Merge staging-next into staging

2024-07-19 18:01:40 +00:00 · 2024-07-19 18:01:40 +00:00 · 637b531dcf
commit 637b531dcf
parent a6c20a7387 c578584fd7
63 changed files with 1360 additions and 1290 deletions
--- a/nixos/modules/programs/ssh.nix
+++ b/nixos/modules/programs/ssh.nix
@ -293,9 +293,9 @@ in

        # Generated options from other settings
        Host *
-        AddressFamily ${if config.networking.enableIPv6 then "any" else "inet"}
        GlobalKnownHostsFile ${builtins.concatStringsSep " " knownHostsFiles}

+        ${lib.optionalString (!config.networking.enableIPv6) "AddressFamily inet"}
        ${lib.optionalString cfg.setXAuthLocation "XAuthLocation ${pkgs.xorg.xauth}/bin/xauth"}
        ${lib.optionalString (cfg.forwardX11 != null) "ForwardX11 ${if cfg.forwardX11 then "yes" else "no"}"}

--- a/nixos/modules/services/mail/mailman.nix
+++ b/nixos/modules/services/mail/mailman.nix
@ -445,6 +445,7 @@ in {
          "${removeSuffix "/" cfg.serve.virtualRoot}/static/".alias = webSettings.STATIC_ROOT + "/";
        };
      });
+      proxyTimeout = mkDefault "120s";
    };

    environment.systemPackages = [ (pkgs.buildEnv {
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages.nix
@ -69,8 +69,6 @@ in

  ott-mode = callPackage ./manual-packages/ott-mode { };

-  perl-completion = callPackage ./manual-packages/perl-completion { };
-
  pod-mode = callPackage ./manual-packages/pod-mode { };

  prisma-mode = callPackage ./manual-packages/prisma-mode { };
@ -120,4 +118,5 @@ in
  ess-R-object-popup = throw "emacsPackages.ess-R-object-popup was deleted, since the upstream repo looks abandoned."; # Added 2024-07-15
  ghc-mod = throw "emacsPackages.ghc-mod was deleted because it is deprecated, use haskell-language-server instead."; # Added 2024-07-17
  haskell-unicode-input-method = throw "emacsPackages.haskell-unicode-input-method is contained in emacsPackages.haskell-mode, please use that instead."; # Added 2024-07-17
+  perl-completion = throw "emacsPackages.perl-completion was removed, since it is broken."; # Added 2024-07-19
 }
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/control-lock/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/control-lock/default.nix
@ -1,18 +1,22 @@
-{ lib, trivialBuild, fetchurl }:
+{
+  lib,
+  fetchurl,
+  melpaBuild,
+}:

-trivialBuild {
+melpaBuild {
  pname = "control-lock";
+  version = "1.1.2";

  src = fetchurl {
    url = "https://raw.githubusercontent.com/emacsmirror/emacswiki.org/185fdc34fb1e02b43759ad933d3ee5646b0e78f8/control-lock.el";
    hash = "sha256-JCrmS3FSGDHSR+eAR0X/uO0nAgd3TUmFxwEVH5+KV+4=";
  };

-  version = "1.1.2";
-
  meta = {
-    description = "Like caps-lock, but for your control key.  Give your pinky a rest!";
    homepage = "https://www.emacswiki.org/emacs/control-lock.el";
+    description = "Like caps-lock, but for your control key";
+    license = lib.licenses.free;
    platforms = lib.platforms.all;
  };
 }
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/font-lock-plus/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/font-lock-plus/default.nix
@ -1,10 +1,12 @@
-{ lib
-, fetchFromGitHub
-, trivialBuild
+{
+  lib,
+  fetchFromGitHub,
+  melpaBuild,
 }:

-trivialBuild {
+melpaBuild {
  pname = "font-lock-plus";
+  ename = "font-lock+";
  version = "208-unstable-2018-01-01";

  src = fetchFromGitHub {
@ -14,9 +16,9 @@ trivialBuild {
    hash = "sha256-lFmdVMXIIXZ9ZohAJw5rhxpTv017qIyzmpuKOWDdeJ4=";
  };

-  meta = with lib; {
+  meta = {
    homepage = "https://github.com/emacsmirror/font-lock-plus";
    description = "Enhancements to standard library font-lock.el";
-    license = licenses.gpl2Plus;
+    license = lib.licenses.gpl2Plus;
  };
 }
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lspce/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lspce/default.nix
@ -1,65 +1,34 @@
-{ lib
-, emacs
-, f
-, fetchFromGitHub
-, markdown-mode
-, rustPlatform
-, trivialBuild
-, yasnippet
+{
+  lib,
+  callPackage,
+  f,
+  markdown-mode,
+  melpaBuild,
+  nix-update-script,
+  yasnippet,
 }:

 let
-  version = "1.0.0-unstable-2024-02-03";
-
-  src = fetchFromGitHub {
-    owner = "zbelial";
-    repo = "lspce";
-    rev = "543dcf0ea9e3ff5c142c4365d90b6ae8dc27bd15";
-    hash = "sha256-LZWRQOKkTjNo8jecBRholW9SHpiK0SWcV8yObojpvxo=";
-  };
-
-  meta = {
-    homepage = "https://github.com/zbelial/lspce";
-    description = "LSP Client for Emacs implemented as a module using rust";
-    license = lib.licenses.gpl3Only;
-    maintainers = [ ];
-    inherit (emacs.meta) platforms;
-  };
-
-  lspce-module = rustPlatform.buildRustPackage {
-    inherit version src meta;
-    pname = "lspce-module";
-
-    cargoHash = "sha256-W9rsi7o4KvyRoG/pqRKOBbJtUoSW549Sh8+OV9sLcxs=";
-
-    checkFlags = [
-      # flaky test
-      "--skip=msg::tests::serialize_request_with_null_params"
-    ];
-
-    postInstall = ''
-      mkdir -p $out/share/emacs/site-lisp
-      for f in $out/lib/*; do
-        mv $f $out/share/emacs/site-lisp/lspce-module.''${f##*.}
-      done
-      rmdir $out/lib
-    '';
-  };
+  lspce-module = callPackage ./module.nix { };
 in
-trivialBuild rec {
-  inherit version src meta;
+melpaBuild {
  pname = "lspce";
+  inherit (lspce-module) version src meta;

-  buildInputs = propagatedUserEnvPkgs;
-
-  propagatedUserEnvPkgs = [
+  packageRequires = [
    f
    markdown-mode
    yasnippet
-    lspce-module
  ];

+  # to compile lspce.el, it needs lspce-module.so
+  files = ''(:defaults "${lib.getLib lspce-module}/lib/lspce-module.*")'';
+
  passthru = {
    inherit lspce-module;
+    updateScript = nix-update-script {
+      attrPath = "emacsPackages.lspce.lspce-module";
+      extraArgs = [ "--version=branch" ];
+    };
  };
 }
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lspce/module.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lspce/module.nix
@ -0,0 +1,40 @@
+{
+  lib,
+  fetchFromGitHub,
+  rustPlatform,
+}:
+
+rustPlatform.buildRustPackage {
+  pname = "lspce-module";
+  version = "1.1.0-unstable-2024-07-13";
+
+  src = fetchFromGitHub {
+    owner = "zbelial";
+    repo = "lspce";
+    rev = "01b77a4f544a912409857083842db51a20bfdbf3";
+    hash = "sha256-oew5EujNYGjk/agBw3ECAVe7GZl8rw/4M5t32JM+1T8=";
+  };
+
+  cargoHash = "sha256-YLcSaFHsm/Iw7Q3y/YkfdbYKUPW0DRmaZnZ1A9vKR14=";
+
+  checkFlags = [
+    # flaky test
+    "--skip=msg::tests::serialize_request_with_null_params"
+  ];
+
+  # rename module without changing either suffix or location
+  # use for loop because there seems to be two modules on darwin systems
+  # https://github.com/zbelial/lspce/issues/7#issue-1783708570
+  postInstall = ''
+    for f in $out/lib/*; do
+      mv --verbose $f $out/lib/lspce-module.''${f##*.}
+    done
+  '';
+
+  meta = {
+    homepage = "https://github.com/zbelial/lspce";
+    description = "LSP Client for Emacs implemented as a module using Rust";
+    license = lib.licenses.gpl3Only;
+    maintainers = with lib.maintainers; [ AndersonTorres ];
+  };
+}
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/perl-completion/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/perl-completion/default.nix
@ -1,20 +0,0 @@
-{ trivialBuild
-, fetchurl
-}:
-
-trivialBuild {
-  pname = "perl-completion";
-
-  src = fetchurl {
-    url = "http://emacswiki.org/emacs/download/perl-completion.el";
-    sha256 = "0x6qsgs4hm87k0z9q3g4p6508kc3y123j5jayll3jf3lcl2vm6ks";
-  };
-
-  version = "1.10";
-
-  meta = {
-    broken = true;
-    description = "Minor mode provides useful features for editing perl codes";
-    homepage = "http://emacswiki.org/emacs/PerlCompletion";
-  };
-}
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/sv-kalender/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/sv-kalender/default.nix
@ -1,19 +1,22 @@
-{ fetchurl, lib, trivialBuild }:
+{
+  lib,
+  fetchurl,
+  melpaBuild,
+}:

-trivialBuild {
+melpaBuild {
  pname = "sv-kalender";
  version = "1.11";

  src = fetchurl {
    url = "https://raw.githubusercontent.com/emacsmirror/emacswiki.org/ec4fa36bdba5d2c5c4f5e0400a70768c10e969e8/sv-kalender.el";
-    sha256 = "0mcx7g1pg6kfp0i4b9rh3q9csgdf3054ijswy368bxwdxsjgfz2m";
+    hash = "sha256-VXz3pO6N94XM8FzLSAoYrj3NEh4wp0UiuG6ad8M7nVU=";
  };

-  meta = with lib; {
-    description = "Swedish calendar for Emacs";
+  meta = {
    homepage = "https://www.emacswiki.org/emacs/sv-kalender.el";
-    platforms = platforms.all;
-    license = licenses.gpl3Plus;
-    maintainers = [ maintainers.rycee ];
+    description = "Swedish calendar for Emacs";
+    license = lib.licenses.gpl3Plus;
+    maintainers = [ lib.maintainers.rycee ];
  };
 }
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/texpresso/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/texpresso/default.nix
@ -1,15 +1,14 @@
-{ lib
-, trivialBuild
-, texpresso
+{
+  lib,
+  melpaBuild,
+  texpresso,
 }:
-trivialBuild {
+melpaBuild {
  pname = "texpresso";
  version = texpresso.version;
  src = texpresso.src;

-  preInstall = ''
-    cd emacs
-  '';
+  files = ''("emacs/*.el")'';

  meta = {
    inherit (texpresso.meta) homepage license;
--- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/yes-no/default.nix
+++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/yes-no/default.nix
@ -1,19 +1,22 @@
-{ lib, fetchurl, trivialBuild }:
+{
+  lib,
+  fetchurl,
+  melpaBuild,
+}:

-trivialBuild {
+melpaBuild {
  pname = "yes-no";
  version = "0-unstable-2017-10-01";

  src = fetchurl {
    url = "https://raw.githubusercontent.com/emacsmirror/emacswiki.org/143bcaeb679a8fa8a548e92a5a9d5c2baff50d9c/yes-no.el";
-    sha256 = "03w4wfx885y89ckyd5d95n2571nmmzrll6kr0yan3ip2aw28xq3i";
+    hash = "sha256-ceCOBFfixmGVB3kaSvOv1YZThC2pleYnS8gXhLrjhA8=";
  };

-  meta = with lib; {
-    description = "Specify use of `y-or-n-p' or `yes-or-no-p' on a case-by-case basis";
+  meta = {
    homepage = "https://www.emacswiki.org/emacs/yes-no.el";
-    license = licenses.gpl3Plus;
-    maintainers = with maintainers; [ jcs090218 ];
-    platforms = platforms.all;
+    description = "Specify use of `y-or-n-p' or `yes-or-no-p' on a case-by-case basis";
+    license = lib.licenses.gpl3Plus;
+    maintainers = with lib.maintainers; [ jcs090218 ];
  };
 }
--- a/pkgs/applications/misc/rofi-emoji/default.nix
+++ b/pkgs/applications/misc/rofi-emoji/default.nix
@ -22,13 +22,13 @@

 stdenv.mkDerivation rec {
  pname = "rofi-emoji";
-  version = "3.3.0";
+  version = "3.4.0";

  src = fetchFromGitHub {
    owner = "Mange";
    repo = pname;
    rev = "v${version}";
-    sha256 = "sha256-Y+E5TViKFVtqXMLVEcq1VMLPzG04vfZyThUM7a/fFGM=";
+    hash = "sha256-tF3yAKRUix+if+45rxg5vq83Pu33TQ6oUKWPIs/l4X0=";
  };

  patches = [
--- a/pkgs/applications/networking/firewalld/default.nix
+++ b/pkgs/applications/networking/firewalld/default.nix
@ -31,13 +31,13 @@ let
 in
 stdenv.mkDerivation rec {
  pname = "firewalld";
-  version = "2.1.2";
+  version = "2.2.0";

  src = fetchFromGitHub {
    owner = "firewalld";
    repo = "firewalld";
    rev = "v${version}";
-    sha256 = "sha256-bCLMTWtgEay3fLKOFWUoWpOL1iGDHRR5hu+v06bLxLs=";
+    sha256 = "sha256-MaBYJLNVlDEsMlnyNtf8G8D1Tnvcfv0/bXQ/8f7kBao=";
  };

  patches = [
--- a/pkgs/by-name/ap/application-title-bar/package.nix
+++ b/pkgs/by-name/ap/application-title-bar/package.nix
@ -2,17 +2,18 @@
 , stdenv
 , fetchFromGitHub
 , kdePackages
+, nix-update-script
 }:

 stdenv.mkDerivation (finalAttrs: {
  pname = "application-title-bar";
-  version = "0.6.7";
+  version = "0.6.8";

  src = fetchFromGitHub {
    owner = "antroids";
    repo = "application-title-bar";
    rev = "v${finalAttrs.version}";
-    hash = "sha256-6k8bVVrCzrUno7m9NJWlFpwHsWLNRWudhw5mhpsMxRU=";
+    hash = "sha256-pwCmkFEhxz7ZtNZNnIK2cTo+GDlIRIZ3VQ76n6qJ0Ac=";
  };

  propagatedUserEnvPkgs = with kdePackages; [ kconfig ];
@ -26,6 +27,8 @@ stdenv.mkDerivation (finalAttrs: {
    runHook postInstall
  '';

