c7cgjqy76"; depends=[ape apTreeshape DDD deSolve doParallel foreach geiger phylobase]; }; secure = derive2 { name="secure"; version="0.5"; sha256="16pv5m7rrcs8hcjj3kylq7smyzf2qk8rkg9m1b421w0ac7lg04x1"; depends=[MASS Rcpp RcppArmadillo]; }; securitytxt = derive2 { name="securitytxt"; version="0.1.0"; sha256="117xmhclv219ci8vki8ni8yqvlnwgj0pd8n0r752wd8333y130wr"; depends=[Rcpp]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; @@ -11852,11 +11888,12 @@ in with self; { seedy = derive2 { name="seedy"; version="1.3"; sha256="1a21sl8i7z12cjaqj08lkq3viazxlgxv82vaarm58fgbpsvdi0m0"; depends=[]; }; seewave = derive2 { name="seewave"; version="2.1.0"; sha256="0i0zhvgl64fwpabnwvfdxndmw5whhh2fd4lhpg399w4rzrwzv92y"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-5"; sha256="0q1k3zh29pkxx2sq28dw1vn4nmdv7pa8pw48vmywfcm4vmqnx7xg"; depends=[sp splancs]; }; - segMGarch = derive2 { name="segMGarch"; version="1.0"; sha256="19bfqk7wpzwvkbajn96l92rgaa2af05rz42xgbjgq9sfc64hx3p7"; depends=[corpcor doParallel fGarch foreach iterators mvtnorm Rcpp RcppArmadillo]; }; + segMGarch = derive2 { name="segMGarch"; version="1.2"; sha256="0chw41h25jka9wa3rf3d8dq2ym47379jflv33q6qxaak8xy1kmd9"; depends=[corpcor doParallel fGarch foreach iterators mvtnorm Rcpp RcppArmadillo]; }; segclust2d = derive2 { name="segclust2d"; version="0.1.0"; sha256="0kymw36cvakx84c96npkbnsvv0a1s82773ib5c802ybvkb2r1k9p"; depends=[dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 scales zoo]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmented = derive2 { name="segmented"; version="0.5-3.0"; sha256="0nrik5fyq59hwiwjcpbi4p5yfavgfjq6wyrynhkrbm4k6v1g1wlq"; depends=[]; }; - segregation = derive2 { name="segregation"; version="0.1.0"; sha256="17dhgk56j6zxqgfq08vig68lkhxhbgbbqhshqh5051m1k4ivjdyz"; depends=[data_table]; }; + segmentr = derive2 { name="segmentr"; version="0.1.1"; sha256="0lil0fgbg8ah99frap2hnkmn3dsg93lylppz81rs5ggbg654sfh4"; depends=[foreach glue Rcpp]; }; + segregation = derive2 { name="segregation"; version="0.2.0"; sha256="0ly4r93f6abkbz0g8wi9l21c9zh3pdxwbc3idkvkjkpk6aavijic"; depends=[data_table]; }; seismic = derive2 { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; seismicRoll = derive2 { name="seismicRoll"; version="1.1.3"; sha256="1868g8mlmhhlc6d6p86xlp6qhfbbrhba02dmx1zcvydsbqdvnpjj"; depends=[Rcpp]; }; sejmRP = derive2 { name="sejmRP"; version="1.3.4"; sha256="1j3sadbp12fip3n96s0hx1sg4kzwx8z01p1c905kv8gffhkz9bh0"; depends=[cluster DBI dplyr factoextra RPostgreSQL rvest stringi tidyr XML xml2]; }; @@ -11870,7 +11907,6 @@ in with self; { selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; sem = derive2 { name="sem"; version="3.1-9"; sha256="1f9c6g6pfx66gd2pappcsqh484ah6a0x4z47hpd46rah0817hcsa"; depends=[boot MASS matrixcalc mi]; }; - semGOF = derive2 { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[MASS matrixcalc sem]; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.1"; sha256="0fzz580an7mmq6vycxbcvfdqbii0qz0nghlidb6in05j8dppsnsn"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem semTools XML]; }; semPower = derive2 { name="semPower"; version="1.0.0"; sha256="0wciz5qrd40q4mxq96pibnya11ac42n37c9xhjd4zfhznhjz06bb"; depends=[]; }; @@ -11906,13 +11942,12 @@ in with self; { seplyr = derive2 { name="seplyr"; version="0.8.3"; sha256="1v4rr7v1hsrn15r4cbqd6ym9j9aiwnkmcix585fj3d4vfy1jklh5"; depends=[dplyr rlang tidyr wrapr]; }; seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; - seqHMM = derive2 { name="seqHMM"; version="1.0.9"; sha256="1rkcdj73h5jvqrjc24wjbig99il6ppkjy82255avbn1bdrrnrins"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; + seqHMM = derive2 { name="seqHMM"; version="1.0.10"; sha256="07nykzjp1pjaf5a1bas0id803hbs5bw6v5cipwmqc7mfjignpxdc"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; seqinr = derive2 { name="seqinr"; version="3.4-5"; sha256="17zv0n5cji17izwmwg0jcbxbjl3w5rls91w15svcnlpxjms38ahn"; depends=[ade4 segmented]; }; - seqminer = derive2 { name="seqminer"; version="6.7"; sha256="0cyzyfp0x39fg83g74jqyakd1qni3qkcvrzmjhrglgx8hgqd06nd"; depends=[]; }; - seqmon = derive2 { name="seqmon"; version="2.2"; sha256="0l17s3f6p228iz9q257ix0lqzrw5wnlqkcb8p4vn24kz7rvfcjz3"; depends=[]; }; + seqminer = derive2 { name="seqminer"; version="7.1"; sha256="1jydcpkw4rwfp983j83kipvsvr10as9pb49zzn3c2v09k1gh3ymy"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="2.1.2"; sha256="0f3aj96qvbr1wqimlv6rxg0v34zlrgc6pbdy7sfkwfzs1n44q1xf"; depends=[copynumber squash]; }; @@ -11953,26 +11988,27 @@ in with self; { sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; - shades = derive2 { name="shades"; version="1.3.0"; sha256="0qbg7b37ifgil7ka4vhk15wjf65rwha233yppqd9wlf3gys8784n"; depends=[]; }; - shadow = derive2 { name="shadow"; version="0.5.9"; sha256="00wakldv4nlw2vnydzgmf7kapi5k0qr4vzk5cyp4kk6q2m7p1dzg"; depends=[plyr raster rgeos sp]; }; + shades = derive2 { name="shades"; version="1.3.1"; sha256="0v0xp9l1zyq4iysmkrbdwk4r1rksjj8p5c1726yrcgyg55mj59nv"; depends=[]; }; + shadow = derive2 { name="shadow"; version="0.6.0"; sha256="0md9pjkl7yf7sh0aj8fsbzdh9f64wck2ariz279pvifqsj0bq1kh"; depends=[plyr raster rgeos sp]; }; shadowtext = derive2 { name="shadowtext"; version="0.0.4"; sha256="0fs2sa0y0wamv0c3zw8mka0yczlnlhagmbi8wn26fd31yqqgrh6s"; depends=[ggplot2]; }; shallot = derive2 { name="shallot"; version="0.4.5"; sha256="0r1zxpqqdfck7a9f868f9knr1ccnv8kf006milafjci57pvim1fg"; depends=[commonsMath rscala sdols]; }; shape = derive2 { name="shape"; version="1.4.4"; sha256="0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"; depends=[]; }; shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.4"; sha256="1zqykhx8rz1k2ahi2lmmzll1c8k0as6vw4gbd3rpfb5fvpni3ni0"; depends=[MASS minpack_lm rgl scatterplot3d]; }; + shar = derive2 { name="shar"; version="0.2"; sha256="14dh73q1208r51j8gn5n35hawmphz8fahdwnjry47npixqvjaj43"; depends=[classInt raster spatstat]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; - shazam = derive2 { name="shazam"; version="0.1.10"; sha256="1rhd2jh8s548z4p984l0cqn0hgdvnv4mgfbb82k5l4m9p2rsii81"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; }; + shazam = derive2 { name="shazam"; version="0.1.11"; sha256="0j6b7cbfvqz0xdcbyfx0abfklnv7yvjaalx2l3863m81qn877d65"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; shiftR = derive2 { name="shiftR"; version="1.4"; sha256="12mb4b5zhiq7hfkpc9hgi004hqli1kkkzdy2169svwrjv7bfifrn"; depends=[]; }; shiny = derive2 { name="shiny"; version="1.2.0"; sha256="1wb68vjzclblq5fnhyfxr7n585za3dy4wnxryva0k43fxgyq9kpy"; depends=[crayon digest htmltools httpuv jsonlite later mime promises R6 rlang sourcetools xtable]; }; shiny_i18n = derive2 { name="shiny.i18n"; version="0.1.0"; sha256="15llwr4yrx6rlk32b92wcq3dn360y5cvy4mh2aqkza9ikcvlhcvv"; depends=[jsonlite yaml]; }; shiny_router = derive2 { name="shiny.router"; version="0.1.1"; sha256="0biwni6bk39qafvsh8w32crlgm4hf8r9kwkmnlc3w5za2x2fja4c"; depends=[magrittr shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.2.1"; sha256="0m0f22qlmf7f2cf33myn72dm48yslqyx4kwzb96i78a3yz6a2awp"; depends=[htmltools htmlwidgets jsonlite magrittr purrr shiny]; }; - shinyAce = derive2 { name="shinyAce"; version="0.3.2"; sha256="1fbk5i6w6cpam8s3acf4bgdp8hajn4digjjix3i6i4q3p2rvn6zx"; depends=[jsonlite shiny]; }; + shinyAce = derive2 { name="shinyAce"; version="0.3.3"; sha256="02q6wqw349nlyf3mbf18cxif1xv9cal5qzccrdlnv73szqn9jk7j"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.1.0"; sha256="03fm2i1ydlp90w299nvz7dqs9724g0m2f0bc44ni8m2gz9cfpccs"; depends=[htmltools shiny shinydashboard]; }; @@ -11981,6 +12017,7 @@ in with self; { shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.1.0"; sha256="1vl80vp7yslnh0dvcrpysfn5rndjavphy31y15546q7ax7d0fn6v"; depends=[dplyr DT heatmaply htmltools htmlwidgets jsonlite plotly RColorBrewer readxl shiny viridis xtable]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; shinyLP = derive2 { name="shinyLP"; version="1.1.2"; sha256="1sjcll10ciq6pj9h8c6ybjqp8763wc423hddlalcblxxpajf6avz"; depends=[shiny]; }; + shinyMatrix = derive2 { name="shinyMatrix"; version="0.1.0"; sha256="14933x96cchkbdy0pw555vva7d83z5qyyjxxpz3gm6qwiipr9r3q"; depends=[jsonlite shiny]; }; shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyTime = derive2 { name="shinyTime"; version="0.2.1"; sha256="0gpa6kypchvvlq71nnlilciclcrhaa488prjz46sddrsxjy09mp7"; depends=[htmltools shiny]; }; @@ -11988,7 +12025,7 @@ in with self; { shinyWidgets = derive2 { name="shinyWidgets"; version="0.4.4"; sha256="1fgl024m4cvlw2c6j5gd1439dd7249rif4cjcv5m7676r7nygk1l"; depends=[htmltools jsonlite scales shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="1.0"; sha256="0ngmpbzw6fw1gs6sv9m3xv2c9bmrxg0bs6lnvxn8hm8cwr4440xi"; depends=[digest shiny]; }; - shinyanimate = derive2 { name="shinyanimate"; version="0.2.0"; sha256="04knbwv8ls23ibwj0gnnpmvnich9nbakx4pjfawghwlm75z9bpdk"; depends=[shiny]; }; + shinyanimate = derive2 { name="shinyanimate"; version="0.3.0"; sha256="0vshid5mfq006cprjj61d0g7ajyc3plc66x55c5jjmijwbp6pw7a"; depends=[shiny]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="0.2.0"; sha256="1bpzsm7m7c366sjl1qndp4m5dg2vlm68rjgdy9n1ija9xbp0r2g4"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; @@ -11997,7 +12034,8 @@ in with self; { shinyhelper = derive2 { name="shinyhelper"; version="0.3.1"; sha256="1z3wb3vdpz9pcn6rfmpbxky05cf8bxldhpwzldrmhn03spz3n987"; depends=[markdown shiny]; }; shinyjqui = derive2 { name="shinyjqui"; version="0.3.2"; sha256="1a73vsq1wc3xf14y64hkgnk5jgxj98b8aj3g0fs7mgayar3an5g0"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinyjs = derive2 { name="shinyjs"; version="1.0"; sha256="113zpijri0l80rlgrvqn6bxk0sdqgl79h7yhja2p76f9dc9i2sr8"; depends=[digest htmltools jsonlite shiny]; }; - shinymaterial = derive2 { name="shinymaterial"; version="0.5.3"; sha256="0lddw626mlb6vv474vv22pbjlwl1hgnjs8py3a30d84m94wg7p3z"; depends=[jsonlite shiny]; }; + shinymaterial = derive2 { name="shinymaterial"; version="0.5.4"; sha256="12bffpxy1a8vmml3b7k4vk2a25d6d25ims353ba88b745s50q9lw"; depends=[jsonlite shiny]; }; + shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; }; shinystan = derive2 { name="shinystan"; version="2.5.0"; sha256="18alf5kiqw7y2l6m5nxxizwc2znsf9frxfsqhvgcad8hld9cbya5"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; shinytest = derive2 { name="shinytest"; version="1.3.0"; sha256="0xgsbw72jpyjw0shg6vb8cxxw3948xhbl2sjx0d376fy2jb1rh43"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch shiny testthat webdriver withr]; }; shinythemes = derive2 { name="shinythemes"; version="1.1.2"; sha256="12miz44n2zxfswnia7p8dirxj3miw0aqn4pkx2111ikz67ax84rf"; depends=[shiny]; }; @@ -12006,13 +12044,13 @@ in with self; { shopifyr = derive2 { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[R6 RCurl RJSONIO]; }; shotGroups = derive2 { name="shotGroups"; version="0.7.4"; sha256="1x2ar8ybb972nd146gqz57hxybxc1myx862wbb743rpa70c7iawc"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; - showtext = derive2 { name="showtext"; version="0.5-1"; sha256="0zb9h6frw580cql0nbkvfb0jajq6k4yhqaifvz8cpysd32dk35wm"; depends=[showtextdb sysfonts]; }; + showtext = derive2 { name="showtext"; version="0.6"; sha256="1b0a9skqsrxj8r447wpma72a71kfkg3y01bnwz4p662kl623yqgr"; depends=[showtextdb sysfonts]; }; showtextdb = derive2 { name="showtextdb"; version="2.0"; sha256="1qwwj9x2jvadvwn60h75k99c9xi7yhqjsgaakahz5paxgj583bsh"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; - siRSM = derive2 { name="siRSM"; version="1.1"; sha256="0fx6bfb5c8hdlgjxddwhhzr09ls53kfgn36hjk9zi5z8m14a7wbn"; depends=[doSNOW foreach MASS rsm]; }; + shutterstock = derive2 { name="shutterstock"; version="0.1.0"; sha256="1vqbrjbwl2gdcf607f51cdzkjbkmk11n08mzx01j7bwcd278ny8r"; depends=[httr jsonlite]; }; siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; }; sicegar = derive2 { name="sicegar"; version="0.2.2"; sha256="0fnr0wv8zbhs2i5y1kqyvhm0kzisc68ys3iy0wxwbdj3bnfgzj70"; depends=[dplyr fBasics ggplot2 minpack_lm]; }; sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; @@ -12030,7 +12068,7 @@ in with self; { signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; sigora = derive2 { name="sigora"; version="3.0.1"; sha256="1pz9jibxjvvbc0wmd7sj2fss6hd8h1fvcg8vg72qwqvfy3f9jdry"; depends=[]; }; - sigr = derive2 { name="sigr"; version="1.0.3"; sha256="1i9sdjpwlwcjvy3x4am82f3pfcf5442vmgbi1z4aqryk9was51b1"; depends=[wrapr]; }; + sigr = derive2 { name="sigr"; version="1.0.4"; sha256="0yd0969qwlhfb22s66sb87g8xa0fgsiqz77cfnlb6jdy2z37j42y"; depends=[wrapr]; }; siland = derive2 { name="siland"; version="1.0"; sha256="0zqwslg0vak22q475azwank81wr4kfx33h21w84lsg7iihrb08nv"; depends=[lme4 raster rgdal sp]; }; sim1000G = derive2 { name="sim1000G"; version="1.39"; sha256="1qxl7lsdsd4skn6x8iw7jx60ly0rwsj27yh5yiqmhxa34jpyjg0m"; depends=[hapsim MASS readr stringr]; }; simEd = derive2 { name="simEd"; version="1.0.3"; sha256="1yq0qblrz0zddx682rzwdaa0k0r223i123la7wbp73spnn38g4br"; depends=[rstream]; }; @@ -12043,22 +12081,24 @@ in with self; { simPH = derive2 { name="simPH"; version="1.3.10"; sha256="0br32m28ynmhr4xal69bsv925rlmih898rk5bskn1s6bhsshalqq"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; simPop = derive2 { name="simPop"; version="1.1.1"; sha256="10dsr1rbglv5kwm5q05dxv4396wxwzhlf0851ynndlcbyxl8rvc0"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach laeken lattice MASS nnet party plyr ranger Rcpp RcppArmadillo vcd VIM wrswoR]; }; simSummary = derive2 { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind gdata svUnit]; }; - simTool = derive2 { name="simTool"; version="1.1.0"; sha256="121nv0s14jzxgcmj2fsj1k0msziknwbix2a49f7igic2l8yv869p"; depends=[dplyr plyr purrr reshape tibble tidyr]; }; + simTool = derive2 { name="simTool"; version="1.1.2"; sha256="1bnk42dgmgddw73l8pgqpgbpal6isxy9hjp5aamjkq8rpl3akwq9"; depends=[dplyr plyr purrr reshape tibble tidyr]; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; + simcausal = derive2 { name="simcausal"; version="0.5.5"; sha256="0k1dbg10bmpxc37nq9vk849qsdi09whc8r85rj08pbcfaac8cgfv"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; + simcdm = derive2 { name="simcdm"; version="0.1.0"; sha256="14icp5wwqrjds3qdhm602fds54i5x6vq2mj7r89nllak1kh5gqmw"; depends=[Rcpp RcppArmadillo]; }; simctest = derive2 { name="simctest"; version="2.5"; sha256="038ipxww0n09sh8al5isbm1fikr8kazwxn9cj2d0wgm6cdpy681n"; depends=[]; }; simdistr = derive2 { name="simdistr"; version="1.0.0"; sha256="0r7qfrq4vcjqrzajc6xmn0rrkinqwbr8cqghgp4iklbhsjbk2xfl"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-12"; sha256="06zw9xhj8jwhmqwxxbj8hgz9cxrw1b4syy6z79aawv9cg1bnwfhf"; depends=[deSolve minqa]; }; simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; simex = derive2 { name="simex"; version="1.7"; sha256="0dmyxhg3bk23y08xbgwlg791pcl3131im3jkh9x5pjqczfjvim0a"; depends=[]; }; - simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; }; - simglm = derive2 { name="simglm"; version="0.7.1"; sha256="1y5j0a09svxq7gygw02l906pgs0lwv26qsikjy8vf5rmds58mcfd"; depends=[broom dplyr Matrix purrr rlang]; }; - similr = derive2 { name="similr"; version="1.0.0"; sha256="12s1jrhy5cl02hdggbg4dsv8afh9j4gpxhyixvllqaadl7425652"; depends=[R6 Rcpp stringr]; }; - simmer = derive2 { name="simmer"; version="4.1.0"; sha256="1cy09pbk1dcf5h7yd8s7lry1xv2wnglbdaqi6ywzwzxpyadcl6bh"; depends=[BH codetools magrittr R6 Rcpp]; }; - simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.0"; sha256="1i4vhklky7d837z35859jp5q43aabcw5zk3936017awdsn4fkn9r"; depends=[simmer]; }; + simexaft = derive2 { name="simexaft"; version="1.0.7.1"; sha256="0n3n2g07pnpcqhbrjf78lbvqvc136g7jxlx6q27vnk96kwizh3f1"; depends=[mvtnorm survival]; }; + simglm = derive2 { name="simglm"; version="0.7.2"; sha256="1dg44fkrayhpwz63ga77jbkadghcldqggwc4jcrmfwzwbwbz5sr0"; depends=[broom dplyr Matrix purrr rlang]; }; + simmer = derive2 { name="simmer"; version="4.2.1"; sha256="19nsj93mh8hbfdc7z0gd06ydljn7yyn3fz5d6jz8pdvd1sy99z58"; depends=[BH codetools magrittr R6 Rcpp]; }; + simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.14"; sha256="0w72064h8s6b2fhz5nv3i6c86wvcxfvhybb96vh5ykr1xkqpybbh"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simmr = derive2 { name="simmr"; version="0.3"; sha256="18ycrd7qbz7frvd3bgbqaaapslw1jw89fy3np5qyb9sswyk08w9m"; depends=[boot coda compositions ggplot2 MASS reshape2 rjags viridis]; }; - simode = derive2 { name="simode"; version="1.1.1"; sha256="1v72ja8jf33biljqc64s35iv2q8igk62z852y5fxwssckm1nhcdd"; depends=[deSolve pracma quadprog]; }; + simode = derive2 { name="simode"; version="1.1.2"; sha256="1jxds57rpk629ar7kcpwzc33wkrznk2dkq9j9dqc97l6yw2h7aaa"; depends=[deSolve pracma quadprog]; }; + simone = derive2 { name="simone"; version="1.0-4"; sha256="09d8kdg2wxpmjgcn4dk6yqr6nmf7mzqqi6x1rz3fv7qknja6l1xi"; depends=[blockmodels]; }; simpleCache = derive2 { name="simpleCache"; version="0.3.1"; sha256="14jrsfxcrndfgi7yl5frfsyixxkhagc7cfav8h6mf6apfxx0v1ls"; depends=[]; }; simpleNeural = derive2 { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mppvgcvwsgg3nz6ci37l95ins64g0jh4rw6lfmy0grjc"; depends=[]; }; simpleRCache = derive2 { name="simpleRCache"; version="0.3.2"; sha256="0ldmxa5rw1kcb24swnk8s471ww11jfbscynaahnnsi0zzqmhwirk"; depends=[digest]; }; @@ -12067,14 +12107,14 @@ in with self; { simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simputation = derive2 { name="simputation"; version="0.2.2"; sha256="0bn5pq3gbsjc7sdivki98k9cb0sp5wkpm0bwi4mdnvpd7r2psb1n"; depends=[gower MASS rpart]; }; - simr = derive2 { name="simr"; version="1.0.4"; sha256="1mm0kfisa8yq81rd9l7vmxcklj4v1fy9a7dh0yzar5vn0wh18pr1"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; + simr = derive2 { name="simr"; version="1.0.5"; sha256="1j5w93iliykfnpxl9kzh1rp6d3iy26ksj3j7yjl348yvplh0iyjl"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; simrel = derive2 { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; }; simsalapar = derive2 { name="simsalapar"; version="1.0-10"; sha256="1q7kh44xl7q48vpqbyrp85my6x97l4fqq36bry8vg3k5riihirzf"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive2 { name="simsem"; version="0.5-14"; sha256="1sg1zmngpviqpbsy8kxnw4f4x93gy3gh02ykmcw8j9falfnd7g6i"; depends=[lavaan]; }; - simstandard = derive2 { name="simstandard"; version="0.2.0"; sha256="1m72ifrfk5adn3hkrwjf90p8k1bpmwai9wrjfg8myycr2s1iiwji"; depends=[lavaan magrittr mvtnorm rlang tibble]; }; + simstandard = derive2 { name="simstandard"; version="0.3.0"; sha256="0fg5y6n5ydn6qxbd5sdbxh3aqj4i7qk7h9c28i3s5z4s9rxgycdj"; depends=[lavaan magrittr mvtnorm purrr rlang tibble]; }; simstudy = derive2 { name="simstudy"; version="0.1.10"; sha256="0wc3464np94m429jrwdna3im1z2r2yq2xxxr212ndw6is0bb5w9s"; depends=[data_table mvnfast mvtnorm Rcpp]; }; - simsurv = derive2 { name="simsurv"; version="0.2.2"; sha256="1dfn156mm08l1cyp6wy69rd9a2lyy7qlbqa59jq35n9fhpjbrif0"; depends=[]; }; - simtimer = derive2 { name="simtimer"; version="3.0.0"; sha256="0hfp652s97dz07fs92gfsaiwd6pwg95qsvr6qjwj1k5d3h6hzf8y"; depends=[]; }; + simsurv = derive2 { name="simsurv"; version="0.2.3"; sha256="0jlacjgrnnlmcl6k83clfkdfb1kr2xbyz2zcmq1f3xg2z0zwypjq"; depends=[]; }; + simtimer = derive2 { name="simtimer"; version="4.0.0"; sha256="1c5017xmh4767d75k4rs1pssyn7p5w41bcsjjmwk4c9g6w1jgx1w"; depends=[]; }; simukde = derive2 { name="simukde"; version="1.1.0"; sha256="0g4qb57q1g9ixl70zwiw8y934gcr421xmz4dl515lxzfzk0605fc"; depends=[ks MASS mvtnorm]; }; simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; @@ -12084,11 +12124,11 @@ in with self; { sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; siplab = derive2 { name="siplab"; version="1.3"; sha256="1wl7i8i24mwmndkfjbk38kn49x4hrcs52sq1hfw8crqa20knaf12"; depends=[spatstat]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; - sirt = derive2 { name="sirt"; version="3.0-32"; sha256="0rxshvpr82j5f90c337jzx8dlz355azm8sfn1xq8kvxjr6brymyb"; depends=[CDM coda lavaan lavaan_survey MASS mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; }; + sirt = derive2 { name="sirt"; version="3.1-80"; sha256="08ni9c6z0fhsjvpfy3c4jjgv5mjhsmxb0qfcm96k0sr61cvl2cbf"; depends=[CDM coda lavaan lavaan_survey MASS mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sitar = derive2 { name="sitar"; version="1.1.0"; sha256="1a2x6igzq0i1vac54xyiq14vzx0m20431nv7aw0anv0lss7xy6r8"; depends=[dplyr nlme quantreg rlang tibble]; }; - sitmo = derive2 { name="sitmo"; version="2.0.0"; sha256="11mzkdh01cfazxqxxlhm0ifbiggpw54k5n9qpz3vxbq10v9720h9"; depends=[Rcpp]; }; + sitmo = derive2 { name="sitmo"; version="2.0.1"; sha256="0apdhwy3kxs39agsbvx5vn3xsgb22bf3jrwmr2cmqk9kmxbx740c"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-4"; sha256="0ypn9y1kighvh17yj1v83dkj973vqgzbr5lmkl761lam3m1fglq0"; depends=[data_table lattice latticeExtra]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-2"; sha256="0w4gbdjphanfy614jv4zp70kl901zz5hblk35lyv7rjxifq5bpx0"; depends=[sitree]; }; @@ -12096,15 +12136,15 @@ in with self; { sizeMat = derive2 { name="sizeMat"; version="1.0.0"; sha256="05dw4hgpw5msgy5cabf5dixr6ma66i9wz9wlajihqkpbg134jz1k"; depends=[MASS matrixStats mcmc MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.6.2"; sha256="0x9pbchmz4qf4c9bi52dhhgv1phfj03q1hnxic8vndl6xwib63cy"; depends=[broom dplyr forcats ggeffects ggplot2 glmmTMB knitr lme4 magrittr MASS modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; - sjlabelled = derive2 { name="sjlabelled"; version="1.0.15"; sha256="0k21z9w5ys42d0ijraaa4l8n9izwsk226xflzhp3065xw4b19b90"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase]; }; + sjlabelled = derive2 { name="sjlabelled"; version="1.0.16"; sha256="1zi1ncna16zl9hcy7mzara4kjxqkgwcw9ncp388ss353wwc9y2nc"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase]; }; sjmisc = derive2 { name="sjmisc"; version="2.7.7"; sha256="0xm9pmq17maivmjsygwx3bdjd71hf829qbx735hyxa69z9dhp24q"; depends=[broom crayon dplyr haven magrittr purrr rlang sjlabelled stringdist stringr tidyr]; }; - sjstats = derive2 { name="sjstats"; version="0.17.2"; sha256="0c7g35vn7r9rylhp0gj1yfslg7jybwrhpqpp7vdcd90xfccih24r"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 magrittr MASS Matrix modelr nlme purrr pwr rlang sjlabelled sjmisc tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.17.3"; sha256="02na2pzxp88yp52h7vs959fgydiddmns39m9x4i0vz8fp016bdf8"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 magrittr MASS Matrix modelr nlme purrr pwr rlang sjlabelled sjmisc tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skeleSim = derive2 { name="skeleSim"; version="0.9.8"; sha256="1wxdl30cy8vr1cd0wcjxyklp6crw4bv8r77ma2dkzmxm2ma5jw92"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; - skimr = derive2 { name="skimr"; version="1.0.3"; sha256="1c6szryq4w6gipmz7s5nn5936dbwly013czlcl6fky2yrhhjf25v"; depends=[cli dplyr knitr magrittr pander purrr rlang stringr tibble tidyr tidyselect]; }; + skimr = derive2 { name="skimr"; version="1.0.4"; sha256="1w74l9zrvhj8103ri4jrxmp0aynr3y5zrpfqx1fwv9cvvfxwsxmf"; depends=[cli dplyr knitr magrittr pander purrr rlang stringr tibble tidyr tidyselect]; }; sklarsomega = derive2 { name="sklarsomega"; version="2.0"; sha256="05ar391bsaixv83dah3qzfi50avsjhn85niyq5n05sb8d5943z9h"; depends=[extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-11"; sha256="1a8nwlym6pf0z13nnw1id2wls9lq788860yhjaqd56c3slzfsymn"; depends=[clue cluster slam]; }; @@ -12134,10 +12174,10 @@ in with self; { smapr = derive2 { name="smapr"; version="0.2.0"; sha256="13nvcfz4c2ipfb6ad9x59fm950prpdd991lzvszkdhsp53d0z9l4"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; smart = derive2 { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[elasticnet gplots gtools igraph Matrix pcaPP PMA]; }; smartR = derive2 { name="smartR"; version="0.62.0"; sha256="1jc2zvys05xs8y24fsrqkfvg77dpcqd2ydq1rknh0j9m4qhd9x9i"; depends=[caret chron clues cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; }; - smartdata = derive2 { name="smartdata"; version="1.0.0"; sha256="011yhhyfczzp90bzzfy6zh9nl7ikr6g7d0nghx63qvh89i823g2s"; depends=[adaptiveGPCA Amelia Boruta checkmate class clusterSim denoiseR discretization DMwR FSelector functional imbalance infotheo lle magrittr mice missForest missMDA MVN NoiseFiltersR outliers RoughSets unbalanced VIM]; }; + smartdata = derive2 { name="smartdata"; version="1.0.2"; sha256="1j1ngvlaj0kx0kp8ffvndcd5kk8zamjrgx2dn156zp4zjsd27vhv"; depends=[adaptiveGPCA Amelia Boruta checkmate class clusterSim denoiseR discretization DMwR FSelector functional imbalance infotheo lle magrittr mice missForest missMDA MVN NoiseFiltersR outliers RoughSets unbalanced VIM]; }; smartsizer = derive2 { name="smartsizer"; version="1.0.1"; sha256="0m474f6dz0izwdh2xvgx6shsbkpr969ckcld56d7c589kjhapbrl"; depends=[MASS]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; - smbinning = derive2 { name="smbinning"; version="0.7"; sha256="1pf74ys0jgm160zrwf8kv5j5bgb4i9z8cayirfxhwjdw9rc0w61p"; depends=[Formula gsubfn partykit sqldf]; }; + smbinning = derive2 { name="smbinning"; version="0.8"; sha256="0fw4hxd5vr5h7lp7hj6xz06m1rdm74p46n15q6vyw7ywhpngrl6s"; depends=[Formula gsubfn partykit sqldf]; }; smcUtils = derive2 { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; }; smcfcs = derive2 { name="smcfcs"; version="1.3.1"; sha256="0f3sd4pz46wjpyw932qrxw4hr3fmdbjrhcrgfmvm89hp0r09vz74"; depends=[MASS survival VGAM]; }; smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; @@ -12178,6 +12218,7 @@ in with self; { snipEM = derive2 { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; }; snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; snnR = derive2 { name="snnR"; version="1.0"; sha256="0qrl5ivpmipibszx8k9fvd8g462zzdcmzbjj1hb8apv4z79gzima"; depends=[]; }; + snotelr = derive2 { name="snotelr"; version="1.0.1"; sha256="04kazyq5hhiznh0g1qd5l6yh82kjkvd1n4hslisdwas2v3wr2h82"; depends=[httr magrittr memoise RSelenium rvest shiny wdman xml2]; }; snow = derive2 { name="snow"; version="0.4-3"; sha256="1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.6-0"; sha256="00rq2xibzhx7441v9jg138a4fkmx28hifs4yyj3pwi8najf0df4n"; depends=[rlecuyer snow]; }; snowboot = derive2 { name="snowboot"; version="1.0.0"; sha256="1fqvij959699bfyzc2b2dmgkm3nm119b2zg0jh29mpka3v5qqy3n"; depends=[igraph Rcpp Rdpack VGAM]; }; @@ -12199,10 +12240,8 @@ in with self; { sofa = derive2 { name="sofa"; version="0.3.0"; sha256="10f01a23bq6a30f95cilfan588dg0bg36y7g14q46rmcz15cqbrx"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - softermax = derive2 { name="softermax"; version="0.3.0"; sha256="0shsd7cbj8j8z65flyddkjdpigyyqpw4j6ljl9pl9hwasksi05gk"; depends=[readr xml2]; }; softmaxreg = derive2 { name="softmaxreg"; version="1.2"; sha256="0y1r4n83sv2744lpli65aip0c0cq823asb8gw9yy9yjjc9sbyr9s"; depends=[]; }; - soil_spec = derive2 { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56jmy34s6qc2j5fcfir6pa5as5prw0djyvbdv0"; depends=[GSIF hexView KernSmooth pls sp wavelets]; }; - soilDB = derive2 { name="soilDB"; version="2.3"; sha256="1xgaznpdp3mcqf3z4wnqz9ihr8283swrw90dak846yfddcswvzzy"; depends=[aqp curl Hmisc plyr raster reshape2 sp xml2]; }; + soilDB = derive2 { name="soilDB"; version="2.3.5"; sha256="1qljwr9b09ag51bh0ip5532fs6q6qagkm8rbjbi9xr869iw16zal"; depends=[aqp curl Hmisc plyr raster reshape2 sp xml2]; }; soilcarbon = derive2 { name="soilcarbon"; version="1.2.0"; sha256="1gxq7np5xh3jcqbsf8xva4b82rv6rab2j23mbkc4pjs6nbnzvzba"; depends=[devtools ggplot2 openxlsx shiny]; }; soilphysics = derive2 { name="soilphysics"; version="3.1"; sha256="11c094bqbwhggh0n3hdva1321gqzz2k1b7v3767wyyk1xpgzg98r"; depends=[boot MASS rpanel tkrplot]; }; soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; }; @@ -12238,7 +12277,7 @@ in with self; { sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="1.3.1"; sha256="0hsd00bmm6szvx0pjlprqg4749pwr39hippwvl5fkwm8fqb482p5"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="1.3.2"; sha256="007i8fm39gb6x1yakbf8g5l2dm08fgjh9dfxly4zdk1ih1h5b4zk"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; sourceR = derive2 { name="sourceR"; version="1.0.1"; sha256="01qxa44s9szaxl0rdcx4p0wn4vby17hdzdjzpsbls3prsnr0jaad"; depends=[assertthat cluster dplyr gplots gtools hashmap R6 reshape2 SPIn tensorA]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; @@ -12248,7 +12287,7 @@ in with self; { spBayes = derive2 { name="spBayes"; version="0.4-1"; sha256="1cypl3kvcr7nwdkq59zpdhkasz0z5r2gk8hr6wf1a1992k8c33ag"; depends=[abind coda Formula magic]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.3"; sha256="0syb4x05j878jhcql8prfw1aqxmpi1idxk1d4xl52j32wngkpn8b"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.2"; sha256="0y00k96p96jgp84wbdhqfwsq2fg8c68gc5310rnzpiv3clws27fb"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - spData = derive2 { name="spData"; version="0.2.9.6"; sha256="059nly4gdfg0zxwkbkql6ai4jczcslwvdmdr34dqinjlnb7nw547"; depends=[]; }; + spData = derive2 { name="spData"; version="0.3.0"; sha256="162cqb331ki43jx4r8lpkjpn2l712figd896rnawg9j1jmjyl96y"; depends=[]; }; spFSR = derive2 { name="spFSR"; version="1.0.0"; sha256="0094plnjlyhnnjqw3i4an5q95bw6hjy1gzc7zr6wy77faivqsbms"; depends=[class ggplot2 mlbench mlr parallelMap tictoc]; }; spGARCH = derive2 { name="spGARCH"; version="0.1.6"; sha256="10ksbqk5s9qq6lz17h07kmg2gr1ppq2rjm06kipscs9v0zldki9l"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.9"; sha256="10cvha5j2pi3b2qiq3jbrc10yi84a595zlg0wshx3wrzxb1rim85"; depends=[]; }; @@ -12259,12 +12298,12 @@ in with self; { spThin = derive2 { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3"; sha256="0vzqig9dq4k6p5s2gbm5arqiih28ghzjx0fs7ml70vx2f181jrxi"; depends=[coda extraDistr sp spacetime]; }; spa = derive2 { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; }; - spaMM = derive2 { name="spaMM"; version="2.5.11"; sha256="1vas9b4s495vh6w4i0kilv9psyhw5amb597x5r95dysgp53xa15s"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; }; + spaMM = derive2 { name="spaMM"; version="2.6.1"; sha256="0dlrac9fk6hav9b6xa6i0krim7q31piz58y3zc96xsn60gbskprj"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.0.1"; sha256="005jz7bm3c7zi3pgm8wyivc2kl058c0lwdjjzv0qb1vdsq9mpxx1"; depends=[MASS permute RcppTN Rfast sna vegan]; }; spacejam = derive2 { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; }; - spacesRGB = derive2 { name="spacesRGB"; version="1.1-1"; sha256="1298dxzli8f4bpv8114y7d9r7d2i80qvbmc9n67znpg5wdib79b7"; depends=[]; }; + spacesRGB = derive2 { name="spacesRGB"; version="1.2-2"; sha256="0rl5xh4pa29ab3ckqhb4pq7s8x76738na320kzhidyhj6x39a6kf"; depends=[]; }; spacesXYZ = derive2 { name="spacesXYZ"; version="1.0-4"; sha256="04387yrz9kmr4y10d6dg2z0nn56qafgi1v08jfw5wcwq12cm7052"; depends=[]; }; spacetime = derive2 { name="spacetime"; version="1.2-2"; sha256="0bgaarh2ibj3z6z504mzcb94x6w2bh5vyn1ar1lllqf4wn93z78y"; depends=[intervals lattice sp xts zoo]; }; spacodiR = derive2 { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; }; @@ -12285,7 +12324,7 @@ in with self; { sparkavro = derive2 { name="sparkavro"; version="0.2.0"; sha256="005pdfb08clq2fsabdxcbmd4n8nj5ix6yqk5pxpv3gvrzw8s7y32"; depends=[DBI dplyr sparklyr]; }; sparkbq = derive2 { name="sparkbq"; version="0.1.0"; sha256="0jcxnivi5zfbixmdywhn1v42lxi085wh7r4c26laclz9j2wvj8mk"; depends=[sparklyr]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="0.9.3"; sha256="119wbric965rj5mn4rz7hjxq91w83pc9kj2dmdbp1sqisng1ph7y"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr forge httr jsonlite lazyeval openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi shiny tibble tidyr withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="0.9.4"; sha256="0brvyv65gbhhkxqpmxrg24a9jw18yqgkbfgd3d067lw3m0xw07x4"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr forge httr jsonlite lazyeval openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi shiny tibble tidyr withr xml2]; }; sparklyr_nested = derive2 { name="sparklyr.nested"; version="0.0.3"; sha256="0lva7fbjp253kxq3970h52cr8s52xycbi03d5shsyna8grhkbczj"; depends=[dplyr jsonlite listviewer purrr rlang sparklyr]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; @@ -12311,7 +12350,6 @@ in with self; { sparsevar = derive2 { name="sparsevar"; version="0.0.10"; sha256="069r0kbypmx7pw3z2v9l17qidw3d73rzf5zs6yn1adyvpsddjxi8"; depends=[doParallel flare ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsio = derive2 { name="sparsio"; version="1.0.0"; sha256="12nbydgzl3qlanlsfdy8bvg6rxa439lv0z0vbyqssqwky3mmg5c3"; depends=[Matrix Rcpp]; }; spartan = derive2 { name="spartan"; version="3.0.2"; sha256="040iq7y5fk93zcvbinnmlhj9l8w3bjq3yqcf7v715i77hx5d18bs"; depends=[e1071 ggplot2 gplots lhs mco mlegp neuralnet plotrix psych randomForest XML]; }; - spass = derive2 { name="spass"; version="1.2"; sha256="0vf7fl68ibv6bwj6v3mh7d0l809kxlcjjgpwqhpgrkqmk1qvzgss"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spate = derive2 { name="spate"; version="1.5"; sha256="1hlh4iwx1lrl8r2gag33z2xdv6k4hg86ch4f0jlqnqkhm9hapshf"; depends=[mvtnorm truncnorm]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-1"; sha256="0n7f3r4ahv1w5mwx5mnib3g4263kz73rh1fcfk5wb12y52x8n1iz"; depends=[Matrix Rcpp]; }; spatial = derive2 { name="spatial"; version="7.3-11"; sha256="04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32"; depends=[]; }; @@ -12328,16 +12366,16 @@ in with self; { spatialrisk = derive2 { name="spatialrisk"; version="0.4.1"; sha256="0r65y3ch53gbfb0di0svlb2zr39b5v0gbgjh713jgnw44g2g43r3"; depends=[Rcpp RcppProgress]; }; spatialsegregation = derive2 { name="spatialsegregation"; version="2.44"; sha256="02s75q6ylzm6xzr1q23fhps3svlb0ix86dzgr23wf42369gs7h0g"; depends=[spatstat]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="1.3.1"; sha256="139m6jaw6f5gglwqrd4f5mzr4vkqk2r1a069971y7ap2klzzbhns"; depends=[ggplot2 plyr Rcpp RcppArmadillo reshape2 tidyr VGAM]; }; - spatialwidget = derive2 { name="spatialwidget"; version="0.1"; sha256="1f63mb2h1j08aajl73gvmp6q6vxm4z5q459hkdjwkfn4dijkmfbc"; depends=[BH colourvalues geojsonsf jsonify rapidjsonr Rcpp]; }; - spatsoc = derive2 { name="spatsoc"; version="0.1.4"; sha256="0h41ql1ll1ypmwfjczk3pls78z75xz8qakl61xrynqmw0y7l9fys"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="1.57-1"; sha256="1mpwh65g2jp2m58whwi6sw1ngajdrgn7sd64xmnijplcwjyy9zvr"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; + spatialwidget = derive2 { name="spatialwidget"; version="0.2"; sha256="105pgsv4dq3pmk9bylb3fxzvp44frfp6xcvq5d01ja4gnwmb35p2"; depends=[BH colourvalues geojsonsf jsonify rapidjsonr Rcpp]; }; + spatsoc = derive2 { name="spatsoc"; version="0.1.6"; sha256="0ng4daf4kj50wfqvs2pzp3kb10mmm73f6mdi0dkah0wl9r2qxi8p"; depends=[adehabitatHR data_table igraph rgeos sp]; }; + spatstat = derive2 { name="spatstat"; version="1.58-2"; sha256="1fjg9dlxkp99z6vpv0y7prnvwjajb7gyjff7m745dvqaj72hd292"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; spatstat_data = derive2 { name="spatstat.data"; version="1.4-0"; sha256="137cf9x6qcp7lw3rpjqizsy73z99yihff8gr434wlz7b5fwmn7hj"; depends=[spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="3.5-7"; sha256="1sdcx4qxv0z5q97rljn34mssbs4w6qbqxhn71xmkns01xypl1wr2"; depends=[spatstat spatstat_utils tensor]; }; spatstat_utils = derive2 { name="spatstat.utils"; version="1.13-0"; sha256="0wijib2fmmvz5sf2sp212ms88ffhcz9c1d0j2ljdxf222lp6v8l1"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="1.2"; sha256="0acg6n5qs3z9c7y2n3amla61dm3z1p16njkx0h52dlgdbj5v1nhn"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; - spbabel = derive2 { name="spbabel"; version="0.4.8"; sha256="1f0lradf7a3fjkdhbviw24awpqj1pzw1wfvigrqhnmf0jjw3nng3"; depends=[dplyr sp tibble]; }; + spbabel = derive2 { name="spbabel"; version="0.5.0"; sha256="0jwv3mirm5wkfqja0nwy25nfndis8px4awpjh4hk9bi77dfy14bf"; depends=[dplyr sp tibble]; }; spc = derive2 { name="spc"; version="0.6.0"; sha256="118r2yjfmzm0bi3ccx9pzi56vw2kbjz0pbxrjqdks0075fk7ij0q"; depends=[]; }; - spc4sts = derive2 { name="spc4sts"; version="0.3.1"; sha256="1g7q3g486qns8qwpki2nbiy995v7fl1ibmk4645ws9yxgybw5mxj"; depends=[gridExtra rpart]; }; + spc4sts = derive2 { name="spc4sts"; version="0.4.0"; sha256="1h7xdacqqkcphk61m2npip3yf09dikxmbi4gxqy1485fr3dq0p6x"; depends=[gridExtra rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.3-8"; sha256="1hw3njn2c8wj8bk2qpnbi2mbhj485q3gpbjf1gq9k6my4brdp86b"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; @@ -12345,13 +12383,13 @@ in with self; { spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; spdep = derive2 { name="spdep"; version="0.8-1"; sha256="1c13y9zjklqr6y87kra9i9mcf5n0zvd80iqmhg5l9bdzpd6x3h8b"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp spData]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; - spdplyr = derive2 { name="spdplyr"; version="0.1.3"; sha256="1f34yzj9z4f1dj7pqaayk0mvabzwa6kc3kwi1pmpikl1afgsyv25"; depends=[dplyr lazyeval rlang sp spbabel tibble]; }; + spdplyr = derive2 { name="spdplyr"; version="0.2.0"; sha256="1saphs0x5lvm9fr8ik57qrl3f7w23lbsz17qp53xl2c5b3snq3kv"; depends=[dplyr lazyeval rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.3"; sha256="0qh0kkxs6hk344k3fys0g9yy0xl0kwnwl18bgiak53fd1k7whskq"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; speaq = derive2 { name="speaq"; version="2.4.0"; sha256="1r65hmy050m69bjx6r6fkmwmqi8r1zlds2wg4vw9wj289klh8bvi"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra impute MassSpecWavelet missForest mQTL reshape2 Rfast rvest xml2]; }; spearmanCI = derive2 { name="spearmanCI"; version="1.0"; sha256="1xi51dphv91j5hgrd25sqs1li0g24cwpa1k162arw5b0qfl04f17"; depends=[emplik MASS]; }; - spec = derive2 { name="spec"; version="0.1.3"; sha256="0i1c5wjrca36zf5ak95i8n57hy1jj8w0qkkpnjqpn3xv3nvqccr2"; depends=[csv encode magrittr]; }; + spec = derive2 { name="spec"; version="0.1.6"; sha256="0732x4rnlm5yrm53b2v1nz3zbpj2a52hjgwzp9k206hh2qyvsipm"; depends=[csv encode magrittr]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; specklestar = derive2 { name="specklestar"; version="0.0.1.7"; sha256="04vm989yi31vqnf5rs6cdyikm4jzfd9njxh0ls3dvjrg19ipsnmn"; depends=[Rcpp]; }; specmine = derive2 { name="specmine"; version="2.0.3"; sha256="0lq9bv7xa8lfa4axr78ijyjlhdzimlini966729nknlq877mwdgz"; depends=[baseline caret compare devtools ellipse gdata genefilter GGally ggdendro ggplot2 hyperSpec igraph impute KEGGgraph KEGGREST MAIT MASS Metrics pcaPP pls qdap RColorBrewer readJDX reticulate rgl scatterplot3d speaq xcms]; }; @@ -12390,26 +12428,27 @@ in with self; { splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; }; splashr = derive2 { name="splashr"; version="0.4.1"; sha256="1gydnl6qdkqxvgzy3j6n8y4nan4wz6p7wybcgnm5p37n7q6m2rhk"; depends=[curl docker formatR HARtools httr jsonlite lubridate magick openssl purrr scales stringi xml2]; }; splines2 = derive2 { name="splines2"; version="0.2.8"; sha256="0ygzqq0swhcss5v8bn7qg98fpvp3wibbnbzkbpw4nvfd8bg51m1v"; depends=[]; }; - splinetree = derive2 { name="splinetree"; version="0.1.0"; sha256="14bqdad538nm4vps43gpyq3c9lv5hl28064mq9vyldgvvbdr40w2"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; + splinetree = derive2 { name="splinetree"; version="0.1.1"; sha256="1cspjj7757p7na8kvd3p0vjixmhv8pnmkazqp2x1j1c7wwgp48zq"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; - splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; }; + splitfngr = derive2 { name="splitfngr"; version="0.1.2"; sha256="0cf9y68m72j890a732m0n784nr12ydljr6s8i80f0in6q8lmw8ls"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.3.1"; sha256="01ip3brnlyxlxr1hmnmc2w6jg4vm5gjk8fwavclmv7m7hr2bb4xh"; depends=[dplyr tidyr]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.6"; sha256="03w6h64ga4zqilffdway4l38l5cbman4yrspkzhbigds12aqz25r"; depends=[data_table]; }; splm = derive2 { name="splm"; version="1.4-11"; sha256="15app94mxs6xlmqqhpa0q041skc4n4l2wfi6pmmhwinrgcqgncln"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; - splot = derive2 { name="splot"; version="0.4.0"; sha256="1g6n10pjjfhxa8sycr1iamwfdhjhp6g2zn5dkynfhg9j7v0dxnyf"; depends=[]; }; + splot = derive2 { name="splot"; version="0.4.1"; sha256="0pwn55s4l27p6lf12p8c1bsqcp229w1xr83l799mjsi4wvs6x7pn"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-2"; sha256="11xp6wnxizc8g91ci9fd7lbjc8pin84c9ak8lr8yg2jyd2l351j9"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-141"; sha256="1z29djg6az8dl47w0b9fpfwhng74xnbh5bq1asv55i8kdm1a4v1s"; depends=[]; }; splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-75"; sha256="14bg0yzwk3v0b1qrlfaxv48dpk380ha6wb2w4k02c9vmb51ysmw0"; depends=[splusTimeDate]; }; spm = derive2 { name="spm"; version="1.1.1"; sha256="0yz1fmh25yv5rdh5ny9xm3k177650ll03bp6pd1d2p8dgqyimv15"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; - spm12r = derive2 { name="spm12r"; version="2.8.0"; sha256="1f18f4z017j98kihixjsi9lngxp4fz2bnslfb0xqjzy7wq8d3y6x"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; - spmoran = derive2 { name="spmoran"; version="0.1.6"; sha256="15cz3ivs20yspdz36279gjcc4w4lr5anb5dyyl96lvz6gjdacb4g"; depends=[doParallel fields foreach ggplot2 Matrix rARPACK spdep vegan]; }; + spm12r = derive2 { name="spm12r"; version="2.8.1"; sha256="1ndak1ba6gh3hij0x4njr4hv6nfvq91dpgb0zdw0nl11bi6999b0"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; + spmoran = derive2 { name="spmoran"; version="0.1.6.1"; sha256="1kg443jv3gx9ywjmrbjsbc1fay85l5jnnx2iv0mw1vgb56x30sbh"; depends=[doParallel fields foreach ggplot2 Matrix rARPACK spdep vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.1"; sha256="0i77lpxrfa1jxi9znlmn5knmcjpf17q4hf8999b1x8lhqlhiizc1"; depends=[MASS]; }; spocc = derive2 { name="spocc"; version="0.9.0"; sha256="1azid8girmj4f0j4x9irljpxbsdpsxz572grb4fdjdxmlzpls7sy"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; + spongebob = derive2 { name="spongebob"; version="0.2.0"; sha256="19ppl4kj24941z8rpl98ir8mp6ky8x4dfh078a2agfs1b8mdrcpd"; depends=[]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; - sport = derive2 { name="sport"; version="0.1.1"; sha256="0sqlnapmfdmpsxs5gapcw8k4dbc5jfc48qa6lirvfqz85yg2xzxs"; depends=[data_table ggplot2 Rcpp]; }; + sport = derive2 { name="sport"; version="0.1.2"; sha256="1d5j42a6gx64pxh8bifrzc08z382sz55339f9237s6zq751pjjjy"; depends=[data_table ggplot2 Rcpp]; }; spotGUI = derive2 { name="spotGUI"; version="0.2.1"; sha256="1z664ricdsn8c29ks6hslm89f0qq6ls94pz4k256427cs95pk3ay"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; }; spotifyr = derive2 { name="spotifyr"; version="1.0.0"; sha256="1f7sv6qc8bim8vkcsma96zdzd1ci73dpag2dp27mqjcbh716xfy0"; depends=[dplyr httr lubridate purrr tidyr]; }; spp = derive2 { name="spp"; version="1.15.5"; sha256="097rb34kk20varsdf0d9gf3k2hxbislsirzgjm61ksrzmj96fj0w"; depends=[BH caTools Rcpp Rsamtools]; }; @@ -12437,15 +12476,16 @@ in with self; { squid = derive2 { name="squid"; version="0.1.1"; sha256="0qv9lazgiqazhq096ybmllalm2l2h794ry4p1r93c10msxg37sdp"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; sra = derive2 { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; srp = derive2 { name="srp"; version="1.1.0"; sha256="1655p3f7y50qjprm03gp5vffgnkin0c7ahzcrj6s8qfrd6gh2vsp"; depends=[fda mgcv]; }; - srvyr = derive2 { name="srvyr"; version="0.3.3"; sha256="0xarb92xhsb3c6g45lqq9kgp5yy0y9psi7yrn7yvv1a130lwzs40"; depends=[dplyr magrittr rlang survey tibble]; }; + srvyr = derive2 { name="srvyr"; version="0.3.4"; sha256="0xv7ix3a8jd28rrpyv1f54s6yf5avji0wbf598b4b3kvbp081mfp"; depends=[dplyr magrittr rlang survey tibble]; }; ss3sim = derive2 { name="ss3sim"; version="0.9.5"; sha256="0rdb49bfxvyh0jrqycrv1hxvh7y4kvw81jccjg5ma734x44q0vm5"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; - ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.2"; sha256="02v76prfv1ad7427d8l0md87c4ncmpprvadb0dyralpd8myk7z65"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; - ssa = derive2 { name="ssa"; version="1.2.1"; sha256="10x58c57pa9x6svm4h4xrss72ikin9lpf3ihjwmnkgnaicvsd0bx"; depends=[iterators]; }; + ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.5"; sha256="069jsp2l63jp4fv2hwadqxpkp89aqmbh439zy66rx55kws75b556"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; + ssa = derive2 { name="ssa"; version="1.3.0"; sha256="0lbwvw8f88wvlhzd469fww0av0nbi6l76vmmxbps0ifw2q87l00d"; depends=[iterators]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="2.0.0"; sha256="0w7c0blqny7dyjh1a6l9lr7nysgpmasfqbf7wf368rwmv59pk0b3"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; ssdtools = derive2 { name="ssdtools"; version="0.0.3"; sha256="1q6mg28bp48bgzr2ahbw16d9zbadhpq3mnd91c15cm4dq1airksv"; depends=[checkr FAdist fitdistrplus ggplot2 scales VGAM]; }; + ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; ssgraph = derive2 { name="ssgraph"; version="1.6"; sha256="0jann5jj95w38hk3l0w5psvymfnyjbpgzynqm724vcsc2yc1wb5n"; depends=[BDgraph igraph Matrix]; }; @@ -12470,13 +12510,13 @@ in with self; { staRdom = derive2 { name="staRdom"; version="1.0.8"; sha256="15khv32jbhjq73kr60al39ppf4pps7n48220jhp7sc04fcbi8fwd"; depends=[data_table doParallel dplyr drc eemR foreach GGally ggplot2 matrixStats multiway plotly pracma readr stringr tibble tidyr zoo]; }; staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; - stable = derive2 { name="stable"; version="1.1.3"; sha256="1fbyba91qi536mbb7hs6bvi1zgwdjvnv6ih7ykyyhkxk85cmfmq3"; depends=[rmutil stabledist]; }; + stable = derive2 { name="stable"; version="1.1.4"; sha256="01azqg4yi5wl6wfdpjq57w41x5z2b4dsp5n3vpkz24b9avk6rm8s"; depends=[rmutil stabledist]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; stablelearner = derive2 { name="stablelearner"; version="0.1-1"; sha256="19mvk6dzg8zg0nj1q4sraqg6h3zj8xvnfc0jql1xiqas9wcypx7d"; depends=[e1071 MASS partykit]; }; stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; stabs = derive2 { name="stabs"; version="0.6-3"; sha256="17sa0sjxf6h7gx1ga1pxhv17yrz3qisaivbf5cbc3asvshhswqg9"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.3.0"; sha256="184iz5ng7d31cgnn0b51hh11h1mn6pjdkfcm7ssvgbhs83j2x4r6"; depends=[]; }; - stacomiR = derive2 { name="stacomiR"; version="0.5.4.0"; sha256="0spkv1xx6mh2v41pba0gasymsb80xvqi42a3v0qqvd0ib8sgj2k7"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; }; + stacomiR = derive2 { name="stacomiR"; version="0.5.4.1"; sha256="1rjkk2al5k4bwwnlyzhjwk1y8ckfzcc8f4ln9ir53b2nh3z52f6j"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; }; stacomirtools = derive2 { name="stacomirtools"; version="0.5.3"; sha256="00zpsfrw0gcjbjr3xdxf2wacrr1zfw6wq7a2ycq32pbh2smbkz4k"; depends=[RODBC xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; @@ -12491,20 +12531,21 @@ in with self; { startR = derive2 { name="startR"; version="0.0.1"; sha256="12y57n3yip5rz4rln41896a15zv5b4c67k164282fh1p6ww9gr3r"; depends=[abind bigmemory future]; }; startup = derive2 { name="startup"; version="0.11.0"; sha256="1ibplrnzqv0z7mm8c3py5prlp4wg95xhk1jxv5i3z1w9ndqimbfv"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.5"; sha256="1dn7yr957qa47c0hxdq2c27qvdpg9iy5i0lwz4kijz9yph2daahh"; depends=[]; }; - statGraph = derive2 { name="statGraph"; version="0.1.0"; sha256="13wfylb92lzw08fn3p000v87abs7ij2rb82np1rkgsl8w2kica73"; depends=[igraph MASS]; }; + statGraph = derive2 { name="statGraph"; version="0.2.0"; sha256="03cxm3kvs88q7p8v859xzma97vlklx50yh3kgmmfzf4axdm6dcgm"; depends=[igraph MASS]; }; statar = derive2 { name="statar"; version="0.6.5"; sha256="0vmdrdq6db16vfl0rb39x8yfnbdzpcrvywfgp4lss6jby3nvjwd9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr]; }; statcheck = derive2 { name="statcheck"; version="1.3.0"; sha256="0ivybdcrymlsfv6pg6p5bv70qdvgxf2vgp0kf4r0pf2fcvav1mcp"; depends=[ggplot2 plyr rmarkdown]; }; statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; - states = derive2 { name="states"; version="0.2.1"; sha256="1f0cwv1jkl4nw0p31p147g71nira5f4hwq8lhjnmns28xq04by24"; depends=[dplyr lubridate]; }; + states = derive2 { name="states"; version="0.2.2"; sha256="1lw1gljmkn8i8fd4ng5c3jpqrwr0gkiyazppy19dp8xl94m1xa4b"; depends=[dplyr]; }; statesRcontiguous = derive2 { name="statesRcontiguous"; version="0.1.0"; sha256="0yzi6ycfj4cc4q0zzzckdz65wp9m4yx6fi7kp9nssj9pj6a8xlrp"; depends=[dplyr magrittr sf]; }; stationery = derive2 { name="stationery"; version="0.98.5.5"; sha256="0c7v9nhbcmdi4c2i185j3fbckqcjr6f0x1pw5dchsp4cw59nr1mc"; depends=[knitr kutils rmarkdown]; }; statip = derive2 { name="statip"; version="0.2.0"; sha256="012caxqa04qv3z49cz09qzh9crfbdc4il2d2b96l5d3qnqv9xbh9"; depends=[bazar clue rpart]; }; statmod = derive2 { name="statmod"; version="1.4.30"; sha256="07v4x8af60alcw6vbiwf5fp25bhra61kvxz9kqx64lszm0i1fb4x"; depends=[]; }; statnet = derive2 { name="statnet"; version="2018.10"; sha256="1v0l8bjnqzz9b0b32b31kqmasw0aw4hnlwidlr3xfhbd9clyhyiq"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; - statnet_common = derive2 { name="statnet.common"; version="4.1.4"; sha256="14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic"; depends=[coda]; }; + statnet_common = derive2 { name="statnet.common"; version="4.2.0"; sha256="0q942g6kqmqxfss1cxb3yg8y5r1k1h5cyy99s1cfisrn6hqc6xhi"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.5.0"; sha256="02344i8rhjxy8ainfvf5vn39g1nk2n448l76cg74cyxv6zv4f55w"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; + stats19 = derive2 { name="stats19"; version="0.1.1"; sha256="0f1mkfqfgb764c9f00xavgkxywf1q4rqmsyhp6axnqzjkjq509p4"; depends=[readr sf]; }; statsDK = derive2 { name="statsDK"; version="0.1.1"; sha256="0insx4sivac0nfxaa11iz9dd7374g51fcndsgljj3f14zw1xyq66"; depends=[dplyr ggplot2 httr jsonlite lubridate readr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.1-0"; sha256="1z0wfj1jxz02x7vl6sr651v85k88wg8rx0k2kkrwzc4ynim8shms"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tidyr]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; @@ -12512,13 +12553,13 @@ in with self; { stddiff = derive2 { name="stddiff"; version="2.0"; sha256="0mik01a8agcdpjq4r7lcdf3w2jcy6s9gx9zl7plzvnl2r3s5xw5b"; depends=[]; }; stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; - steemr = derive2 { name="steemr"; version="0.0.5"; sha256="012kiglvdpkwd701m5brhb87bljrkvw3j3v95ga5irjlddrgww34"; depends=[RCurl XML]; }; + steemr = derive2 { name="steemr"; version="0.1.3"; sha256="18q853jmnxir9zcyb6009p2b246v1bi5fy1mcxd0fhbhxvs3s8rx"; depends=[beginr blogdown data_table ggplot2 htmltab httr knitr lattice latticeExtra lubridate mongolite openair plyr purrr RColorBrewer RCurl rjson rlist RODBC