+  passthru.updateScript = nix-update-script { };
+
  meta = {
    description = "KDE Plasma6 widget with window controls";
    homepage = "https://github.com/antroids/application-title-bar";
--- a/pkgs/by-name/bc/bcachefs-tools/package.nix
+++ b/pkgs/by-name/bc/bcachefs-tools/package.nix
@ -28,13 +28,13 @@

 stdenv.mkDerivation (finalAttrs: {
  pname = "bcachefs-tools";
-  version = "1.9.3";
+  version = "1.9.4";

  src = fetchFromGitHub {
    owner = "koverstreet";
    repo = "bcachefs-tools";
    rev = "refs/tags/v${finalAttrs.version}";
-    hash = "sha256-vKRjxehwqbvvgq+EMHoF3KRiPIxay06MpZRjapBFdVU=";
+    hash = "sha256-qPnlSl1s9QWkODqbrfzIVFLXtDVEmTOihBlDmvHoknY=";
  };

  nativeBuildInputs = [
@ -63,7 +63,7 @@ stdenv.mkDerivation (finalAttrs: {

  cargoDeps = rustPlatform.fetchCargoTarball {
    src = finalAttrs.src;
-    hash = "sha256-JOfS3vCkqI5wvFWgGkw1PIfmzW9yuP/Zp/x98MPdbUQ=";
+    hash = "sha256-ufzxFEgeOaOcZKEPx7kT64Pj2oz6m35exqXQlKxXGb4=";
  };

  makeFlags = [
--- a/pkgs/by-name/bi/binary/package.nix
+++ b/pkgs/by-name/bi/binary/package.nix
@ -3,6 +3,7 @@
  fetchFromGitHub,
  python3Packages,
  appstream,
+  blueprint-compiler,
  desktop-file-utils,
  glib,
  gobject-introspection,
@ -15,18 +16,19 @@

 python3Packages.buildPythonApplication rec {
  pname = "binary";
-  version = "0.3";
+  version = "0.3.1";
  format = "other";

  src = fetchFromGitHub {
    owner = "fizzyizzy05";
    repo = "binary";
    rev = "refs/tags/${version}";
-    hash = "sha256-bR0oCqbnyUTCueT4f0Ij7qbwjNnN4eMDAOUK9MnCEJ0=";
+    hash = "sha256-4Ep7d5grMXCCy9tL8wquJsx13jVIp+piDPeJh6mYFpI=";
  };

  nativeBuildInputs = [
    appstream
+    blueprint-compiler
    desktop-file-utils
    glib # need glib-compile-schemas
    gobject-introspection
--- a/pkgs/by-name/bp/bpftrace/kheaders-not-found-message-fix.patch
+++ b/pkgs/by-name/bp/bpftrace/kheaders-not-found-message-fix.patch
@ -1,59 +0,0 @@
-From 76950d08a3da13dd9e51b2fbef3532c3de79265b Mon Sep 17 00:00:00 2001
-From: Dominique Martinet <asmadeus@codewreck.org>
-Date: Fri, 14 Jun 2024 23:19:05 +0900
-Subject: [PATCH] utils: fix kernel headers not found warning (#3242)
-
-The code would make ksrc and kobj empty then try to print them,
-this would always print empty strings.
-Store is_dir() checks as bool instead and use these, the strings
-cannot be empty if the check passed.
-
-(cherry picked from commit f937803c2ad156ab90b9194965dbfb62bef1ff80)
---
-(mostly to avoid conflicts with the next patch)
- src/utils.cpp | 21 +++++++--------------
- 1 file changed, 7 insertions(+), 14 deletions(-)
-
-diff --git a/src/utils.cpp b/src/utils.cpp
-index bda722136588..c358a401fc83 100644
--- a/src/utils.cpp
-+++ b/src/utils.cpp
-@@ -738,15 +738,11 @@ std::tuple<std::string, std::string> get_kernel_dirs(
-   auto ksrc = kdir + "/source";
-   auto kobj = kdir + "/build";
- 
-  // if one of source/ or build/ is not present - try to use the other one for both.
-  if (!is_dir(ksrc)) {
-    ksrc = "";
-  }
-  if (!is_dir(kobj)) {
-    kobj = "";
-  }
-  if (ksrc.empty() && kobj.empty())
-  {
-+  // if one of source/ or build/ is not present - try to use the other one for
-+  // both.
-+  auto has_ksrc = is_dir(ksrc);
-+  auto has_kobj = is_dir(kobj);
-+  if (!has_ksrc && !has_kobj) {
-     LOG(WARNING) << "Could not find kernel headers in " << ksrc << " or "
-                  << kobj
-                  << ". To specify a particular path to kernel headers, set the "
-@@ -757,12 +753,9 @@ std::tuple<std::string, std::string> get_kernel_dirs(
-                     "file at /sys/kernel/kheaders.tar.xz";
-     return std::make_tuple("", "");
-   }
-  if (ksrc.empty())
-  {
-+  if (!has_ksrc) {
-     ksrc = kobj;
-  }
-  else if (kobj.empty())
-  {
-+  } else if (!has_kobj) {
-     kobj = ksrc;
-   }
- 
-- 
-2.45.2
-
--- a/pkgs/by-name/bp/bpftrace/kheaders-not-found-message-only-on-error.patch
+++ b/pkgs/by-name/bp/bpftrace/kheaders-not-found-message-only-on-error.patch
@ -1,220 +0,0 @@
-From 5208c6275e65d94d0ed169ca2b253602c78c15a8 Mon Sep 17 00:00:00 2001
-From: Dominique Martinet <asmadeus@codewreck.org>
-Date: Fri, 14 Jun 2024 22:32:43 +0900
-Subject: [PATCH] kernel headers: only print kheaders not found warning if
- parsing failed
-
-Current code would print kheaders not found as soon as the code has any
-include, even if the include worked.
-
-This delays printing the warning until we know if parsing succeeded or
-not, and only prints it if parsing failed.
-
-Also update the message to give clearer extraction instructions
---
- CHANGELOG.md       |  2 ++
- src/CMakeLists.txt |  3 ++-
- src/main.cpp       | 40 ++++++++++++++++++++++++----------------
- src/utils.cpp      | 45 +++++++++++++++++++++------------------------
- src/utils.h        |  5 +++--
- 5 files changed, 52 insertions(+), 43 deletions(-)
-
-diff --git a/CHANGELOG.md b/CHANGELOG.md
-index a4aca8b6c85d..181c1bffc9f3 100644
--- a/CHANGELOG.md
-+++ b/CHANGELOG.md
-@@ -10,6 +10,8 @@ ## Unreleased
- 
- #### Added
- #### Changed
-+- Only print kernel headers not found message if parsing fails
-+  - [#3265](https://github.com/bpftrace/bpftrace/pull/3265)
- #### Deprecated
- #### Removed
- #### Fixed
-diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
-index eadb11207052..7b637835afd9 100644
--- a/src/CMakeLists.txt
-+++ b/src/CMakeLists.txt
-@@ -90,11 +90,12 @@ endif()
- 
- if (KERNEL_HEADERS_DIR)
-   MESSAGE(STATUS "Using KERNEL_HEADERS_DIR=${KERNEL_HEADERS_DIR}")
-  target_compile_definitions(runtime PUBLIC KERNEL_HEADERS_DIR="${KERNEL_HEADERS_DIR}")
- endif()
-+target_compile_definitions(runtime PUBLIC KERNEL_HEADERS_DIR="${KERNEL_HEADERS_DIR}")
- if (NOT SYSTEM_INCLUDE_PATHS EQUAL "auto")
-   MESSAGE(STATUS "Using SYSTEM_INCLUDE_PATHS=${SYSTEM_INCLUDE_PATHS}")
- endif()
-+target_compile_definitions(runtime PUBLIC SYSTEM_INCLUDE_PATHS="${SYSTEM_INCLUDE_PATHS}")
- 
- execute_process(
-   COMMAND git describe --abbrev=4 --dirty --tags
-diff --git a/src/main.cpp b/src/main.cpp
-index 3c532b3aa767..7918f90b90ab 100644
--- a/src/main.cpp
-+++ b/src/main.cpp
-@@ -420,24 +420,20 @@ static std::optional<struct timespec> get_delta_taitime()
- 
-   bool should_clang_parse = !(driver.root.get()->c_definitions.empty() &&
-                               bpftrace.btf_set_.empty());
-
-  if (should_clang_parse)
-  {
-+  if (should_clang_parse) {
-     ClangParser clang;
-+    bool found_kernel_headers;
-+    std::string ksrc, kobj;
-+    struct utsname utsname;
-     std::vector<std::string> extra_flags;
-    {
-      struct utsname utsname;
-      uname(&utsname);
-      std::string ksrc, kobj;
-      auto kdirs = get_kernel_dirs(utsname);
-      ksrc = std::get<0>(kdirs);
-      kobj = std::get<1>(kdirs);
-+    uname(&utsname);
-+    found_kernel_headers = get_kernel_dirs(utsname, ksrc, kobj);
- 
-      if (ksrc != "")
-      {
-        extra_flags = get_kernel_cflags(
-            utsname.machine, ksrc, kobj, bpftrace.kconfig);
-      }
-+    if (found_kernel_headers)
-+    {
-+      extra_flags = get_kernel_cflags(
-+          utsname.machine, ksrc, kobj, bpftrace.kconfig);
-+      found_kernel_headers = true;
-     }
-     extra_flags.push_back("-include");
-     extra_flags.push_back(CLANG_WORKAROUNDS_H);
-@@ -453,8 +449,20 @@ static std::optional<struct timespec> get_delta_taitime()
-       extra_flags.push_back(file);
-     }
- 
-    if (!clang.parse(driver.root.get(), bpftrace, extra_flags))
-+    if (!clang.parse(driver.root.get(), bpftrace, extra_flags)) {
-+      if (!found_kernel_headers) {
-+        LOG(WARNING)
-+            << "Could not find kernel headers in " << ksrc << " / " << kobj
-+            << ". To specify a particular path to kernel headers, set the env "
-+            << "variables BPFTRACE_KERNEL_SOURCE and, optionally, "
-+            << "BPFTRACE_KERNEL_BUILD if the kernel was built in a different "
-+            << "directory than its source. You can also point the variable to "
-+            << "a directory with built-in headers extracted from the following "
-+            << "snippet:\nmodprobe kheaders && tar -C <directory> -xf "
-+            << "/sys/kernel/kheaders.tar.xz";
-+      }
-       return nullptr;
-+    }
-   }
- 
-   err = driver.parse();
-diff --git a/src/utils.cpp b/src/utils.cpp
-index c358a401fc83..06d7fa95ff6e 100644
--- a/src/utils.cpp
-+++ b/src/utils.cpp
-@@ -700,8 +700,8 @@ bool is_dir(const std::string& path)
-   return std_filesystem::is_directory(buf, ec);
- }
- 
-// get_kernel_dirs returns {ksrc, kobj} - directories for pristine and
-// generated kernel sources.
-+// get_kernel_dirs fills {ksrc, kobj} - directories for pristine and
-+// generated kernel sources - and returns if they were found.
- //
- // When the kernel was built in its source tree ksrc == kobj, however when
- // the kernel was build in a different directory than its source, ksrc != kobj.
-@@ -714,44 +714,41 @@ bool is_dir(const std::string& path)
- //
- //   /lib/modules/`uname -r`/build/
- //
-// {"", ""} is returned if no trace of kernel headers was found at all.
-// Both ksrc and kobj are guaranteed to be != "", if at least some trace of kernel sources was found.
-std::tuple<std::string, std::string> get_kernel_dirs(
-    const struct utsname &utsname)
-+// false is returned if no trace of kernel headers was found at all, with the guessed
-+// location set anyway for later warning.
-+// Both ksrc and kobj are guaranteed to be != ""
-+bool get_kernel_dirs(const struct utsname &utsname,
-+                     std::string &ksrc,
-+                     std::string &kobj)
- {
-#ifdef KERNEL_HEADERS_DIR
-  return {KERNEL_HEADERS_DIR, KERNEL_HEADERS_DIR};
-#endif
-+  ksrc = kobj = std::string(KERNEL_HEADERS_DIR);
-+  if (!ksrc.empty())
-+    return true;
- 
-   const char *kpath_env = ::getenv("BPFTRACE_KERNEL_SOURCE");
-   if (kpath_env)
-   {
-+    ksrc = std::string(kpath_env);
-     const char *kpath_build_env = ::getenv("BPFTRACE_KERNEL_BUILD");
-    if (!kpath_build_env)
-+    if (kpath_build_env)
-     {
-      kpath_build_env = kpath_env;
-+      kobj = std::string(kpath_build_env);
-+    } else {
-+      kobj = ksrc;
-     }
-    return std::make_tuple(kpath_env, kpath_build_env);
-+    return true;
-   }
- 
-   std::string kdir = std::string("/lib/modules/") + utsname.release;
-  auto ksrc = kdir + "/source";
-  auto kobj = kdir + "/build";
-+  ksrc = kdir + "/source";
-+  kobj = kdir + "/build";
- 
-   // if one of source/ or build/ is not present - try to use the other one for
-   // both.
-   auto has_ksrc = is_dir(ksrc);
-   auto has_kobj = is_dir(kobj);
-   if (!has_ksrc && !has_kobj) {
-    LOG(WARNING) << "Could not find kernel headers in " << ksrc << " or "
-                 << kobj
-                 << ". To specify a particular path to kernel headers, set the "
-                    "env variables BPFTRACE_KERNEL_SOURCE and, optionally, "
-                    "BPFTRACE_KERNEL_BUILD if the kernel was built in a "
-                    "different directory than its source. To create kernel "
-                    "headers run 'modprobe kheaders', which will create a tar "
-                    "file at /sys/kernel/kheaders.tar.xz";
-    return std::make_tuple("", "");
-+    return false;
-   }
-   if (!has_ksrc) {
-     ksrc = kobj;
-@@ -759,7 +756,7 @@ std::tuple<std::string, std::string> get_kernel_dirs(
-     kobj = ksrc;
-   }
- 
-  return std::make_tuple(ksrc, kobj);
-+  return true;
- }
- 
- const std::string &is_deprecated(const std::string &str)
-diff --git a/src/utils.h b/src/utils.h
-index bc78bd2176b5..9bd5395eab22 100644
--- a/src/utils.h
-+++ b/src/utils.h
-@@ -186,8 +186,9 @@ std::vector<int> get_online_cpus();
- std::vector<int> get_possible_cpus();
- bool is_dir(const std::string &path);
- bool file_exists_and_ownedby_root(const char *f);
-std::tuple<std::string, std::string> get_kernel_dirs(
-    const struct utsname &utsname);
-+bool get_kernel_dirs(const struct utsname &utsname,
-+                     std::string &ksrc,
-+                     std::string &kobj);
- std::vector<std::string> get_kernel_cflags(const char *uname_machine,
-                                            const std::string &ksrc,
-                                            const std::string &kobj,
-- 
-2.45.2
-
--- a/pkgs/by-name/bp/bpftrace/override-system-headers.patch
+++ b/pkgs/by-name/bp/bpftrace/override-system-headers.patch
@ -1,94 +0,0 @@
-From c1737d4ab6ab263932caa9e3ac170ebe3e28d404 Mon Sep 17 00:00:00 2001
-From: Dominique Martinet <asmadeus@codewreck.org>
-Date: Fri, 14 Jun 2024 21:56:46 +0900
-Subject: [PATCH] clang_parser system_include_paths: allow overriding at
- compile time
-
-While bpftrace depends on libclang it can be installed without a clang
-frontend, so some distributions might want to make these paths fixed as
-they are unlikely to change.
-
-In particular, this is necessary to include system libraries as used by
-older versions of tcpaccept.bt (they now no longer require these since
-#3152, but that illustrate this was a recurring problem)
-
-(cherry picked from commit 5bf5f86313600b16c8c23e03b31337941cbefdd0)
---
- CMakeLists.txt       |  2 ++
- src/CMakeLists.txt   |  4 +++-
- src/clang_parser.cpp | 19 +++++++++++++++----
- 3 files changed, 20 insertions(+), 5 deletions(-)
-
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index cd620d0e56e5..ade33c503efb 100644
--- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -21,6 +21,8 @@ set(VENDOR_GTEST OFF CACHE BOOL "Clone gtest from github")
- set(BUILD_FUZZ OFF CACHE BOOL "Build bpftrace for fuzzing")
- set(USE_LIBFUZZER OFF CACHE BOOL "Use libfuzzer for fuzzing")
- set(FUZZ_TARGET "codegen" CACHE STRING "Fuzzing target")
-+set(KERNEL_HEADERS_DIR "" CACHE PATH "Hard-code kernel headers directory")
-+set(SYSTEM_INCLUDE_PATHS "auto" CACHE STRING "Hard-code system include paths (colon separated, the default value \"auto\" queries clang at runtime)")
- 
- set(ENABLE_SKB_OUTPUT ON CACHE BOOL "Enable skb_output, will include libpcap")
- 
-diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
-index 88f5928c8a75..eadb11207052 100644
--- a/src/CMakeLists.txt
-+++ b/src/CMakeLists.txt
-@@ -88,11 +88,13 @@ endif()
- 
- # compile definitions
- 
-set(KERNEL_HEADERS_DIR "" CACHE PATH "Hard-code kernel headers directory")
- if (KERNEL_HEADERS_DIR)
-   MESSAGE(STATUS "Using KERNEL_HEADERS_DIR=${KERNEL_HEADERS_DIR}")
-   target_compile_definitions(runtime PUBLIC KERNEL_HEADERS_DIR="${KERNEL_HEADERS_DIR}")
- endif()
-+if (NOT SYSTEM_INCLUDE_PATHS EQUAL "auto")
-+  MESSAGE(STATUS "Using SYSTEM_INCLUDE_PATHS=${SYSTEM_INCLUDE_PATHS}")
-+endif()
- 
- execute_process(
-   COMMAND git describe --abbrev=4 --dirty --tags
-diff --git a/src/clang_parser.cpp b/src/clang_parser.cpp
-index 8b6689454267..9367e6692eb0 100644
--- a/src/clang_parser.cpp
-+++ b/src/clang_parser.cpp
-@@ -882,11 +882,9 @@ std::string ClangParser::get_arch_include_path()
-   return "/usr/include/" + std::string(utsname.machine) + "-linux-gnu";
- }
- 
-std::vector<std::string> ClangParser::system_include_paths()
-+static void query_clang_include_dirs(std::vector<std::string> &result)
- {
-  std::vector<std::string> result;
-  try
-  {
-+  try {
-     auto clang = "clang-" + std::to_string(LLVM_VERSION_MAJOR);
-     auto cmd = clang + " -Wp,-v -x c -fsyntax-only /dev/null 2>&1";
-     auto check = exec_system(cmd.c_str());
-@@ -902,6 +900,19 @@ std::vector<std::string> ClangParser::system_include_paths()
-   catch (std::runtime_error &)
-   { // If exec_system fails, just ignore it
-   }
-+}
-+
-+std::vector<std::string> ClangParser::system_include_paths()
-+{
-+  std::vector<std::string> result;
-+  std::istringstream lines(SYSTEM_INCLUDE_PATHS);
-+  std::string line;
-+  while (std::getline(lines, line, ':')) {
-+    if (line == "auto")
-+      query_clang_include_dirs(result);
-+    else
-+      result.push_back(trim(line));
-+  }
- 
-   if (result.empty())
-     result = { "/usr/local/include", "/usr/include" };
-- 
-2.45.2
-
--- a/pkgs/by-name/bp/bpftrace/package.nix
+++ b/pkgs/by-name/bp/bpftrace/package.nix
@ -4,18 +4,19 @@
 , cereal, asciidoctor
 , cmake, pkg-config, flex, bison
 , util-linux
+, fetchpatch
 , nixosTests
 }:

 stdenv.mkDerivation rec {
  pname = "bpftrace";
-  version = "0.20.4";
+  version = "0.21.2";

  src = fetchFromGitHub {
    owner = "iovisor";
    repo  = "bpftrace";
    rev   = "v${version}";
-    hash  = "sha256-GJSUHMOp3vCWj8C+1mBHcnUgxLUWUz8Jd8wpq7u0q3s=";
+    hash  = "sha256-/2m+5iFE7R+ZEc/VcgWAhkLD/jEK88roUUOUyYODi0U=";
  };


@ -45,16 +46,17 @@ stdenv.mkDerivation rec {
  ];

  patches = [
-    # https://github.com/bpftrace/bpftrace/pull/3243 (merged)
-    ./override-system-headers.patch
-    # https://github.com/bpftrace/bpftrace/pull/3152 (merged)
-    ./tcp-bt-no-includes.patch
-    # https://github.com/bpftrace/bpftrace/pull/3262 (merged)
-    ./runqlat-bt-no-includes.patch
-    # https://github.com/bpftrace/bpftrace/pull/3242 (merged)
-    ./kheaders-not-found-message-fix.patch
-    # https://github.com/bpftrace/bpftrace/pull/3265
-    ./kheaders-not-found-message-only-on-error.patch
+    (fetchpatch {
+      name = "runqlat-bt-no-includes.patch";
+      url = "https://github.com/bpftrace/bpftrace/pull/3262.patch";
+      hash = "sha256-9yqaZeG1Uf2cC9Aa40c2QUTQRl8n2NO1nq278hf9P4M=";
+    })
+    (fetchpatch {
+      name = "kheaders-not-found-message-only-on-error.patch";
+      url = "https://github.com/bpftrace/bpftrace/pull/3265.patch";
+      hash = "sha256-8AICMzwq5Evy9+hmZhFjccw/HmgZ9t+YIoHApjLv6Uc=";
+      excludes = [ "CHANGELOG.md" ];
+    })
  ];

  # Pull BPF scripts into $PATH (next to their bcc program equivalents), but do
--- a/pkgs/by-name/bp/bpftrace/runqlat-bt-no-includes.patch
+++ b/pkgs/by-name/bp/bpftrace/runqlat-bt-no-includes.patch
@ -1,45 +0,0 @@
-From 9b5f22854297aabb924969c25af66461d8d2fcb9 Mon Sep 17 00:00:00 2001
-From: Dominique Martinet <asmadeus@codewreck.org>
-Date: Fri, 21 Jun 2024 21:02:09 +0900
-Subject: [PATCH] tools/runqlat: provide TASK_RUNNING as a define
-
-runqlat requires kernel headers to run even with BTF, just because of a
-define.
-TASK_RUNNING isn't part of the stable API but it's never changed in all
-of the linux git history so let's pretend it's stable and just define
-it.
-
-If we find a way to handle kheaders again in the future we might want to
-consider reverting this.
-
-Fixes: #3255
-(cherry picked from commit aa041d9d85f9ec11235c39fdcb5833412ec27083)
---
- tools/runqlat.bt | 10 ++++++++++
- 1 file changed, 10 insertions(+)
-
-diff --git a/tools/runqlat.bt b/tools/runqlat.bt
-index 3d71b76062eb..1298f399aee7 100755
--- a/tools/runqlat.bt
-+++ b/tools/runqlat.bt
-@@ -11,7 +11,17 @@
-  * 17-Sep-2018	Brendan Gregg	Created this.
-  */
- 
-+#ifndef BPFTRACE_HAVE_BTF
- #include <linux/sched.h>
-+#else
-+/*
-+ * With BTF providing types, full headers are not needed.
-+ * We only need to supply the preprocessor defines used in this script.
-+ * TASK_RUNNING is not arch-dependant and has not changed in the linux
-+ * git history (it is not part of the stable API though)
-+ */
-+#define TASK_RUNNING 0
-+#endif
- 
- BEGIN
- {
-- 
-2.45.2
-
--- a/pkgs/by-name/bp/bpftrace/tcp-bt-no-includes.patch
+++ b/pkgs/by-name/bp/bpftrace/tcp-bt-no-includes.patch
@ -1,114 +0,0 @@
-From ebb12512f6ea0a1113ad8ddf30db26128f7a3426 Mon Sep 17 00:00:00 2001
-From: Dominique Martinet <asmadeus@codewreck.org>
-Date: Sun, 23 Jun 2024 20:41:01 +0900
-Subject: [PATCH] With BTF, users do not need libc headers installed for
- AF_INET/AF_INET6
-
-Signed-off-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
-(cherry picked from commit c0b9d252a43f99b9091245dedb178a6874803306)
---
- tools/tcpaccept.bt  | 8 +++++++-
- tools/tcpconnect.bt | 8 +++++++-
- tools/tcpdrop.bt    | 8 +++++++-
- tools/tcplife.bt    | 8 +++++++-
- tools/tcpretrans.bt | 8 +++++++-
- 5 files changed, 35 insertions(+), 5 deletions(-)
-
-diff --git a/tools/tcpaccept.bt b/tools/tcpaccept.bt
-index 08e6af0158fc..cbffe36889ee 100755
--- a/tools/tcpaccept.bt
-+++ b/tools/tcpaccept.bt
-@@ -20,7 +20,13 @@
- #include <linux/socket.h>
- #include <net/sock.h>
- #else
-#include <sys/socket.h>
-+/*
-+ * With BTF providing types, socket headers are not needed.
-+ * We only need to supply the preprocessor defines in this script.
-+ * AF_INET/AF_INET6 are part of the stable arch-independent Linux ABI
-+ */
-+#define AF_INET   2
-+#define AF_INET6 10
- #endif
- 
- BEGIN
-diff --git a/tools/tcpconnect.bt b/tools/tcpconnect.bt
-index 1ac1eb99e9ad..636337275cd8 100755
--- a/tools/tcpconnect.bt
-+++ b/tools/tcpconnect.bt
-@@ -22,7 +22,13 @@
- #include <linux/socket.h>
- #include <net/sock.h>
- #else
-#include <sys/socket.h>
-+/*
-+ * BTF provides the types, we just need to define AF_INET and AF_INET6.
-+ * These are Linux ABI defines, and are not architecture-specific.
-+ * With BTF, this allows tcpconnect.bt to work without glibc headers:
-+ */
-+#define AF_INET   2 /* IPv4 */
-+#define AF_INET6 10 /* IPv6 */
- #endif
- 
- BEGIN
-diff --git a/tools/tcpdrop.bt b/tools/tcpdrop.bt
-index fd3e55f490bf..a56bf69fcc6c 100755
--- a/tools/tcpdrop.bt
-+++ b/tools/tcpdrop.bt
-@@ -24,7 +24,13 @@
- #include <linux/socket.h>
- #include <net/sock.h>
- #else
-#include <sys/socket.h>
-+/*
-+ * With BTF providing types, socket headers are not needed.
-+ * We only need to supply the preprocessor defines in this script.
-+ * AF_INET/AF_INET6 are part of the stable arch-independent Linux ABI
-+ */
-+#define AF_INET   2
-+#define AF_INET6 10
- #endif
- 
- BEGIN
-diff --git a/tools/tcplife.bt b/tools/tcplife.bt
-index dd4c1d68284e..d5a09c4e5da9 100755
--- a/tools/tcplife.bt
-+++ b/tools/tcplife.bt
-@@ -19,7 +19,13 @@
- #include <linux/socket.h>
- #include <linux/tcp.h>
- #else
-#include <sys/socket.h>
-+/*
-+ * With BTF providing types, socket headers are not needed.
-+ * We only need to supply the preprocessor defines in this script.
-+ * AF_INET/AF_INET6 are part of the stable arch-independent Linux ABI
-+ */
-+#define AF_INET   2
-+#define AF_INET6 10
- #endif
- 
- BEGIN
-diff --git a/tools/tcpretrans.bt b/tools/tcpretrans.bt
-index ee2975d6e545..32a11bfa81b2 100755
--- a/tools/tcpretrans.bt
-+++ b/tools/tcpretrans.bt
-@@ -21,7 +21,13 @@
- #include <linux/socket.h>
- #include <net/sock.h>
- #else
-#include <sys/socket.h>
-+/*
-+ * With BTF providing types, socket headers are not needed.
-+ * We only need to supply the preprocessor defines in this script.
-+ * AF_INET/AF_INET6 are part of the stable arch-independent Linux ABI
-+ */
-+#define AF_INET   2
-+#define AF_INET6 10
- #endif
- 
- BEGIN
-- 
-2.45.2
-
--- a/pkgs/by-name/cl/clippy-sarif/package.nix
+++ b/pkgs/by-name/cl/clippy-sarif/package.nix
@ -1,39 +1,35 @@
 {
  lib,
-  fetchFromGitHub,
+  fetchCrate,
  rustPlatform,
  clippy,
-  clippy-sarif,
-  testers,
+  nix-update-script,
+  versionCheckHook,
 }:
 rustPlatform.buildRustPackage rec {
  pname = "clippy-sarif";
-  version = "0.4.2";
+  version = "0.5.0";

-  src = fetchFromGitHub {
-    owner = "psastras";
-    repo = "sarif-rs";
-    rev = "clippy-sarif-v${version}";
-    hash = "sha256-EzWzDeIeSJ11CVcVyAhMjYQJcKHnieRrFkULc5eXAno=";
+  src = fetchCrate {
+    inherit pname version;
+    hash = "sha256-ylfL4N1BtbB1R7+Glwtgn5E6/v3wQ6oXWdmeyKNHdOw=";
  };