shiny stringi stringr tm VennDiagram wordcloud XML zoo]; }; steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; stellaR = derive2 { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.1"; sha256="1ln5cvn4yldr8xdgadlfzkgxbv6im39mdsdz597zailqnfsr576g"; depends=[cluster igraph xml2]; }; stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; - stepR = derive2 { name="stepR"; version="2.0-2"; sha256="0inxlgihyivfr0l4gk8zq0043l9s5w4r3x3hwjlzfwbqjkwy1rjs"; depends=[digest R_cache Rcpp]; }; + stepR = derive2 { name="stepR"; version="2.0-3"; sha256="1vz7mr2zycn4w0zv4rg2dn4v4dbbpxv8vy20sl9nphya0w0w4mrg"; depends=[digest R_cache Rcpp]; }; stepp = derive2 { name="stepp"; version="3.2.0.0"; sha256="0fnjqbncadscv6ryvqyqf8qqgpfzh2hka5ld2zvw39mjqzy5gadi"; depends=[car survival]; }; stepwise = derive2 { name="stepwise"; version="0.3"; sha256="1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"; depends=[]; }; stevedore = derive2 { name="stevedore"; version="0.9.1"; sha256="0laib1vd9limzvxp2lij414a4mvbbx1j63rx4yzdyh6jiglm8l7h"; depends=[crayon curl jsonlite yaml]; }; @@ -12536,7 +12577,7 @@ in with self; { stoRy = derive2 { name="stoRy"; version="0.1.2"; sha256="1n2ivdv6fa3qkk2xhgcy8cixpbw6mijr4p8q34q8d9fvh9qs9g11"; depends=[data_tree R6]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; - stochvol = derive2 { name="stochvol"; version="1.3.3"; sha256="0cg61djjfw4jmq71g8kddrihdy9n2vlpzlf7kl2f3p8njc1f8kk2"; depends=[coda Rcpp RcppArmadillo]; }; + stochvol = derive2 { name="stochvol"; version="2.0.0"; sha256="0ac3sdx26z1agwpnqcq93hd5f3gs0ahqznaj13vxglsfadiad7di"; depends=[coda Rcpp RcppArmadillo]; }; stockR = derive2 { name="stockR"; version="1.0.68"; sha256="0pgyxh19csv21vgji1sjpqaaqb1wwz62mnsf85a97ba9aph9lxwb"; depends=[gtools]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; @@ -12544,14 +12585,13 @@ in with self; { stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.1"; sha256="16w6si2icpsyhkn0d3l6sh64nj6ynyymp7jxfwa792ds2wrz2mkm"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; }; storr = derive2 { name="storr"; version="1.2.1"; sha256="0409gb6wji3cjxkdcd0wc3jvsx61h3rxd8a3nr018y8rh1rpsaj6"; depends=[digest R6]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="0.2.6"; sha256="1v8x8gql4y6avxkpnjg4wb31hwim3admshwp4wcvfingxvzplxb2"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; }; + stplanr = derive2 { name="stplanr"; version="0.2.7"; sha256="0jxhg15fysj4x224g2s1hbjp8y6cyn53mzwhg1x5qax9h6cjrfyz"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom magrittr maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; }; stpm = derive2 { name="stpm"; version="1.7.7"; sha256="1l40zb9qwshg7saqmgi7c49a3jd93ycrbvmysgzs0q8pl94vgcfs"; depends=[knitcitations MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-3"; sha256="18icnfrlrcibrpw7vqkrhzfx880ak24xk6llwgiqw18r929mq1hw"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat splancs]; }; strandCet = derive2 { name="strandCet"; version="1.0"; sha256="019cacj0g9f6i8v03rq7qyph7f14d8n0qw0axvczijvnk99q602a"; depends=[boot corpcor MASS minpack_lm mvtnorm numDeriv]; }; - stranger = derive2 { name="stranger"; version="0.3.3"; sha256="0p0ssba5q192g7pviv1shmh1lpcdjmzdim3rp1qs3hrd1d3pn4vq"; depends=[assertthat data_table dplyr ggplot2 tidyr]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; - stratEst = derive2 { name="stratEst"; version="0.1.1"; sha256="1p4qzl29k10yxsflkbn6rscsqrh53wbn5v9zyjsnxl3bi6lwi6j7"; depends=[Rcpp RcppArmadillo]; }; + stratEst = derive2 { name="stratEst"; version="0.1.2"; sha256="045wmvkv9jxmazvy0p2dkf3200vy5gf124cv78132ysrnh2vcd4v"; depends=[Rcpp RcppArmadillo]; }; strataG = derive2 { name="strataG"; version="2.0.2"; sha256="1rf1xf07yb0dzasgig9sfm4i9ggdkjgy5iiysqgdapk3sxs26c8r"; depends=[adegenet ape apex copula data_table DT ggplot2 gridExtra Hmisc pegas phangorn RColorBrewer Rcpp shiny shinyFiles survival swfscMisc]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; @@ -12564,7 +12604,7 @@ in with self; { streambugs = derive2 { name="streambugs"; version="1.0"; sha256="1dyh5rwi47dn584nyy7f7vg5j5nlpz7ygcl8lwkj7prahplmzg5d"; depends=[deSolve]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; strex = derive2 { name="strex"; version="0.1.3"; sha256="1hd3f5qi7gl0hqd18hx4ic5fyvn38ayr3n226n76mw11gx76mgya"; depends=[checkmate glue magrittr matrixStats ore purrr Rcpp rlang stringr tibble]; }; - strider = derive2 { name="strider"; version="1.1"; sha256="00r6gbvwmla5h27iyi7rdfd0kr4alxz19fd7g2ba0in3779za3sw"; depends=[BH Rcpp]; }; + strider = derive2 { name="strider"; version="1.2"; sha256="0kfwanz80ki41yr5m0xw4nbbqgzl6zfvwqx906bxywlqiqi47cb6"; depends=[BH Rcpp]; }; stringb = derive2 { name="stringb"; version="0.1.13"; sha256="004bp75yhrgr480v9774kfq7z5l9z0761cnrwj4yk7fxygk89a1x"; depends=[backports]; }; stringdist = derive2 { name="stringdist"; version="0.9.5.1"; sha256="0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"; depends=[]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; @@ -12572,7 +12612,7 @@ in with self; { stringr = derive2 { name="stringr"; version="1.3.1"; sha256="0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs"; depends=[glue magrittr stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; - striprtf = derive2 { name="striprtf"; version="0.5.1"; sha256="1pv67grm8fb1plsfxrfrmv0yk6cjnf44ssawddlcxy9mvg3ka5mm"; depends=[magrittr Rcpp stringr]; }; + striprtf = derive2 { name="striprtf"; version="0.5.2"; sha256="1ra6aalalig6drsj26z9s24lmb10zssagqrvgqqi4358zbm8gwcd"; depends=[magrittr Rcpp stringr]; }; strucchange = derive2 { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; }; structSSI = derive2 { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; }; structree = derive2 { name="structree"; version="1.1.5"; sha256="0m14jzhmkfn8dpxjzj8xh9zf6cggqj3awnfz7zh1xlkkka91jz8d"; depends=[lme4 mgcv penalized]; }; @@ -12584,7 +12624,7 @@ in with self; { stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; }; styler = derive2 { name="styler"; version="1.1.0"; sha256="1z24mi88snbz1avjw9phq0lzmigddvycc56s83nxzr9w9z85mh05"; depends=[backports cli magrittr purrr rematch2 rlang rprojroot tibble withr xfun]; }; stylest = derive2 { name="stylest"; version="0.1.0"; sha256="0dr7j9fh8kp6wsqql38s3rk596xl6m9nx0w1l5v25hv2bphidxzr"; depends=[corpus Matrix]; }; - stylo = derive2 { name="stylo"; version="0.6.8"; sha256="1j27hyjsjs3y76lb0pn92ng23q0lk7w69vdx3429q610dixqdfim"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; + stylo = derive2 { name="stylo"; version="0.6.9"; sha256="14kr12gjbk7l6f4lz5m4j51vsjkyhnpgbiflsl327az5l0nrr5vw"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subcopem2D = derive2 { name="subcopem2D"; version="1.2"; sha256="1yrjqg3y6i5m6k0zljq1p1pciicmc1vig3qd0wxaicz708rbp3yq"; depends=[]; }; subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; }; @@ -12598,22 +12638,21 @@ in with self; { subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="2.0"; sha256="1vscmzw6ama2kc7ic6b2rfbbczcpyhp0m4dd5khg9vkyihww5b5h"; depends=[CTT irtoys]; }; - subscreen = derive2 { name="subscreen"; version="1.0.0"; sha256="04xkmiwwf0jaf4ij6kwbivrpy94hk030zcsm8jgf7xq5pb7rf5kr"; depends=[data_table DT plyr shiny]; }; + subscreen = derive2 { name="subscreen"; version="2.0.1"; sha256="0w1y60fzwf59ykcmk6yvdi4awqm8azpm0b288rjx1p0vzwl3i8hj"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr randomForestSRC shiny shinyjs V8]; }; subselect = derive2 { name="subselect"; version="0.14"; sha256="03sfnpj219a0ma92c2z953bh2y6s7w2c84lf2shnghmmxmg7jq9l"; depends=[corpcor ISwR MASS]; }; - subsemble = derive2 { name="subsemble"; version="0.0.9"; sha256="0vzjmxpdwagqb9p2r4f2xyghmrprx3nk58bd6zfskdgj0ymfgz5z"; depends=[SuperLearner]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; subspaceMOA = derive2 { name="subspaceMOA"; version="0.6.0"; sha256="1q2n4q87zaxwaak77b6rff97n9sx6nflshqf73r2q8hflfs3sxv3"; depends=[fields ggplot2 gridExtra magrittr rJava shiny stream streamMOA]; }; - subtee = derive2 { name="subtee"; version="0.3-3"; sha256="1hn34lmvapy52dnjfzzxi7qmb9f9in7qzbj017kacb901w782ky6"; depends=[ggplot2 MASS matrixStats survival]; }; + subtee = derive2 { name="subtee"; version="0.3-4"; sha256="0xsvbj9hrl7hiz39h22djh1hd92ngwsz4jd18vw8920ndngs8x28"; depends=[ggplot2 MASS matrixStats survival]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-11"; sha256="1hv9d99ir1xz6p0arxr77dv5qb45sr8jhapm6wf755l7pxlqqklq"; depends=[magrittr]; }; - sugrrants = derive2 { name="sugrrants"; version="0.2.1"; sha256="1k683h6z5dl01l0n3k8ivrbrl9byl9l38r9jq49hl70wbi9x810p"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; + sugrrants = derive2 { name="sugrrants"; version="0.2.2"; sha256="1laxrwc7dg0fcl1izxscvn6i1fk9ymjn27i07dg9bjgdxn8l38c1"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.1.0"; sha256="1ycdnf5ghrv3czi4lh5yc8n8690m3b8i85s46k7lya2k0rasvac4"; depends=[GBJ Matrix seqminer]; }; summariser = derive2 { name="summariser"; version="0.1.0"; sha256="0a6wyb0r1i0cynld002q96ylr58jz76n5jqjz8gm6a3csjn9qss7"; depends=[dplyr ggplot2 lazyeval plotrix]; }; summarytools = derive2 { name="summarytools"; version="0.8.8"; sha256="0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb"; depends=[htmltools lubridate matrixStats pander pryr rapportools RCurl]; }; sunburstR = derive2 { name="sunburstR"; version="2.1.0"; sha256="0dg988fnm9z1p14j2l604q4aqb83vrijvafbpc1l4kn0dg3cs1ff"; depends=[d3r dplyr htmltools htmlwidgets]; }; suncalc = derive2 { name="suncalc"; version="0.4"; sha256="190bnh26bl26piq6512ijrx2hygzdscryjsjyz8y4ara8bf646r3"; depends=[V8]; }; - sundialr = derive2 { name="sundialr"; version="0.1.1"; sha256="1f56hqh9ah5chwwr4ak39hc4q49hpzz398spifkv6zyd0sy8kc8s"; depends=[Rcpp]; }; + sundialr = derive2 { name="sundialr"; version="0.1.2"; sha256="16vjjznck5gaw02x73qf8hc5gvg8bd9wnjcxxm7y5a2bh9j44038"; depends=[Rcpp]; }; supc = derive2 { name="supc"; version="0.2.1"; sha256="121dy7ymvxvq3ksf17hg0df74ycd2nag2z2ggnw4p2rwzj99vgc5"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; @@ -12621,23 +12660,23 @@ in with self; { superbiclust = derive2 { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust fabia Matrix]; }; superdiag = derive2 { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[boa coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; - superml = derive2 { name="superml"; version="0.1.0"; sha256="0jnvxf3q95n2izck715na1dmy85n119955asc6fa3ank2qx4kdd2"; depends=[assertthat caret ClusterR data_table FNN glmnet kableExtra Metrics R6 ranger tm xgboost]; }; - supernova = derive2 { name="supernova"; version="1.1"; sha256="0n34fkscml6ldbcr6kk8c6n4f5z4j398qn1vsp06h3b0h6sl5rrb"; depends=[]; }; + superml = derive2 { name="superml"; version="0.2.0"; sha256="0h89fa9g6sn114zg94i27vaky9b92zhw9via0k60qifgm8s5fgbb"; depends=[assertthat caret ClusterR data_table doParallel FNN glmnet kableExtra liquidSVM Metrics naivebayes R6 ranger tm xgboost]; }; + supernova = derive2 { name="supernova"; version="2.0.0"; sha256="0nj7r0nqqhhi6hlwx4c6i57n26gbc4csml58spvmbnsbypbvc7c9"; depends=[]; }; superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; support = derive2 { name="support"; version="0.1.2"; sha256="1ih32hhgkbrdmjprqqf1sqlijgibzsrzh37i8jfmfb8n0d6h4x5a"; depends=[BH doParallel matrixStats MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; }; support_BWS = derive2 { name="support.BWS"; version="0.2-0"; sha256="1yfjpr9v9zsbkysm3r6zk9r0a072g038lmj9wk4014a3rk9kmm80"; depends=[]; }; - support_BWS2 = derive2 { name="support.BWS2"; version="0.1-2"; sha256="069n7kxl74v42rjxb153yk1p81izkbvi7k6r8zd5d78jx54w7igb"; depends=[]; }; + support_BWS2 = derive2 { name="support.BWS2"; version="0.2-1"; sha256="01qzlcbivs8ri7pr5mhii55np703s4zj21l5069wycc79y1k9rh3"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; - suropt = derive2 { name="suropt"; version="0.1.0"; sha256="11raanq6ijw8mmqsffqcckxvkc0pf8xyhwgyx97631mvpvxx6yqp"; depends=[DiceKriging DiceOptim dplyr emoa GenSA ggplot2 GPareto lhs mco pso purrr rgenoud tibble tidyr]; }; + suropt = derive2 { name="suropt"; version="0.1.1"; sha256="0fm3vq3d0r4ahjgdmxm06yyakngssryzvdd1w0my34m0nvk6cbq4"; depends=[DiceKriging DiceOptim dplyr emoa GenSA ggplot2 GPareto lhs mco pso purrr rgenoud tibble tidyr]; }; + surrosurv = derive2 { name="surrosurv"; version="1.1.25"; sha256="05s1skjp1vzwai2nfw65ff4q2qhbj596lhfvzd1gdrbs39r90hxh"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; }; surrosurvROC = derive2 { name="surrosurvROC"; version="0.1.0"; sha256="1dpqr9dqzckgvdfrb2ndxazra0lbp6db9wbjch4vig3kyz6nyw4y"; depends=[survival]; }; surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-5"; sha256="0pk70q33il9clz0ikzx1cypg5ygnsqp5hgk67xczzbidksjzs4dn"; depends=[flexsurv plotrix survival]; }; survAUC = derive2 { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; }; survAWKMT2 = derive2 { name="survAWKMT2"; version="1.0.0"; sha256="1cv39rf1ia4nwrri9d9izy6lxndnfwqy2vzrb9rrxga2qplxl79k"; depends=[survival]; }; - survAccuracyMeasures = derive2 { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[Rcpp RcppArmadillo survival]; }; survBootOutliers = derive2 { name="survBootOutliers"; version="1.0"; sha256="1gfh2n1kd1m4bpd1j7islm5ar1qmzycnmfpb8zl8ghv0z5rf5f09"; depends=[survival]; }; survC1 = derive2 { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; }; survELtest = derive2 { name="survELtest"; version="1.0.0"; sha256="0kqwiskwc1jr9r529ddyd28pj2j44iic69335kkhf5kkad8qx5jj"; depends=[Iso nloptr plyr survival]; }; @@ -12652,13 +12691,14 @@ in with self; { survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; }; surveillance = derive2 { name="surveillance"; version="1.16.2"; sha256="1k6wpzsagsq2ixpdhx6b4zzb5wv2j95nsmxyfwvlxkxafahx986h"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; - survey = derive2 { name="survey"; version="3.35"; sha256="09r43lpgai3hbblgw5ls8002fw4h6nlgra9k0v94zirjy9bhr98m"; depends=[lattice Matrix minqa numDeriv survival]; }; + survey = derive2 { name="survey"; version="3.35-1"; sha256="1nv4sdfmidvyjgvp3zvn5iw35bb8w0v7095is2pdy8cckkgdvr8i"; depends=[lattice Matrix minqa numDeriv survival]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; }; - surveydata = derive2 { name="surveydata"; version="0.2.2"; sha256="0rxyyvpl972z2qr54cwhm1il80kb1vvmvn9r8mji01nyxw6d9l91"; depends=[assertthat dplyr DT ggplot2 magrittr plyr purrr rlang scales stringr tidyr]; }; + surveydata = derive2 { name="surveydata"; version="0.2.3"; sha256="0krwzfhjkkjxrpj1xzyaj400xdgbvczi86vjwx4r9g8ys90nvm09"; depends=[assertthat dplyr DT ggplot2 magrittr plyr purrr rlang scales stringr tidyr]; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; surveyoutliers = derive2 { name="surveyoutliers"; version="0.1"; sha256="03nqw0zir3x57gg23hgsr2s99pv958kfsygqfwly96rvfdhr5p3v"; depends=[]; }; surveyplanning = derive2 { name="surveyplanning"; version="2.9"; sha256="0ad4122m78hbzhkkaspzpr62bl59w1j8z0qa67slqljjldhq1akv"; depends=[data_table laeken]; }; - survidm = derive2 { name="survidm"; version="1.1.0"; sha256="1piwhb8zsqnw284xp0l3ajs8r9amyn8yfng19hkci574mkdgsw4f"; depends=[doParallel doRNG foreach KernSmooth np survival TPmsm]; }; + surveysd = derive2 { name="surveysd"; version="1.0.0"; sha256="155917rfyaijpiiiqgggnyisknikx3xid4kjqvh9299bs769a169"; depends=[data_table dplyr ggplot2 laeken matrixStats Rcpp]; }; + survidm = derive2 { name="survidm"; version="1.2.0"; sha256="0dgcxhf8x1aavr4n4aqanfc23zd62dyk3h05sa04611h6n9l8j9c"; depends=[doParallel doRNG foreach KernSmooth np survival TPmsm]; }; survivALL = derive2 { name="survivALL"; version="0.9.3"; sha256="0lnvs7b097sl21gvnfafdprzvh197p1q4nzzagkdf4xm1xw8pj0h"; depends=[cowplot desiR ggplot2 ggthemes survcomp survival viridis]; }; survival = derive2 { name="survival"; version="2.43-3"; sha256="0ldrjja1dj4n1ic0lbggm7jvk52sl5h85i8m23nrgndi60acsv4r"; depends=[Matrix]; }; survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.1.0"; sha256="148l6qp9gwzpjh7hky9bayggal9cw629xabl34iklqvqlz1im7gb"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; @@ -12744,7 +12784,7 @@ in with self; { sysfonts = derive2 { name="sysfonts"; version="0.8"; sha256="0wng902plryf2d8fc7k7m3jx11acz51kb2d91cqbyhq7xpk06z43"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; systemfit = derive2 { name="systemfit"; version="1.1-22"; sha256="19nmhidnzyk2wcwi5v28n9lkvylfw4in63vg5naqlk3w4fbwm2wb"; depends=[car lmtest MASS Matrix sandwich]; }; - systemicrisk = derive2 { name="systemicrisk"; version="0.4.1"; sha256="1zimkyj58lk3iq5x4g6a76dain65j36s8c8jhx25sqjr5z2zmfsr"; depends=[lpSolve Rcpp]; }; + systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; }; syt = derive2 { name="syt"; version="0.1.0"; sha256="1qagd67wznyc6sfvs22lw2lwnwap1hlpf92i0ck5aif514ysi886"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.4"; sha256="0wf4rls7v7h7zkq2k550d16aqvaij27iim85cwif7dkbinajfngi"; depends=[dplyr dtt NLP textshape tidyr zoo]; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.5"; sha256="0qmkdsl0b2aw485vpbdqxdlfwg5a3i5bj4l67xv6h51fnbyfqfiz"; depends=[ArgumentCheck coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; @@ -12784,17 +12824,18 @@ in with self; { tawny = derive2 { name="tawny"; version="2.1.7"; sha256="1b2v0cgkmhzxy36dcdn6hnbqk6l5ac5c3myvwryf7wlp19xi786d"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; tawny_types = derive2 { name="tawny.types"; version="1.1.5"; sha256="1vg0hv91dif6cfqfzrf7m1qbk57fp8v97fp88whwmvs83yd521hq"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; taxa = derive2 { name="taxa"; version="0.3.2"; sha256="1kiffyfpgapap6m2k3wx7p89kzpdyk48nwbmqvfa883kvg0ddzcy"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; }; - taxize = derive2 { name="taxize"; version="0.9.4"; sha256="1p5rlc93q62rk2z3qcq02xfrs4pz699qdakk05pz6g9rlbqj342m"; depends=[ape bold crul data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; }; + taxize = derive2 { name="taxize"; version="0.9.5"; sha256="1qfn7xdrpvfq482cj9c50zdk836bf6cka87v00n720n9nsp971bs"; depends=[ape bold crul data_table foreach jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; }; taxizedb = derive2 { name="taxizedb"; version="0.1.4"; sha256="15gj9i18ysd83v9fidrrvw938dah04i10ahi3wh5dgjs5fd5ch2s"; depends=[curl DBI dbplyr dplyr hoardr magrittr RMySQL RPostgreSQL RSQLite]; }; - taxlist = derive2 { name="taxlist"; version="0.1.5"; sha256="17b7sdjjzragi8k08304idic0p8cj095h4p9vlpfidn8k6csrkv8"; depends=[foreign stringdist taxize vegdata]; }; + taxlist = derive2 { name="taxlist"; version="0.1.6"; sha256="0p68izdhqggra14g6n93124qnwrxmdy5f9x0617fmix5yc23rww3"; depends=[foreign stringdist taxize vegdata]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.5.1"; sha256="0a8knjyjs9w9nk9xmbny2hh5yfgmwmrj0d9wa58i28x6a7x54aq9"; depends=[data_table R_utils RSQLite]; }; - taxotools = derive2 { name="taxotools"; version="0.0.4"; sha256="0jvzyr476s21q1n9vylrpsahwqlyx1qalpaprf8kncv8407c1lwl"; depends=[taxize wikitaxa]; }; + taxotools = derive2 { name="taxotools"; version="0.0.7"; sha256="15p3hd469qdn9nsnj09xhr1j9jqd3l3japsdq5cgqiibagjbjjwb"; depends=[taxize wikitaxa]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; + tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; tbl2xts = derive2 { name="tbl2xts"; version="0.1.2"; sha256="1zz310253s6gz0hzzldil5r03mm7ngvvnba7hxm8fm9dhfmvkbj6"; depends=[dplyr lazyeval PerformanceAnalytics xts zoo]; }; - tbltools = derive2 { name="tbltools"; version="0.0.2"; sha256="07p2gwqwd11wcb25iz2vsgw5wp0hzdlrb6f7cxxfh2h8r4c9knb4"; depends=[rlang tfse tibble tidyselect]; }; - tbrf = derive2 { name="tbrf"; version="0.1.0"; sha256="011p14jbgswbkb1habk09117a8aywzg8zzdaz0qmyr9icab7dpf1"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; }; - tcR = derive2 { name="tcR"; version="2.2.2"; sha256="0r44l47pyvj8zc0qa74y048yzjvwf7qrcf635cq656spmf1yszl0"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; + tbltools = derive2 { name="tbltools"; version="0.0.3"; sha256="0n15d9xxckindl3kzisdzn7rqna5hja9vkyd81f4dlwzqknwvfxn"; depends=[rlang tfse tibble tidyselect]; }; + tbrf = derive2 { name="tbrf"; version="0.1.2"; sha256="03n9s2n5y9d669l78v6s2dbk3sz51g5v28301ng2w082njrsvxhv"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; }; + tcR = derive2 { name="tcR"; version="2.2.3"; sha256="057bbzvzgrsq1sgrs874mjgq4xqcy33rg960x1r20bnkvl3cimcf"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; tcgsaseq = derive2 { name="tcgsaseq"; version="1.8.1"; sha256="1v5b3qghygb81lqc2h1fijgw856b1778xndppq7r4b0zhhvb81ac"; depends=[CompQuadForm ggplot2 GSA KernSmooth statmod]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.4-1"; sha256="17md6l9v9dl9b72l84df01b52h2xiynbcjm437mv9mzcr09fc2sb"; depends=[]; }; @@ -12821,13 +12862,14 @@ in with self; { tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.4"; sha256="0wh14qy7fa7klb7yy272d16cvgfgnrf25wba3bqbpral9pv5nkmv"; depends=[ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; tensorflow = derive2 { name="tensorflow"; version="1.10"; sha256="15zzirwxwfp29a180w5kkb4dgmzc79zfi0w0hzsh8r5j7hnvcf7r"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; - tensorr = derive2 { name="tensorr"; version="0.1.0"; sha256="00zqklz3hqjv20giwqnd1d62x5hdm620hfdkn1x75i87dv92qn8m"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; + tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; tergm = derive2 { name="tergm"; version="3.5.2"; sha256="0p7qcr59p6n7snzspv02m8gn26rgk3rp2hxilmp5jailk43zid35"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; tesseract = derive2 { name="tesseract"; version="4.0"; sha256="1dadr3q0g8vr44rc0xmhism8llq3awl4svvrcghlrv7m85zps9ih"; depends=[curl digest pdftools rappdirs Rcpp]; }; - testDriveR = derive2 { name="testDriveR"; version="0.4.0"; sha256="1ri5wa0qab3mn921vycxrmzhs0g95dsdj1vxvcr5a999wggwabak"; depends=[]; }; + testDriveR = derive2 { name="testDriveR"; version="0.5.1"; sha256="0wjdqvsyv33fsg1lljp9m0bhz38mpfgpgickgj4zdspc9x6lbnv6"; depends=[]; }; testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; + testextra = derive2 { name="testextra"; version="0.1.0"; sha256="0n5d3a4fnqb9bc47sha5zyi18gd9k6hm1jkjlb7apk43zry6n0y8"; depends=[assertthat parsetools pkgcond postlogic purrr rlang stringi testthat]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.9"; sha256="0mayvbzfg7zkr9n38h0z9rkzxgpsck5vimfbgm70ww1ckggv7xlw"; depends=[]; }; testthat = derive2 { name="testthat"; version="2.0.1"; sha256="1cafy5xsjx6m08s45456mjsal7mfxzwpbrds0p4z3gwam948gpzy"; depends=[cli crayon digest magrittr praise R6 rlang withr]; }; @@ -12845,10 +12887,10 @@ in with self; { textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; textile = derive2 { name="textile"; version="0.1.2"; sha256="067zli6sl7bp9843spgx47hmw55aq61yinqw1lqifmrpk7b0ywk5"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; }; - textmineR = derive2 { name="textmineR"; version="3.0.1"; sha256="1bwqwda1c18qx8gjg6ikk3fgxhfq27l67f32qczhlc64v8j7zbks"; depends=[Matrix Rcpp RcppArmadillo RcppProgress RSpectra stopwords stringr text2vec]; }; + textmineR = derive2 { name="textmineR"; version="3.0.2"; sha256="1dgxdik2vv6jrza3aw1yfqf55ldznahmlga60rw99fz39bhrf7z9"; depends=[Matrix Rcpp RcppArmadillo RcppProgress RSpectra stopwords stringr text2vec]; }; textmining = derive2 { name="textmining"; version="0.0.1"; sha256="16wiykhrjs4djwa7q2wm4g8b3mrhh6hq9d9876w1j7c2s6zx69gd"; depends=[caret dplyr koRpus mallet networkD3 NLP rJava slam SnowballC stylo tm topicmodels wordcloud]; }; textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; - textrank = derive2 { name="textrank"; version="0.2.0"; sha256="0s2mnid3dha3nyyc9abhb36vlij4bg0024i9ay4pvvy4l1x947gr"; depends=[data_table digest igraph]; }; + textrank = derive2 { name="textrank"; version="0.3.0"; sha256="1sjzllz3ixxr043hbmbvwkwvj5wzh3m08x9z7h6hvy8ld8nzmn74"; depends=[data_table digest igraph]; }; textreadr = derive2 { name="textreadr"; version="0.9.0"; sha256="04nyjrfxgwq8g3bdj12nnkia2xn2zngk1rprlkpyicrisgq36agk"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; textrecipes = derive2 { name="textrecipes"; version="0.0.1"; sha256="1nnm7cpp99jlahhdl6aqz38dsr9wgm8z1pxblwqqribfh354vm5c"; depends=[dplyr generics magrittr purrr recipes rlang SnowballC stopwords stringr text2vec tibble tokenizers]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; @@ -12857,8 +12899,10 @@ in with self; { textstem = derive2 { name="textstem"; version="0.1.4"; sha256="1pbhi5ia3w16vsix2x3if51zd2v9bcv0j4lj9hfikgq1yz9zxmw2"; depends=[dplyr hunspell koRpus koRpus_lang_en lexicon quanteda SnowballC stringi textclean textshape]; }; textutils = derive2 { name="textutils"; version="0.1-9"; sha256="13fy5krm8giprw0jjdws8p4c5fra6r4vhbyzpf5aksacy125j66y"; depends=[]; }; tfdatasets = derive2 { name="tfdatasets"; version="1.9"; sha256="1djq3ywkzbnmmfr3fbdi6pg4sapqjh53dm2p5bil8f41maak12b7"; depends=[magrittr reticulate rlang tensorflow tidyselect]; }; + tfdeploy = derive2 { name="tfdeploy"; version="0.6.0"; sha256="1gmz5gif5flahfrmbc5pm43wy7xlkcag59jm8mn01l8g0sav2kg1"; depends=[httpuv httr jsonlite magrittr reticulate swagger tensorflow]; }; tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; tfestimators = derive2 { name="tfestimators"; version="1.9.1"; sha256="0da34iy7fyfzhbvaj8494sl6nrmhcfbqcr71l95ziaxgb8285ndm"; depends=[forge magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; }; + tfio = derive2 { name="tfio"; version="0.2.0"; sha256="16768rxz7d5xxasz4axcmsyygjpbm2sqglvjvpvd9cy50k56g401"; depends=[forge magrittr reticulate tensorflow tfdatasets]; }; tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; }; tframe = derive2 { name="tframe"; version="2015.12-1"; sha256="0k0favda3z6zdg7ykc2nnl28gxz7sfzbyr5pcifiyi984pa2zgfx"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; }; @@ -12884,7 +12928,7 @@ in with self; { threshr = derive2 { name="threshr"; version="1.0.0"; sha256="1zrhmqpz3k2gyddrzg96yyyc1jffj3aic2dmbidxxc97b9g5hi53"; depends=[revdbayes rust]; }; thriftr = derive2 { name="thriftr"; version="1.0.3"; sha256="08d9xi0czy8ci0aci75prjvfhpkmdw23qvcviap9kz2hr9x23183"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; - tibble = derive2 { name="tibble"; version="1.4.2"; sha256="05svbjkm1xqv56ybjgsqqg2pp8nn6hams1yxcr8aanbhzx9h6rqi"; depends=[cli crayon pillar rlang]; }; + tibble = derive2 { name="tibble"; version="2.0.1"; sha256="04rxf5x9awwa9c00v9p7d3a2lqnn7j2rjg4r219hmw7cbqlwrcks"; depends=[cli crayon fansi pillar pkgconfig rlang]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.1"; sha256="15rp66p4pgiv7fd0rx1pzqlpsg4i4j5j368cwqm1mf1m4xknz6yy"; depends=[assertthat dplyr glue hms lubridate purrr Rcpp rlang tibble zoo]; }; tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; @@ -12893,23 +12937,23 @@ in with self; { tidyRSS = derive2 { name="tidyRSS"; version="1.2.7"; sha256="0834g61fxdwvpxdr0a65k4k35iazwwzv792zjwj46391a2nmq5h7"; depends=[dplyr httr jsonlite lubridate magrittr purrr sf stringr testthat tibble xml2]; }; tidybayes = derive2 { name="tidybayes"; version="1.0.3"; sha256="1dkkzfbbq94vrrswf3g6dcds4vpvjn2kldf91f7642qf6kdgy135"; depends=[arrayhelpers coda dplyr forcats ggplot2 ggridges ggstance HDInterval LaplacesDemon magrittr MASS plyr purrr rlang stringi stringr tibble tidyr tidyselect]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="0.8.1"; sha256="1xw3r53wy3sy8rc08nprs4xfxplq6h1gmy1lhcwi8db922nyb671"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="0.9"; sha256="1ps46kljafpg4445sr6q4764hqxpk652czn7nfd0xz0551w001wf"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.0"; sha256="0n6km2zhdmbgacn6rzamrn506d9y3sl6yp2q6fd9x7kzgz09aq4n"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp tidyr]; }; tidygraph = derive2 { name="tidygraph"; version="1.1.1"; sha256="1gskh3l9vjwpp6h9knfhg241cbs2zwz6cx7sw565jbqxqspd7ymi"; depends=[dplyr igraph magrittr pillar R6 Rcpp rlang tibble tidyr]; }; tidyhydat = derive2 { name="tidyhydat"; version="0.3.5"; sha256="1b82pxkn54kil661hkc5dp52nkl4sdbc0qr835ax1j00ix4hzi0b"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyimpute = derive2 { name="tidyimpute"; version="0.1.0"; sha256="03b475nn206hxq3i0n7j1qws82rwwk5vqivmdg5mff44dvz4gl5s"; depends=[dplyr na_tools rlang]; }; tidymodels = derive2 { name="tidymodels"; version="0.0.2"; sha256="1hidjrayqxz1g7bn20pqs1bwyx4cxxqx9dq5lwqyfsij0ir0lia9"; depends=[broom cli crayon dials dplyr ggplot2 infer magrittr parsnip pillar purrr recipes rlang rsample rstudioapi tibble tidyposterior tidypredict tidytext yardstick]; }; tidyposterior = derive2 { name="tidyposterior"; version="0.0.2"; sha256="1sdbar3ycnjqyjy664zyhr9xks48l6g6mw8p5scp31x3gdh352rs"; depends=[dplyr generics ggplot2 purrr rlang rsample rstanarm tibble tidyr]; }; - tidypredict = derive2 { name="tidypredict"; version="0.2.1"; sha256="14vd8adqifxakdnkl1qnx8n8lc956g7mvzni749afv0avps8kpk4"; depends=[dplyr purrr rlang tibble tidyr]; }; + tidypredict = derive2 { name="tidypredict"; version="0.3.0"; sha256="1c0j69b976s6gz6vm8ql2mjnl8awzs25vpjkjfsvclpzalldcq06"; depends=[dplyr knitr purrr rlang]; }; tidyquant = derive2 { name="tidyquant"; version="0.5.5"; sha256="0kh3y291j5d6qbqr45jjzjpwa02r0ymb7gdr0zd9g3d4czllwv95"; depends=[dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod rlang stringr tibble tidyr tidyverse timetk TTR xml2 xts]; }; tidyr = derive2 { name="tidyr"; version="0.8.2"; sha256="03s9dv6c2dj65a769h8fgy9878y46rdq7x65i53kd44kag80i9cr"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; }; tidyselect = derive2 { name="tidyselect"; version="0.2.5"; sha256="0x3cp36byhfjajikr1lwffjm85ayw3bcs7d7kb0cydgs61ifiqjw"; depends=[glue purrr Rcpp rlang]; }; - tidystats = derive2 { name="tidystats"; version="0.2"; sha256="15f12zizgql1y303pr4vhmvpmpxib0wpybd0b5gbx281iglpdsc0"; depends=[dplyr knitr magrittr purrr readr stringr tibble tidyr]; }; + tidystats = derive2 { name="tidystats"; version="0.3"; sha256="11bl4m14n29fcy9g3b0sx10fx2kl6949fczzdzw2cllqn2krfx45"; depends=[dplyr kableExtra knitr magrittr miniUI purrr readr rlang shiny stringr tibble tidyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.3"; sha256="0mffzkgd5154ip03v125q0galmg2qyd0gb4m517mz95i38z6c2yy"; depends=[attempt rlang stringdist tibble]; }; tidytext = derive2 { name="tidytext"; version="0.2.0"; sha256="15xyn7mz81cm6dqsjvdb681q2sag9pp62kv11y0blyxd81wpy994"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.1.0"; sha256="154k3gn87fnmzhldyp7h0rq5gxpndwaf4gahqydhsh9i6dq61lk7"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - tidytransit = derive2 { name="tidytransit"; version="0.3.5"; sha256="0pxkn162i601lc8lwci1j4ns44yxc1d7zy7c7423ccqjpj85nm7g"; depends=[assertthat dplyr here htmltools httr lubridate magrittr readr rlang scales sf stringr tibble tidyr zip]; }; - tidytree = derive2 { name="tidytree"; version="0.2.1"; sha256="1sx69wvlp7k761cmglrzq2jxkm2iq27x6bhhdcisj62wryj96wb2"; depends=[ape dplyr lazyeval magrittr rlang tibble]; }; + tidytransit = derive2 { name="tidytransit"; version="0.3.6"; sha256="1w7jirgw4b9c3kh9s3mfy69k0vg89r6i0bh2sjy3ciwjgcyarv7m"; depends=[assertthat data_table dplyr here hms htmltools httr lubridate magrittr readr rlang scales sf stringr tibble tidyr zip]; }; + tidytree = derive2 { name="tidytree"; version="0.2.3"; sha256="13wjdmxmb2azhz2cm3xvw7vfm853xvr5p4agczw2yyvhpkqifsm9"; depends=[ape dplyr lazyeval magrittr rlang tibble]; }; tidyverse = derive2 { name="tidyverse"; version="1.2.1"; sha256="0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"; depends=[broom cli crayon dbplyr dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.4"; sha256="19kcm9lfbkf61z0whfkn69b8m36qd1rvyhyk5y0cqbzkxvq8f70i"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-5"; sha256="0asf2bws3x3yd3g3ixvk0f86b0mdf882pl8xrqlxrkbgjalyc54m"; depends=[]; }; @@ -12926,6 +12970,7 @@ in with self; { tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; time2event = derive2 { name="time2event"; version="0.1.0"; sha256="1xkvarw53lcn07wqq7ly5znr6vjq7x72xb0piq5igdmwqmg2y26g"; depends=[survival timereg]; }; timeDate = derive2 { name="timeDate"; version="3043.102"; sha256="0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"; depends=[]; }; + timeR = derive2 { name="timeR"; version="1.0.0"; sha256="107blad3cj42l2clmpcfbqjlicjxnhvw7zbaiwz873app98r0z8k"; depends=[R6]; }; timeROC = derive2 { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.3"; sha256="1jdmcbghqmp9phfx7bii8nfqdc10f1nqmi1mk70n0fysm6cdvhn6"; depends=[gss lattice pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="3042.102"; sha256="185hmd70hida6i12mxbrccapkpwb6jhf6cmcfbz8bc3sv9h3q5gs"; depends=[timeDate]; }; @@ -12935,20 +12980,20 @@ in with self; { timelineR = derive2 { name="timelineR"; version="0.1.0"; sha256="1a2pdy5b9nca66khydrb50yzjglr78lxrgzisw6bp2simk5cix51"; depends=[dplyr futile_logger ggplot2 gtable lubridate mtconnectR stringr]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; - timereg = derive2 { name="timereg"; version="1.9.2"; sha256="0ddckk8vrfkk4kwlrjms6niry6g6c8dz0yf96z2kq03jgs06kfdh"; depends=[lava numDeriv survival]; }; + timereg = derive2 { name="timereg"; version="1.9.3"; sha256="1hlj9qhzfyz3lqnlpn9r0madmik592zsgaxlnggf3r437nkbynwc"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.4.1"; sha256="1ghb3lg63fs9zx34l5qczv39mdccnmqzlc74l1zhb8qmsg8sm1g2"; depends=[data_table DBI jsonlite openxlsx RPostgreSQL shiny xtable xts zoo]; }; timetk = derive2 { name="timetk"; version="0.1.1.1"; sha256="0ca6xnsidc98yjb52gbafvfgxzdgszj8l9hvc77mwgc33g0ydvs1"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; - timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; + timevis = derive2 { name="timevis"; version="0.5"; sha256="1psmnl6pkbizi2kjpaz9w32z2dkxlh4r229mfxsfqnjvf9sc34kj"; depends=[htmltools htmlwidgets jsonlite lubridate magrittr rmarkdown shiny]; }; timma = derive2 { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; }; timsac = derive2 { name="timsac"; version="1.3.6"; sha256="186919qka9j3kfpdw2gbh16n48d6xgz9lfqgk4b17f1d7l72iplg"; depends=[]; }; tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; }; tint = derive2 { name="tint"; version="0.1.0"; sha256="1hczc2nrm8xgvw3igkfnlqyz73686l447kigsrd6m796v8ny1gbf"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.0.1"; sha256="1zw5a79mryqighf8b6gidsi30001749sllpwqwbck26cyal6m8y6"; depends=[checkr]; }; tinyProject = derive2 { name="tinyProject"; version="0.5"; sha256="10sllhjcla4pfgp5n1y5vi318q9bcy82j88rx3k1sgzmbq1nc1c2"; depends=[brew devtools]; }; - tinytex = derive2 { name="tinytex"; version="0.9"; sha256="08w5hyq3ysh631d5whgcfv1bb007cdc0bjhb83vwmhazs6rgvyjy"; depends=[xfun]; }; + tinytex = derive2 { name="tinytex"; version="0.10"; sha256="02bz8zaka5j51zin976n5nmk19a0390d0gwgj4zrbh48hl313rqm"; depends=[xfun]; }; tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.1"; sha256="09vw83hkf7lgd3xyhbmqkyv57g3dz856230xkf8630jiicfvcg3b"; depends=[rvest xml2]; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; tippy = derive2 { name="tippy"; version="0.0.1"; sha256="0kkyi4s4ffpyjyfl89cd5y788ab1p253rx179k422y3y1z6w1md7"; depends=[htmltools htmlwidgets jsonlite shiny]; }; @@ -12974,7 +13019,7 @@ in with self; { tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.2-1"; sha256="0rn8jqv622qmc0zkz534ka5qnbca2rlabxm3vjbqplr6fh1ahwb1"; depends=[NLP tm]; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; tm1r = derive2 { name="tm1r"; version="1.1.1"; sha256="1sxapq9yfv7hyzrn10xxqclw9vnh0bp2mrsi45bsr9wl0qkdfhcj"; depends=[httr jsonlite]; }; - tmap = derive2 { name="tmap"; version="2.1-1"; sha256="0928f7cqwqy66hp959mpaq7idb3riz6ahhfh26aidpaqc85lwqpw"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer sf tmaptools units viridisLite]; }; + tmap = derive2 { name="tmap"; version="2.2"; sha256="0dvplmwmin4zpz5n46f2yr2zibfmfs6gc6byb68c508k6m08b6vx"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer sf tmaptools units viridisLite]; }; tmaptools = derive2 { name="tmaptools"; version="2.0-1"; sha256="0zfj2q3p4xmb7xzpiidfn20g569fscyhryzcpmvwkp98a7fg9swz"; depends=[classInt dichromat KernSmooth lwgeom magrittr raster RColorBrewer rgdal rgeos sf sp units viridisLite XML]; }; tmbstan = derive2 { name="tmbstan"; version="1.0.1"; sha256="0l79fzmviy1r4hvjvhjl5yfck0j3xiq7qjc4jwvi6yfglbivii08"; depends=[BH Rcpp RcppEigen rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-12"; sha256="1gqmq3f0plgd44056905l5jd7x9k4ls06hcp006w8skxj1rnwzb9"; depends=[]; }; @@ -12994,18 +13039,19 @@ in with self; { tolBasis = derive2 { name="tolBasis"; version="1.0"; sha256="0g4jdwklx92dffrz38kpm1sjzmvhdqzv6mj6hslsjii6sawiyibh"; depends=[lubridate polynom]; }; tolerance = derive2 { name="tolerance"; version="1.3.0"; sha256="17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86"; depends=[rgl]; }; toolmaRk = derive2 { name="toolmaRk"; version="0.0.1"; sha256="0pdr8lq4c11ia03v68lbfq38p3qp770mbj0nsbjsgbqi0pv9i1vx"; depends=[dplyr ggplot2 plyr reshape2]; }; + tools4uplift = derive2 { name="tools4uplift"; version="0.1-1"; sha256="0difrjqgj8amc49mwh059ca9mr0z1fzy0g43vk43alsyl8lvajc4"; depends=[dplyr glmnet]; }; topicmodels = derive2 { name="topicmodels"; version="0.2-8"; sha256="19msp5cz67ff4v1gfd8vhjnnsmwfkxiv08ym4k506j2mhaklipci"; depends=[modeltools slam tm]; }; topmodel = derive2 { name="topmodel"; version="0.7.3"; sha256="15w9id90d6l0i0ji3ln3sxnpispb6pgabk4waysqn0nh6y4lfdgb"; depends=[]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; - tosca = derive2 { name="tosca"; version="0.1-2"; sha256="0zr0q0l4ic0hmmahgzm4hzjqzy0vxb31xsgmvqnvi8kya2bb68sh"; depends=[data_table htmltools lda lubridate RColorBrewer stringr tm WikipediR]; }; + tor = derive2 { name="tor"; version="1.1.1"; sha256="0vibnjm0q8rn73c5xdbfw5z4pk4ja1m1mx9c6p423pz72znwrcpw"; depends=[fs readr rlang tibble]; }; + tosca = derive2 { name="tosca"; version="0.1-3"; sha256="16vxhqr3496s39gvmxqr1qgbvlsiycl2flvbxvi61pxzbm4fn3yw"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; - totalcensus = derive2 { name="totalcensus"; version="0.5.1"; sha256="0b2mfci8fdfzw21nd1cgzx9vcvb0f27wdn0j58rszi1s7ngajl2v"; depends=[data_table magrittr purrr stringr]; }; + totalcensus = derive2 { name="totalcensus"; version="0.6.1"; sha256="1ks49iaay0sz345cm77kv61mxsnin5dsggdjabcc4mnsgwh6k1sb"; depends=[data_table magrittr purrr stringr]; }; touch = derive2 { name="touch"; version="0.1-4"; sha256="0xz3mvwhyn7wbqhbfp2klrnf89gvsncrv5y7fmk9ym3nkq7z26cg"; depends=[Rcpp]; }; touchard = derive2 { name="touchard"; version="1.0"; sha256="0hjki9y94kzapkik48dpdz3x5ybi1miy94mvn4klsgs54z68apsi"; depends=[MASS nleqslv numDeriv plotrix]; }; tourr = derive2 { name="tourr"; version="0.5.5"; sha256="12293kp36kz056zd3fnsaf2gy4g8mcs79ws0vgbs7b0hx09sy9vp"; depends=[]; }; tourrGui = derive2 { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; }; - toxboot = derive2 { name="toxboot"; version="0.2.0"; sha256="0qjnd6x6d4m8ycl6iq5iq45vhhf5w1amyw4smwbizx6hdhg9jm4h"; depends=[data_table tcpl]; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpe = derive2 { name="tpe"; version="1.0.1"; sha256="0zsa8vb4qmln3sb4lplv43lh50yys9vfd3rxfp6qxqqjxivd0xsh"; depends=[]; }; @@ -13025,13 +13071,13 @@ in with self; { traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajectories = derive2 { name="trajectories"; version="0.2-1"; sha256="0sw1gcwmz2d27ck8gm5xa9bmmpgpy483brdyi74wccchwb3nfw2m"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.1.0"; sha256="1wfncd3ays8wqz8hhwz46diyac49ivz31qm1rvy1gkbw71icmnd7"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.2-3"; sha256="1bbz9a57pmdalb9xmhawy9wjswcvr7lcb390plrs43lka2j55j6n"; depends=[basefun Formula mlt multcomp sandwich survival variables]; }; + tram = derive2 { name="tram"; version="0.2-4"; sha256="1amk432r9qbl5bx0rhswsaplad27hp529xf2l6k5mn098n30dn0m"; depends=[basefun Formula mlt multcomp sandwich survival variables]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; transformr = derive2 { name="transformr"; version="0.1.1"; sha256="186n789zzf2p9ggw9j7gmd4knfq051jhl35x1585jgll2karyn2c"; depends=[lpSolve Rcpp rlang sf tweenr]; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; - transport = derive2 { name="transport"; version="0.10-0"; sha256="15x366mlmb0iickgsa7lmgkdn25pfs9mn71vn96rks1a9xyl7qam"; depends=[Rcpp]; }; + transport = derive2 { name="transport"; version="0.11-0"; sha256="1krl9lycqs26bvd71lh2six6vwq5zwqx9yprx90djj51010m8ygz"; depends=[Rcpp]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; trawl = derive2 { name="trawl"; version="0.2.1"; sha256="1ns4nk8zdnl2z9clc2q38sbb1ijkj86lcifxq7d111mcwsmpb6fi"; depends=[DEoptim MASS rootSolve Runuran squash TSA]; }; treatSens = derive2 { name="treatSens"; version="2.1.3"; sha256="159dpd4wg0i4cidg40lad665sm3j4qch8d1y3k9chwggbhcad5jn"; depends=[BH dbarts lme4 mvtnorm nlme Rcpp RcppEigen]; }; @@ -13042,26 +13088,27 @@ in with self; { treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; treeclim = derive2 { name="treeclim"; version="2.0.0"; sha256="0hiba5xc6rp5zzka31k5klmlllpgbnla4pm920zk12jxn796953l"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; - treedater = derive2 { name="treedater"; version="0.2.0"; sha256="18y1nbpinpcnczyn0kwlcnhbmnxv7814ms6l5qfikdqrxd2gx3si"; depends=[ape limSolve]; }; + treedater = derive2 { name="treedater"; version="0.3.0"; sha256="0aiqznj8mmxmwmw15m9n1c6wbjawlixwqh8ch735jjbhq737d1s4"; depends=[ape limSolve]; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; treeman = derive2 { name="treeman"; version="1.1.3"; sha256="0xvazizpi3dbdgjd48ff4kg4dhsi2yzbnkk43pgyi21zii673yyn"; depends=[ape bigmemory plyr RJSONIO stringr]; }; treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; - treemapify = derive2 { name="treemapify"; version="2.5.2"; sha256="0iraqkvlk97xk8iv23nvcb144h195l3kbis3lm4r58prlgffyac3"; depends=[ggfittext ggplot2]; }; + treemapify = derive2 { name="treemapify"; version="2.5.3"; sha256="1y6fyzxk542fp4h975xfgajz7cjym3rjs6asal9arv94a9cqra33"; depends=[ggfittext ggplot2]; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; treeplyr = derive2 { name="treeplyr"; version="0.1.4"; sha256="140j1cd8a34fww8bi6b7mi3c7c1nik5sajk085nyfmjq7lxds0cy"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; treespace = derive2 { name="treespace"; version="1.1.3"; sha256="0s3hmmjx2hf8l0piwz6mddd80hb5jsljnpzpakighqj9iiah5jjv"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; + treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treethresh = derive2 { name="treethresh"; version="0.1-11"; sha256="1fksyn9mycr6dpw1yh5b3fa7fk7ndz7q39174daplm55jbrz1dr5"; depends=[EbayesThresh wavethresh]; }; trekfont = derive2 { name="trekfont"; version="0.9.3"; sha256="15p1r5q36fbajhwidjhhvvldckvz5js08w4cnj47gqr4lpmmpbx7"; depends=[]; }; - trelliscopejs = derive2 { name="trelliscopejs"; version="0.1.14"; sha256="1yjgn0a7jdfp1l3b1l8ss4pl23z9j4w27ny73mgmdbji02xqklyv"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; + trelliscopejs = derive2 { name="trelliscopejs"; version="0.1.18"; sha256="1i13l3a74cxppkffzbpnyh2faqdwj3gy55s4s0fck1fwpvlkn5zr"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; trend = derive2 { name="trend"; version="1.1.1"; sha256="1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q"; depends=[extraDistr]; }; - trialr = derive2 { name="trialr"; version="0.0.5"; sha256="0viiwv7wd6mzarf8zcdbrx3haka3vfsc94fl7kn4c0ibzkp092g8"; depends=[BH dplyr ggplot2 gtools loo magrittr Rcpp RcppEigen rstan rstantools StanHeaders stringr tidyr]; }; + trendchange = derive2 { name="trendchange"; version="0.1.0"; sha256="0j5rrahs0dsdnxs8g6qmkzvsahpfjhnf27a75k9kkxkhj0sj6xv4"; depends=[]; }; + trialr = derive2 { name="trialr"; version="0.0.6"; sha256="0pbfwqmrcbc9d28nvxf15vgp46sh3h2ngg30affvh761bgvxafwx"; depends=[BH dplyr ggplot2 gtools loo magrittr Rcpp RcppEigen rstan rstantools StanHeaders stringr tidyr]; }; triangle = derive2 { name="triangle"; version="0.11"; sha256="0983bvywbyl0sms29j1hby2qy6p984vy4r0q1awh1f8gr01bbk5b"; depends=[]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; tribe = derive2 { name="tribe"; version="0.1.7"; sha256="1k12yzicf3p5wpgzpsv4kk5xzrdfx712z67kj9xmcr1mbs8l5skb"; depends=[bazar dplyr lazyeval magrittr rlist rstudioapi]; }; tricolore = derive2 { name="tricolore"; version="1.2.0"; sha256="0mv72lh5z8drdn96nb39dz9gnzia6vm6vbl8z6ldmd952x727y0a"; depends=[assertthat dplyr ggplot2 ggtern shiny]; }; triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; }; - trifield = derive2 { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; }; trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; trimcluster = derive2 { name="trimcluster"; version="0.1-2.1"; sha256="0013bpyq6mkvjn38qsmwnsxfiwxgwngnqxycxvgpgmiadhm8fjmn"; depends=[]; }; @@ -13075,8 +13122,8 @@ in with self; { tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; - trread = derive2 { name="trread"; version="0.2.5"; sha256="0rygk71qrp9k3hw3fq80q5kf9fwwfpwlgl268ij2x84n399g16p2"; depends=[assertthat dplyr here htmltools httr magrittr readr scales stringr tibble]; }; - trtf = derive2 { name="trtf"; version="0.3-3"; sha256="1jvbh4c1s8nd4yf04i2rmrzx6rw92imdyp41wl40097133x9a0fb"; depends=[Formula libcoin mlt partykit sandwich variables]; }; + trread = derive2 { name="trread"; version="0.2.7"; sha256="158mwnwkmwjvir8caz42jqc599xn9qkqx6bsi76m8l6szf09s0sl"; depends=[assertthat data_table dplyr here hms htmltools httr lubridate magrittr readr rlang scales stringr tibble tidyr zip]; }; + trtf = derive2 { name="trtf"; version="0.3-5"; sha256="173xcf9km9016s020hpcjag5rg738q7lkd0n5ir2r8cyxvfwqgbr"; depends=[Formula libcoin mlt partykit sandwich variables]; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; truncSP = derive2 { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; }; truncdist = derive2 { name="truncdist"; version="1.0-2"; sha256="02ihw4ixhadwr3sqm6r264i8vpcaz8pn69vkzabd8fwqvn5vcj5q"; depends=[evd]; }; @@ -13094,7 +13141,7 @@ in with self; { tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-3"; sha256="0mzqplsj2w4a7jnav43afyk8ymy6p444j7km6kc8c2g4aifpgxcb"; depends=[]; }; tsbox = derive2 { name="tsbox"; version="0.0.3"; sha256="1dcfp0lg6fvhhkspgk9a41crnfq7gx50ll4a4a0qil795349srnj"; depends=[anytime data_table]; }; tsbridge = derive2 { name="tsbridge"; version="1.1"; sha256="0mry3ia54cdfydpzm8asrq1ldj70gnpb5dqzj51w0jiyps2zlw6f"; depends=[mvtnorm tsbugs]; }; - tsbugs = derive2 { name="tsbugs"; version="1.2"; sha256="130v4x6cfy7ddvhijsnvipm4ycrispkj1j0z5f326yb4v5lrk91x"; depends=[]; }; + tsbugs = derive2 { name="tsbugs"; version="1.2.1"; sha256="1dmvj73bw72spcq0g6x83k98bfsqm79av98bb05cgafp9n7yzixw"; depends=[]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; tscount = derive2 { name="tscount"; version="1.4.1"; sha256="0bnzv06wxc1kzjlysljndsjimjsn3g8v6s1vbics1cwcs5jkjwr4"; depends=[ltsa]; }; tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; @@ -13102,12 +13149,13 @@ in with self; { tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.0.4"; sha256="0n5mh951799yd00sbxz0ia2s086kc12rk9xmkdyjvqj8d83vh1ff"; depends=[Cubist earth forecast gbm glmnet kernlab nnet opera pls ranger RcppRoll softImpute xts zoo]; }; tseries = derive2 { name="tseries"; version="0.10-46"; sha256="08kjw0bfj5gfcrxpblwqxwna8a5g9gnr7ya61qb02r263pyhm50j"; depends=[quadprog quantmod zoo]; }; - tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; }; + tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfa = derive2 { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; + tsfeatures = derive2 { name="tsfeatures"; version="1.0.0"; sha256="1ajihzxsa2pdrab4xdjzp34rs906082qycziv0rqzvdx2zhjz68v"; depends=[ForeCA forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; tsfknn = derive2 { name="tsfknn"; version="0.1.0"; sha256="0gzij2fbgwavpsqmr7cp012lhii23fav4nsrbc2w9qingglcnqd1"; depends=[ggplot2]; }; tsgui = derive2 { name="tsgui"; version="0.0.3"; sha256="16cx68gq2f63wx7mhbv0aq6pr71wfbc035kjbjjsfrbagaq4ib13"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; - tsiR = derive2 { name="tsiR"; version="0.4.0"; sha256="1mgiyj25kp8iyll5hfg99iyr8c0wai3hcgglgmfqc96wfgpijfbf"; depends=[ggplot2 kernlab reshape2]; }; + tsiR = derive2 { name="tsiR"; version="0.4.1"; sha256="1l6dvw4j4ish3ya51x5pw1580iibf2ywiyrx17c913sihvww43fr"; depends=[ggplot2 kernlab reshape2]; }; tsibble = derive2 { name="tsibble"; version="0.6.2"; sha256="11ibcx9xfvh6v0lvsx70mb1sq1fk1ydsgy1b3kw6gpydh7yz4rjk"; depends=[anytime dplyr lubridate purrr Rcpp rlang tibble tidyr tidyselect]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsmp = derive2 { name="tsmp"; version="0.3.2"; sha256="1q1rdlx90dwk2p9s7i3246yi192pwysflphfvd20ldc0qm815sml"; depends=[audio doSNOW foreach magrittr progress]; }; @@ -13117,6 +13165,7 @@ in with self; { tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; tstools = derive2 { name="tstools"; version="0.3.8"; sha256="0daxrp91hxc367hlzla0s7x5dddnx462239jcq0ickx6awkk753g"; depends=[data_table jsonlite xts zoo]; }; + tsutils = derive2 { name="tsutils"; version="0.9.0"; sha256="09xv5iv6icjbj5rhcsspbs8n2rl9k9gml0iizq8rd5a01153zlsm"; depends=[forecast MAPA RColorBrewer]; }; tswge = derive2 { name="tswge"; version="1.0.0"; sha256="0wj0kyb1dcwfn8wjp7skgcflc48cr4va0i0jg8x970658if7z6fz"; depends=[astsa MASS PolynomF signal waveslim]; }; tsxtreme = derive2 { name="tsxtreme"; version="0.3.2"; sha256="1lmvwk83186qb59k3i4ppv85dvz7fww8wr97mvkl8457mf4n6kg0"; depends=[evd MASS mvtnorm]; }; ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; }; @@ -13135,7 +13184,7 @@ in with self; { tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; tuneR = derive2 { name="tuneR"; version="1.3.3"; sha256="0av978m4h2iqazyfq6n2cgkh4wpllihh7s29lah2nb8ngc0w5hxx"; depends=[signal]; }; - tuneRanger = derive2 { name="tuneRanger"; version="0.3"; sha256="1hj77fy522lr68h3ypsms96pkrahhn0sp50cggmnf60qdqcgdbjq"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; + tuneRanger = derive2 { name="tuneRanger"; version="0.4"; sha256="0rwhjkm4rzadsjc7zmdpw72i3vkh0fnnds2dvjqknqzkpy213j7x"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2018.1"; sha256="1xjpm2dxn48nflqriplxxbrjxv0spix6v7cp76gyh4kj8ylnbna6"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; }; @@ -13155,12 +13204,11 @@ in with self; { twilio = derive2 { name="twilio"; version="0.1.0"; sha256="0b70vcc2bd5jpd2d82i2k828q90viah0b9abz2r627bbyxivpcnd"; depends=[httr jsonlite lubridate magrittr purrr]; }; twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; - twoStageGwasPower = derive2 { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; }; twosamples = derive2 { name="twosamples"; version="1.0.0"; sha256="0i8k157ph2whll72a590rnafgjx767k8vxy5d8x9dq7s4baiw1cx"; depends=[Rcpp]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; twoway = derive2 { name="twoway"; version="0.6.2"; sha256="0q053jvb2sa762bjnpzkxzdcq1wk82ynp4rjl4j6qncqccvqq0c3"; depends=[]; }; txtplot = derive2 { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; }; - txtq = derive2 { name="txtq"; version="0.1.1"; sha256="1nnwxqxmh820b8ksbqk3g7lnf895684k60k5r1ahh105mqccq2x9"; depends=[base64url filelock fs R6]; }; + txtq = derive2 { name="txtq"; version="0.1.2"; sha256="0ih7s0v5yhmlkdhpji4l8a0hc93mc77y1q0lqx3khxhiqdn66qc4"; depends=[base64url filelock fs R6]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.1.2"; sha256="0nvpmlp8dd250xn3g936wm52s2m6hb82lpvgpdak44ydhhswds0m"; depends=[ChemmineR usethis]; }; uGMAR = derive2 { name="uGMAR"; version="3.0.1"; sha256="19sxzsz21nysxiydcgm0g4sd40jmqvysrxka0j2zcg7yfmg3hr5w"; depends=[Brobdingnag pbapply]; }; @@ -13175,37 +13223,36 @@ in with self; { udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; udpipe = derive2 { name="udpipe"; version="0.8"; sha256="0gdb0azrcf6lc3rgwlmmh2i8mgcmz1f9w9yzh0vcg6pmnhs4z6h7"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; - ufs = derive2 { name="ufs"; version="0.0.1"; sha256="0sp4963ijhn5zgni2kcx1shf59p7dr0pigb368fp8b01077q8qqn"; depends=[]; }; + ufs = derive2 { name="ufs"; version="0.1.0"; sha256="1z853nxq21nfclq7602zsv8hbszqxwzcslb0id2dg9afx1lvgrf0"; depends=[BiasedUrn dplyr ggplot2 ggridges gtable pander scales SuppDists viridis]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.2.1"; sha256="1l96mch9r5npsdv1v4qfyj43ana7a2ff7yj04q6fzhh27v0fx7ak"; depends=[rmarkdown]; }; ukbabynames = derive2 { name="ukbabynames"; version="0.1.1"; sha256="0vrwcf3hixd40ag6kb289anq2ys2k6vdhhsrjbizvndkyn8sr0r0"; depends=[]; }; ukbtools = derive2 { name="ukbtools"; version="0.11.0"; sha256="0ww8knrivykk8zx0mqc0bg9f1m64psdpjcxvdn4alhs88ywc71cf"; depends=[data_table dplyr ggplot2 magrittr plyr purrr readr scales stringr tibble tidyr XML]; }; ukgasapi = derive2 { name="ukgasapi"; version="0.15"; sha256="051bavhsqybg0m1nkv52k9vy5a80aanas146ndx0k9dn2mqmpsw7"; depends=[RCurl XML]; }; umap = derive2 { name="umap"; version="0.2.0.0"; sha256="1qdq3isrv6dqz462sfwk1albbs6h8lcnqidhwr1jxa09bwinhk7q"; depends=[Rcpp reticulate RSpectra]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="2.9.0"; sha256="17flp57xknmskmf1hpllm6v9pxs6kmkrz02ch1qhcr6g5cs1f7l6"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix MuMIn mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; }; + umx = derive2 { name="umx"; version="2.9.9"; sha256="157zbr7vgy85f25z46kpry4k4wxb3vf3am13n9xcnsmk63xim12s"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix MuMIn mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.0"; sha256="0cvbh7a81g52hd2qzp23jwwjd5406iszf4wilgrz8sjfrfgybgfm"; depends=[dplyr rlang]; }; understandBPMN = derive2 { name="understandBPMN"; version="1.1.0"; sha256="11ijxr5nzg6ivx2c9shgba9nfjb8ixypbj8jvhl7zjkwjrpb6f1y"; depends=[devtools dplyr purrr R_utils Rcpp tibble tidyr XML]; }; unfoldr = derive2 { name="unfoldr"; version="0.6.9"; sha256="1zr5k1vcqp16zc9i538fk5gcs900nsl140vx2dpi818jv84md1ij"; depends=[]; }; - ungeneanno = derive2 { name="ungeneanno"; version="0.1.6"; sha256="0fm47vmzn4z73pn37p94r84lbkg5amk0sl78304ibwz0rhlda0y5"; depends=[httr XML]; }; ungroup = derive2 { name="ungroup"; version="1.1.1"; sha256="0jrxxp93ak9bva98j3nmkhrb7znz7lpywk56415k4b2rzpy3j7fs"; depends=[MortalitySmooth pbapply Rcpp RcppEigen Rdpack rgl]; }; - uniCox = derive2 { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.1"; sha256="1zf2pclddswrssil7ikq75449ks3070jxkzy2lmggq9gyipdypps"; depends=[gmp graph]; }; + unifed = derive2 { name="unifed"; version="1.0.1"; sha256="1rxraj89l1ky8iwpa6z7i14hfm5m64bb65pa0kzzm6lawdpc3jhn"; depends=[]; }; uniformly = derive2 { name="uniformly"; version="0.1.0"; sha256="0n3s0x05v4d79jn51nwj06gm074rgy269f57y2q5z0bkwyp6yc7n"; depends=[pgnorm]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; unitedR = derive2 { name="unitedR"; version="0.3.1"; sha256="06plbhjbn1gflpxarn21knhiwfr02vxprak9qcghl30fkkymd02r"; depends=[plyr]; }; - unitizer = derive2 { name="unitizer"; version="1.4.5"; sha256="1ml1x9jvwmh8mg2w2j2g8ffibw6a1ihj0aih11zzf4gjhs0w5p9d"; depends=[crayon diffobj]; }; + unitizer = derive2 { name="unitizer"; version="1.4.6"; sha256="1dpi1zqd8aiwg6vlsgwl0gnhl3n09i72i0g0wg7w4z3syk7sgybi"; depends=[crayon diffobj]; }; units = derive2 { name="units"; version="0.6-2"; sha256="0w7iwp8c66d5gj4rsb8c87vb0ja39hym6fmfnqaqwb3is1snfa2y"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.3-0"; sha256="0haf3s3pc5bhsm6y5njghr9w8ifsjxczm5r7g0ynylwzvd019n8b"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.1-4"; sha256="041cc1jn95zababc4i84c378i204zkn865k2vd7mk1piwm3qkrj5"; depends=[Hmisc robustbase]; }; unix = derive2 { name="unix"; version="1.3"; sha256="1l5w22j0h3qzya13wx7y8lx2baw496vcmn39l2y8r1v38as9dybc"; depends=[]; }; unjoin = derive2 { name="unjoin"; version="0.0.3"; sha256="08vjgl4dnh9kycrvdq5ngf57fy61n0nc582bi4znv06pq696rkwp"; depends=[dplyr rlang tibble]; }; - unmarked = derive2 { name="unmarked"; version="0.12-2"; sha256="1ql8l7kc8py7zand164w3yszqbmwyxvrkjvr10l4hx2mkcnvxzx0"; depends=[lattice plyr raster Rcpp RcppArmadillo reshape]; }; + unmarked = derive2 { name="unmarked"; version="0.12-3"; sha256="0cbi3saga4g39x68xxhvk07wd0qwjx9jih3g5lhz0zidz4fp3g40"; depends=[lattice Matrix plyr raster Rcpp RcppArmadillo reshape2]; }; unpivotr = derive2 { name="unpivotr"; version="0.5.0"; sha256="1w0gc15wy9901nb9l2srqbanpcs5zy7bhrmzlqbqhrpa1rdsbf2f"; depends=[cellranger dplyr forcats magrittr pillar purrr rlang tibble tidyr xml2]; }; unrepx = derive2 { name="unrepx"; version="1.0"; sha256="1dzvwpza60y9p7kz1f0bm20wid5jyxx9pma4w41az9shq5kkr0aj"; depends=[]; }; unrtf = derive2 { name="unrtf"; version="1.3"; sha256="06v6hjpbybv07vqfq23i2s6j0ic035vnm0i4wfqgiw0pw6c85242"; depends=[sys]; }; @@ -13215,14 +13262,14 @@ in with self; { updog = derive2 { name="updog"; version="1.0.1"; sha256="0y2w62f25an1d7fpkiqhimak0ww201r873sjb08akwf82v4k34wz"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo stringr]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; }; - uptasticsearch = derive2 { name="uptasticsearch"; version="0.3.0"; sha256="09g50szxbgc7x2py647lzwmljspks7s6xbbjplbzbpkdc2z4pndh"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; + uptasticsearch = derive2 { name="uptasticsearch"; version="0.3.1"; sha256="0marsngdcpaavkdxdcqv1k2rvivkh4a0kzh977idjc4lm86c9bdl"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; upwaver = derive2 { name="upwaver"; version="1.1.0"; sha256="1hchdh6h021bxw9516500ki7nqk8bprxwrinibl9wzi70xrb9z4i"; depends=[assertthat httr rjson XLConnect]; }; uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; }; urbin = derive2 { name="urbin"; version="0.1-6"; sha256="104qs0k2lqq2ivxfqfpzkl0wd73dnzhgmiif1ciqky89vv051ljs"; depends=[]; }; urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; urlshorteneR = derive2 { name="urlshorteneR"; version="0.9.2"; sha256="1y5n1rn2c7yj5ncxfnsrj9lvaam2j3vvx8ld1vqyjay1r8flzifd"; depends=[httr jsonlite stringr]; }; - urltools = derive2 { name="urltools"; version="1.7.1"; sha256="01h3fwk5mzicy2isvdla9r0zxrxhaf902xx4dg3f16a1l4fgi1a4"; depends=[Rcpp triebeard]; }; + urltools = derive2 { name="urltools"; version="1.7.2"; sha256="18lp66f2l504b8q3j4xy8j9pyzzlljw9f112sn6qii1cg83072wm"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.0-9"; sha256="0nxc8d4v9v5z3wbnj325iq2yrh0mipqgg2rn8pp2jyyq9vb1cxlv"; depends=[]; }; usdm = derive2 { name="usdm"; version="1.1-18"; sha256="1sis47fri2lrbx2ll5ps7bvycjqhncnia800izf11szgayim5lrv"; depends=[raster sp]; }; usedist = derive2 { name="usedist"; version="0.1.0"; sha256="17mldp0888ig2xc8cp1nhldj5g3srwmbx3mfcnzz21n1fz31jkmg"; depends=[]; }; @@ -13234,6 +13281,7 @@ in with self; { usl = derive2 { name="usl"; version="1.8.0"; sha256="04w7p9i08a51smgg11kh4hablic5rjmr5hndrnlg49j5h20i7w1v"; depends=[nlsr]; }; usmap = derive2 { name="usmap"; version="0.4.0"; sha256="1sslvh2wbc52dnc9sy8m312amykcl5bvqhws1lvma5d21jn3scmh"; depends=[]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; + utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.1.4"; sha256="0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"; depends=[]; }; utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.3"; sha256="12g2y9xzzi2sl3ya3va1p7nc7hrjhr4arsz06f8xlxw5n8kvdxag"; depends=[]; }; @@ -13244,7 +13292,8 @@ in with self; { vMask = derive2 { name="vMask"; version="1.0"; sha256="14zfmgidlvlmm9anjcz3wvz4crc24ysq7jj1j1078fp7px5vvr8z"; depends=[]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; vaersvax = derive2 { name="vaersvax"; version="1.0.5"; sha256="0bfbpdjnykvb9r0p28bz8lrqxksy4jvwnd28y6gdlprpisiipiic"; depends=[]; }; - vagalumeR = derive2 { name="vagalumeR"; version="0.1.4"; sha256="0la9mg7s3zhfg4s17f74agcrixy08mb9vwbdjap3r0brwgwzwvpy"; depends=[httr jsonlite magrittr plyr stringr]; }; + vagalumeR = derive2 { name="vagalumeR"; version="0.1.6"; sha256="0zakpg5p9kif61d35as08f2dac3wncyvhpc83rqjp96g99wjf701"; depends=[dplyr httr jsonlite magrittr purrr stringr]; }; + vagam = derive2 { name="vagam"; version="1.0"; sha256="01bij09nzb6lg2rac2yjnbpywvllgk5dnm50a5k3qffp6fhywa80"; depends=[gamm4 Matrix mgcv mvtnorm truncnorm]; }; valaddin = derive2 { name="valaddin"; version="0.1.2"; sha256="0j1c3g9gn2j0manz3jjh58cnl7b1rfwm9494xqrfqpia8948p9vq"; depends=[lazyeval purrr]; }; valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; }; validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; @@ -13254,7 +13303,7 @@ in with self; { validatetools = derive2 { name="validatetools"; version="0.4.3"; sha256="1v6mmk3iq5nzzjkkj1spiqfmqq2133xg2qyy3y8h4pwwfynp4v7c"; depends=[lpSolveAPI validate]; }; valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; - valr = derive2 { name="valr"; version="0.4.2"; sha256="1rvxdg6hz1jl00gb19bwjcs93j7yslp75fyvks7yy0pi2s7m81pq"; depends=[BH bindrcpp broom dplyr ggplot2 plogr Rcpp readr rlang stringr tibble]; }; + valr = derive2 { name="valr"; version="0.5.0"; sha256="14jhrwkiwmha3vlmm7b50n2xxyizj6ddmy89gb20mpzq7qhz1ika"; depends=[broom dplyr ggplot2 Rcpp readr rlang stringr tibble]; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; }; vamc = derive2 { name="vamc"; version="0.1.0"; sha256="1rcyj2zsx33rxmhw7p1i45cm6z6380df0bayxlyizi7vh43ggy6p"; depends=[Rdpack]; }; vanddraabe = derive2 { name="vanddraabe"; version="1.0.0"; sha256="0hnfkwrrk50a5rica3lk2d52qi77xya3aspf13g0zygbyvv7ls72"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; }; @@ -13281,7 +13330,7 @@ in with self; { vcdExtra = derive2 { name="vcdExtra"; version="0.7-1"; sha256="163x9hhvhgdmrqbcig7b120lk63svy0y652scbrcb11f85zrgb0c"; depends=[ca gnm MASS vcd]; }; vcfR = derive2 { name="vcfR"; version="1.8.0"; sha256="1684lamsivwaqzvmwzhrrziwczkaqn3mhbdr86zbjdhr1jcgkz2z"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; - vcr = derive2 { name="vcr"; version="0.2.0"; sha256="1zr94hxch8k8pcgpm43fip8wrlqswb0pjv0py66rpf9nn08nwjvy"; depends=[base64enc crul httr lazyeval R6 urltools webmockr yaml]; }; + vcr = derive2 { name="vcr"; version="0.2.2"; sha256="1844ryah5s6ji55wbfzkirqyav1rg02k1c210py17bfvz15qdnld"; depends=[base64enc crul httr lazyeval R6 urltools webmockr yaml]; }; vcrpart = derive2 { name="vcrpart"; version="1.0-2"; sha256="1xfvsxgyf39d2qxnm40nzkqp7q12y8nbpn9h154n876zxxfs7gh1"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; vctrs = derive2 { name="vctrs"; version="0.1.0"; sha256="13w1r8zpalirpfaz5sykpn0mj4jmhxi2qkdcfq081ixlfjyzwa6c"; depends=[backports digest glue rlang zeallot]; }; vdg = derive2 { name="vdg"; version="1.2.0"; sha256="1hi5d14nh9q784sbdk018awrawh9f1aix0wl26x7n0xb4707rcmy"; depends=[ggplot2 gridExtra proxy quantreg]; }; @@ -13291,19 +13340,20 @@ in with self; { veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.2.1"; sha256="086af6swjpbkd140yvb76affy5gn4p9xm41m3akm8axc3qk0hybg"; depends=[]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.5-3"; sha256="023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c"; depends=[cluster lattice MASS mgcv permute]; }; + vegan = derive2 { name="vegan"; version="2.5-4"; sha256="1q4khii0xbjwmkida0b35q8rmwhg325qizjwz6slkjhz250a85ji"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.1-2"; sha256="01yyhrapdvs6rr5hw1ij4jnpz7mq005s35pn96snpy8ngn6ir386"; depends=[cluster rgl scatterplot3d vegan]; }; - vegclust = derive2 { name="vegclust"; version="1.7.4"; sha256="1fz3p5jpqy99r601dj9fahgv32vw0v54jlrq48wn81rzg2wwfmk7"; depends=[Kendall Rcpp sp vegan]; }; + vegawidget = derive2 { name="vegawidget"; version="0.1.0"; sha256="1i1qxgskdy92jzyab2bgzls7fz5iz83s3bp587hijh9qwpfjx4cv"; depends=[assertthat glue htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; + vegclust = derive2 { name="vegclust"; version="1.7.7"; sha256="0f81jw429ib601lvbzi4q23kb5n6lvavlgw56wfqdmvvkl68vwlc"; depends=[circular Kendall MASS Rcpp sp vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.5"; sha256="145frmlsdb7m5z8qa03js4061pqmgvy3gykxkpiv1wv2wnfzyvnr"; depends=[foreign XML]; }; vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; vegperiod = derive2 { name="vegperiod"; version="0.2.5"; sha256="1icjv3z8bfl2yl1pkr3kbs34q2yqv65aadw40jzrd98djdprzkni"; depends=[]; }; - vegtable = derive2 { name="vegtable"; version="0.1.3"; sha256="1pjbqhc09bmyjxx21z01dysbvwbx7v0mxm9xbcmfxdmr10adhian"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; }; - vein = derive2 { name="vein"; version="0.5.2"; sha256="1iwmh8kd4sa4bby9vycsg6wby63yri3vj310q3kvkd8b7k7z2vlw"; depends=[data_table eixport sf sp units]; }; + vegtable = derive2 { name="vegtable"; version="0.1.4"; sha256="1gk80i4gi98nigiya4n8ng8d2y7l3j63i1ijg4g80nfr5w64qh5w"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; }; + vein = derive2 { name="vein"; version="0.6.0"; sha256="1hss9rjvpw5dir1nz2yw7h87rf14ib95piwj26ihhh9kcgg3fldh"; depends=[data_table eixport sf sp units]; }; velociraptr = derive2 { name="velociraptr"; version="1.0"; sha256="1n7q08i37qbbh5cjq6jb4gmpzzip3wx2wx8xx5wpkln8n3nyiqki"; depends=[RCurl rgdal]; }; velox = derive2 { name="velox"; version="0.2.0"; sha256="1jrarfsfflvpc0dqh5gnw92fk8zic222n7pr7hd0lhr5d389k6d0"; depends=[BH raster Rcpp rgdal rgeos sf sp]; }; vembedr = derive2 { name="vembedr"; version="0.1.3"; sha256="0zg6j0g9l7j36ifwabhxrin5z0dics66bqkc7x6rqijmizk1xpba"; depends=[htmltools httr magrittr stringr]; }; venn = derive2 { name="venn"; version="1.7"; sha256="0lll5bcwx64di4m0k56f00vsfaas2l2mkcbblniq302v0g12v8cj"; depends=[]; }; - vennLasso = derive2 { name="vennLasso"; version="0.1.3"; sha256="1d24gzn72qmylz0m6ghv3ig3hc8z6ghapqs1j9qchxf9gh8lqxbs"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; + vennLasso = derive2 { name="vennLasso"; version="0.1.5"; sha256="05msl15kgscj8dhnvb9ngkqldasgvw4jrfmkbfrfajbw1w3qbqm3"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; @@ -13320,7 +13370,7 @@ in with self; { vinereg = derive2 { name="vinereg"; version="0.5.0"; sha256="17qni21jaizmfzl975xd39ahlc5flfnmy6xy7n9adfv346f3zwp0"; depends=[cctools furrr future kde1d rvinecopulib]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; - vioplot = derive2 { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; + vioplot = derive2 { name="vioplot"; version="0.3.0"; sha256="1ddmmqq7qrnvr5q518afnysrl7ccr8am9njknv3dpwaqzcdr9akn"; depends=[sm zoo]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; vip = derive2 { name="vip"; version="0.1.2"; sha256="1y4v0qd7qag9jw9vazlnl3hp4813lcbhmbq60s3znhdmxnbb4irw"; depends=[ggplot2 gridExtra magrittr ModelMetrics pdp plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; @@ -13332,20 +13382,22 @@ in with self; { visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; visdat = derive2 { name="visdat"; version="0.5.2"; sha256="0l5bkgbib750r0wk4yqih0l3xhrkvz693lzp394nfch1a3b61k3m"; depends=[dplyr ggplot2 magrittr plotly purrr readr rlang tibble tidyr]; }; visreg = derive2 { name="visreg"; version="2.5-0"; sha256="0n19k6rsmpqga6r8lyhjviqs3nw881dhr211621m2cl7knqhhi4y"; depends=[lattice]; }; - vistime = derive2 { name="vistime"; version="0.6.0"; sha256="1ah3zwz2ikzd8y2rbff65mdd9lp4yd328mb2971afr2xdd9gvvqd"; depends=[plotly RColorBrewer]; }; + vistime = derive2 { name="vistime"; version="0.7.0"; sha256="1pz99whgxmj99cryl2hv06g1qdy7s57fq6a3ffzr9h8abnb05r27"; depends=[plotly RColorBrewer]; }; vistributions = derive2 { name="vistributions"; version="0.1.0"; sha256="1kpl11l0yp4rhcx9zcfsdk5n62ir92lwjlyqzirrkkfvqpwkmcay"; depends=[ggplot2 magrittr shiny tibble]; }; visualFields = derive2 { name="visualFields"; version="0.6"; sha256="1w6wkyzjakj6ss9nv4gzkgva4m21jbsz10c2jy660bjb25rf59ih"; depends=[deldir flip gtools Hmisc matrixStats spatstat]; }; visualize = derive2 { name="visualize"; version="4.3.0"; sha256="1s49sx828f25d4n93mn28xdbc81zflk2sr3h8ffs2mkjr888qd8y"; depends=[]; }; - visvow = derive2 { name="visvow"; version="0.3.0"; sha256="1q1i1vnr3zzls3p6rk1c2r89xmxlc11xzkl1r5pbd3ydgppllhna"; depends=[Cairo DT ggdendro ggplot2 ggrepel MASS plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS svglite WriteXLS]; }; + visvow = derive2 { name="visvow"; version="0.4.0"; sha256="1ahck3291js5wlxfccis3ingjpv8wmbjj9ppdy5bv1cgb32yaaxh"; depends=[Cairo DT ggdendro ggplot2 ggrepel MASS plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS svglite WriteXLS]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; + vitae = derive2 { name="vitae"; version="0.1.0"; sha256="1xjrgx0zmy922dg60b296j393lyx2jc07alwzvaj2bgqakpspgk0"; depends=[bookdown dplyr glue knitr RefManageR rlang rmarkdown]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; }; vlad = derive2 { name="vlad"; version="0.2.0"; sha256="0bq91n51f9cnvbqskk0vg6xn559z3a33csbvyhvcvhyjcws2yahp"; depends=[Rcpp RcppArmadillo]; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; vmsbase = derive2 { name="vmsbase"; version="2.2.0"; sha256="1hmgi63qwf7530pxl6w8cv74sjnngf83rb5hx7icjlqr1z6x2hms"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; vocaldia = derive2 { name="vocaldia"; version="0.8.2"; sha256="15314sq2gbi1z47ppvy8y3ljjk12jq4k5a1dfyi56h2lpzrc76ny"; depends=[]; }; - vortexR = derive2 { name="vortexR"; version="1.1.5"; sha256="03bzjyscqf0npvdwm0741n1sg2kbpqlqkpxj843rmac6blkxy7cn"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; - vortexRdata = derive2 { name="vortexRdata"; version="1.0.3"; sha256="1pq910xaqk6d5amg8hj7xagb5wn2ahfrmqairf3vhwqx55lhjbg1"; depends=[]; }; + voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; + vortexR = derive2 { name="vortexR"; version="1.1.6"; sha256="113ndhf2f3hlhmgbg6gh5fq1az6d314fwl872dwypj2zsvfm7x03"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; + vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; vosonSML = derive2 { name="vosonSML"; version="0.23.4"; sha256="0y2jyrkld02ksn2ipkkxzc724dhbqbja120gg7sm67v6x444pma7"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; vote = derive2 { name="vote"; version="1.1-0"; sha256="1kxbv4062g4x9vn4gh74c6zwdshysw5n7vx9qljhq2wrdnqzjpyg"; depends=[formattable knitr]; }; voteogram = derive2 { name="voteogram"; version="0.3.1"; sha256="12xv0c3g4vr23c8adkk8z7m7sx31w5mjvdg9h4qbvaimb99p2r7z"; depends=[dplyr ggplot2 jsonlite scales]; }; @@ -13362,8 +13414,8 @@ in with self; { vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vsgoftest = derive2 { name="vsgoftest"; version="0.3-2"; sha256="020kghcfv8h0i7fzq3p2grhhbwvqmc9ya9r7lc1kiqg1bfgljg91"; depends=[fitdistrplus Rcpp]; }; vstsr = derive2 { name="vstsr"; version="1.0.0"; sha256="0flsw5yw1vmj5x866klxmjqz5aimkvjiwl1zdciz63p9zffmb4gz"; depends=[httr jsonlite magrittr R6 RCurl xml2]; }; - vtreat = derive2 { name="vtreat"; version="1.3.4"; sha256="14vhmam8j431xb06c2yafa8nkc7ia1in43dsx62s4797nxx2sg3y"; depends=[wrapr]; }; - vtree = derive2 { name="vtree"; version="0.1.4"; sha256="1wmvvg7mlbifg3cbjv9qm9rsnl3bs624wm0xnaf489grix92csjb"; depends=[DiagrammeR DiagrammeRsvg rsvg]; }; + vtreat = derive2 { name="vtreat"; version="1.3.5"; sha256="11zfpw0085qgfrrc77ix3qvchy0wmzi8jaadax2wm1khv3ffzpfx"; depends=[wrapr]; }; + vtree = derive2 { name="vtree"; version="1.0.0"; sha256="1bvl3j2xnl59l9hn7cygv2vmjw98w1pzag01w9qwchxqzk56yi7g"; depends=[DiagrammeR DiagrammeRsvg rsvg]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; @@ -13399,16 +13451,17 @@ in with self; { waveband = derive2 { name="waveband"; version="4.7"; sha256="0b57g7jwvqgqjzd7x1pd4nqpx22rmiskvf8wjwrgplqzx4daxny2"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.2"; sha256="0zv4rgazk9s295pggzfa7sc062zv68dgds1ngxcz7vg1fx0qkgxg"; depends=[]; }; wavefunction = derive2 { name="wavefunction"; version="1.0.0"; sha256="1g0g9i0s93lcpcx7icqn15bvkmd79slkgimspvvwp2bxdsc5nnf2"; depends=[]; }; - wavelets = derive2 { name="wavelets"; version="0.3-0"; sha256="141s7z7wxl5plxp7xp7wczswlcvb18a4h3n881l9qc4ny9p7gfpa"; depends=[]; }; + wavelets = derive2 { name="wavelets"; version="0.3-0.1"; sha256="13gaqhc2aqp5vcqa9gb4zilggnhszkz0zyk0whfj0s72yjvxxl27"; depends=[]; }; wavemulcor = derive2 { name="wavemulcor"; version="2.2.1"; sha256="0150ybf8lwxc93zhcrsmh4gp6wbib3s14j95jlg6dlsckixyi3iw"; depends=[waveslim]; }; waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; - waveslim = derive2 { name="waveslim"; version="1.7.5"; sha256="0lqslkihgrd7rbihqhhk57m9vkbnfsznkvk8430cvbcsn7vridii"; depends=[]; }; + waveslim = derive2 { name="waveslim"; version="1.7.5.1"; sha256="0mky0nb4xxp8rybp87mxw2f1q6k400wpxv01zr4injv7ja6028xk"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; wbs = derive2 { name="wbs"; version="1.3"; sha256="1fdf3dj23n63nfnzafq88sxqvi15cbrzsvc8wrljw1raq5z012yv"; depends=[]; }; wbstats = derive2 { name="wbstats"; version="0.2"; sha256="0rfc9c6892jq7y17dwp6vsn62ggnac964xndmxq3mip6k2pk8yi0"; depends=[httr jsonlite tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.0"; sha256="12k68nsrrxglrm9ik53rm8160xvjlsgzi7v4wp78jhmh2slmyxw3"; depends=[mvtnorm Rcpp wmtsa]; }; wdm = derive2 { name="wdm"; version="0.1.1"; sha256="0mr901l2378dyygdhc5agx93lm46a44fs3kr3ax2wnv1cdhmc379"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.4"; sha256="00q9qk8qgz7fjbd9j8pxknrw8lk1ardifg8w4agyrk8r4q56b1a0"; depends=[assertthat binman semver subprocess yaml]; }; + wdpar = derive2 { name="wdpar"; version="0.0.1"; sha256="1w4sbcxmsqxr26alcc9d0xm2q382fd2732dlpks5xpbjzpfb019b"; depends=[assertthat cli countrycode curl httr lwgeom pingr progress rappdirs RSelenium sf sp stringi wdman xml2]; }; weathercan = derive2 { name="weathercan"; version="0.2.8"; sha256="1hspjij4rhlnl3k1hidpa9sclml95q9igwf9dsy0kihlsl0g35h1"; depends=[dplyr httr lubridate purrr rlang stringi tidyr xml2]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; @@ -13417,7 +13470,7 @@ in with self; { webddx = derive2 { name="webddx"; version="0.1.0"; sha256="0w72pp0f77glq460mjagm30y3nd9dmhjkbb0w06ycsjdqvr8qji7"; depends=[jsonlite]; }; webdriver = derive2 { name="webdriver"; version="1.0.5"; sha256="0l3nz7gf62jlkvkn5sfxfvn0prxz3ds7nlpfb1yhnmdljhbzrgzf"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webglobe = derive2 { name="webglobe"; version="1.0.2"; sha256="1277d6fkgrgixlhikfwf0r6z8g5b7mah905xi219qsfycxmifgn9"; depends=[geojsonio httpuv jsonlite]; }; - webmockr = derive2 { name="webmockr"; version="0.2.9"; sha256="01fk50n3fakjz4fdgix14iavcnnsipdyl2w436irkkgmrqv7kd5l"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; }; + webmockr = derive2 { name="webmockr"; version="0.3.0"; sha256="1bxqsvcd5x7s4iygmja1b9j2wa5n2g32wvchd0v77rzxgdhykhpk"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; }; webp = derive2 { name="webp"; version="0.4"; sha256="0jsyjynrsrqpbg93rn48xrjclkvwmz2c2lhcfli5djny122ymh6r"; depends=[]; }; webr = derive2 { name="webr"; version="0.1.0"; sha256="0fjbk933034cgmqd41cw7q5xcvrwgylcic6lxav9jv3b2sspzw06"; depends=[ggplot2 moonBook stringr]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; @@ -13428,7 +13481,7 @@ in with self; { wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; weibullness = derive2 { name="weibullness"; version="1.18.6"; sha256="046fs6b5yb6ckddcb9vplc5478c7xprnafsj4rvzb1gmcpcrqqck"; depends=[]; }; - weibulltools = derive2 { name="weibulltools"; version="0.5.4"; sha256="0xxqcvxd489qhdais7f2xnscz8bfcsl4k1qggl35v65bn7bm7hjw"; depends=[dplyr magrittr plotly Rcpp sandwich segmented SPREDA survival]; }; + weibulltools = derive2 { name="weibulltools"; version="1.0.1"; sha256="06blip2dqaz2f3wnghp8yj0qj23s242k3r7bfcka1n52msc58xjz"; depends=[dplyr LearnBayes magrittr plotly Rcpp RcppArmadillo sandwich segmented SPREDA survival]; }; weightQuant = derive2 { name="weightQuant"; version="1.0"; sha256="1ngz51wr5qpnb98lfbddwvipcra86dq5whm6z8c4xd921anb15bx"; depends=[doParallel foreach quantreg]; }; weightTAPSPACK = derive2 { name="weightTAPSPACK"; version="0.1"; sha256="0kpfw477qka5qrc6sh73had38xbrwrqp1yv0dj2qiihkiyrp67ks"; depends=[HotDeckImputation mice plyr survey]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.1"; sha256="118hzwaarcb8pk2zz83m6zzzndlpbbzb7gz87vc7zggpa998k1gr"; depends=[mvtnorm rootSolve]; }; @@ -13439,7 +13492,7 @@ in with self; { wellknown = derive2 { name="wellknown"; version="0.5.0"; sha256="1y3hi5ajqaxx3s40cx24ayfcd3c6d1ydlhsm0gg2fxgmidm6bhwy"; depends=[jsonlite V8]; }; wesanderson = derive2 { name="wesanderson"; version="0.3.6"; sha256="09mr6p2jmqdjq27cz974w5hyxgn929zp9z3inhxqmmh1582fmdi2"; depends=[]; }; wevid = derive2 { name="wevid"; version="0.5.2"; sha256="0275vf49ryw6ljpibz138xci236bhqvwz59nc33qplqvankfsgcs"; depends=[ggplot2 pROC reshape2 zoo]; }; - wfe = derive2 { name="wfe"; version="1.7"; sha256="058rbg6b8l3sndqlm493z6s4b2ylk0194gqdbbsfamnpygl21x0d"; depends=[arm MASS Matrix]; }; + wfe = derive2 { name="wfe"; version="1.8"; sha256="18fdw0vmddsf2vgsgm8szn6zqvqk29cqr8gi75w0m61x9bachvkh"; depends=[arm MASS Matrix]; }; wfg = derive2 { name="wfg"; version="0.1"; sha256="1r6wb8v42mpapjfhmkmghm9fq21c3s4zmdxy8nlh31nsja71c37d"; depends=[igraph]; }; wfindr = derive2 { name="wfindr"; version="0.1.0"; sha256="0m5xj50hqdjj4lpbgx1kp3my4njr0nz09hd63rf4qf1ls8r7zil9"; depends=[dplyr magrittr]; }; wgaim = derive2 { name="wgaim"; version="1.4-11"; sha256="1jjyp100dcjjczp61xlvhmy48ynniqcys535vzbgswhr7fvijymg"; depends=[lattice qtl]; }; @@ -13449,7 +13502,7 @@ in with self; { whiboclustering = derive2 { name="whiboclustering"; version="0.1.2"; sha256="0bzzr71kbynzj28i8g5li5j40653nyh08ywgs2xww49qxjm3b9lj"; depends=[cluster clusterCrit]; }; whisker = derive2 { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; - whitening = derive2 { name="whitening"; version="1.1.0"; sha256="19p0l2vim9nc1m381v9m3icg238n1xamvwz3v2v00sb1fan9nr9s"; depends=[corpcor]; }; + whitening = derive2 { name="whitening"; version="1.1.1"; sha256="0madrdy2pvr7q4lhznw2kyhs7x927npwmpqwfwkv6v5c4zv7mbjp"; depends=[corpcor]; }; whoami = derive2 { name="whoami"; version="1.2.0"; sha256="1b1zvbvmyh979fq72qa5k83888wpfr44l0qjz0pgdlad1li0nfnc"; depends=[httr jsonlite]; }; whoapi = derive2 { name="whoapi"; version="0.1.2"; sha256="0ib0an08xsxan24q8mb5ai375njmkdc61lh4321rzgr25iqvi682"; depends=[httr]; }; wicket = derive2 { name="wicket"; version="0.4.0"; sha256="1lizzmj69bswzlk18fv2v4yxxc6dynvmkymdiafznzcyyz4a8xnf"; depends=[BH Rcpp]; }; @@ -13478,12 +13531,12 @@ in with self; { wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; wmtsa = derive2 { name="wmtsa"; version="2.0-3"; sha256="1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6"; depends=[ifultools MASS splus2R]; }; - wmwpow = derive2 { name="wmwpow"; version="0.1.0"; sha256="0hvim7b9zn6h6w6m6hgil919nkzkn8676x8b2f3lbmm8m7dwm3lq"; depends=[lamW MASS smoothmest]; }; + wmwpow = derive2 { name="wmwpow"; version="0.1.1"; sha256="1ja3l27yc7c9h39p1pn4x9wr1m1rj8cnn146y5kq1wfq6hi5amb5"; depends=[lamW MASS smoothmest]; }; wnl = derive2 { name="wnl"; version="0.4.1"; sha256="0gr0jf549nmavlzra6b1jg9306chl2l5qivizn5xkkcf8hmq5rm6"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.2.5"; sha256="0pvw36jzx90z7ah4f7cyf95csdn5x7n9rh3ddsppa61y1dmjsn5k"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; - woeR = derive2 { name="woeR"; version="0.1.3"; sha256="15bdhgjq39svzaqzmfykyaq4r543lq15jf0sz8m9bwjv2c6vlx5l"; depends=[dplyr]; }; + woeR = derive2 { name="woeR"; version="0.2.1"; sha256="1k918j19iiri22scg16hb28wymf2nsr8yyz7qfg6mfvnif7im2sm"; depends=[dplyr]; }; womblR = derive2 { name="womblR"; version="1.0.4"; sha256="0yjz4nymhqq6aqvxf0a90bw3hi1zqz1zp3mxbv2ns5v5ygh2a10p"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; wooldridge = derive2 { name="wooldridge"; version="1.3.1"; sha256="0471x3vszf1c4fj9pk5ix8bdmp2bnq1ghnqvwzad9chvvkpzmg3l"; depends=[]; }; word_alignment = derive2 { name="word.alignment"; version="1.0.9"; sha256="02dy4a9agfb99rjbqxy35nf11bpxyjcq15bnyzjkbvcy0ppfgz0l"; depends=[data_table openxlsx quanteda]; }; @@ -13496,28 +13549,27 @@ in with self; { workflowr = derive2 { name="workflowr"; version="1.1.1"; sha256="0qkppim5b6kb5jf0xmgaqpzhyxdcg5qfbmy3vafi5w4yw08q23q2"; depends=[callr getPass git2r glue knitr R_utils rmarkdown rprojroot rstudioapi stringr whisker yaml]; }; worldmet = derive2 { name="worldmet"; version="0.8.4"; sha256="15crnmlcj1yi9rm35n8f34jprms24r2xwx550zz627bdvq4vmam4"; depends=[doParallel dplyr foreach leaflet openair readr zoo]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; - worrms = derive2 { name="worrms"; version="0.3.0"; sha256="130ha9yagsr5gyylhc48dnh1ccbd9nxkap19li2bcq5cwd0c89ak"; depends=[crul data_table jsonlite tibble]; }; + worrms = derive2 { name="worrms"; version="0.3.2"; sha256="1kxzag3gjgadr77pw49x4mn5q9hyh9qkkwiy1wpgg13wk1g3gqgc"; depends=[crul data_table jsonlite tibble]; }; wosr = derive2 { name="wosr"; version="0.3.0"; sha256="0fl9mizrjg3r7n7gslsxgaw3k2v63scqmvnv6341q8sq7018hzln"; depends=[httr jsonlite pbapply xml2]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; - wpp2015 = derive2 { name="wpp2015"; version="1.1-0"; sha256="01vsdma2fgh0vd96ly4f704hl200v0w8ksz60gjxhm44ih3qszh3"; depends=[]; }; + wpp2015 = derive2 { name="wpp2015"; version="1.1-2"; sha256="07bnbmrshlqnlpca5djpq5crnpsmz228wmbpv1ah7ywnjvks6fyx"; depends=[plyr]; }; wpp2017 = derive2 { name="wpp2017"; version="1.2-0"; sha256="0dk56wqs7g54r6jjb6wnppdf9d94474nja21j0bi6by0l8gn6lyc"; depends=[plyr]; }; wppExplorer = derive2 { name="wppExplorer"; version="2.1-1"; sha256="0n0ayn8bxkrabw2iyqv3hfkdchbk9bzv1lhkjpxnjb6z3zl1sggl"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny shinyjs shinythemes wpp2017]; }; wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; - wrangle = derive2 { name="wrangle"; version="0.4"; sha256="0d1xdcvgcv8bn20s90sn1dmzhcdz39yr1m2bkcjbvavm132p96bl"; depends=[dplyr lazyeval magrittr tidyr]; }; - wrapr = derive2 { name="wrapr"; version="1.8.0"; sha256="1z9nb95z4565ibz36j7kadi481kwq3sqk8b36qb7rfq5p783sm57"; depends=[]; }; + wrangle = derive2 { name="wrangle"; version="0.5.1"; sha256="13a1xglbdagzf4jks7ac2xnsqp176jvymdbqycldp2hg0mjvpcjz"; depends=[dplyr lazyeval magrittr rlang tidyr]; }; + wrapr = derive2 { name="wrapr"; version="1.8.3"; sha256="00d4cqd4ld3fsiqad6lam0d3442yjj3s8wk7blsfsq9lgps7772x"; depends=[]; }; wrassp = derive2 { name="wrassp"; version="0.1.8"; sha256="052x0lxpchr6f97yfj3vmhh8gc8qg5pp1m91h5akrav4yfawbs7k"; depends=[]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; writexl = derive2 { name="writexl"; version="1.1"; sha256="0w4wnpl3yhaqp63p32bk60xrbmd7xd11kxifjbzrghi7d4483a46"; depends=[]; }; - wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; - wrspathrowData = derive2 { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.1"; sha256="0jnb818xz841bx2i03k3hhy4hxcwpxblskg9nrc8kgbc22rxx4lz"; depends=[logging Rcpp]; }; wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.2"; sha256="0vzs2lqq48kzk63xz2k9b7qcy0ph5yyvih6z98jfz36kpdfhdps9"; depends=[curl lazyeval]; }; wru = derive2 { name="wru"; version="0.1-7"; sha256="1fvbl5i07f6kdwjhirjla4kc1rrmrm8blvn8aa79s87ljagg0ql9"; depends=[devtools]; }; wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; }; wsrf = derive2 { name="wsrf"; version="1.7.17"; sha256="0gmlvfcy2iqa5sqhwps3hx0hl9fir8nf5xq62f25sn8i3llw752z"; depends=[Rcpp]; }; + wsyn = derive2 { name="wsyn"; version="1.0.0"; sha256="05l3r75nydnmf02j6c6sj4sx85rz6hvlll8pw25j5kzkq1mlgypa"; depends=[fields MASS]; }; wtest = derive2 { name="wtest"; version="3.1"; sha256="1rlas9jn57mcyjic9dhkqj355djldc95q07b076w847cd4pmzqvb"; depends=[]; }; wtss = derive2 { name="wtss"; version="1.1.0"; sha256="019zvmq4z5xy5dwcf4g0z43x2mb14d1lgqhs1zp6821izffpbd0s"; depends=[jsonlite lubridate RCurl roxygen2 zoo]; }; wunderscraper = derive2 { name="wunderscraper"; version="0.1.0"; sha256="1h9nhxvs673n2ivw466qm77k20541cwgmmq35iv3dcb3hvw36p0r"; depends=[httr jsonlite sf tigris]; }; @@ -13531,7 +13583,7 @@ in with self; { xLLiM = derive2 { name="xLLiM"; version="2.1"; sha256="1q6ryw9z5wi0amv5f4drz14p36zy8gc2a0s59q10jixhhyas7ycl"; depends=[abind capushe corpcor igraph MASS Matrix]; }; xROI = derive2 { name="xROI"; version="0.9.11"; sha256="12m1jw3gswnkkqss5v439fhzd8fghclbg0mldvm9hgslv3yhfpdj"; depends=[adimpro colourpicker data_table jpeg lubridate moments plotly raster RCurl rgdal rjson shiny shinyAce shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyTime sp stringr tiff]; }; xRing = derive2 { name="xRing"; version="0.1.0"; sha256="17f1jif8yw2508k86p8mjgw1h20ml5wzaff04ix9xq96plqzi8ma"; depends=[dplR imager tcltk2 tkRplotR]; }; - xSub = derive2 { name="xSub"; version="2.0.1"; sha256="0pharrgncczdq06f6cspv4is595jrbc0zik0jcps2619khs7b1q8"; depends=[countrycode haven RCurl]; }; + xSub = derive2 { name="xSub"; version="2.0.2"; sha256="00mahp8fi6iskjaf5nwka67a7hqb3i08j8yrd4d2av39zfs268h2"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="0.8.1"; sha256="0wr4i37sya5gg6v63ka16g9077gxbhvjqyqfaahhban8skzl2adf"; depends=[SACCR Trading]; }; xaringan = derive2 { name="xaringan"; version="0.8"; sha256="05a2x3a8irvj34zvpbnivwi73i2i6hsh63rw56lj0b4y8d8cqgby"; depends=[htmltools knitr rmarkdown servr xfun]; }; xbreed = derive2 { name="xbreed"; version="1.0.1"; sha256="0grrfra9j0k3mqikmrif5qawh4260ayr40irskzpp9ywsixim63h"; depends=[BGLR]; }; @@ -13540,7 +13592,7 @@ in with self; { xergm_common = derive2 { name="xergm.common"; version="1.7.7"; sha256="0nfls8a1knmnjjrrw0q93qsfrrb9p3yqsm5dxp13z0780vrzxvcj"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.2"; sha256="1y7iilqdj9jv5snzylihs996hvpcj9s3yaiy7wr20m5yh1ngwkvj"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; xfun = derive2 { name="xfun"; version="0.4"; sha256="0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv"; depends=[]; }; - xgboost = derive2 { name="xgboost"; version="0.71.2"; sha256="134q69xbi93ajjlwrp838jgypjdjipmbkzmr31mvc100i9nsr14x"; depends=[data_table magrittr Matrix stringi]; }; + xgboost = derive2 { name="xgboost"; version="0.81.0.1"; sha256="1knpks51z7kz7n70mxpzdk3i8w4j92wxmbxfj1ffm0b8wqrdlyiy"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; @@ -13559,9 +13611,9 @@ in with self; { xoi = derive2 { name="xoi"; version="0.67-4"; sha256="180zzc81d883qzl1xgj88d9aslqmsgdvv8w1mx2613h1rkirkpdp"; depends=[qtl]; }; xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; }; xplain = derive2 { name="xplain"; version="0.2.1"; sha256="01hl9dxiqqxzdixqccga0sywlhv97pi1l51r9sr7v106s7q11jxn"; depends=[RCurl readr XML]; }; - xpose = derive2 { name="xpose"; version="0.4.3"; sha256="1h1wx0pyr2l93pc59ybgg124fs1qhwhhyarafmh4s9b0ps0a451c"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; + xplorerr = derive2 { name="xplorerr"; version="0.1.0"; sha256="08sg15mrcvwkj4jgsxxlln5ddqkh6j948sivd9hv38nvzqnlbhcz"; depends=[shiny]; }; xpose4 = derive2 { name="xpose4"; version="4.6.1"; sha256="1722ai8r94dmy4d2r728iir0hl2b2gmym8xjsqscfc6jw070734i"; depends=[dplyr gam Hmisc lattice lazyeval readr survival]; }; - xptr = derive2 { name="xptr"; version="1.1"; sha256="12yvgbwm311hap3kk24wdx5zz084h0lhkj9k10mjzqp4a6aayi88"; depends=[]; }; + xptr = derive2 { name="xptr"; version="1.1.1"; sha256="1xjmplalf5w7iqkc5dk57g7lvx4jlndg4b2hvqpn05g628bxxdx2"; depends=[]; }; xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; }; xseq = derive2 { name="xseq"; version="0.2.1"; sha256="0bsakbfvkfv39q2ch2g21b17g84470sq4v73355cljlshsi6404i"; depends=[e1071 gptk impute preprocessCore RColorBrewer sfsmisc]; }; xslt = derive2 { name="xslt"; version="1.3"; sha256="0giqzmdby9ax8gwx9b7xqka28k3hgymv4289k8p8dvg26d683p3l"; depends=[Rcpp xml2]; }; @@ -13577,7 +13629,7 @@ in with self; { xxIRT = derive2 { name="xxIRT"; version="2.1.1"; sha256="1y21yc840kq98sy06qcnlnzizv5aya5yllx4mjx9njv7mvcsp1wr"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; xyloplot = derive2 { name="xyloplot"; version="1.6"; sha256="0d1dv3syfjwcp9fil9bl1my19d0kdyz1qrp1yf7ykrk8aq91762v"; depends=[]; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; - yaImpute = derive2 { name="yaImpute"; version="1.0-30"; sha256="0s997gb9ig2if6nc4g89vi1yz6my3z9m7ai3bgjqw836643dmhg9"; depends=[]; }; + yaImpute = derive2 { name="yaImpute"; version="1.0-31"; sha256="0088i9rlpkxb42xp11cr0h2ql9k581qvnz4ppldrnqci8c1qdpff"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.1.1"; sha256="1hxgkyxipk27p74vdkiy8a3wjymhcsc6ad3y9mf15qsl2xim6wwl"; depends=[]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; yaml = derive2 { name="yaml"; version="2.2.0"; sha256="0in562nd0i23cg91a8kdbqgim656fgscykwi0icsnq53xj3srg2m"; depends=[]; }; @@ -13597,7 +13649,7 @@ in with self; { yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.1.2"; sha256="189lbw2i28czkz1w6nbbd2ka3xk0x3kmpb5y4bxmgazwa9wg8mgb"; depends=[MASS NADA truncnorm]; }; zFactor = derive2 { name="zFactor"; version="0.1.7"; sha256="0vsjafg65qydfz0j75rrw40si5v2hwbf09z6d58wzffrwzgrwpvd"; depends=[data_table dplyr ggplot2 rootSolve tibble tidyr]; }; - zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; }; + zTree = derive2 { name="zTree"; version="1.0.6"; sha256="1mywxrx6bw7dzhrdwyxbjzc8ikgvw423zycyji0jjr69cfhpmywv"; depends=[plyr]; }; zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.2"; sha256="0f9fsb4z8s7k5jnz2ayd52dzri0z46kjbm0gi5rfqjlmk13bhgk4"; depends=[foreach ggplot2 iterators plyr reshape2]; }; @@ -13624,10 +13676,10 @@ in with self; { zoocat = derive2 { name="zoocat"; version="0.2.0.1"; sha256="0rdjgf1gvnixqwxrnvzswb53yzcvjgvfkrms6d38bhfyw320kgdp"; depends=[plyr reshape2 scales zoo]; }; zooimage = derive2 { name="zooimage"; version="5.5.2"; sha256="0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"; depends=[digest DT filehash jpeg MASS mda mlearning png shiny svDialogs svMisc tiff]; }; zoom = derive2 { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; }; + zoomgrid = derive2 { name="zoomgrid"; version="1.0.0"; sha256="1bjm2b1ll5ikym21ia7k6gfiw1bcplcn4p6fls2298nf20q63kaa"; depends=[]; }; zoon = derive2 { name="zoon"; version="0.6.3"; sha256="11accyiv9n2zk7fq5bapbmv1ixadab19666i8w41bw642lafgivq"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap SDMTools sp testthat]; }; zscorer = derive2 { name="zscorer"; version="0.2.0"; sha256="03crixz3w1v1ahw2fk5qwmz1il07kywrl1445z09yxymgnpcs7gm"; depends=[tidyr]; }; - zstdr = derive2 { name="zstdr"; version="0.1.1"; sha256="1rigsdh0f68l6vvvxp277cp8hbxj10x4588s6az1njxfpxrc8ajj"; depends=[Rcpp]; }; ztable = derive2 { name="ztable"; version="0.2.0"; sha256="0g7khk5ifsdh9p31wlwh2l5mn1hzxzpv6qcn1wh34vsfjdmijjwy"; depends=[flextable magrittr moonBook officer RColorBrewer scales stringr]; }; ztype = derive2 { name="ztype"; version="0.1.0"; sha256="0brbq2rgkl4mhjbb70kkfv47lzs66k9ppfs2klavcbripirxn5fx"; depends=[assertthat dplyr ggplot2 lubridate magrittr rvest stringr]; }; - zyp = derive2 { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; + zyp = derive2 { name="zyp"; version="0.10-1.1"; sha256="03cxpkfbhrx1fy8l0dl9a13ghz93cqq6877wa8rig09ksdiivaw9"; depends=[Kendall]; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 27b38138f6dc..fea9d8935dca 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -463,9 +463,7 @@ let "BCA" "BEQI2" "betapart" - "betaper" "BiodiversityR" - "BioGeoBEARS" "bio_infer" "bipartite" "biplotbootGUI" @@ -482,7 +480,6 @@ let "DALY" "dave" "Deducer" - "DeducerExtras" "DeducerPlugInExample" "DeducerPlugInScaling" "DeducerSpatial" @@ -546,7 +543,6 @@ let "likeLTD" "logmult" "LS2Wstat" - "MAR1" "MareyMap" "memgene" "MergeGUI" @@ -579,7 +575,6 @@ let "phylotools" "picante" "PKgraph" - "playwith" "plotSEMM" "plsRbeta" "plsRglm" @@ -635,7 +630,6 @@ let "RHRV" "rich" "rioja" - "ripa" "RNCEP" "RQDA" "RSDA" diff --git a/pkgs/development/tools/misc/ccls/default.nix b/pkgs/development/tools/misc/ccls/default.nix index 267cd943edd5..11e02eba5663 100644 --- a/pkgs/development/tools/misc/ccls/default.nix +++ b/pkgs/development/tools/misc/ccls/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "ccls-${version}"; - version = "0.20181225.7"; + version = "0.20181225.8"; src = fetchFromGitHub { owner = "MaskRay"; repo = "ccls"; rev = version; - sha256 = "1qgb2nk4nsgbx4qwymwlzi202daskk536a5l877fsp878jpp61cm"; + sha256 = "05vih8wi2lzp4zqlqd18fs3va6s8p74ws8sx7vwpcc8vcsdzq5w9"; }; nativeBuildInputs = [ cmake makeWrapper ]; diff --git a/pkgs/development/tools/misc/luarocks/darwin.patch b/pkgs/development/tools/misc/luarocks/darwin.patch new file mode 100644 index 000000000000..ec7f924987a2 --- /dev/null +++ b/pkgs/development/tools/misc/luarocks/darwin.patch @@ -0,0 +1,27 @@ +diff --git a/src/luarocks/cfg.lua b/src/luarocks/cfg.lua +index 55cd4c9..060a6f1 100644 +--- a/src/luarocks/cfg.lua ++++ b/src/luarocks/cfg.lua +@@ -587,9 +587,9 @@ if cfg.platforms.macosx then + defaults.external_lib_extension = "dylib" + defaults.arch = "macosx-"..cfg.target_cpu + defaults.variables.LIBFLAG = "-bundle -undefined dynamic_lookup -all_load" +- defaults.variables.STAT = "/usr/bin/stat" ++ defaults.variables.STAT = "stat" + defaults.variables.STATFLAG = "-f '%A'" +- local version = io.popen("sw_vers -productVersion"):read("*l") ++ local version = "10.10" + version = tonumber(version and version:match("^[^.]+%.([^.]+)")) or 3 + if version >= 10 then + version = 8 +@@ -598,8 +598,8 @@ if cfg.platforms.macosx then + else + defaults.gcc_rpath = false + end +- defaults.variables.CC = "env MACOSX_DEPLOYMENT_TARGET=10."..version.." gcc" +- defaults.variables.LD = "env MACOSX_DEPLOYMENT_TARGET=10."..version.." gcc" ++ defaults.variables.CC = "env MACOSX_DEPLOYMENT_TARGET=10."..version.." clang" ++ defaults.variables.LD = "env MACOSX_DEPLOYMENT_TARGET=10."..version.." clang" + defaults.web_browser = "open" + end + diff --git a/pkgs/development/tools/misc/luarocks/default.nix b/pkgs/development/tools/misc/luarocks/default.nix index 8b9bf453c468..ad50e7e8e6df 100644 --- a/pkgs/development/tools/misc/luarocks/default.nix +++ b/pkgs/development/tools/misc/luarocks/default.nix @@ -6,6 +6,7 @@ # some packages need to be compiled with cmake , cmake }: + let s = # Generated upstream information rec { @@ -20,18 +21,20 @@ let lua curl makeWrapper which unzip ]; in + stdenv.mkDerivation { inherit (s) name version; inherit buildInputs; src = fetchurl { inherit (s) url sha256; }; + patches = [ ./darwin.patch ]; preConfigure = '' lua -e "" || { luajit -e "" && { - export LUA_SUFFIX=jit - configureFlags="$configureFlags --lua-suffix=$LUA_SUFFIX" - } + export LUA_SUFFIX=jit + configureFlags="$configureFlags --lua-suffix=$LUA_SUFFIX" + } } lua_inc="$(echo "${lua}/include"/*/)" if test -n "$lua_inc"; then @@ -42,13 +45,12 @@ stdenv.mkDerivation { sed -e "1s@.*@#! ${lua}/bin/lua$LUA_SUFFIX@" -i "$out"/bin/* for i in "$out"/bin/*; do test -L "$i" || { - wrapProgram "$i" \ - --suffix LUA_PATH ";" "$(echo "$out"/share/lua/*/)?.lua" \ - --suffix LUA_PATH ";" "$(echo "$out"/share/lua/*/)?/init.lua" \ - --suffix LUA_CPATH ";" "$(echo "$out"/lib/lua/*/)?.so" \ - --suffix LUA_CPATH ";" "$(echo "$out"/share/lua/*/)?/init.lua" - - } + wrapProgram "$i" \ + --suffix LUA_PATH ";" "$(echo "$out"/share/lua/*/)?.lua" \ + --suffix LUA_PATH ";" "$(echo "$out"/share/lua/*/)?/init.lua" \ + --suffix LUA_CPATH ";" "$(echo "$out"/lib/lua/*/)?.so" \ + --suffix LUA_CPATH ";" "$(echo "$out"/share/lua/*/)?/init.lua" + } done ''; diff --git a/pkgs/development/tools/misc/luarocks/setup-hook.sh b/pkgs/development/tools/misc/luarocks/setup-hook.sh index 593ee8bbe83e..587d5413c3ed 100644 --- a/pkgs/development/tools/misc/luarocks/setup-hook.sh +++ b/pkgs/development/tools/misc/luarocks/setup-hook.sh @@ -6,15 +6,11 @@ _tryRockSpec() { } _trySourceRock() { - if ! [[ "$curSrc" =~ \.src.rock$ ]]; then return 1; fi - export PATH=${unzip}/bin:$PATH - # luarocks expects a clean .rock.spec name to be the package name # so we have to strip the hash renamed="$(stripHash $curSrc)" cp "$curSrc" "$renamed" luarocks unpack --force "$renamed" } - diff --git a/pkgs/development/tools/ocaml/cppo/default.nix b/pkgs/development/tools/ocaml/cppo/default.nix index 0611ec8d3bbd..159260750a25 100644 --- a/pkgs/development/tools/ocaml/cppo/default.nix +++ b/pkgs/development/tools/ocaml/cppo/default.nix @@ -7,8 +7,8 @@ assert stdenv.lib.versionAtLeast ocaml.version "3.12"; let param = if stdenv.lib.versionAtLeast ocaml.version "4.02" then { - version = "1.6.4"; - sha256 = "16mlwck0wngr5pmlr8dxc471zzhhcja3mv4xf4n8jm9nhb3iikvh"; + version = "1.6.5"; + sha256 = "03c0amszy28shinvz61hm340jz446zz5763a1pdqlza36kwcj0p0"; buildInputs = [ dune ]; extra = { inherit (dune) installPhase; diff --git a/pkgs/development/tools/selenium/chromedriver/default.nix b/pkgs/development/tools/selenium/chromedriver/default.nix index 4ba5abc65e30..50aad7a013a9 100644 --- a/pkgs/development/tools/selenium/chromedriver/default.nix +++ b/pkgs/development/tools/selenium/chromedriver/default.nix @@ -6,12 +6,12 @@ let allSpecs = { "x86_64-linux" = { system = "linux64"; - sha256 = "0x45d2fq01w5v28vipvl4g37ld7d9m8rij9dnwq2zcvyz0rfdfmk"; + sha256 = "0iq015nyhdn1z50aj6k2d38cf1vbp59x7qi48aikb4z1h3h1j6a6"; }; "x86_64-darwin" = { system = "mac64"; - sha256 = "1blp4ig5fm6ar8mxm78dc2gvv7n82mq3kqswbyjrcizl91qs4cpx"; + sha256 = "0bf59g7vx7qbz9lx6wgk82zjbf8isag1n3lbi0gw4b2bgv8md8ia"; }; }; @@ -28,7 +28,7 @@ let in stdenv.mkDerivation rec { name = "chromedriver-${version}"; - version = "2.43"; + version = "2.46"; src = fetchurl { url = "https://chromedriver.storage.googleapis.com/${version}/chromedriver_${spec.system}.zip"; diff --git a/pkgs/os-specific/linux/firejail/default.nix b/pkgs/os-specific/linux/firejail/default.nix index 672ee823fe8e..19c4841cf279 100644 --- a/pkgs/os-specific/linux/firejail/default.nix +++ b/pkgs/os-specific/linux/firejail/default.nix @@ -3,11 +3,11 @@ let s = # Generated upstream information rec { baseName="firejail"; - version="0.9.56"; + version="0.9.58"; name="${baseName}-${version}"; - hash="0b9ig0a91i19sfm94a6yl510pm4dlidmani3fsnb7vh0qy3l9121"; - url="https://vorboss.dl.sourceforge.net/project/firejail/firejail/firejail-0.9.56.tar.xz"; - sha256="0b9ig0a91i19sfm94a6yl510pm4dlidmani3fsnb7vh0qy3l9121"; + hash="0yxzcy2nxzkyl759mb9fzmynfkz9spzpb0n29rxn8kalw9ccnvrg"; + url="https://vorboss.dl.sourceforge.net/project/firejail/firejail/firejail-0.9.58.tar.xz"; + sha256="0yxzcy2nxzkyl759mb9fzmynfkz9spzpb0n29rxn8kalw9ccnvrg"; }; buildInputs = [ which diff --git a/pkgs/os-specific/linux/iwd/default.nix b/pkgs/os-specific/linux/iwd/default.nix index acf28a1bca7a..fc7eda0af88c 100644 --- a/pkgs/os-specific/linux/iwd/default.nix +++ b/pkgs/os-specific/linux/iwd/default.nix @@ -3,17 +3,17 @@ let ell = fetchgit { url = https://git.kernel.org/pub/scm/libs/ell/ell.git; - rev = "0.15"; - sha256 = "1jwk5gxcs964ddca9asw6fvc4h9q8d2x1y3linfi11b5vf30bghn"; + rev = "0.17"; + sha256 = "0yk1qmvpy61qp82bb0w55n062jqzlkzbz0b1v5k763j98czz9rvz"; }; in stdenv.mkDerivation rec { name = "iwd-${version}"; - version = "0.12"; + version = "0.14"; src = fetchgit { url = https://git.kernel.org/pub/scm/network/wireless/iwd.git; rev = version; - sha256 = "156zq3zqa2vfmvy3yv9lng23mhrhlgwh0p2x3fcn10nkks9q89pn"; + sha256 = "08ijlnwvj1w354gbv3hdnm3l4iy24qzq4bq5a9z0wynysasw09lv"; }; nativeBuildInputs = [ @@ -32,13 +32,10 @@ in stdenv.mkDerivation rec { python3Packages.pygobject3 ]; - # Enable when it works again - enableParallelBuilding = false; - configureFlags = [ - "--with-dbus-datadir=$(out)/etc/" - "--with-dbus-busdir=$(out)/usr/share/dbus-1/system-services/" - "--with-systemd-unitdir=$(out)/lib/systemd/system/" + "--with-dbus-datadir=${placeholder "out"}/etc/" + "--with-dbus-busdir=${placeholder "out"}/share/dbus-1/system-services/" + "--with-systemd-unitdir=${placeholder "out"}/lib/systemd/system/" "--localstatedir=/var/" "--enable-wired" ]; @@ -60,9 +57,9 @@ in stdenv.mkDerivation rec { ''; postFixup = '' - substituteInPlace $out/usr/share/dbus-1/system-services/net.connman.ead.service \ + substituteInPlace $out/share/dbus-1/system-services/net.connman.ead.service \ --replace /bin/false ${coreutils}/bin/false - substituteInPlace $out/usr/share/dbus-1/system-services/net.connman.iwd.service \ + substituteInPlace $out/share/dbus-1/system-services/net.connman.iwd.service \ --replace /bin/false ${coreutils}/bin/false ''; diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index 78448b4bc389..5f333205dd52 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.14.98"; + version = "4.14.99"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0pqc04ij6qdfhh3rpakas0qc0vqj8mm120z64q9v9vxin5qi20lg"; + sha256 = "02pbi5jck6fp7y5lihn077i0j3hssxcrbsfbxlyp62xjsnp8rycg"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index b88196754a19..200264df22a5 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.19.20"; + version = "4.19.21"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1904zamsxxzm0qbjv9mprxamhs7a3dymxl0yfj777gylv9v2fzfw"; + sha256 = "1hdvk1lz9gi8b6gahqqb1r5zzndfw86qzsg1fji0shgy4vkys26v"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.20.nix b/pkgs/os-specific/linux/kernel/linux-4.20.nix index d3fce3b3ec07..799f36f7dc27 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.20.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.20.