-  cargoHash = "sha256-F3NrqkqLdvMRIuozCMMqwlrrf5QrnmcEhy4TGSzPhiU=";
-  cargoBuildFlags = [
-    "--package"
-    "clippy-sarif"
-  ];
-  cargoTestFlags = cargoBuildFlags;
+  cargoHash = "sha256-O0bLgj7rWwbEswVMfexsBGgJyObxseOohYht21Y6HpU=";
+
+  nativeInstallCheckInputs = [ versionCheckHook ];
+  doInstallCheck = true;

  passthru = {
-    tests.version = testers.testVersion { package = clippy-sarif; };
+    updateScript = nix-update-script { };
  };

  meta = {
    description = "A CLI tool to convert clippy diagnostics into SARIF";
-    mainProgram = "clippy-sarif";
    homepage = "https://psastras.github.io/sarif-rs";
    license = lib.licenses.mit;
    maintainers = with lib.maintainers; [ getchoo ];
+    mainProgram = "clippy-sarif";
    inherit (clippy.meta) platforms;
  };
 }
--- a/pkgs/by-name/cl/clipse/package.nix
+++ b/pkgs/by-name/cl/clipse/package.nix
@ -5,16 +5,16 @@

 buildGoModule rec {
  pname = "clipse";
-  version = "1.0.7";
+  version = "1.0.9";

  src = fetchFromGitHub {
    owner = "savedra1";
    repo = "clipse";
    rev = "v${version}";
-    hash = "sha256-G26xPABF2Cdxk1N71EaMjKzju0jl5tDJ1WrISjebZVM=";
+    hash = "sha256-Kpe/LiAreZXRqh6BHvUIn0GcHloKo3A0WOdlRF2ygdc=";
  };

-  vendorHash = "sha256-QEBRlwNS8K44chB3fMOJZxYnIaWMnuDySIhKfF7XtxM=";
+  vendorHash = "sha256-Hdr9NRqHJxpfrV2G1KuHGg3T+cPLKhZXEW02f1ptgsw=";

  meta = {
    description = "Useful clipboard manager TUI for Unix";
--- a/pkgs/by-name/co/cosmic-icons/package.nix
+++ b/pkgs/by-name/co/cosmic-icons/package.nix
@ -8,13 +8,13 @@
 }:
 stdenvNoCC.mkDerivation rec {
  pname = "cosmic-icons";
-  version = "0-unstable-2024-05-21";
+  version = "0-unstable-2024-07-17";

  src = fetchFromGitHub {
    owner = "pop-os";
    repo = pname;
-    rev = "9aad1ab6d5538938e69955b5f74576ac020be425";
-    sha256 = "sha256-ln2spVA8dlXi/B0ro/FIoWiIClPmwH9E9IqhrKPedys=";
+    rev = "73be037ba266b08a2fa7b544d78e7f143a2894c5";
+    sha256 = "sha256-Lyn9VneGr7RcfMPREOs3tP/HzpoRcnmw/nyo7kzOKCw=";
  };

  nativeBuildInputs = [ just ];
--- a/pkgs/by-name/cs/csvkit/package.nix
+++ b/pkgs/by-name/cs/csvkit/package.nix
@ -5,7 +5,7 @@

 let
  pname = "csvkit";
-  version = "2.0.0";
+  version = "2.0.1";
  pythonEnv = python3;
 in
 pythonEnv.pkgs.buildPythonApplication {
@ -14,7 +14,7 @@ pythonEnv.pkgs.buildPythonApplication {

  src = fetchPypi {
    inherit pname version;
-    hash = "sha256-MR8heHYVqRZWiX4hfGKrJshEbWcwm2G9AT40WzWBb98=";
+    hash = "sha256-qpRgJm1XE/8xKkFO0+3Ybgw6MdqbLidYy+VkP+EUbdE=";
  };

  propagatedBuildInputs = with pythonEnv.pkgs; [
--- a/pkgs/by-name/di/diesel-cli/package.nix
+++ b/pkgs/by-name/di/diesel-cli/package.nix
@ -27,15 +27,15 @@ assert lib.assertMsg (lib.elem true [

 rustPlatform.buildRustPackage rec {
  pname = "diesel-cli";
-  version = "2.1.1";
+  version = "2.2.1";

  src = fetchCrate {
    inherit version;
    crateName = "diesel_cli";
-    hash = "sha256-fpvC9C30DJy5ih+sFTTMoiykUHqG6OzDhF9jvix1Ctg=";
+    hash = "sha256-B+AHTJgOBUGVc4J2VcwuqVwAbm0wpsFHc9+gc5g2RAM=";
  };

-  cargoHash = "sha256-nPmUCww8sOJwnG7+uIflLPgT87xPX0s7g0AcuDKhY2I=";
+  cargoHash = "sha256-HFhkePq2fZ7MxZfH0jLlS5B10jqf15+RUcGZnDbML5Q=";

  nativeBuildInputs = [
    installShellFiles
@ -76,6 +76,9 @@ rustPlatform.buildRustPackage rec {
  ];
  cargoCheckFeatures = buildFeatures;

+  # Tests currently fail due to *many* duplicate definition errors
+  doCheck = false;
+
  postInstall = ''
    installShellCompletion --cmd diesel \
      --bash <($out/bin/diesel completions bash) \
--- a/pkgs/by-name/fi/firefly-iii/package.nix
+++ b/pkgs/by-name/fi/firefly-iii/package.nix
@ -1,8 +1,12 @@
 { lib
 , fetchFromGitHub
-, buildNpmPackage
+, stdenvNoCC
+, nodejs
+, fetchNpmDeps
+, buildPackages
 , php83
 , nixosTests
+, nix-update-script
 , dataDir ? "/var/lib/firefly-iii"
 }:

@ -10,6 +14,7 @@ let
  pname = "firefly-iii";
  version = "6.1.18";
  phpPackage = php83;
+  npmDepsHash = "sha256-MoxkNxfVeIFkiNVzfehQ9FpC65kBj8ZmvwaRf4MVRIg=";

  src = fetchFromGitHub {
    owner = "firefly-iii";
@ -17,36 +22,62 @@ let
    rev = "v${version}";
    hash = "sha256-mA7gvKhHouUUz1Aix7253O/+VcufoEFwdcJeZxnazEo=";
  };
-
-  assets = buildNpmPackage {
-    pname = "${pname}-assets";
-    inherit version src;
-    npmDepsHash = "sha256-MoxkNxfVeIFkiNVzfehQ9FpC65kBj8ZmvwaRf4MVRIg=";
-    dontNpmBuild = true;
-    installPhase = ''
-      runHook preInstall
-      npm run prod --workspace=v1
-      npm run build --workspace=v2
-      cp -r ./public $out/
-      runHook postInstall
-    '';
-  };
 in

-phpPackage.buildComposerProject (finalAttrs: {
+stdenvNoCC.mkDerivation (finalAttrs: {
  inherit pname src version;

+  buildInputs = [ phpPackage ];
+
+  nativeBuildInputs = [
+    nodejs
+    nodejs.python
+    buildPackages.npmHooks.npmConfigHook
+    phpPackage.composerHooks.composerInstallHook
+    phpPackage.packages.composer-local-repo-plugin
+  ];
+
+  composerNoDev = true;
+  composerNoPlugins = true;
+  composerNoScripts = true;
+  composerStrictValidation = true;
+  strictDeps = true;
+
  vendorHash = "sha256-EpMypgj6lZDz6T94bGoCUH9IVwh7VB4Ds08AcCsreRw=";

+  npmDeps = fetchNpmDeps {
+    inherit src;
+    name = "${pname}-npm-deps";
+    hash = npmDepsHash;
+  };
+
+  composerRepository = phpPackage.mkComposerRepository {
+    inherit (finalAttrs)
+      pname
+      src
+      vendorHash
+      version
+      ;
+    composerNoDev = true;
+    composerNoPlugins = true;
+    composerNoScripts = true;
+    composerStrictValidation = true;
+  };
+
+  preInstall = ''
+    npm run prod --workspace=v1
+    npm run build --workspace=v2
+  '';
+
  passthru = {
    inherit phpPackage;
    tests = nixosTests.firefly-iii;
+    updateScript = nix-update-script { };
  };

  postInstall = ''
    mv $out/share/php/${pname}/* $out/
-    rm -R $out/share $out/storage $out/bootstrap/cache $out/public
-    cp -a ${assets} $out/public
+    rm -R $out/share $out/storage $out/bootstrap/cache $out/node_modules
    ln -s ${dataDir}/storage $out/storage
    ln -s ${dataDir}/cache $out/bootstrap/cache
  '';
@ -56,6 +87,6 @@ phpPackage.buildComposerProject (finalAttrs: {
    description = "Firefly III: a personal finances manager";
    homepage = "https://github.com/firefly-iii/firefly-iii";
    license = lib.licenses.agpl3Only;
-    maintainers = [ lib.maintainers.savyajha ];
+    maintainers = [ lib.maintainers.savyajha lib.maintainers.patrickdag ];
  };
 })
--- a/pkgs/by-name/fl/flite/package.nix
+++ b/pkgs/by-name/fl/flite/package.nix
@ -5,6 +5,7 @@
  fetchpatch,
  alsa-lib,
  libpulseaudio,
+  nix-update-script,
  testers,
  audioBackend ? "pulseaudio",
 }:
@ -62,6 +63,8 @@ stdenv.mkDerivation (finalAttrs: {
      command = "flite --help";
      package = finalAttrs.finalPackage;
    };
+
+    updateScript = nix-update-script { };
  };

  meta = {
--- a/pkgs/by-name/ha/hadolint-sarif/package.nix
+++ b/pkgs/by-name/ha/hadolint-sarif/package.nix
@ -1,37 +1,33 @@
 {
  lib,
-  fetchFromGitHub,
+  fetchCrate,
  rustPlatform,
-  hadolint-sarif,
-  testers,
+  nix-update-script,
+  versionCheckHook,
 }:
 rustPlatform.buildRustPackage rec {
  pname = "hadolint-sarif";
-  version = "0.4.2";
+  version = "0.5.0";

-  src = fetchFromGitHub {
-    owner = "psastras";
-    repo = "sarif-rs";
-    rev = "hadolint-sarif-v${version}";
-    hash = "sha256-EzWzDeIeSJ11CVcVyAhMjYQJcKHnieRrFkULc5eXAno=";
+  src = fetchCrate {
+    inherit pname version;
+    hash = "sha256-Zh3y31Q+ue1TqncZpdX+fAp2yfEnv8W8jkzUW7UvrKg=";
  };

-  cargoHash = "sha256-AMRL1XANyze8bJe3fdgZvBnl/NyuWP13jixixqiPmiw=";
-  cargoBuildFlags = [
-    "--package"
-    "hadolint-sarif"
-  ];
-  cargoTestFlags = cargoBuildFlags;
+  cargoHash = "sha256-bwEQ9lZXvZL6JN24N8gRdbV5gcFiH1fQ59PQILfW1z8=";
+
+  nativeInstallCheckInputs = [ versionCheckHook ];
+  doInstallCheck = true;

  passthru = {
-    tests.version = testers.testVersion { package = hadolint-sarif; };
+    updateScript = nix-update-script { };
  };

  meta = {
    description = "A CLI tool to convert hadolint diagnostics into SARIF";
    homepage = "https://psastras.github.io/sarif-rs";
-    mainProgram = "hadolint-sarif";
-    maintainers = with lib.maintainers; [ getchoo ];
    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ getchoo ];
+    mainProgram = "hadolint-sarif";
  };
 }
--- a/pkgs/by-name/ja/jasp-desktop/modules.nix
+++ b/pkgs/by-name/ja/jasp-desktop/modules.nix
@ -1,8 +1,8 @@
-{ R
-, rPackages
-, fetchFromGitHub
-, jasp-src
-, jasp-version
+{
+  rPackages,
+  fetchFromGitHub,
+  jasp-src,
+  jasp-version,
 }:

 with rPackages;
@ -21,7 +21,18 @@ let
    src = jasp-src;
    sourceRoot = "${jasp-src.name}/Engine/jaspGraphs";

-    propagatedBuildInputs = [ ggplot2 gridExtra gtable lifecycle jsonlite R6 RColorBrewer rlang scales viridisLite ];
+    propagatedBuildInputs = [
+      ggplot2
+      gridExtra
+      gtable
+      lifecycle
+      jsonlite
+      R6
+      RColorBrewer
+      rlang
+      scales
+      viridisLite
+    ];
  };

  jaspBase = buildRPackage {
@ -41,7 +52,31 @@ let
      cp -r --no-preserve=all ${jaspColumnEncoder-src} inst/include/jaspColumnEncoder
    '';

-    propagatedBuildInputs = [ cli codetools ggplot2 gridExtra gridGraphics jaspGraphs jsonlite lifecycle modules officer pkgbuild plyr qgraph ragg R6 Rcpp renv remotes rjson rvg svglite systemfonts withr ];
+    propagatedBuildInputs = [
+      cli
+      codetools
+      ggplot2
+      gridExtra
+      gridGraphics
+      jaspGraphs
+      jsonlite
+      lifecycle
+      modules
+      officer
+      pkgbuild
+      plyr
+      qgraph
+      ragg
+      R6
+      Rcpp
+      renv
+      remotes
+      rjson
+      rvg
+      svglite
+      systemfonts
+      withr
+    ];
  };

  stanova = buildRPackage {
@ -52,7 +87,13 @@ let
      rev = "988ad8e07cda1674b881570a85502be7795fbd4e";
      hash = "sha256-tAeHqTHao2KVRNFBDWmuF++H31aNN6O1ss1Io500QBY=";
    };
-    propagatedBuildInputs = [ emmeans lme4 coda rstan MASS ];
+    propagatedBuildInputs = [
+      emmeans
+      lme4
+      coda
+      rstan
+      MASS
+    ];
  };

  bstats = buildRPackage {
@ -63,7 +104,11 @@ let
      rev = "42d34c18df08d233825bae34fdc0dfa0cd70ce8c";
      hash = "sha256-N2KmbTPbyvzsZTWBRE2x7bteccnzokUWDOB4mOWUdJk=";
    };
-    propagatedBuildInputs = [ hypergeo purrr SuppDists ];
+    propagatedBuildInputs = [
+      hypergeo
+      purrr
+      SuppDists
+    ];
  };

  flexplot = buildRPackage {
@ -71,10 +116,28 @@ let
    src = fetchFromGitHub {
      owner = "dustinfife";
      repo = "flexplot";
-      rev = "4223ad5fb56028018b964d6f9f5aa5bac8710821";
-      hash = "sha256-L+Ed2bIWjq3ZIAGookp8dAjDSeldEbcwynwFVVZ9IcU=";
+      rev = "303a03968f677e71c99a5e22f6352c0811b7b2fb";
+      hash = "sha256-iT5CdtNk0Oi8gga76L6YtyWGACAwpN8A/yTBy7JJERc=";
    };
-    propagatedBuildInputs = [ cowplot MASS tibble withr dplyr magrittr forcats purrr plyr R6 ggplot2 patchwork ggsci lme4 party mgcv rlang ];
+    propagatedBuildInputs = [
+      cowplot
+      MASS
+      tibble
+      withr
+      dplyr
+      magrittr
+      forcats
+      purrr
+      plyr
+      R6
+      ggplot2
+      patchwork
+      ggsci
+      lme4
+      party
+      mgcv
+      rlang
+    ];
  };

  # conting has been removed from CRAN
@ -86,10 +149,17 @@ let
      rev = "03a4eb9a687e015d602022a01d4e638324c110c8";
      hash = "sha256-Sp09YZz1WGyefn31Zy1qGufoKjtuEEZHO+wJvoLArf0=";
    };
-    propagatedBuildInputs = [ mvtnorm gtools tseries coda ];
+    propagatedBuildInputs = [
+      mvtnorm
+      gtools
+      tseries
+      coda
+    ];
  };

-  buildJaspModule = name: deps: buildRPackage {
+  buildJaspModule =
+    name: deps:
+    buildRPackage {
      name = "${name}-${jasp-version}";
      version = jasp-version;
      src = jasp-src;
@ -98,40 +168,442 @@ let
    };
 in
 {
-  engine = { inherit jaspBase jaspGraphs; };
+  engine = {
+    inherit jaspBase jaspGraphs;
+  };
+
  modules = rec {
-    jaspAcceptanceSampling = buildJaspModule "jaspAcceptanceSampling" [ abtest BayesFactor conting' ggplot2 jaspBase jaspGraphs plyr stringr vcd vcdExtra AcceptanceSampling ];
-    jaspAnova = buildJaspModule "jaspAnova" [ afex BayesFactor boot car colorspace emmeans ggplot2 jaspBase jaspDescriptives jaspGraphs jaspTTests KernSmooth matrixStats multcomp onewaytests plyr stringi stringr restriktor ];
-    jaspAudit = buildJaspModule "jaspAudit" [ bstats extraDistr ggplot2 ggrepel jaspBase jaspGraphs jfa ];
-    jaspBain = buildJaspModule "jaspBain" [ bain lavaan ggplot2 semPlot stringr jaspBase jaspGraphs jaspSem ];
-    jaspBsts = buildJaspModule "jaspBsts" [ Boom bsts ggplot2 jaspBase jaspGraphs matrixStats reshape2 ];
-    jaspCircular = buildJaspModule "jaspCircular" [ jaspBase jaspGraphs circular ggplot2 ];
-    jaspCochrane = buildJaspModule "jaspCochrane" [ jaspBase jaspGraphs jaspDescriptives jaspMetaAnalysis ];
-    jaspDescriptives = buildJaspModule "jaspDescriptives" [ ggplot2 ggrepel jaspBase jaspGraphs ];
-    jaspDistributions = buildJaspModule "jaspDistributions" [ car fitdistrplus ggplot2 goftest gnorm jaspBase jaspGraphs MASS sgt sn ];
-    jaspEquivalenceTTests = buildJaspModule "jaspEquivalenceTTests" [ BayesFactor ggplot2 jaspBase jaspGraphs metaBMA TOSTER jaspTTests ];
-    jaspFactor = buildJaspModule "jaspFactor" [ ggplot2 jaspBase jaspGraphs jaspSem lavaan psych qgraph reshape2 semPlot GPArotation Rcsdp semTools ];
-    jaspFrequencies = buildJaspModule "jaspFrequencies" [ abtest BayesFactor conting' multibridge ggplot2 jaspBase jaspGraphs plyr stringr vcd vcdExtra ];
-    jaspJags = buildJaspModule "jaspJags" [ coda ggplot2 ggtext hexbin jaspBase jaspGraphs rjags scales stringr ];
-    jaspLearnBayes = buildJaspModule "jaspLearnBayes" [ extraDistr ggplot2 HDInterval jaspBase jaspGraphs MASS MCMCpack MGLM scales ggalluvial ragg runjags ggdist png posterior ];
-    jaspLearnStats = buildJaspModule "jaspLearnStats" [ extraDistr ggplot2 jaspBase jaspGraphs jaspDistributions jaspDescriptives jaspTTests ggforce tidyr igraph ];
-    jaspMachineLearning = buildJaspModule "jaspMachineLearning" [ kknn AUC cluster colorspace DALEX dbscan e1071 fpc gbm Gmedian ggparty ggdendro ggnetwork ggplot2 ggrepel ggridges glmnet jaspBase jaspGraphs MASS mvnormalTest neuralnet network partykit plyr randomForest rpart ROCR Rtsne signal ];
-    jaspMetaAnalysis = buildJaspModule "jaspMetaAnalysis" [ dplyr ggplot2 jaspBase jaspGraphs MASS metaBMA metafor psych purrr rstan stringr tibble tidyr weightr BayesTools RoBMA metamisc ggmcmc pema ];
-    jaspMixedModels = buildJaspModule "jaspMixedModels" [ afex emmeans ggplot2 ggpol jaspBase jaspGraphs lme4 loo mgcv rstan rstanarm stanova withr ];
-    jaspNetwork = buildJaspModule "jaspNetwork" [ bootnet BDgraph corpcor dplyr foreach ggplot2 gtools HDInterval huge IsingSampler jaspBase jaspGraphs mvtnorm qgraph reshape2 snow stringr ];
-    jaspPower = buildJaspModule "jaspPower" [ pwr jaspBase jaspGraphs ];
-    jaspPredictiveAnalytics = buildJaspModule "jaspPredictiveAnalytics" [ jaspBase jaspGraphs bsts bssm precrec reshape2 Boom lubridate prophet BART EBMAforecast imputeTS ];
-    jaspProcess = buildJaspModule "jaspProcess" [ dagitty ggplot2 ggraph jaspBase jaspGraphs ];
-    jaspProphet = buildJaspModule "jaspProphet" [ rstan ggplot2 jaspBase jaspGraphs prophet scales ];
-    jaspQualityControl = buildJaspModule "jaspQualityControl" [ car cowplot daewr desirability DoE_base EnvStats FAdist fitdistrplus FrF2 ggplot2 ggrepel goftest ggpp irr jaspBase jaspDescriptives jaspGraphs mle_tools psych qcc rsm Rspc tidyr tibble vipor weibullness ];
-    jaspRegression = buildJaspModule "jaspRegression" [ BAS boot bstats combinat emmeans ggplot2 ggrepel hmeasure jaspAnova jaspBase jaspDescriptives jaspGraphs jaspTTests lmtest logistf MASS matrixStats mdscore ppcor purrr Rcpp statmod VGAM ];
-    jaspReliability = buildJaspModule "jaspReliability" [ Bayesrel coda ggplot2 ggridges irr jaspBase jaspGraphs LaplacesDemon lme4 MASS psych ];
-    jaspRobustTTests = buildJaspModule "jaspRobustTTests" [ RoBTT ggplot2 jaspBase jaspGraphs ];
-    jaspSem = buildJaspModule "jaspSem" [ forcats ggplot2 jaspBase jaspGraphs lavaan cSEM reshape2 semPlot semTools stringr tibble tidyr ];
-    jaspSummaryStatistics = buildJaspModule "jaspSummaryStatistics" [ BayesFactor bstats jaspBase jaspFrequencies jaspGraphs jaspRegression jaspTTests jaspAnova jaspDescriptives SuppDists bayesplay ];
-    jaspSurvival = buildJaspModule "jaspSurvival" [ survival survminer jaspBase jaspGraphs ];
-    jaspTTests = buildJaspModule "jaspTTests" [ BayesFactor car ggplot2 jaspBase jaspGraphs logspline plotrix plyr ];
-    jaspTimeSeries = buildJaspModule "jaspTimeSeries" [ jaspBase jaspGraphs forecast ];
-    jaspVisualModeling = buildJaspModule "jaspVisualModeling" [ flexplot jaspBase jaspGraphs ];
+    jaspAcceptanceSampling = buildJaspModule "jaspAcceptanceSampling" [
+      abtest
+      BayesFactor
+      conting'
+      ggplot2
+      jaspBase
+      jaspGraphs
+      plyr
+      stringr
+      vcd
+      vcdExtra
+      AcceptanceSampling
+    ];
+    jaspAnova = buildJaspModule "jaspAnova" [
+      afex
+      BayesFactor
+      boot
+      car
+      colorspace
+      emmeans
+      effectsize
+      ggplot2
+      jaspBase
+      jaspDescriptives
+      jaspGraphs
+      jaspTTests
+      KernSmooth
+      matrixStats
+      multcomp
+      multcompView
+      mvShapiroTest
+      onewaytests
+      plyr
+      stringi
+      stringr
+      restriktor
+    ];
+    jaspAudit = buildJaspModule "jaspAudit" [
+      bstats
+      extraDistr
+      ggplot2
+      ggrepel
+      jaspBase
+      jaspGraphs
+      jfa
+    ];
+    jaspBain = buildJaspModule "jaspBain" [
+      bain
+      lavaan
+      ggplot2
+      semPlot
+      stringr
+      jaspBase
+      jaspGraphs
+      jaspSem
+    ];
+    jaspBsts = buildJaspModule "jaspBsts" [
+      Boom
+      bsts
+      ggplot2
+      jaspBase
+      jaspGraphs
+      matrixStats
+      reshape2
+    ];
+    jaspCircular = buildJaspModule "jaspCircular" [
+      jaspBase
+      jaspGraphs
+      circular
+      ggplot2
+    ];
+    jaspCochrane = buildJaspModule "jaspCochrane" [
+      jaspBase
+      jaspGraphs
+      jaspDescriptives
+      jaspMetaAnalysis
+    ];
+    jaspDescriptives = buildJaspModule "jaspDescriptives" [
+      ggplot2
+      ggrepel
+      jaspBase
+      jaspGraphs
+      jaspTTests
+      forecast
+      flexplot
+      ggrain
+      ggpp
+      ggtext
+      dplyr
+    ];
+    jaspDistributions = buildJaspModule "jaspDistributions" [
+      car
+      fitdistrplus
+      ggplot2
+      goftest
+      gnorm
+      jaspBase
+      jaspGraphs
+      MASS
+      sgt
+      sn
+    ];
+    jaspEquivalenceTTests = buildJaspModule "jaspEquivalenceTTests" [
+      BayesFactor
+      ggplot2
+      jaspBase
+      jaspGraphs
+      metaBMA
+      TOSTER
+      jaspTTests
+    ];
+    jaspFactor = buildJaspModule "jaspFactor" [
+      ggplot2
+      jaspBase
+      jaspGraphs
+      jaspSem
+      lavaan
+      psych
+      qgraph
+      reshape2
+      semPlot
+      GPArotation
+      Rcsdp
+      semTools
+    ];
+    jaspFrequencies = buildJaspModule "jaspFrequencies" [
+      abtest
+      BayesFactor
+      bridgesampling
+      conting'
+      multibridge
+      ggplot2
+      jaspBase
+      jaspGraphs
+      plyr
+      stringr
+      vcd
+      vcdExtra
+    ];
+    jaspJags = buildJaspModule "jaspJags" [
+      coda
+      ggplot2
+      ggtext
+      hexbin
+      jaspBase
+      jaspGraphs
+      rjags
+      runjags
+      scales
+      stringr
+    ];
+    jaspLearnBayes = buildJaspModule "jaspLearnBayes" [
+      extraDistr
+      ggplot2
+      HDInterval
+      jaspBase
+      jaspGraphs
+      MASS
+      MCMCpack
+      MGLM
+      scales
+      ggalluvial
+      ragg
+      rjags
+      runjags
+      ggdist
+      png
+      posterior
+    ];
+    jaspLearnStats = buildJaspModule "jaspLearnStats" [
+      extraDistr
+      ggplot2
+      jaspBase
+      jaspGraphs
+      jaspDistributions
+      jaspDescriptives
+      jaspTTests
+      ggforce
+      tidyr
+      igraph
+    ];
+    jaspMachineLearning = buildJaspModule "jaspMachineLearning" [
+      kknn
+      AUC
+      cluster
+      colorspace
+      DALEX
+      dbscan
+      e1071
+      fpc
+      gbm
+      Gmedian
+      ggparty
+      ggdendro
+      ggnetwork
+      ggplot2
+      ggrepel
+      ggridges
+      glmnet
+      jaspBase
+      jaspGraphs
+      MASS
+      mvnormalTest
+      neuralnet
+      network
+      partykit
+      plyr
+      randomForest
+      rpart
+      ROCR
+      Rtsne
+      signal
+    ];
+    jaspMetaAnalysis = buildJaspModule "jaspMetaAnalysis" [
+      dplyr
+      ggplot2
+      jaspBase
+      jaspGraphs
+      MASS
+      metaBMA
+      metafor
+      psych
+      purrr
+      rstan
+      stringr
+      tibble
+      tidyr
+      weightr
+      BayesTools
+      RoBMA
+      metamisc
+      ggmcmc
+      pema
+    ];
+    jaspMixedModels = buildJaspModule "jaspMixedModels" [
+      afex
+      emmeans
+      ggplot2
+      ggpol
+      jaspBase
+      jaspGraphs
+      lme4
+      loo
+      mgcv
+      rstan
+      rstanarm
+      stanova
+      withr
+    ];
+    jaspNetwork = buildJaspModule "jaspNetwork" [
+      bootnet
+      BDgraph
+      corpcor
+      dplyr
+      foreach
+      ggplot2
+      gtools
+      HDInterval
+      huge
+      IsingSampler
+      jaspBase
+      jaspGraphs
+      mvtnorm
+      qgraph
+      reshape2
+      snow
+      stringr
+    ];
+    jaspPower = buildJaspModule "jaspPower" [
+      pwr
+      jaspBase
+      jaspGraphs
+    ];
+    jaspPredictiveAnalytics = buildJaspModule "jaspPredictiveAnalytics" [
+      jaspBase
+      jaspGraphs
+      bsts
+      bssm
+      precrec
+      reshape2
+      Boom
+      lubridate
+      prophet
+      BART
+      EBMAforecast
+      imputeTS
+    ];
+    jaspProcess = buildJaspModule "jaspProcess" [
+      blavaan
+      dagitty
+      ggplot2
+      ggraph
+      jaspBase
+      jaspGraphs
+      jaspJags
+      runjags
+    ];
+    jaspProphet = buildJaspModule "jaspProphet" [
+      rstan
+      ggplot2
+      jaspBase
+      jaspGraphs
+      prophet
+      scales
+    ];
+    jaspQualityControl = buildJaspModule "jaspQualityControl" [
+      car
+      cowplot
+      daewr
+      desirability
+      DoE_base
+      EnvStats
+      FAdist
+      fitdistrplus
+      FrF2
+      ggplot2
+      ggrepel
+      goftest
+      ggpp
+      irr
+      jaspBase
+      jaspDescriptives
+      jaspGraphs
+      mle_tools
+      psych
+      qcc
+      rsm
+      Rspc
+      tidyr
+      tibble
+      vipor
+      weibullness
+    ];
+    jaspRegression = buildJaspModule "jaspRegression" [
+      BAS
+      boot
+      bstats
+      combinat
+      emmeans
+      ggplot2
+      ggrepel
+      hmeasure
+      jaspAnova
+      jaspBase
+      jaspDescriptives
+      jaspGraphs
+      jaspTTests
+      lmtest
+      logistf
+      MASS
+      matrixStats
+      mdscore
+      ppcor
+      purrr
+      Rcpp
+      statmod
+      VGAM
+    ];
+    jaspReliability = buildJaspModule "jaspReliability" [
+      Bayesrel
+      coda
+      ggplot2
+      ggridges
+      irr
+      jaspBase
+      jaspGraphs
+      LaplacesDemon
+      lme4
+      MASS
+      psych
+    ];
+    jaspRobustTTests = buildJaspModule "jaspRobustTTests" [
+      RoBTT
+      ggplot2
+      jaspBase
+      jaspGraphs
+    ];
+    jaspSem = buildJaspModule "jaspSem" [
+      forcats
+      ggplot2
+      jaspBase
+      jaspGraphs
+      lavaan
+      cSEM
+      reshape2
+      semPlot
+      semTools
+      stringr
+      tibble
+      tidyr
+    ];
+    jaspSummaryStatistics = buildJaspModule "jaspSummaryStatistics" [
+      BayesFactor
+      bstats
+      jaspBase
+      jaspFrequencies
+      jaspGraphs
+      jaspRegression
+      jaspTTests
+      jaspAnova
+      jaspDescriptives
+      SuppDists
+      bayesplay
+    ];
+    jaspSurvival = buildJaspModule "jaspSurvival" [
+      survival
+      survminer
+      jaspBase
+      jaspGraphs
+    ];
+    jaspTTests = buildJaspModule "jaspTTests" [
+      BayesFactor
+      car
+      ggplot2
+      jaspBase
+      jaspGraphs
+      logspline
+      plotrix
+      plyr
+    ];
+    jaspTimeSeries = buildJaspModule "jaspTimeSeries" [
+      jaspBase
+      jaspGraphs
+      jaspDescriptives
+      forecast
+    ];
+    jaspVisualModeling = buildJaspModule "jaspVisualModeling" [
+      flexplot
+      jaspBase
+      jaspGraphs
+      jaspDescriptives
+    ];
  };
 }
--- a/pkgs/by-name/ja/jasp-desktop/package.nix
+++ b/pkgs/by-name/ja/jasp-desktop/package.nix
@ -1,36 +1,39 @@
-{ lib
-, stdenv
-, fetchFromGitHub
-, callPackage
-, buildEnv
-, linkFarm
-, substituteAll
-, R
-, rPackages
-, cmake
-, ninja
-, pkg-config
-, boost
-, libarchive
-, readstat
-, qt6
+{
+  lib,
+  stdenv,
+  fetchFromGitHub,
+  buildEnv,
+  linkFarm,
+  substituteAll,
+  R,
+  rPackages,
+  cmake,
+  ninja,
+  pkg-config,
+  boost,
+  libarchive,
+  readstat,
+  qt6,
 }:

 let
-  version = "0.18.3";
+  version = "0.19.0";

  src = fetchFromGitHub {
    owner = "jasp-stats";
    repo = "jasp-desktop";
    rev = "v${version}";
-    hash = "sha256-eKBxCIamNhUig+0vUEqXYbPjiaOsZk6QnOw8cnpjKFY=";
+    hash = "sha256-G84bmR+40W9RV+OIXYuMmwdEFE0iPMp/wEOcRHYUoj8=";
    fetchSubmodules = true;
  };

-  inherit (callPackage ./modules.nix {
+  moduleSet = import ./modules.nix {
+    inherit fetchFromGitHub rPackages;
    jasp-src = src;
    jasp-version = version;
-  }) engine modules;
+  };
+
+  inherit (moduleSet) engine modules;

  # Merges ${R}/lib/R with all used R packages (even propagated ones)
  customREnv = buildEnv {
@ -42,8 +45,12 @@ let
    ] ++ lib.attrValues modules;
  };

-  modulesDir = linkFarm "jasp-${version}-modules"
-    (lib.mapAttrsToList (name: drv: { name = name; path = "${drv}/library"; }) modules);
+  modulesDir = linkFarm "jasp-${version}-modules" (
+    lib.mapAttrsToList (name: drv: {
+      name = name;
+      path = "${drv}/library";
+    }) modules
+  );
 in
 stdenv.mkDerivation {
  pname = "jasp-desktop";
@ -66,9 +73,6 @@ stdenv.mkDerivation {
    "-DCUSTOM_R_PATH=${customREnv}"
  ];

-  # necessary for R 4.4.0
-  hardeningDisable = [ "format" ];
-
  nativeBuildInputs = [
    cmake
    ninja
@ -81,13 +85,12 @@ stdenv.mkDerivation {
    boost
    libarchive
    readstat
-  ] ++ (with qt6; [
-    qtbase
-    qtdeclarative
-    qtwebengine
-    qtsvg
-    qt5compat
-  ]);
+    qt6.qtbase
+    qt6.qtdeclarative
+    qt6.qtwebengine
+    qt6.qtsvg
+    qt6.qt5compat
+  ];

  env.NIX_LDFLAGS = "-L${rPackages.RInside}/library/RInside/lib";

@ -98,7 +101,7 @@ stdenv.mkDerivation {
    # Remove flatpak proxy script
    rm $out/bin/org.jaspstats.JASP
    substituteInPlace $out/share/applications/org.jaspstats.JASP.desktop \
-        --replace "Exec=org.jaspstats.JASP" "Exec=JASP"
+        --replace-fail "Exec=org.jaspstats.JASP" "Exec=JASP"

    # symlink modules from the store
    ln -s ${modulesDir} $out/Modules
@ -121,4 +124,3 @@ stdenv.mkDerivation {
    platforms = lib.platforms.linux;
  };
 }
-
--- a/pkgs/by-name/ke/keymapp/package.nix
+++ b/pkgs/by-name/ke/keymapp/package.nix
@ -25,11 +25,11 @@ let
 in
 stdenv.mkDerivation rec {
  pname = "keymapp";
-  version = "1.3.0";
+  version = "1.3.1";

  src = fetchurl {
    url = "https://oryx.nyc3.cdn.digitaloceanspaces.com/keymapp/keymapp-${version}.tar.gz";
-    hash = "sha256-kl/2faWbn1sF7AzgkyM6C9xzXTYh8HJf81xIY4Zf3IY=";
+    hash = "sha256-e02EOJH7QXm8ue7pZt++tyUjAC+DFga4MWNoeVfJjy8=";
  };

  nativeBuildInputs = [
--- a/pkgs/by-name/me/melonDS/package.nix
+++ b/pkgs/by-name/me/melonDS/package.nix
@ -20,6 +20,7 @@ let
  inherit (qt6)
    qtbase
    qtmultimedia
+    qtwayland
    wrapQtAppsHook;
 in
 stdenv.mkDerivation (finalAttrs: {
@ -50,6 +51,7 @@ stdenv.mkDerivation (finalAttrs: {
    zstd
  ] ++ lib.optionals stdenv.isLinux [
    wayland
+    qtwayland
  ];

  cmakeFlags = [
--- a/pkgs/by-name/pc/pcsx2-bin/package.nix
+++ b/pkgs/by-name/pc/pcsx2-bin/package.nix
@ -32,16 +32,22 @@ stdenvNoCC.mkDerivation (finalAttrs: {
    runHook postInstall
  '';

+  passthru = {
+    updateScript = ./update.sh;
+  };
+
  meta = {
-    inherit (pcsx2.meta) homepage longDescription license changelog downloadPage;
+    inherit (pcsx2.meta)
+      homepage
+      longDescription
+      license
+      changelog
+      downloadPage
+      ;
    description = "Playstation 2 emulator; precompiled binary for MacOS, repacked from official website";
-    maintainers = with lib.maintainers; [
-      matteopacini
-    ];
+    maintainers = with lib.maintainers; [ matteopacini ];
    mainProgram = "pcsx2-qt";
-    platforms = lib.systems.inspect.patternLogicalAnd
-      lib.systems.inspect.patterns.isDarwin
-      lib.systems.inspect.patterns.isx86_64;
+    platforms = lib.systems.inspect.patternLogicalAnd lib.systems.inspect.patterns.isDarwin lib.systems.inspect.patterns.isx86_64;
    sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ];
  };
 })
--- a/pkgs/by-name/pc/pcsx2-bin/update.sh
+++ b/pkgs/by-name/pc/pcsx2-bin/update.sh
@ -0,0 +1,8 @@
+#!/usr/bin/env nix-shell
+#!nix-shell -i bash -p curl jq gnused common-updater-scripts
+
+set -eou pipefail
+
+LATEST_VERSION="$(curl --silent --fail ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/PCSX2/pcsx2/releases" | jq '.[0].tag_name' --raw-output | sed 's/^v//')"
+
+update-source-version pcsx2-bin "$LATEST_VERSION"
--- a/pkgs/by-name/sa/sarif-fmt/package.nix
+++ b/pkgs/by-name/sa/sarif-fmt/package.nix
@ -1,51 +1,42 @@
 {
  lib,
  stdenv,
-  fetchFromGitHub,
+  fetchCrate,
  rustPlatform,
-  clippy,
-  sarif-fmt,
-  testers,
+  nix-update-script,
+  versionCheckHook,
 }:
 rustPlatform.buildRustPackage rec {
  pname = "sarif-fmt";
-  version = "0.4.2";
+  version = "0.5.0";

-  src = fetchFromGitHub {
-    owner = "psastras";
-    repo = "sarif-rs";
-    rev = "sarif-fmt-v${version}";
-    hash = "sha256-EzWzDeIeSJ11CVcVyAhMjYQJcKHnieRrFkULc5eXAno=";
+  src = fetchCrate {
+    inherit pname version;
+    hash = "sha256-QiIAo9q8pcon/Os7ih8jJyDLvKPrLD70LkMAQfgwDNM=";
  };

-  cargoHash = "sha256-dHOxVLXtnqSHMX5r1wFxqogDf9QdnOZOjTyYFahru34=";
-  cargoBuildFlags = [
-    "--package"
-    "sarif-fmt"
-  ];
-  cargoTestFlags = cargoBuildFlags;
+  cargoHash = "sha256-RlINf/8P+OpZffvqbkKoafeolioDGABWS71kpGcX/cs=";

  # `test_clippy` (the only test we enable) is broken on Darwin
  # because `--enable-profiler` is not enabled in rustc on Darwin
  # error[E0463]: can't find crate for profiler_builtins
  doCheck = !stdenv.isDarwin;

-  nativeCheckInputs = [
-    # `test_clippy`
-    clippy
+  checkFlags = [
+    # these tests use nix so...no go
+    "--skip=test_clang_tidy"
+    "--skip=test_hadolint"
+    "--skip=test_shellcheck"
+
+    # requires files not present in the crates.io tarball
+    "--skip=test_clipp"
  ];

-  checkFlags = [
-    # this test uses nix so...no go
-    "--skip=test_clang_tidy"
-    # ditto
-    "--skip=test_hadolint"
-    # ditto
-    "--skip=test_shellcheck"
-  ];
+  nativeInstallCheckInputs = [ versionCheckHook ];
+  doInstallCheck = true;

  passthru = {
-    tests.version = testers.testVersion { package = sarif-fmt; };
+    updateScript = nix-update-script { };
  };

  meta = {
--- a/pkgs/by-name/sh/shellcheck-sarif/package.nix
+++ b/pkgs/by-name/sh/shellcheck-sarif/package.nix
@ -1,37 +1,33 @@
 {
  lib,
-  fetchFromGitHub,
+  fetchCrate,
  rustPlatform,
-  shellcheck-sarif,
-  testers,
+  nix-update-script,
+  versionCheckHook,
 }:
 rustPlatform.buildRustPackage rec {
  pname = "shellcheck-sarif";
-  version = "0.4.2";
+  version = "0.5.0";

-  src = fetchFromGitHub {
-    owner = "psastras";
-    repo = "sarif-rs";
-    rev = "shellcheck-sarif-v${version}";
-    hash = "sha256-EzWzDeIeSJ11CVcVyAhMjYQJcKHnieRrFkULc5eXAno=";
+  src = fetchCrate {
+    inherit pname version;
+    hash = "sha256-PFMakiV9vXzMqVh1WeVTDwGpN7RVfFQlVWKkaD6ef+Q=";
  };

-  cargoHash = "sha256-JuE/Z0qrS/3BRlb0jTGDfV0TYk74Q75X1wv/IERxqeQ=";
-  cargoBuildFlags = [
-    "--package"
-    "shellcheck-sarif"
-  ];
-  cargoTestFlags = cargoBuildFlags;
+  cargoHash = "sha256-kkSTRoouuIh4Bsh+zqhtTwIGLxDE+3u8SuP+8i+lw5Q=";
+
+  nativeInstallCheckInputs = [ versionCheckHook ];
+  doInstallCheck = true;

  passthru = {
-    tests.version = testers.testVersion { package = shellcheck-sarif; };
+    updateScript = nix-update-script { };
  };

  meta = {
    description = "CLI tool to convert shellcheck diagnostics into SARIF";
    homepage = "https://psastras.github.io/sarif-rs";
-    mainProgram = "shellcheck-sarif";
-    maintainers = with lib.maintainers; [ getchoo ];
    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ getchoo ];
+    mainProgram = "shellcheck-sarif";
  };
 }
--- a/pkgs/by-name/sn/snippetexpander/package.nix
+++ b/pkgs/by-name/sn/snippetexpander/package.nix
@ -12,7 +12,7 @@ buildGoModule rec {

  pname = "snippetexpander";