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.20.7"; + version = "4.20.8"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0ivdz7kdc69n86rd489dhi4srhr4k3fic5vabf61l3syzqx7s3al"; + sha256 = "0qnh0h7c7ni7j1cgm20sqsfkbri98bckxms494w9ig539b2ac35n"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index 6bc54ef44f6d..334fb6e81b68 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.9.155"; + version = "4.9.156"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "179w0yfnqk0rjdfl3fjqx5b9jn8i0bizhqckv49f63rwwc5wcam5"; + sha256 = "05m82x2zg0nkc6ayk6akgpfhz31zp6dhhlklcfmi419p8fxbkcay"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index fa9b41b928e9..5267f43a5a5c 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -4,8 +4,8 @@ # Update this if linux_latest-libre fails to build. # $ curl https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/ | grep -Eo 'Revision [0-9]+' - rev = "15814"; - sha256 = "10y2nh9sqd5kw1331apq50ikd8585gsja8hbjzyiskl3x5ak5xzh"; + rev = "15951"; + sha256 = "196k8zr5xsfnvbrgh9cvr70yfdl9bngxrc4bh0bq3a4w6nnh1cda"; } , ... }: diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index b1e74da256b6..0cd793db3390 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,13 +1,13 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, libelf, utillinux, ... } @ args: buildLinux (args // rec { - version = "5.0-rc5"; - modDirVersion = "5.0.0-rc5"; + version = "5.0-rc6"; + modDirVersion = "5.0.0-rc6"; extraMeta.branch = "5.0"; src = fetchurl { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; - sha256 = "0a60svgiz06cq4hq5z1rmwyjq1748fm7wi87arl659aidp0r0qky"; + sha256 = "1315hkjwgm97kh98y8ynsf6fy1b6yf4b74ws6d4s7dls70qzl3yw"; }; # Should the testing kernels ever be built on Hydra? diff --git a/pkgs/os-specific/linux/rdma-core/default.nix b/pkgs/os-specific/linux/rdma-core/default.nix index 1316775775ee..ea52fbf08e78 100644 --- a/pkgs/os-specific/linux/rdma-core/default.nix +++ b/pkgs/os-specific/linux/rdma-core/default.nix @@ -3,7 +3,7 @@ } : let - version = "22"; + version = "22.1"; in stdenv.mkDerivation { name = "rdma-core-${version}"; @@ -12,7 +12,7 @@ in stdenv.mkDerivation { owner = "linux-rdma"; repo = "rdma-core"; rev = "v${version}"; - sha256 = "1xkd51bz6p85gahsw18knrvirn404ca98lqmp1assyn4irs7khx8"; + sha256 = "04772rsn5a0gr4yss63fk35zfl05hz2l27q9yva922i8qq38f90a"; }; nativeBuildInputs = [ cmake pkgconfig pandoc ]; diff --git a/pkgs/os-specific/linux/rtl8821ce/default.nix b/pkgs/os-specific/linux/rtl8821ce/default.nix new file mode 100644 index 000000000000..4be462991223 --- /dev/null +++ b/pkgs/os-specific/linux/rtl8821ce/default.nix @@ -0,0 +1,37 @@ +{ stdenv, fetchFromGitHub, kernel, bc }: +stdenv.mkDerivation rec { + name = "rtl8821ce-${kernel.version}-${version}"; + version = "5.2.5_1.26055.20180108"; + + src = fetchFromGitHub { + owner = "tomaspinho"; + repo = "rtl8821ce"; + rev = "ab6154e150bbc7d12b0525d4cc1298ae196e45de"; + sha256 = "1my0hidqnv4s7hi5897m81pq0sjw05np0g27hlkg9fwb83b5kzsg"; + }; + + hardeningDisable = [ "pic" ]; + + nativeBuildInputs = [ bc ]; + buildInputs = kernel.moduleBuildDependencies; + + prePatch = '' + substituteInPlace ./Makefile \ + --replace /lib/modules/ "${kernel.dev}/lib/modules/" \ + --replace '$(shell uname -r)' "${kernel.modDirVersion}" \ + --replace /sbin/depmod \# \ + --replace '$(MODDESTDIR)' "$out/lib/modules/${kernel.modDirVersion}/kernel/net/wireless/" + ''; + + preInstall = '' + mkdir -p "$out/lib/modules/${kernel.modDirVersion}/kernel/net/wireless/" + ''; + + meta = with stdenv.lib; { + description = "Realtek rtl8821ce driver"; + homepage = "https://github.com/tomaspinho/rtl8821ce"; + license = licenses.gpl2; + platforms = platforms.linux; + maintainers = [ maintainers.hhm ]; + }; +} diff --git a/pkgs/servers/computing/slurm/default.nix b/pkgs/servers/computing/slurm/default.nix index c30ee04623db..5ae985ca0488 100644 --- a/pkgs/servers/computing/slurm/default.nix +++ b/pkgs/servers/computing/slurm/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { name = "slurm-${version}"; - version = "18.08.4.1"; + version = "18.08.5.2"; # N.B. We use github release tags instead of https://www.schedmd.com/downloads.php # because the latter does not keep older releases. @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { repo = "slurm"; # The release tags use - instead of . rev = "${builtins.replaceStrings ["."] ["-"] name}"; - sha256 = "1vnlh1fazqa1rhiq5sm3dxgnwf4ipli357686r5w8cgij3m7qj98"; + sha256 = "0x1pdq58sdf0m28cai0lcyzvhhjl7l85gq324pwh8fi3zy2h0n4k"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/servers/dns/pdns-recursor/default.nix b/pkgs/servers/dns/pdns-recursor/default.nix index dae427500698..e8603d249421 100644 --- a/pkgs/servers/dns/pdns-recursor/default.nix +++ b/pkgs/servers/dns/pdns-recursor/default.nix @@ -8,11 +8,11 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "pdns-recursor-${version}"; - version = "4.1.10"; + version = "4.1.11"; src = fetchurl { url = "https://downloads.powerdns.com/releases/pdns-recursor-${version}.tar.bz2"; - sha256 = "00bzh4lmd4z99l9jwmxclnifbqpxlbkzfc88m2ag7yrjmsfw0bgj"; + sha256 = "0w6nyjiid8d9rv6qsq42x210val6lqrm9shpid4s8gjxahmxbiwy"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/dns/powerdns/default.nix b/pkgs/servers/dns/powerdns/default.nix index 7e8775a2e2c6..fff678395319 100644 --- a/pkgs/servers/dns/powerdns/default.nix +++ b/pkgs/servers/dns/powerdns/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "powerdns-${version}"; - version = "4.1.5"; + version = "4.1.6"; src = fetchurl { url = "https://downloads.powerdns.com/releases/pdns-${version}.tar.bz2"; - sha256 = "12jgkdsh6hzaznq6y9y7hfdpjhnn7ar2qn7x706k9iyqcq55faf3"; + sha256 = "0ggpcvzj90a31qf71m8788ql0hbxnkb9y6c3wgqr9l0qwv8dsgpm"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/foundationdb/default.nix b/pkgs/servers/foundationdb/default.nix index 5d8e347de99d..86c1b9065a99 100644 --- a/pkgs/servers/foundationdb/default.nix +++ b/pkgs/servers/foundationdb/default.nix @@ -187,8 +187,8 @@ in with builtins; { }; foundationdb60 = makeFdb rec { - version = "6.0.17"; + version = "6.0.18"; branch = "release-6.0"; - sha256 = "00m6dkv2nm51zhiq049fiivnz8hpc8w21y024lykhn16kyjdnfhs"; + sha256 = "0q1mscailad0z7zf1nypv4g7gx3damfp45nf8nzyq47nsw5gz69p"; }; } diff --git a/pkgs/servers/home-assistant/cli.nix b/pkgs/servers/home-assistant/cli.nix index 90e4b0c736d5..baed66bb4bdb 100644 --- a/pkgs/servers/home-assistant/cli.nix +++ b/pkgs/servers/home-assistant/cli.nix @@ -1,13 +1,12 @@ -# dateparser tests fail on pyton37: https://github.com/NixOS/nixpkgs/issues/52766 -{ lib, python36, glibcLocales }: +{ lib, python3, glibcLocales }: -python36.pkgs.buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "homeassistant-cli"; - version = "0.4.4"; + version = "0.5.0"; - src = python36.pkgs.fetchPypi { + src = python3.pkgs.fetchPypi { inherit pname version; - sha256 = "ad3722062ffb7b4fa730f61991b831dbf083e4e079c560993a023ce4bb11c55d"; + sha256 = "4ad137d336508ab74840a34b3cc488ad884cc75285f5d7842544df1c3adacf8d"; }; postPatch = '' @@ -19,8 +18,8 @@ python36.pkgs.buildPythonApplication rec { glibcLocales ]; - propagatedBuildInputs = with python36.pkgs; [ - requests pyyaml netdisco click click-log tabulate idna jsonpath_rw jinja2 dateparser + propagatedBuildInputs = with python3.pkgs; [ + requests netdisco click click-log tabulate jsonpath_rw jinja2 dateparser regex ruamel_yaml aiohttp ]; LC_ALL = "en_US.UTF-8"; @@ -31,7 +30,7 @@ python36.pkgs.buildPythonApplication rec { $out/bin/hass-cli completion zsh > "$out/share/zsh/site-functions/_hass-cli" ''; - checkInputs = with python36.pkgs; [ + checkInputs = with python3.pkgs; [ pytest requests-mock ]; diff --git a/pkgs/servers/tt-rss/plugin-auth-ldap/default.nix b/pkgs/servers/tt-rss/plugin-auth-ldap/default.nix new file mode 100644 index 000000000000..85d12cf07beb --- /dev/null +++ b/pkgs/servers/tt-rss/plugin-auth-ldap/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchFromGitHub, fetchpatch }: + +stdenv.mkDerivation rec { + name = "tt-rss-plugin-auth-ldap-${version}"; + version = "2.0.0"; + + src = fetchFromGitHub { + owner = "hydrian"; + repo = "TTRSS-Auth-LDAP"; + rev = version; + sha256 = "1mg9jff2m0ajxql1vd1g7hsxfbv9smhrmjg4j2gvvjbii45ry0jh"; + }; + + patches = [ + (fetchpatch { + url = "https://github.com/Mic92/TTRSS-Auth-LDAP/commit/7534fa54babc377a070e05e326a46a252b5e3884.patch"; + sha256 = "1p7zas0n627z0g226dp5m5dg1ai2z3vi69n3xivp517iv3lch70l"; + }) + ]; + + installPhase = '' + install -D plugins/auth_ldap/init.php $out/auth_ldap/init.php + ''; + + meta = with stdenv.lib; { + description = "Plugin for TT-RSS to authenticate users via ldap"; + license = licenses.gpl3; + homepage = https://github.com/hydrian/TTRSS-Auth-LDAP; + maintainers = with maintainers; [ mic92 ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/servers/x11/xorg/default.nix b/pkgs/servers/x11/xorg/default.nix index 2f881d7f8f88..90ebe4fad44b 100644 --- a/pkgs/servers/x11/xorg/default.nix +++ b/pkgs/servers/x11/xorg/default.nix @@ -1704,11 +1704,11 @@ lib.makeScope newScope (self: with self; { }) {}; xf86inputlibinput = callPackage ({ stdenv, pkgconfig, fetchurl, xorgproto, xorgserver }: stdenv.mkDerivation { - name = "xf86-input-libinput-0.28.1"; + name = "xf86-input-libinput-0.28.2"; builder = ./builder.sh; src = fetchurl { - url = mirror://xorg/individual/driver/xf86-input-libinput-0.28.1.tar.bz2; - sha256 = "12yr0yki94j2416bfhmkz5jpacffm27jkra89fl7h03c0y749nls"; + url = mirror://xorg/individual/driver/xf86-input-libinput-0.28.2.tar.bz2; + sha256 = "0818vr0yhk9j1y1wcbxzcd458vrvp06rrhi8k43bhqkb5jb4dcxq"; }; hardeningDisable = [ "bindnow" "relro" ]; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/x11/xorg/tarballs.list b/pkgs/servers/x11/xorg/tarballs.list index 45b3ae9396a2..ec1e6a413b4f 100644 --- a/pkgs/servers/x11/xorg/tarballs.list +++ b/pkgs/servers/x11/xorg/tarballs.list @@ -79,7 +79,7 @@ mirror://xorg/individual/doc/xorg-sgml-doctools-1.11.tar.bz2 mirror://xorg/individual/driver/xf86-input-evdev-2.10.6.tar.bz2 mirror://xorg/individual/driver/xf86-input-joystick-1.6.3.tar.bz2 mirror://xorg/individual/driver/xf86-input-keyboard-1.9.0.tar.bz2 -mirror://xorg/individual/driver/xf86-input-libinput-0.28.1.tar.bz2 +mirror://xorg/individual/driver/xf86-input-libinput-0.28.2.tar.bz2 mirror://xorg/individual/driver/xf86-input-mouse-1.9.3.tar.bz2 mirror://xorg/individual/driver/xf86-input-synaptics-1.9.1.tar.bz2 mirror://xorg/individual/driver/xf86-input-vmmouse-13.1.0.tar.bz2 diff --git a/pkgs/tools/admin/certbot/default.nix b/pkgs/tools/admin/certbot/default.nix index 353abe9c8bca..782af149ed6a 100644 --- a/pkgs/tools/admin/certbot/default.nix +++ b/pkgs/tools/admin/certbot/default.nix @@ -1,34 +1,32 @@ -{ stdenv, pythonPackages, fetchFromGitHub, dialog }: +{ stdenv, python3Packages, fetchFromGitHub, dialog }: -# Latest version of certbot supports python3 and python3 version of pythondialog - -pythonPackages.buildPythonApplication rec { - name = "certbot-${version}"; - version = "0.24.0"; +python3Packages.buildPythonApplication rec { + pname = "certbot"; + version = "0.31.0"; src = fetchFromGitHub { - owner = "certbot"; - repo = "certbot"; + owner = pname; + repo = pname; rev = "v${version}"; - sha256 = "0gsq4si0bqwzd7ywf87y7bbprqg1m72qdj11h64qmwb5zl4vh444"; + sha256 = "0rwjxmkpicyc9a5janvj1lfi430nq6ha94nyfgp11ds9fyydbh1s"; }; - propagatedBuildInputs = with pythonPackages; [ + propagatedBuildInputs = with python3Packages; [ ConfigArgParse acme configobj cryptography + josepy parsedatetime psutil pyRFC3339 pyopenssl - python2-pythondialog pytz six zope_component zope_interface ]; - buildInputs = [ dialog ] ++ (with pythonPackages; [ nose mock gnureadline ]); + buildInputs = [ dialog ] ++ (with python3Packages; [ mock gnureadline ]); patchPhase = '' substituteInPlace certbot/notify.py --replace "/usr/sbin/sendmail" "/run/wrappers/bin/sendmail" diff --git a/pkgs/tools/admin/lego/default.nix b/pkgs/tools/admin/lego/default.nix index e1964b2f1611..b066ab468974 100644 --- a/pkgs/tools/admin/lego/default.nix +++ b/pkgs/tools/admin/lego/default.nix @@ -2,14 +2,14 @@ buildGoPackage rec { name = "lego-${version}"; - version = "2.0.1"; + version = "2.2.0"; rev = "v${version}"; src = fetchFromGitHub { inherit rev; owner = "xenolf"; repo = "lego"; - sha256 = "17q5j2zxc2c0xw8pfhnls67dmwrkicjmd2jdyim3fhi5cgxl9h93"; + sha256 = "1bb4kjkbphay63z83a4z2859qrlrx2h7n3rgia17fhy38xp5zzqp"; }; goPackagePath = "github.com/xenolf/lego"; diff --git a/pkgs/tools/audio/opl3bankeditor/default.nix b/pkgs/tools/audio/opl3bankeditor/default.nix new file mode 100644 index 000000000000..fba85e0f5f00 --- /dev/null +++ b/pkgs/tools/audio/opl3bankeditor/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, cmake, qttools, alsaLib }: + +stdenv.mkDerivation rec { + version = "2019-01-12"; + pname = "OPL3BankEditor"; + + src = fetchFromGitHub { + owner = "Wohlstand"; + repo = pname; + rev = "a254c923df5b385e140de6ae42cf4908af8728d3"; + sha256 = "181zkr2zkv9xy6zijbzqbqf4z6phg98ramzh9hmwi5zcbw68wkqw"; + fetchSubmodules = true; + }; + + buildInputs = [ + alsaLib qttools + ]; + nativeBuildInputs = [ cmake ]; + + meta = with stdenv.lib; { + description = "A small cross-platform editor of the OPL3 FM banks of different formats"; + homepage = src.meta.homepage; + license = licenses.gpl3; + platforms = platforms.linux; + maintainers = with maintainers; [ gnidorah ]; + }; +} diff --git a/pkgs/tools/audio/opl3bankeditor/opn2bankeditor.nix b/pkgs/tools/audio/opl3bankeditor/opn2bankeditor.nix new file mode 100644 index 000000000000..b79dfeb12d80 --- /dev/null +++ b/pkgs/tools/audio/opl3bankeditor/opn2bankeditor.nix @@ -0,0 +1,19 @@ +{ stdenv, opl3bankeditor, fetchFromGitHub, fetchpatch }: + +opl3bankeditor.overrideAttrs (oldAttrs: rec { + version = "1.3-beta"; + pname = "OPN2BankEditor"; + + src = fetchFromGitHub { + owner = "Wohlstand"; + repo = pname; + rev = version; + sha256 = "0blcvqfj1yj6cmm079aw4jdzv3066jxqy9krp268i6cl2b3bmwvw"; + fetchSubmodules = true; + }; + + # to be removed with next release + postInstall = '' + install -Dm755 opn2_bank_editor $out/bin/opn2_bank_editor + ''; +}) diff --git a/pkgs/tools/backup/borg/default.nix b/pkgs/tools/backup/borg/default.nix index 0c93e183f476..d30eaf12f911 100644 --- a/pkgs/tools/backup/borg/default.nix +++ b/pkgs/tools/backup/borg/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "borgbackup"; - version = "1.1.8"; + version = "1.1.9"; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "0b4370480ca0114cb0bb534286241af8a35c6ffb71404dfa409ed06099661b63"; + sha256 = "7d0ff84e64c4be35c43ae2c047bb521a94f15b278c2fe63b43950c4836b42575"; }; nativeBuildInputs = with python3Packages; [ diff --git a/pkgs/tools/backup/rdedup/default.nix b/pkgs/tools/backup/rdedup/default.nix index 10cb1edb62a9..2d18fc5832f6 100644 --- a/pkgs/tools/backup/rdedup/default.nix +++ b/pkgs/tools/backup/rdedup/default.nix @@ -1,21 +1,27 @@ { stdenv, fetchFromGitHub, rustPlatform, pkgconfig, openssl, libsodium -, llvmPackages, clang_39, lzma }: +, llvmPackages, clang_39, lzma +, Security }: rustPlatform.buildRustPackage rec { name = "rdedup-${version}"; - version = "3.0.1"; + version = "3.1.1"; src = fetchFromGitHub { owner = "dpc"; repo = "rdedup"; - rev = "e0f26f379a434f76d238c7a5fa6ddd8ae8b32f19"; - sha256 = "1nhf8ap0w99aa1h0l599cx90lcvfvjaj67nw9flq9bmmzpn53kp9"; + rev = "rdedup-v${version}"; + sha256 = "0y34a3mpghdmcb2rx4z62q0s351bfmy1287d75mm07ryfgglgsd7"; }; - cargoSha256 = "1x6wchlcxb1frww6y04gfx4idxv9h0g9qfxrhgb6g5qy3bqhqq3p"; + cargoSha256 = "0p19qcz2ph6axfccjwc6z72hrlb48l7sf1n0hc1gfq8hj2s3k2s1"; + + patches = [ + ./v3.1.1-fix-Cargo.lock.patch + ]; nativeBuildInputs = [ pkgconfig llvmPackages.libclang clang_39 ]; - buildInputs = [ openssl libsodium lzma ]; + buildInputs = [ openssl libsodium lzma ] + ++ (stdenv.lib.optional stdenv.isDarwin Security); configurePhase = '' export LIBCLANG_PATH="${llvmPackages.libclang}/lib" @@ -27,5 +33,6 @@ rustPlatform.buildRustPackage rec { license = licenses.mpl20; maintainers = with maintainers; [ dywedir ]; platforms = platforms.all; + broken = stdenv.isDarwin; }; } diff --git a/pkgs/tools/backup/rdedup/v3.1.1-fix-Cargo.lock.patch b/pkgs/tools/backup/rdedup/v3.1.1-fix-Cargo.lock.patch new file mode 100644 index 000000000000..7dafc7765b7d --- /dev/null +++ b/pkgs/tools/backup/rdedup/v3.1.1-fix-Cargo.lock.patch @@ -0,0 +1,28 @@ +diff --git a/Cargo.lock b/Cargo.lock +index 96be83a..fe07471 100644 +--- a/Cargo.lock ++++ b/Cargo.lock +@@ -880,12 +880,12 @@ dependencies = [ + + [[package]] + name = "rdedup" +-version = "3.1.0" ++version = "3.1.1" + dependencies = [ + "clap 2.32.0 (registry+https://github.com/rust-lang/crates.io-index)", + "hex 0.3.2 (registry+https://github.com/rust-lang/crates.io-index)", + "log 0.3.9 (registry+https://github.com/rust-lang/crates.io-index)", +- "rdedup-lib 3.0.0", ++ "rdedup-lib 3.1.0", + "rpassword 2.0.0 (registry+https://github.com/rust-lang/crates.io-index)", + "slog 2.3.2 (registry+https://github.com/rust-lang/crates.io-index)", + "slog-async 2.3.0 (registry+https://github.com/rust-lang/crates.io-index)", +@@ -900,7 +900,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" + + [[package]] + name = "rdedup-lib" +-version = "3.0.0" ++version = "3.1.0" + dependencies = [ + "backblaze-b2 0.1.8 (registry+https://github.com/rust-lang/crates.io-index)", + "base64 0.9.2 (registry+https://github.com/rust-lang/crates.io-index)", diff --git a/pkgs/tools/misc/bat/default.nix b/pkgs/tools/misc/bat/default.nix index 4da8527208e6..9fc84504f539 100644 --- a/pkgs/tools/misc/bat/default.nix +++ b/pkgs/tools/misc/bat/default.nix @@ -4,17 +4,17 @@ rustPlatform.buildRustPackage rec { name = "bat-${version}"; - version = "0.9.0"; + version = "0.10.0"; src = fetchFromGitHub { owner = "sharkdp"; repo = "bat"; rev = "v${version}"; - sha256 = "13c88h1m9flmx3x2h7xrnb1wy4vgdxsqahw8cqa0x61ay0019a7s"; + sha256 = "1q22lbyrwh58vhznpjpkiaa8v4qv6a3a8lrxzaypd8wg78p9dca6"; fetchSubmodules = true; }; - cargoSha256 = "1clng4rl7mq50z8d5ipmr9fapjj4qmpf4gmdnfl6vs35pq3wp9j4"; + cargoSha256 = "0npj2rf4vr45gq3qwqq6kqnv9dh58v5lpx0gsmy2qrq44dxb75rq"; nativeBuildInputs = [ cmake pkgconfig zlib ]; diff --git a/pkgs/tools/misc/lf/default.nix b/pkgs/tools/misc/lf/default.nix index cab1d1b5958b..86826f79b9a7 100644 --- a/pkgs/tools/misc/lf/default.nix +++ b/pkgs/tools/misc/lf/default.nix @@ -2,13 +2,13 @@ buildGoPackage rec { name = "lf-${version}"; - version = "9"; + version = "10"; src = fetchFromGitHub { owner = "gokcehan"; repo = "lf"; rev = "r${version}"; - sha256 = "08dwnlgw1dcnd2hl5ma6qqzcyjn9wjp28mjbnidyvc5dmmxc87dq"; + sha256 = "14wddjm6g5smb0s549nd7l2r3fcdd6k5p2cqq94j02n2jhlv0k6h"; }; goPackagePath = "github.com/gokcehan/lf"; diff --git a/pkgs/tools/misc/papis/default.nix b/pkgs/tools/misc/papis/default.nix index 8bccfccfeabf..282d64befb7f 100644 --- a/pkgs/tools/misc/papis/default.nix +++ b/pkgs/tools/misc/papis/default.nix @@ -1,8 +1,8 @@ { lib, fetchFromGitHub, fetchpatch -, python36, xdg_utils +, python3, xdg_utils }: -python36.pkgs.buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "papis"; version = "0.7.5"; @@ -20,7 +20,7 @@ python36.pkgs.buildPythonApplication rec { sha256 = "0cmagfdaaml1pxhnxggifpb47z5g1p231qywnvnqpd3dm93382w1"; }; - propagatedBuildInputs = with python36.pkgs; [ + propagatedBuildInputs = with python3.pkgs; [ click requests filetype pyparsing configparser arxiv2bib pyyaml chardet beautifulsoup4 prompt_toolkit bibtexparser python-slugify pyparser pylibgen @@ -33,7 +33,7 @@ python36.pkgs.buildPythonApplication rec { install -Dt "$out/etc/bash_completion.d" scripts/shell_completion/build/bash/papis ''; - checkInputs = (with python36.pkgs; [ + checkInputs = (with python3.pkgs; [ pytest ]) ++ [ xdg_utils diff --git a/pkgs/tools/misc/snapper/default.nix b/pkgs/tools/misc/snapper/default.nix index 3d1eedab8c47..87fda19a75fe 100644 --- a/pkgs/tools/misc/snapper/default.nix +++ b/pkgs/tools/misc/snapper/default.nix @@ -62,6 +62,6 @@ stdenv.mkDerivation rec { homepage = http://snapper.io; license = licenses.gpl2; platforms = platforms.linux; - maintainers = with maintainers; [ tstrobel ]; + maintainers = with maintainers; [ tstrobel markuskowa ]; }; } diff --git a/pkgs/tools/misc/txr/default.nix b/pkgs/tools/misc/txr/default.nix index c7ff9e18238f..368b0f908c76 100644 --- a/pkgs/tools/misc/txr/default.nix +++ b/pkgs/tools/misc/txr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "txr-${version}"; - version = "208"; + version = "209"; src = fetchurl { url = "http://www.kylheku.com/cgit/txr/snapshot/${name}.tar.bz2"; - sha256 = "091yki3a24pscwd0lg2ymy86r223amjnz9c71z4a2kxz5brhl5my"; + sha256 = "1g236bk5ygh3car4kki3w6n0pwny8q4awg8p86fh2khj52qz6mdl"; }; nativeBuildInputs = [ bison flex ]; diff --git a/pkgs/tools/networking/curl/default.nix b/pkgs/tools/networking/curl/default.nix index bf37678d06c9..b165142d85a4 100644 --- a/pkgs/tools/networking/curl/default.nix +++ b/pkgs/tools/networking/curl/default.nix @@ -24,14 +24,14 @@ assert brotliSupport -> brotli != null; assert gssSupport -> libkrb5 != null; stdenv.mkDerivation rec { - name = "curl-7.63.0"; + name = "curl-7.64.0"; src = fetchurl { urls = [ "https://curl.haxx.se/download/${name}.tar.bz2" "https://github.com/curl/curl/releases/download/${lib.replaceStrings ["."] ["_"] name}/${name}.tar.bz2" ]; - sha256 = "1n4dzlbllwks8xkz466j362da0pbnxgwr11d64504xzzxka7xawv"; + sha256 = "1szj9ia1snbfqzfcsk6hx1j7jhbqsy0f9k5d7x9xiy8w5lfblwym"; }; outputs = [ "bin" "dev" "out" "man" "devdoc" ]; diff --git a/pkgs/tools/networking/flannel/default.nix b/pkgs/tools/networking/flannel/default.nix index e440d35e8210..259225e0b7c8 100644 --- a/pkgs/tools/networking/flannel/default.nix +++ b/pkgs/tools/networking/flannel/default.nix @@ -4,7 +4,7 @@ with lib; buildGoPackage rec { name = "flannel-${version}"; - version = "0.6.2"; + version = "0.11.0"; rev = "v${version}"; goPackagePath = "github.com/coreos/flannel"; @@ -15,14 +15,14 @@ buildGoPackage rec { inherit rev; owner = "coreos"; repo = "flannel"; - sha256 = "03l0zyv9ajda70zw7jgwlmilw26h849jbb9f4slbycphhvbmpvb9"; + sha256 = "0akxlrrsm2w51g0qd7dnsdy0hdajx98sdhxw4iknjr2kn7j3gph9"; }; meta = { description = "Network fabric for containers, designed for Kubernetes"; license = licenses.asl20; homepage = https://github.com/coreos/flannel; - maintainers = with maintainers; [offline]; + maintainers = with maintainers; [johanot offline]; platforms = with platforms; linux; }; } diff --git a/pkgs/tools/nix/nix-script/default.nix b/pkgs/tools/nix/nix-script/default.nix new file mode 100644 index 000000000000..3742d22c0212 --- /dev/null +++ b/pkgs/tools/nix/nix-script/default.nix @@ -0,0 +1,34 @@ +{ stdenv, haskellPackages, fetchFromGitHub }: + +stdenv.mkDerivation rec { + name = "nix-script-${version}"; + version = "2015-09-22"; + + src = fetchFromGitHub { + owner = "bennofs"; + repo = "nix-script"; + rev = "83064dc557b642f6748d4f2372b2c88b2a82c4e7"; + sha256 = "0iwclyd2zz8lv012yghfr4696kdnsq6xvc91wv00jpwk2c09xl7a"; + }; + + buildInputs = [ + (haskellPackages.ghcWithPackages (hs: with hs; [ posix-escape ])) + ]; + + phases = [ "buildPhase" "installPhase" "fixupPhase" ]; + buildPhase = '' + mkdir -p $out/bin + ghc -O2 $src/nix-script.hs -o $out/bin/nix-script -odir . -hidir . + ''; + installPhase = '' + ln -s $out/bin/nix-script $out/bin/nix-scripti + ''; + + meta = with stdenv.lib; { + description = "A shebang for running inside nix-shell."; + homepage = https://github.com/bennofs/nix-script; + license = licenses.bsd3; + maintainers = with maintainers; [ bennofs rnhmjoj ]; + platforms = haskellPackages.ghc.meta.platforms; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 4067d1e8af5c..54836458cc13 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -404,6 +404,13 @@ in actkbd = callPackage ../tools/system/actkbd { }; + adlplug = callPackage ../applications/audio/adlplug { }; + + opnplug = callPackage ../applications/audio/adlplug { + adlplugChip = "-DADLplug_CHIP=OPN2"; + pname = "OPNplug"; + }; + advancecomp = callPackage ../tools/compression/advancecomp {}; aefs = callPackage ../tools/filesystems/aefs { }; @@ -452,7 +459,7 @@ in airsonic = callPackage ../servers/misc/airsonic { }; - airspy = callPackage ../applications/misc/airspy { }; + airspy = callPackage ../applications/radio/airspy { }; airtame = callPackage ../applications/misc/airtame { }; @@ -466,6 +473,8 @@ in inherit (darwin.apple_sdk.frameworks) AppKit CoreFoundation CoreGraphics CoreServices CoreText Foundation OpenGL; }; + aldo = callPackage ../applications/radio/aldo { }; + amazon-ecs-cli = callPackage ../tools/virtualization/amazon-ecs-cli { }; amazon-glacier-cmd-interface = callPackage ../tools/backup/amazon-glacier-cmd-interface { }; @@ -1780,9 +1789,7 @@ in burp = callPackage ../tools/backup/burp { }; - buku = callPackage ../applications/misc/buku { - python3 = python36; # due to #52766 - }; + buku = callPackage ../applications/misc/buku { }; byzanz = callPackage ../applications/video/byzanz {}; @@ -3583,9 +3590,9 @@ in kazam = callPackage ../applications/video/kazam { }; - kalibrate-rtl = callPackage ../tools/misc/kalibrate-rtl { }; + kalibrate-rtl = callPackage ../applications/radio/kalibrate-rtl { }; - kalibrate-hackrf = callPackage ../tools/misc/kalibrate-hackrf { }; + kalibrate-hackrf = callPackage ../applications/radio/kalibrate-hackrf { }; kakoune = callPackage ../applications/editors/kakoune { }; @@ -3990,7 +3997,7 @@ in lidarr = callPackage ../servers/lidarr { }; - limesuite = callPackage ../applications/misc/limesuite { }; + limesuite = callPackage ../applications/radio/limesuite { }; limesurvey = callPackage ../servers/limesurvey { }; @@ -4309,11 +4316,10 @@ in nbd = callPackage ../tools/networking/nbd { }; xnbd = callPackage ../tools/networking/xnbd { }; - inherit (callPackages ../development/libraries/science/math/nccl { }) - nccl_cudatoolkit_8 - nccl_cudatoolkit_9; - - nccl = nccl_cudatoolkit_9; + nccl = callPackage ../development/libraries/science/math/nccl { }; + nccl_cudatoolkit_9_0 = nccl.override { cudatoolkit = cudatoolkit_9_0; }; + nccl_cudatoolkit_9 = nccl.override { cudatoolkit = cudatoolkit_9; }; + nccl_cudatoolkit_10 = nccl.override { cudatoolkit = cudatoolkit_10; }; ndjbdns = callPackage ../tools/networking/ndjbdns { }; @@ -4635,6 +4641,10 @@ in olsrd = callPackage ../tools/networking/olsrd { }; + opl3bankeditor = libsForQt5.callPackage ../tools/audio/opl3bankeditor { }; + + opn2bankeditor = callPackage ../tools/audio/opl3bankeditor/opn2bankeditor.nix { }; + os-prober = callPackage ../tools/misc/os-prober {}; osl = callPackage ../development/compilers/osl { }; @@ -9169,6 +9179,8 @@ in texi2mdoc = callPackage ../tools/misc/texi2mdoc { }; + todoist = callPackage ../applications/misc/todoist { }; + todolist = callPackage ../applications/misc/todolist { }; travis = callPackage ../development/tools/misc/travis { }; @@ -9181,7 +9193,7 @@ in inherit (darwin.apple_sdk.frameworks) CoreFoundation; }; - uhd = callPackage ../development/tools/misc/uhd { }; + uhd = callPackage ../applications/radio/uhd { }; uisp = callPackage ../development/tools/misc/uisp { }; @@ -12390,7 +12402,7 @@ in lvtk = callPackage ../development/libraries/audio/lvtk { }; - qradiolink = callPackage ../applications/misc/qradiolink { }; + qradiolink = callPackage ../applications/radio/qradiolink { }; qrupdate = callPackage ../development/libraries/qrupdate { }; @@ -12549,17 +12561,17 @@ in snappy = callPackage ../development/libraries/snappy { }; - soapyairspy = callPackage ../applications/misc/soapyairspy { }; + soapyairspy = callPackage ../applications/radio/soapyairspy { }; - soapybladerf = callPackage ../applications/misc/soapybladerf { }; + soapybladerf = callPackage ../applications/radio/soapybladerf { }; - soapyhackrf = callPackage ../applications/misc/soapyhackrf { }; + soapyhackrf = callPackage ../applications/radio/soapyhackrf { }; - soapysdr = callPackage ../applications/misc/soapysdr { inherit (python3Packages) python numpy; }; + soapysdr = callPackage ../applications/radio/soapysdr { inherit (python3Packages) python numpy; }; - soapyremote = callPackage ../applications/misc/soapyremote { }; + soapyremote = callPackage ../applications/radio/soapyremote { }; - soapysdr-with-plugins = callPackage ../applications/misc/soapysdr { + soapysdr-with-plugins = callPackage ../applications/radio/soapysdr { inherit (python3Packages) python numpy; extraPackages = [ limesuite @@ -12572,9 +12584,9 @@ in ]; }; - soapyrtlsdr = callPackage ../applications/misc/soapyrtlsdr { }; + soapyrtlsdr = callPackage ../applications/radio/soapyrtlsdr { }; - soapyuhd = callPackage ../applications/misc/soapyuhd { }; + soapyuhd = callPackage ../applications/radio/soapyuhd { }; socket_wrapper = callPackage ../development/libraries/socket_wrapper { }; @@ -13617,6 +13629,8 @@ in mailman = callPackage ../servers/mail/mailman { }; + mailman-rss = callPackage ../development/python-modules/mailman-rss { }; + mattermost = callPackage ../servers/mattermost { }; matterircd = callPackage ../servers/mattermost/matterircd.nix { }; matterbridge = callPackage ../servers/matterbridge { }; @@ -14109,6 +14123,7 @@ in tt-rss = callPackage ../servers/tt-rss { }; tt-rss-plugin-tumblr-gdpr = callPackage ../servers/tt-rss/plugin-tumblr-gdpr { }; + tt-rss-plugin-auth-ldap = callPackage ../servers/tt-rss/plugin-auth-ldap { }; tt-rss-theme-feedly = callPackage ../servers/tt-rss/theme-feedly { }; searx = callPackage ../servers/web-apps/searx { }; @@ -14708,6 +14723,8 @@ in rtl8821au = callPackage ../os-specific/linux/rtl8821au { }; + rtl8821ce = callPackage ../os-specific/linux/rtl8821ce { }; + rtlwifi_new = callPackage ../os-specific/linux/rtlwifi_new { }; openafs = callPackage ../servers/openafs/1.6/module.nix { }; @@ -15576,6 +15593,8 @@ in go-font = callPackage ../data/fonts/go-font { }; + greybird = callPackage ../data/themes/greybird { }; + gyre-fonts = callPackage ../data/fonts/gyre {}; hack-font = callPackage ../data/fonts/hack { }; @@ -15986,6 +16005,8 @@ in zilla-slab = callPackage ../data/fonts/zilla-slab { }; + zuki-themes = callPackage ../data/themes/zuki { }; + ### APPLICATIONS @@ -16366,7 +16387,7 @@ in chatzilla = callPackage ../applications/networking/irc/chatzilla { }; - chirp = callPackage ../applications/misc/chirp { + chirp = callPackage ../applications/radio/chirp { inherit (pythonPackages) pyserial pygtk; }; @@ -16583,7 +16604,7 @@ in inherit (python3Packages) buildPythonApplication requests; }; - dmrconfig = callPackage ../applications/misc/dmrconfig { }; + dmrconfig = callPackage ../applications/radio/dmrconfig { }; dmtx-utils = callPackage (callPackage ../tools/graphics/dmtx-utils) { }; @@ -17010,18 +17031,18 @@ in flexget = callPackage ../applications/networking/flexget { }; - fldigi = callPackage ../applications/audio/fldigi { }; + fldigi = callPackage ../applications/radio/fldigi { }; flink = callPackage ../applications/networking/cluster/flink { }; flink_1_5 = flink.override { version = "1.5"; }; - fllog = callPackage ../applications/misc/fllog { }; + fllog = callPackage ../applications/radio/fllog { }; - flmsg = callPackage ../applications/misc/flmsg { }; + flmsg = callPackage ../applications/radio/flmsg { }; - flrig = callPackage ../applications/misc/flrig { }; + flrig = callPackage ../applications/radio/flrig { }; - flwrap = callPackage ../applications/misc/flwrap { }; + flwrap = callPackage ../applications/radio/flwrap { }; fluidsynth = callPackage ../applications/audio/fluidsynth { inherit (darwin.apple_sdk.frameworks) AudioUnit CoreAudio CoreMIDI CoreServices; @@ -17067,32 +17088,32 @@ in gksu = callPackage ../applications/misc/gksu { }; - gnss-sdr = callPackage ../applications/misc/gnss-sdr { boost=boost166; }; + gnss-sdr = callPackage ../applications/radio/gnss-sdr { boost=boost166; }; - gnuradio = callPackage ../applications/misc/gnuradio { + gnuradio = callPackage ../applications/radio/gnuradio { inherit (python2Packages) cheetah lxml Mako matplotlib numpy python pyopengl pyqt4 scipy wxPython pygtk; inherit (darwin.apple_sdk.frameworks) CoreAudio; fftw = fftwFloat; qwt = qwt6_qt4; }; - gnuradio-with-packages = callPackage ../applications/misc/gnuradio/wrapper.nix { + gnuradio-with-packages = callPackage ../applications/radio/gnuradio/wrapper.nix { inherit (python2Packages) python; extraPackages = [ gnuradio-nacl gnuradio-osmosdr gnuradio-ais gnuradio-rds ] ++ lib.optionals stdenv.isLinux [ gnuradio-gsm gnuradio-limesdr ]; }; - gnuradio-nacl = callPackage ../applications/misc/gnuradio/nacl.nix { }; + gnuradio-nacl = callPackage ../applications/radio/gnuradio/nacl.nix { }; - gnuradio-gsm = callPackage ../applications/misc/gnuradio/gsm.nix { }; + gnuradio-gsm = callPackage ../applications/radio/gnuradio/gsm.nix { }; - gnuradio-ais = callPackage ../applications/misc/gnuradio/ais.nix { }; + gnuradio-ais = callPackage ../applications/radio/gnuradio/ais.nix { }; - gnuradio-limesdr = callPackage ../applications/misc/gnuradio/limesdr.nix { }; + gnuradio-limesdr = callPackage ../applications/radio/gnuradio/limesdr.nix { }; - gnuradio-rds = callPackage ../applications/misc/gnuradio/rds.nix { }; + gnuradio-rds = callPackage ../applications/radio/gnuradio/rds.nix { }; - gnuradio-osmosdr = callPackage ../applications/misc/gnuradio/osmosdr.nix { }; + gnuradio-osmosdr = callPackage ../applications/radio/gnuradio/osmosdr.nix { }; goldendict = libsForQt5.callPackage ../applications/misc/goldendict { }; @@ -17129,7 +17150,7 @@ in gpx = callPackage ../applications/misc/gpx { }; - gqrx = qt5.callPackage ../applications/misc/gqrx { }; + gqrx = qt5.callPackage ../applications/radio/gqrx { }; gpx-viewer = callPackage ../applications/misc/gpx-viewer { }; @@ -17171,7 +17192,7 @@ in wavrsocvt = callPackage ../applications/misc/audio/wavrsocvt { }; - welle-io = libsForQt5.callPackage ../applications/misc/welle-io { }; + welle-io = libsForQt5.callPackage ../applications/radio/welle-io { }; wireshark = callPackage ../applications/networking/sniffers/wireshark { withQt = true; @@ -17214,6 +17235,7 @@ in icecat-unwrapped = firefoxPackages.icecat; firefox = wrapFirefox firefox-unwrapped { }; + firefox-wayland = wrapFirefox firefox-unwrapped { gdkWayland = true; }; firefox-esr-52 = wrapFirefox firefox-esr-52-unwrapped { }; firefox-esr-60 = wrapFirefox firefox-esr-60-unwrapped { }; firefox-esr = firefox-esr-60; @@ -17544,7 +17566,7 @@ in gxplugins-lv2 = callPackage ../applications/audio/gxplugins-lv2 { }; - hackrf = callPackage ../applications/misc/hackrf { }; + hackrf = callPackage ../applications/radio/hackrf { }; hakuneko = callPackage ../tools/misc/hakuneko { }; @@ -17785,7 +17807,7 @@ in poppler = poppler_0_61; }; - inspectrum = libsForQt5.callPackage ../applications/misc/inspectrum { }; + inspectrum = libsForQt5.callPackage ../applications/radio/inspectrum { }; ion3 = callPackage ../applications/window-managers/ion-3 { lua = lua5_1; @@ -18220,7 +18242,7 @@ in minicom = callPackage ../tools/misc/minicom { }; - minimodem = callPackage ../applications/audio/minimodem { }; + minimodem = callPackage ../applications/radio/minimodem { }; minidjvu = callPackage ../applications/graphics/minidjvu { }; @@ -18408,7 +18430,7 @@ in multimarkdown = callPackage ../tools/typesetting/multimarkdown { }; - multimon-ng = callPackage ../applications/misc/multimon-ng { }; + multimon-ng = callPackage ../applications/radio/multimon-ng { }; inherit (callPackages ../applications/networking/mumble { avahi = avahi.override { @@ -18998,7 +19020,7 @@ in qt = qt4; }; - qsstv = qt5.callPackage ../applications/misc/qsstv { }; + qsstv = qt5.callPackage ../applications/radio/qsstv { }; qsyncthingtray = libsForQt5.callPackage ../applications/misc/qsyncthingtray { }; @@ -19123,7 +19145,9 @@ in rdesktop = callPackage ../applications/networking/remote/rdesktop { }; - rdedup = callPackage ../tools/backup/rdedup { }; + rdedup = callPackage ../tools/backup/rdedup { + inherit (darwin.apple_sdk.frameworks) Security; + }; rdup = callPackage ../tools/backup/rdup { }; @@ -19177,9 +19201,9 @@ in }; rrsync = callPackage ../applications/networking/sync/rsync/rrsync.nix {}; - rtl_433 = callPackage ../applications/misc/rtl_433 { }; + rtl_433 = callPackage ../applications/radio/rtl_433 { }; - rtl-sdr = callPackage ../applications/misc/rtl-sdr { }; + rtl-sdr = callPackage ../applications/radio/rtl-sdr { }; rtv = callPackage ../applications/misc/rtv { }; @@ -19678,6 +19702,8 @@ in tla = callPackage ../applications/version-management/arch { }; + tlf = callPackage ../applications/radio/tlf { }; + tlp = callPackage ../tools/misc/tlp { inherit (linuxPackages) x86_energy_perf_policy; }; @@ -19773,7 +19799,7 @@ in unpaper = callPackage ../tools/graphics/unpaper { }; - urh = callPackage ../applications/misc/urh { }; + urh = callPackage ../applications/radio/urh { }; uuagc = haskell.lib.justStaticExecutables haskellPackages.uuagc; @@ -20153,7 +20179,7 @@ in ); }; - wsjtx = qt5.callPackage ../applications/misc/wsjtx { }; + wsjtx = qt5.callPackage ../applications/radio/wsjtx { }; wtftw = callPackage ../applications/window-managers/wtftw {}; @@ -22432,8 +22458,6 @@ in binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; }; - greybird = callPackage ../misc/themes/greybird { }; - guetzli = callPackage ../applications/graphics/guetzli { }; gummi = callPackage ../applications/misc/gummi { }; @@ -22690,6 +22714,8 @@ in nix-update-source = callPackage ../tools/package-management/nix-update-source {}; + nix-script = callPackage ../tools/nix/nix-script {}; + nix-template-rpm = callPackage ../build-support/templaterpm { inherit (pythonPackages) python toposort; }; nix-top = callPackage ../tools/package-management/nix-top { }; @@ -23000,7 +23026,7 @@ in unicode-paracode = callPackage ../tools/misc/unicode { }; - unixcw = callPackage ../applications/misc/unixcw { }; + unixcw = callPackage ../applications/radio/unixcw { }; vault = callPackage ../tools/security/vault { }; @@ -23115,7 +23141,7 @@ in xlayoutdisplay = callPackage ../tools/X11/xlayoutdisplay { }; - xlog = callPackage ../applications/misc/xlog { }; + xlog = callPackage ../applications/radio/xlog { }; xmagnify = callPackage ../tools/X11/xmagnify { }; @@ -23250,8 +23276,6 @@ in zk-shell = callPackage ../applications/misc/zk-shell { }; - zuki-themes = callPackage ../misc/themes/zuki { }; - tora = libsForQt5.callPackage ../development/tools/tora {}; xulrunner = firefox-unwrapped; diff --git a/pkgs/top-level/lua-packages.nix b/pkgs/top-level/lua-packages.nix index de68c139dc28..7a1738b0f3ee 100644 --- a/pkgs/top-level/lua-packages.nix +++ b/pkgs/top-level/lua-packages.nix @@ -100,32 +100,6 @@ with self; { luarocks-nix = callPackage ../development/tools/misc/luarocks/luarocks-nix.nix { }; - basexx = buildLuaPackage rec { - version = "0.4.0"; - name = "basexx-${version}"; - - src = fetchFromGitHub { - owner = "aiq"; - repo = "basexx"; - rev = "v${version}"; - sha256 = "12y0ng9bp5b98iax35pnp0kc0mb42spv1cbywvfq6amik6l0ya7g"; - }; - - buildPhase = ":"; - installPhase = '' - install -Dt "$out/lib/lua/${lua.luaversion}/" \ - lib/basexx.lua - ''; - - meta = with stdenv.lib; { - description = "Lua library for base2, base16, base32, base64, base85"; - homepage = "https://github.com/aiq/basexx"; - license = licenses.mit; - maintainers = with maintainers; [ vcunat ]; - platforms = platforms.all; - }; - }; - bit32 = buildLuaPackage rec { version = "5.3.0"; name = "bit32-${version}"; @@ -193,55 +167,6 @@ with self; { }; }; - cqueues = buildLuaPackage rec { - name = "cqueues-${version}"; - version = "20171014"; - - src = fetchurl { - url = "https://www.25thandclement.com/~william/projects/releases/${name}.tgz"; - sha256 = "1dabhpn6r0hlln8vx9hxm34pfcm46qzgpb2apmziwg5z51fi4ksb"; - }; - - preConfigure = ''export prefix=$out''; - - nativeBuildInputs = [ gnum4 ]; - buildInputs = [ openssl ]; - - meta = with stdenv.lib; { - description = "A type of event loop for Lua"; - homepage = "https://www.25thandclement.com/~william/projects/cqueues.html"; - license = licenses.mit; - maintainers = with maintainers; [ vcunat ]; - platforms = platforms.unix; - }; - }; - - fifo = buildLuaPackage rec { - version = "0.2"; - name = "fifo-${version}"; - - src = fetchFromGitHub { - owner = "daurnimator"; - repo = "fifo.lua"; - rev = version; - sha256 = "1800k7h5hxsvm05bjdr65djjml678lwb0661cll78z1ys2037nzn"; - }; - - buildPhase = ":"; - installPhase = '' - mkdir -p "$out/lib/lua/${lua.luaversion}" - mv fifo.lua "$out/lib/lua/${lua.luaversion}/" - ''; - - meta = with stdenv.lib; { - description = "A lua library/'class' that implements a FIFO"; - homepage = "https://github.com/daurnimator/fifo.lua"; - license = licenses.mit; - maintainers = with maintainers; [ vcunat ]; - platforms = platforms.all; - }; - }; - luabitop = buildLuaPackage rec { version = "1.0.2"; name = "bitop-${version}"; @@ -915,32 +840,6 @@ with self; { }; }; - lpeg_patterns = buildLuaPackage rec { - version = "0.5"; - name = "lpeg_patterns-${version}"; - - src = fetchFromGitHub { - owner = "daurnimator"; - repo = "lpeg_patterns"; - rev = "v${version}"; - sha256 = "1s3c179a64r45ffkawv9dnxw4mzwkzj00nr9z2gs5haajgpjivw6"; - }; - - buildPhase = ":"; - installPhase = '' - mkdir -p "$out/lib/lua/${lua.luaversion}" - mv lpeg_patterns "$out/lib/lua/${lua.luaversion}/" - ''; - - meta = with stdenv.lib; { - description = "A collection of LPEG patterns"; - homepage = "https://github.com/daurnimator/lpeg_patterns"; - license = licenses.mit; - maintainers = with maintainers; [ vcunat ]; - inherit (lpeg.meta) platforms; - }; - }; - cjson = buildLuaPackage rec { name = "cjson-${version}"; version = "2.1.0"; @@ -972,43 +871,6 @@ with self; { }; }; - lgi = toLuaModule(stdenv.mkDerivation rec { - name = "lgi-${version}"; - version = "0.9.2"; - - src = fetchFromGitHub { - owner = "pavouk"; - repo = "lgi"; - rev = version; - sha256 = "03rbydnj411xpjvwsyvhwy4plm96481d7jax544mvk7apd8sd5jj"; - }; - - nativeBuildInputs = [ pkgconfig ]; - buildInputs = [ glib gobject-introspection lua ]; - - makeFlags = [ "LUA_VERSION=${lua.luaversion}" ]; - - preBuild = '' - sed -i "s|/usr/local|$out|" lgi/Makefile - ''; - - patches = [ - (fetchpatch { - name = "lgi-find-cairo-through-typelib.patch"; - url = "https://github.com/psychon/lgi/commit/46a163d9925e7877faf8a4f73996a20d7cf9202a.patch"; - sha256 = "0gfvvbri9kyzhvq3bvdbj2l6mwvlz040dk4mrd5m9gz79f7w109c"; - }) - ]; - - meta = with stdenv.lib; { - description = "GObject-introspection based dynamic Lua binding to GObject based libraries"; - homepage = https://github.com/pavouk/lgi; - license = licenses.mit; - maintainers = with maintainers; [ lovek323 rasendubi ]; - platforms = platforms.unix; - }; - }); - mpack = buildLuaPackage rec { name = "mpack-${version}"; version = "1.0.7"; diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index 24ff673b8fa1..46c45d1d8d8a 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -3266,6 +3266,19 @@ let }; }; + DataIEEE754 = buildPerlPackage { + name = "Data-IEEE754-0.02"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/Data-IEEE754-0.02.tar.gz; + sha256 = "07b73dlxd0qmxgkkrpa2xr61y18v3adlf1qgnl9k90kj8q9spx66"; + }; + buildInputs = [ TestBits ]; + meta = { + description = "Pack and unpack big-endian IEEE754 floats and doubles"; + license = with stdenv.lib.licenses; [ artistic2 ]; + }; + }; + DataInteger = buildPerlModule rec { name = "Data-Integer-0.006"; src = fetchurl { @@ -3334,6 +3347,19 @@ let }; }; + DataPrinter = buildPerlPackage { + name = "Data-Printer-0.40"; + src = fetchurl { + url = mirror://cpan/authors/id/G/GA/GARU/Data-Printer-0.40.tar.gz; + sha256 = "0njjh8zp5afc4602jrnmg89icj7gfsil6i955ypcqxc2gl830sb0"; + }; + propagatedBuildInputs = [ ClonePP FileHomeDir PackageStash SortNaturally ]; + meta = { + description = "colored pretty-print of Perl data structures and objects"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + DataSection = buildPerlPackage rec { name = "Data-Section-0.200007"; src = fetchurl { @@ -3912,6 +3938,19 @@ let }; }; + DevelRefcount = buildPerlModule { + name = "Devel-Refcount-0.10"; + src = fetchurl { + url = mirror://cpan/authors/id/P/PE/PEVANS/Devel-Refcount-0.10.tar.gz; + sha256 = "0jnaraqkigyinhwz4nqk1ndq7ssjizr98nd1dd183a6icdlx8m5n"; + }; + buildInputs = [ TestFatal ]; + meta = { + description = "obtain the REFCNT value of a referent"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + DevelPPPort = buildPerlPackage rec { name = "Devel-PPPort-3.43"; src = fetchurl { @@ -6215,6 +6254,20 @@ let doCheck = false; # seems to access the network }; + GeoIP2 = buildPerlPackage { + name = "GeoIP2-2.006001"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/GeoIP2-2.006001.tar.gz; + sha256 = "05pb8bj2dkfcn8z56f8dcs76x65xcn05fywm7vifmfh39qgkmm62"; + }; + propagatedBuildInputs = [ JSONMaybeXS LWPProtocolHttps MaxMindDBReader ParamsValidate Throwable ]; + buildInputs = [ PathClass TestFatal TestNumberDelta ]; + meta = { + description = "Perl API for MaxMind's GeoIP2 web services and databases"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + GetoptArgvFile = buildPerlPackage rec { name = "Getopt-ArgvFile-1.11"; src = fetchurl { @@ -9090,6 +9143,31 @@ let propagatedBuildInputs = [ ClassAccessor ParamsValidate ]; }; + MathInt128 = buildPerlPackage { + name = "Math-Int128-0.22"; + src = fetchurl { + url = mirror://cpan/authors/id/S/SA/SALVA/Math-Int128-0.22.tar.gz; + sha256 = "1g0ra7ldv4fz3kqqg45dlrfavi2abfmlhf0py5ank1jk2x0clc56"; + }; + propagatedBuildInputs = [ MathInt64 ]; + meta = { + description = "Manipulate 128 bits integers in Perl"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + + MathInt64 = buildPerlPackage { + name = "Math-Int64-0.54"; + src = fetchurl { + url = mirror://cpan/authors/id/S/SA/SALVA/Math-Int64-0.54.tar.gz; + sha256 = "0lfkc0cry65lnsi28gjyz2kvdkanbhhpc0pyrswsczj3k3k53z6w"; + }; + meta = { + description = "Manipulate 64 bits integers in Perl"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + MathPlanePath = buildPerlPackage rec { name = "Math-PlanePath-126"; src = fetchurl { @@ -9156,6 +9234,62 @@ let }; }; + MaxMindDBCommon = buildPerlPackage { + name = "MaxMind-DB-Common-0.040001"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/MaxMind-DB-Common-0.040001.tar.gz; + sha256 = "1mqvnabskhyvi2f10f602gisfk39ws51ky55lixd0033sd5xzikb"; + }; + propagatedBuildInputs = [ DataDumperConcise DateTime ListAllUtils MooXStrictConstructor ]; + meta = { + description = "Code shared by the MaxMind DB reader and writer modules"; + license = with stdenv.lib.licenses; [ artistic2 ]; + }; + }; + + MaxMindDBReader = buildPerlPackage { + name = "MaxMind-DB-Reader-1.000013"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/MaxMind-DB-Reader-1.000013.tar.gz; + sha256 = "0w7dmfhpibazrh75bdr7vmpji83fzldsy0zjvhg3cwadr4f35kmq"; + }; + propagatedBuildInputs = [ DataIEEE754 DataPrinter DataValidateIP MaxMindDBCommon ]; + buildInputs = [ PathClass TestBits TestFatal TestNumberDelta TestRequires ]; + meta = { + description = "Read MaxMind DB files and look up IP addresses"; + license = with stdenv.lib.licenses; [ artistic2 ]; + }; + }; + + MaxMindDBReaderXS = buildPerlModule { + name = "MaxMind-DB-Reader-XS-1.000007"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/MaxMind-DB-Reader-XS-1.000007.tar.gz; + sha256 = "1wg1x1pqamapfhn6rbffqipncgs15k99q34agdamv76i6782ny8r"; + }; + propagatedBuildInputs = [ MathInt128 MaxMindDBReader pkgs.libmaxminddb ]; + buildInputs = [ NetWorks PathClass TestFatal TestNumberDelta TestRequires ]; + meta = { + description = "Fast XS implementation of MaxMind DB reader"; + license = with stdenv.lib.licenses; [ artistic2 ]; + }; + }; + + MaxMindDBWriter = buildPerlModule { + name = "MaxMind-DB-Writer-0.300003"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/MaxMind-DB-Writer-0.300003.tar.gz; + sha256 = "0gpbrlmxjl45k0wg5v9ghw415hd0fns9fk8ncxzlfyjzjsxgalxs"; + }; + propagatedBuildInputs = [ DigestSHA1 MaxMindDBReader MooseXParamsValidate MooseXStrictConstructor NetWorks SerealDecoder SerealEncoder ]; + buildInputs = [ DevelRefcount JSON TestBits TestDeep TestFatal TestHexDifferences TestRequires TestWarnings ]; + hardeningDisable = [ "format" ]; + meta = { + description = "Create MaxMind DB database files"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + Memoize = buildPerlPackage { name = "Memoize-1.03"; src = fetchurl { @@ -11240,6 +11374,20 @@ let }; }; + NetWorks = buildPerlPackage { + name = "Net-Works-0.22"; + src = fetchurl { + url = mirror://cpan/authors/id/M/MA/MAXMIND/Net-Works-0.22.tar.gz; + sha256 = "1zz91vn1kdxljnlwllf4dzdsm4v6pja5694vf8l4w66azcyv5j8a"; + }; + propagatedBuildInputs = [ ListAllUtils MathInt128 Moo namespaceautoclean ]; + buildInputs = [ TestFatal ]; + meta = { + description = "Sane APIs for IP addresses and networks"; + license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ]; + }; + }; + NumberBytesHuman = buildPerlPackage rec { name = "Number-Bytes-Human-0.11"; src = fetchurl { @@ -14567,6 +14715,20 @@ let buildInputs = [ AlgorithmDiff TextDiff ]; }; + TestBits = buildPerlPackage { + name = "Test-Bits-0.02"; + src = fetchurl { + url = mirror://cpan/authors/id/D/DR/DROLSKY/Test-Bits-0.02.tar.gz; + sha256 = "1hqbvqlkj3k9ys4zq3f1fl1y6crni8r0ynan673f49rs91b6z0m9"; + }; + propagatedBuildInputs = [ ListAllUtils ]; + buildInputs = [ TestFatal ]; + meta = { + description = "Provides a bits_is() subroutine for testing binary data"; + license = with stdenv.lib.licenses; [ artistic2 ]; + }; + }; + TestCheckDeps = buildPerlPackage rec { name = "Test-CheckDeps-0.010"; src = fetchurl { diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index e9eaed13f791..33b9645a8a12 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -574,6 +574,8 @@ in { pyaxmlparser = callPackage ../development/python-modules/pyaxmlparser { }; + pybind11 = callPackage ../development/python-modules/pybind11 { }; + pycairo = callPackage ../development/python-modules/pycairo { inherit (pkgs) pkgconfig; }; @@ -2260,10 +2262,6 @@ in { gdal = self.gdal; }; - django_2_0 = callPackage ../development/python-modules/django/2_0.nix { - gdal = self.gdal; - }; - django_2_1 = callPackage ../development/python-modules/django/2_1.nix { gdal = self.gdal; }; @@ -3125,6 +3123,8 @@ in { mockito = callPackage ../development/python-modules/mockito { }; + moderngl = callPackage ../development/python-modules/moderngl { }; + modestmaps = callPackage ../development/python-modules/modestmaps { }; # Needed here because moinmoin is loaded as a Python library.