-  vendorHash = "sha256-W9NkENdZRzqSAONI9QS2EI5aERK+AaPqwYwITKLwXQE=";
+  vendorHash = "sha256-2nLO/b6XQC88VXE+SewhgKpkRtIHsva+fDudgKpvZiY=";

  proxyVendor = true;

--- a/pkgs/by-name/sn/snippetexpanderd/package.nix
+++ b/pkgs/by-name/sn/snippetexpanderd/package.nix
@ -12,16 +12,16 @@

 buildGoModule rec {
  pname = "snippetexpanderd";
-  version = "1.0.2";
+  version = "1.0.3";

  src = fetchFromSourcehut {
    owner = "~ianmjones";
    repo = "snippetexpander";
    rev = "v${version}";
-    hash = "sha256-iEoBri+NuFfLkARUBA+D/Fe9xk6PPV62N/YRqPv9C/A=";
+    hash = "sha256-NIMuACrq8RodtjeBbBY42VJ8xqj7fZvdQ2w/5QsjjJI=";
  };

-  vendorHash = "sha256-W9NkENdZRzqSAONI9QS2EI5aERK+AaPqwYwITKLwXQE=";
+  vendorHash = "sha256-2nLO/b6XQC88VXE+SewhgKpkRtIHsva+fDudgKpvZiY=";

  proxyVendor = true;

--- a/pkgs/by-name/sn/snippetexpandergui/package.nix
+++ b/pkgs/by-name/sn/snippetexpandergui/package.nix
@ -17,7 +17,7 @@ buildGoModule rec {

  pname = "snippetexpandergui";

-  vendorHash = "sha256-W9NkENdZRzqSAONI9QS2EI5aERK+AaPqwYwITKLwXQE=";
+  vendorHash = "sha256-2nLO/b6XQC88VXE+SewhgKpkRtIHsva+fDudgKpvZiY=";

  proxyVendor = true;

--- a/pkgs/by-name/sp/spade/Cargo.lock
+++ b/pkgs/by-name/sp/spade/Cargo.lock
--- a/pkgs/by-name/sp/spade/package.nix
+++ b/pkgs/by-name/sp/spade/package.nix
@ -9,13 +9,13 @@

 rustPlatform.buildRustPackage rec {
  pname = "spade";
-  version = "0.8.0";
+  version = "0.9.0";

  src = fetchFromGitLab {
    owner = "spade-lang";
    repo = "spade";
    rev = "v${version}";
-    hash = "sha256-J3AdXuN1WLKFED9YeBly68umPlx05Wl+mhT2YbBsJVk=";
+    hash = "sha256-DVvdCt/t7aA2IAs+cL6wT129PX8s3P5gHawcLAvAAGw=";
    # only needed for vatch, which contains test data
    fetchSubmodules = true;
  };
@ -24,7 +24,6 @@ rustPlatform.buildRustPackage rec {
    lockFile = ./Cargo.lock;
    outputHashes = {
      "codespan-0.12.0" = "sha256-3F2006BR3hyhxcUTaQiOjzTEuRECKJKjIDyXonS/lrE=";
-      "tracing-tree-0.2.0" = "sha256-/JNeAKjAXmKPh0et8958yS7joORDbid9dhFB0VUAhZc=";
    };
  };

--- a/pkgs/by-name/xw/xwayland-satellite/package.nix
+++ b/pkgs/by-name/xw/xwayland-satellite/package.nix
@ -6,6 +6,7 @@
 , xcb-util-cursor
 , libxcb
 , nix-update-script
+, makeWrapper
 }:

 rustPlatform.buildRustPackage rec {
@ -24,10 +25,10 @@ rustPlatform.buildRustPackage rec {
  nativeBuildInputs = [
    pkg-config
    rustPlatform.bindgenHook
+    makeWrapper
  ];

  buildInputs = [
-    xwayland
    libxcb
    xcb-util-cursor
  ];
@ -43,13 +44,18 @@ rustPlatform.buildRustPackage rec {
    "--skip=toplevel_flow"
  ];

+  postInstall = ''
+    wrapProgram $out/bin/xwayland-satellite \
+      --prefix PATH : "${lib.makeBinPath [xwayland]}"
+  '';
+
  passthru.updateScript = nix-update-script { };

  meta = with lib; {
    description = "Rootless Xwayland integration to any Wayland compositor implementing xdg_wm_base";
    homepage = "https://github.com/Supreeeme/xwayland-satellite";
    license = licenses.mpl20;
-    maintainers = with maintainers; [ if-loop69420 ];
+    maintainers = with maintainers; [ if-loop69420 sodiboo ];
    mainProgram = "xwayland-satellite";
    platforms = platforms.linux;
  };
--- a/pkgs/desktops/cinnamon/nemo/default.nix
+++ b/pkgs/desktops/cinnamon/nemo/default.nix
@ -24,13 +24,13 @@

 stdenv.mkDerivation rec {
  pname = "nemo";
-  version = "6.2.3";
+  version = "6.2.4";

  src = fetchFromGitHub {
    owner = "linuxmint";
    repo = pname;
    rev = version;
-    sha256 = "sha256-wyz2pzwJGYMFKoKVqrhLnkJqXG8Qg2+BygpOm2yegpM=";
+    sha256 = "sha256-mlu/bC1+2rhEQvqIAcTBgYii8t4ELsLc1x0ApcBqx6o=";
  };

  patches = [
--- a/pkgs/development/interpreters/wamr/default.nix
+++ b/pkgs/development/interpreters/wamr/default.nix
@ -6,13 +6,13 @@

 stdenv.mkDerivation (finalAttrs: {
  pname = "wamr";
-  version = "2.1.0";
+  version = "2.1.1";

  src = fetchFromGitHub {
    owner = "bytecodealliance";
    repo = "wasm-micro-runtime";
    rev = "WAMR-${finalAttrs.version}";
-    hash = "sha256-2jZnvfW/f928DxVwd+z/BVPNPWfbyV8Rjek23NQhFz8=";
+    hash = "sha256-/DQ+dZ3VoijL7FdgRgPg3H7whhXhjIzjhCaqpjPYw4k=";
  };

  nativeBuildInputs = [ cmake ];
--- a/pkgs/development/libraries/libsolv/default.nix
+++ b/pkgs/development/libraries/libsolv/default.nix
@ -17,14 +17,14 @@
 }:

 stdenv.mkDerivation rec {
-  version = "0.7.29";
+  version = "0.7.30";
  pname = "libsolv";

  src = fetchFromGitHub {
    owner = "openSUSE";
    repo = "libsolv";
    rev = version;
-    hash = "sha256-867sCGFvKib1As9BCiCi6LYVrLUK0pjtM5Bw9Yuu0D8=";
+    hash = "sha256-De2lQu80MjKvjnN0W3/Y9JwFbA8g7tleflVXC9Lib5Y=";
  };

  cmakeFlags = [
--- a/pkgs/development/libraries/rinutils/default.nix
+++ b/pkgs/development/libraries/rinutils/default.nix
@ -7,11 +7,11 @@

 stdenv.mkDerivation rec {
  pname = "rinutils";
-  version = "0.10.2";
+  version = "0.10.3";

  src = fetchurl {
    url = "https://github.com/shlomif/${pname}/releases/download/${version}/${pname}-${version}.tar.xz";
-    sha256 = "sha256-2H/hGZcit/qb1QjhNTg/8HiPvX1lXL75dXwjIS+MIXs=";
+    sha256 = "sha256-+eUn03psyMe4hwraY8qiTzKrDSn9ERbfPrtoZYMDCVU=";
  };

  nativeBuildInputs = [ cmake perl ];
--- a/pkgs/development/python-modules/dbt-semantic-interfaces/default.nix
+++ b/pkgs/development/python-modules/dbt-semantic-interfaces/default.nix
@ -20,7 +20,7 @@

 buildPythonPackage rec {
  pname = "dbt-semantic-interfaces";
-  version = "0.6.0";
+  version = "0.6.2";
  pyproject = true;

  disabled = pythonOlder "3.8";
@ -29,7 +29,7 @@ buildPythonPackage rec {
    owner = "dbt-labs";
    repo = "dbt-semantic-interfaces";
    rev = "refs/tags/v${version}";
-    hash = "sha256-77WKfegchgHIxgzL3Yhtx/4S5pYi6HeVCQH/19YscWA=";
+    hash = "sha256-V6yMT9Fkug+T3smBEu0Szg5GPMRxEOZc4gtJybWXbrs=";
  };

  pythonRelaxDeps = [ "importlib-metadata" ];
--- a/pkgs/development/python-modules/django-crispy-forms/default.nix
+++ b/pkgs/development/python-modules/django-crispy-forms/default.nix
@ -10,14 +10,14 @@

 buildPythonPackage rec {
  pname = "django-crispy-forms";
-  version = "2.2";
+  version = "2.3";
  format = "pyproject";

  src = fetchFromGitHub {
    owner = "django-crispy-forms";
    repo = "django-crispy-forms";
    rev = "refs/tags/${version}";
-    hash = "sha256-6S/Pscwi6AEQnmJf6JTT5Q5vxoZ3PC65ZjT2XszwVZM=";
+    hash = "sha256-R2s2dUsVw5p7xn4yWeFcE7au8yHWXjFgS5jjCBveg04=";
  };

  propagatedBuildInputs = [
--- a/pkgs/development/python-modules/manhole/default.nix
+++ b/pkgs/development/python-modules/manhole/default.nix
@ -9,12 +9,12 @@

 buildPythonPackage rec {
  pname = "manhole";
-  version = "1.8.0";
+  version = "1.8.1";
  format = "setuptools";

  src = fetchPypi {
    inherit pname version;
-    sha256 = "bada20a25b547b395d472e2e08928f0437df26bbdbda4797c55863198e29a21f";
+    sha256 = "sha256-Nmj9r4OzPJQ9tOdQ4MVU4xwg9jM4SWiV3U1kEGgNnEs=";
  };

  # test_help expects architecture-dependent Linux signal numbers.
--- a/pkgs/development/python-modules/mayavi/default.nix
+++ b/pkgs/development/python-modules/mayavi/default.nix
@ -4,7 +4,6 @@
  buildPythonPackage,
  envisage,
  fetchPypi,
-  fetchpatch,
  numpy,
  packaging,
  pyface,
@ -19,7 +18,6 @@

 buildPythonPackage rec {
  pname = "mayavi";
-  # TODO: Remove meta.broken on next release.
  version = "4.8.2";
  format = "setuptools";

@ -30,30 +28,6 @@ buildPythonPackage rec {
    hash = "sha256-sQ/pFF8hxI5JAvDnRrNgOzy2lNEUVlFaRoIPIaCnQik=";
  };

-  patches = [
-    # Adds compatibility with Python 3.11.
-    # https://github.com/enthought/mayavi/pull/1199
-    (fetchpatch {
-      name = "python311-compat.patch";
-      url = "https://github.com/enthought/mayavi/commit/50c0cbfcf97560be69c84b7c924635a558ebf92f.patch";
-      hash = "sha256-zZOT6on/f5cEjnDBrNGog/wPQh7rBkaFqrxkBYDUQu0=";
-      includes = [ "tvtk/src/*" ];
-    })
-    # Fixes an incompatible function pointer conversion error
-    # https://github.com/enthought/mayavi/pull/1266
-    (fetchpatch {
-      name = "incompatible-pointer-conversion.patch";
-      url = "https://github.com/enthought/mayavi/commit/887adc8fe2b076a368070f5b1d564745b03b1964.patch";
-      hash = "sha256-88H1NNotd4pO0Zw1oLrYk5WNuuVrmTU01HJgsTRfKlo=";
-    })
-  ];
-
-  postPatch = ''
-    # building the docs fails with the usual Qt xcb error, so skip:
-    substituteInPlace setup.py \
-      --replace "build.build.run(self)" "build.build.run(self); return"
-  '';
-
  nativeBuildInputs = [ wrapQtAppsHook ];

  propagatedBuildInputs = [
@ -84,8 +58,6 @@ buildPythonPackage rec {
    homepage = "https://github.com/enthought/mayavi";
    license = licenses.bsdOriginal;
    maintainers = with maintainers; [ knedlsepp ];
-    # Should be fixed in a version from after March 26, see:
-    # https://github.com/enthought/mayavi/issues/1284#issuecomment-2020631244
-    broken = pythonAtLeast "3.12";
+    mainProgram = "mayavi2";
  };
 }
--- a/pkgs/development/python-modules/molecule/default.nix
+++ b/pkgs/development/python-modules/molecule/default.nix
@ -23,14 +23,14 @@

 buildPythonPackage rec {
  pname = "molecule";
-  version = "24.6.1";
+  version = "24.7.0";
  pyproject = true;

  disabled = pythonOlder "3.10";

  src = fetchPypi {
    inherit pname version;
-    hash = "sha256-QcGQOllyl8JgK9BZ4Qe17y4yydokeX3LeP+Yc8ZhXuY=";
+    hash = "sha256-2yx/pZkj6b8j1hqSpbGdaIHsnuX+lu2enp1wCwJyPwM=";
  };

  nativeBuildInputs = [
--- a/pkgs/development/python-modules/whenever/default.nix
+++ b/pkgs/development/python-modules/whenever/default.nix
@ -1,11 +1,15 @@
 {
  lib,
+  stdenv,
  fetchFromGitHub,
  pythonOlder,
+  rustPlatform,
+  cargo,
+  rustc,
+  libiconv,
  buildPythonPackage,
-  poetry-core,
-  backports-zoneinfo,
-  tzdata,
+  setuptools,
+  setuptools-rust,
  pytestCheckHook,
  pytest-mypy-plugins,
  hypothesis,
@ -14,38 +18,54 @@

 buildPythonPackage rec {
  pname = "whenever";
-  version = "0.5.2";
+  version = "0.6.1";
  pyproject = true;

-  disabled = pythonOlder "3.8";
+  disabled = pythonOlder "3.9";

  src = fetchFromGitHub {
    owner = "ariebovenberg";
    repo = "whenever";
    rev = "refs/tags/${version}";
-    hash = "sha256-bG8LV+r5MjA1JwBHWy9/Io4daldAlyEGYNLW+5ITuOw=";
+    hash = "sha256-uUjQtaqPO/Ie7vVddQhc3dxORX2PxNRaDJzCr+vieUo=";
  };

-  postPatch = ''
-    # unrecognized arguments since we don't use pytest-benchmark in nixpkgs
-    substituteInPlace pytest.ini \
-      --replace-fail '--benchmark-disable' '#--benchmark-disable'
-  '';
+  cargoDeps = rustPlatform.fetchCargoTarball {
+    inherit src;
+    hash = "sha256-8U3pGKY9UQ0JpzUn3Ny6YSD3wzXPDi1pupD5fpEJFvw=";
+  };

-  build-system = [ poetry-core ];
+  build-system = [
+    setuptools
+    setuptools-rust
+    rustPlatform.cargoSetupHook
+    cargo
+    rustc
+  ];

-  dependencies = [ tzdata ] ++ lib.optionals (pythonOlder "3.9") [ backports-zoneinfo ];
+  buildInputs = lib.optionals stdenv.isDarwin [
+    libiconv
+  ];

  nativeCheckInputs = [
    pytestCheckHook
    pytest-mypy-plugins
+    # pytest-benchmark # developer sanity check, should not block distribution
    hypothesis
    freezegun
  ];

+  disabledTestPaths = [
+    # benchmarks
+    "benchmarks/python/test_date.py"
+    "benchmarks/python/test_instant.py"
+    "benchmarks/python/test_local_datetime.py"
+    "benchmarks/python/test_zoned_datetime.py"
+  ];
+
  pythonImportsCheck = [ "whenever" ];

-  # early TDD, many tests are failing
+  # a bunch of failures, including an assumption of what the timezone on the host is
  # TODO: try enabling on bump
  doCheck = false;

--- a/pkgs/development/tools/misc/linuxkit/default.nix
+++ b/pkgs/development/tools/misc/linuxkit/default.nix
@ -2,13 +2,13 @@

 buildGoModule rec {
  pname = "linuxkit";
-  version = "1.2.0";
+  version = "1.3.0";

  src = fetchFromGitHub {
    owner = "linuxkit";
    repo = "linuxkit";
    rev = "v${version}";
-    sha256 = "sha256-PrHGIP74mDt+mJDRaCsroiJ4QEW4/tzgsZI2JlZ8TEA=";
+    sha256 = "sha256-FK8aJGVIVu7nd6VwMlgs9daqr9rgz81OczbcHUGW89w=";
  };

  vendorHash = null;
--- a/pkgs/games/anki/default.nix
+++ b/pkgs/games/anki/default.nix
@ -250,13 +250,26 @@ python3.pkgs.buildPythonApplication {
  '';

  # mimic https://github.com/ankitects/anki/blob/76d8807315fcc2675e7fa44d9ddf3d4608efc487/build/ninja_gen/src/python.rs#L232-L250
-  checkPhase = ''
+  checkPhase = let
+    disabledTestsString = lib.pipe [
+      # assumes / is not writeable, somehow fails on nix-portable brwap
+      "test_create_open"
+    ] [
+      (lib.map (test: "not ${test}"))
+      (lib.concatStringsSep " and ")
+      lib.escapeShellArg
+    ];
+
+  in ''
+    runHook preCheck
    HOME=$TMP ANKI_TEST_MODE=1 PYTHONPATH=$PYTHONPATH:$PWD/out/pylib \
-      pytest -p no:cacheprovider pylib/tests
+      pytest -p no:cacheprovider pylib/tests -k ${disabledTestsString}
    HOME=$TMP ANKI_TEST_MODE=1 PYTHONPATH=$PYTHONPATH:$PWD/out/pylib:$PWD/pylib:$PWD/out/qt \
-      pytest -p no:cacheprovider qt/tests
+      pytest -p no:cacheprovider qt/tests -k ${disabledTestsString}
+    runHook postCheck
  '';

+
  preInstall = ''
    mkdir dist
    mv out/wheels/* dist
--- a/pkgs/games/pioneer/default.nix
+++ b/pkgs/games/pioneer/default.nix
@ -20,13 +20,13 @@

 stdenv.mkDerivation rec {
  pname = "pioneer";
-  version = "20240314";
+  version = "20240710";

  src = fetchFromGitHub{
    owner = "pioneerspacesim";
    repo = "pioneer";
    rev = version;
-    hash = "sha256-CUaiQPRufo8Ng70w5KWlLugySMaTaUuZno/ckyU1w2w=";
+    hash = "sha256-zuPm5odMn6C3JqkgqQdgSztwxWjMmLVWUalYbEbAZro=";
  };

  postPatch = ''
--- a/pkgs/games/tuxpaint/default.nix
+++ b/pkgs/games/tuxpaint/default.nix
@ -25,17 +25,17 @@

 let
  stamps = fetchurl {
-    url = "mirror://sourceforge/project/tuxpaint/tuxpaint-stamps/2023-07-20/tuxpaint-stamps-2023.07.20.tar.gz";
-    hash = "sha256-D7QgYXRRdZpN3Ni/4lXoXCtsJORT+T2hHaLUFpgDeEI=";
+    url = "mirror://sourceforge/project/tuxpaint/tuxpaint-stamps/2024-01-29/tuxpaint-stamps-2024.01.29.tar.gz";
+    hash = "sha256-GwJx9tqaX7I623tJQYO53iiaApZtYsTLQw2ptBIFlKk=";
  };
 in
 stdenv.mkDerivation rec {
-  version = "0.9.31";
+  version = "0.9.32";
  pname = "tuxpaint";

  src = fetchurl {
    url = "mirror://sourceforge/tuxpaint/${version}/tuxpaint-${version}.tar.gz";
-    hash = "sha256-GoXAT6XJrms//Syo+oaoTAyLRitQWfofwsRFtc+oV+4=";
+    hash = "sha256-CcziIkFIHcE2D8S8XU2h0xgV16JWO56fohemcrqXS/I=";
  };

  patches = [
@ -98,7 +98,6 @@ stdenv.mkDerivation rec {
    tar xzf ${stamps}
    cd tuxpaint-stamps-*
    make install-all PREFIX=$out
-    rm -rf $out/share/tuxpaint/stamps/military

    # Requirements for tuxpaint-import
    wrapProgram $out/bin/tuxpaint-import \
--- a/pkgs/misc/scrcpy/default.nix
+++ b/pkgs/misc/scrcpy/default.nix
@ -16,12 +16,12 @@
 }:

 let
-  version = "2.4";
+  version = "2.5";
  prebuilt_server = fetchurl {
    name = "scrcpy-server";
    inherit version;
    url = "https://github.com/Genymobile/scrcpy/releases/download/v${version}/scrcpy-server-v${version}";
-    hash = "sha256-k8Jyt0OGBcBV4Sf3REBk7Xj6nKSfgRVnd/0gHnnOe6M=";
+    hash = "sha256-FIixEF1q/1NIc6Jr9hDNKuoG7oZ916TZxrssCROW6xU=";
  };
 in
 stdenv.mkDerivation rec {
@ -32,7 +32,7 @@ stdenv.mkDerivation rec {
    owner = "Genymobile";
    repo = "scrcpy";
    rev = "refs/tags/v${version}";
-    hash = "sha256-x1feZgCR3ZUi40/YZSjDULYk4W9Pjo17cn8RqcOoeoE=";
+    hash = "sha256-VdZZ23tlWYvDgETfce7kYy/kdwDGBEBzB6UfplorAbE=";
  };

  #   display.c: When run without a hardware accelerator, this allows the command to continue working rather than failing unexpectedly.
@ -63,17 +63,17 @@ stdenv.mkDerivation rec {
      --replace "/bin/bash" "${runtimeShell}"
  '';

-  meta = with lib; {
+  meta = {
    description = "Display and control Android devices over USB or TCP/IP";
    homepage = "https://github.com/Genymobile/scrcpy";
    changelog = "https://github.com/Genymobile/scrcpy/releases/tag/v${version}";
-    sourceProvenance = with sourceTypes; [
+    sourceProvenance = with lib.sourceTypes; [
      fromSource
      binaryBytecode # server
    ];
-    license = licenses.asl20;
-    platforms = platforms.unix;
-    maintainers = with maintainers; [ deltaevo ];
+    license = lib.licenses.asl20;
+    platforms = lib.platforms.unix;
+    maintainers = with lib.maintainers; [ deltaevo ryand56 ];
    mainProgram = "scrcpy";
  };
 }
--- a/pkgs/servers/http/tomcat/default.nix
+++ b/pkgs/servers/http/tomcat/default.nix
@ -1,7 +1,17 @@
-{ stdenvNoCC, lib, fetchurl, nixosTests, testers, jre }:
+{
+  fetchurl,
+  gitUpdater,
+  jre,
+  lib,
+  nixosTests,
+  stdenvNoCC,
+  testers,
+}:

 let
-  common = { version, hash }: stdenvNoCC.mkDerivation (finalAttrs: {
+  common =
+    { version, hash }:
+    stdenvNoCC.mkDerivation (finalAttrs: {
      pname = "apache-tomcat";
      inherit version;

@ -10,41 +20,51 @@ let
        inherit hash;
      };

-    outputs = [ "out" "webapps" ];
-    installPhase =
-      ''
+      outputs = [
+        "out"
+        "webapps"
+      ];
+      installPhase = ''
        mkdir $out
        mv * $out
        mkdir -p $webapps/webapps
        mv $out/webapps $webapps/
      '';

-    passthru.tests = {
+      passthru = {
+        updateScript = gitUpdater {
+          url = "https://github.com/apache/tomcat.git";
+          allowedVersions = "^${lib.versions.major version}\\.";
+          ignoredVersions = "-M.*";
+        };
+        tests = {
          inherit (nixosTests) tomcat;
          version = testers.testVersion {
            package = finalAttrs.finalPackage;
            command = "JAVA_HOME=${jre} ${finalAttrs.finalPackage}/bin/version.sh";
          };
        };
+      };

-    meta = with lib; {
+      meta = {
        homepage = "https://tomcat.apache.org/";
        description = "Implementation of the Java Servlet and JavaServer Pages technologies";
        platforms = jre.meta.platforms;
-      maintainers = with maintainers; [ anthonyroussel ];
-      license = [ licenses.asl20 ];
-      sourceProvenance = with sourceTypes; [ binaryBytecode ];
+        maintainers = with lib.maintainers; [ anthonyroussel ];
+        license = lib.licenses.asl20;
+        sourceProvenance = with lib.sourceTypes; [ binaryBytecode ];
      };
    });

-in {
+in
+{
  tomcat9 = common {
-    version = "9.0.90";
-    hash = "sha256-MYSRxL5DSU5ocrUnfEDKyFBpAddErQnTffYuiFQ/YiM=";
+    version = "9.0.91";
+    hash = "sha256-DFspyh06Mbu4+ratH+7Yo3Au0yXRSDlVCmd0x2yQuFY=";
  };

  tomcat10 = common {
-    version = "10.1.25";
-    hash = "sha256-8SQKMrh5xEWkpEGcm23YdYG9uW+KUfewyhk1Fkux6EI=";
+    version = "10.1.26";
+    hash = "sha256-9z92dgE3gzszBd+xjtF0+H/qw6t49lKJoINahR18/rI=";
  };
 }
--- a/pkgs/servers/nzbhydra2/default.nix
+++ b/pkgs/servers/nzbhydra2/default.nix
@ -9,11 +9,11 @@
 }:
 stdenv.mkDerivation rec {
  pname = "nzbhydra2";
-  version = "7.2.3";
+  version = "7.3.0";

  src = fetchzip {
    url = "https://github.com/theotherp/${pname}/releases/download/v${version}/${pname}-${version}-generic.zip";
-    hash = "sha256-gGTEOqqnVSgsKvEjd6b5aG8EM2M8u0FdpIebYNQFP50=";
+    hash = "sha256-ybI6nCw8yY2XceXiMkION7/p7gl58lrAPpUq6EpManU=";
    stripRoot = false;
  };

@ -37,12 +37,12 @@ stdenv.mkDerivation rec {
    runHook postInstall
  '';

-  meta = with lib; {
+  meta = {
    description = "Usenet meta search";
    homepage = "https://github.com/theotherp/nzbhydra2";
-    license = licenses.asl20;
-    maintainers = with maintainers; [ matteopacini ];
-    platforms = with platforms; linux;
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ matteopacini ];
+    platforms = lib.platforms.linux;
    mainProgram = "nzbhydra2";
  };
 }
--- a/pkgs/tools/admin/rhoas/default.nix
+++ b/pkgs/tools/admin/rhoas/default.nix
@ -1,4 +1,4 @@
-{ lib, buildGoModule, fetchFromGitHub, installShellFiles, testers, rhoas }:
+{ lib, buildGoModule, fetchFromGitHub, stdenv, installShellFiles, testers, rhoas }:

 buildGoModule rec {
  pname = "rhoas";
@ -24,11 +24,11 @@ buildGoModule rec {
  # Networking tests fail.
  doCheck = false;

-  postInstall = ''
+  postInstall = lib.optionalString (stdenv.buildPlatform.canExecute stdenv.hostPlatform) ''
    installShellCompletion --cmd rhoas \
-      --bash <($out/bin/rhoas completion bash) \
-      --fish <($out/bin/rhoas completion fish) \
-      --zsh <($out/bin/rhoas completion zsh)
+      --bash <(HOME=$TMP $out/bin/rhoas completion bash) \
+      --fish <(HOME=$TMP $out/bin/rhoas completion fish) \
+      --zsh <(HOME=$TMP $out/bin/rhoas completion zsh)
  '';

  passthru.tests.version = testers.testVersion {
--- a/pkgs/tools/misc/wasm-tools/default.nix
+++ b/pkgs/tools/misc/wasm-tools/default.nix
@ -5,19 +5,19 @@

 rustPlatform.buildRustPackage rec {
  pname = "wasm-tools";
-  version = "1.213.0";
+  version = "1.214.0";

  src = fetchFromGitHub {
    owner = "bytecodealliance";
    repo = pname;
    rev = "v${version}";
-    hash = "sha256-EuDy1lLh2GhRFkmkfyIdxXRwiCXVfSeQAFTp6peKNh0=";
+    hash = "sha256-YVb1SXwksmhvK6FqsKoT9SB6CglcW6A2/Zt6GXvioF4=";
    fetchSubmodules = true;
  };

  # Disable cargo-auditable until https://github.com/rust-secure-code/cargo-auditable/issues/124 is solved.
  auditable = false;
-  cargoHash = "sha256-g5djZoPYJXJ+AN0BKl6i8wmkGY/dAuie/twkaNcSZ+Q=";
+  cargoHash = "sha256-Mdjsng49/LdNzxZMz5py0thHQ8e786uKuI63rPor3g0=";
  cargoBuildFlags = [ "--package" "wasm-tools" ];
  cargoTestFlags = [ "--all" ];