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pythonPackages.nipy: refactor move to python-modules

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Chris Ostrouchov 2018-10-17 01:00:46 -04:00 committed by Frederik Rietdijk
parent 8d7f629fb4
commit 5f03c01b35
2 changed files with 50 additions and 42 deletions
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49
pkgs/development/python-modules/nipy/default.nix Normal file
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@ -0,0 +1,49 @@
{ stdenv
, buildPythonPackage
, fetchPypi
, pythonOlder
, nose
, matplotlib
, nibabel
, numpy
, scipy
, sympy
, python
}:
buildPythonPackage rec {
version = "0.4.0";
pname = "nipy";
disabled = pythonOlder "2.6";
src = fetchPypi {
inherit pname version;
sha256 = "1hnbn2i4fjxflaaz082s2c57hfp59jfra1zayz1iras5p2dy21nr";
};
buildInputs = stdenv.lib.optional doCheck [ nose ];
propagatedBuildInputs = [ matplotlib nibabel numpy scipy sympy ];
checkPhase = '' # wants to be run in a different directory
mkdir nosetests
cd nosetests
${python.interpreter} -c "import nipy; nipy.test()"
rm -rf .
'';
# failing test:
# nipy.algorithms.statistics.models.tests.test_olsR.test_results(11.593139639404727, 11.593140144880794, 6) # disagrees by 1 at 6th decimal place
# erroring tests:
# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_altprotocol
# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_agreement
# nipy.tests.test_scripts.test_nipy_4d_realign # because `nipy_4d_realign` script isn't found at test time; works from nix-shell, so could be patched
# nipy.tests.test_scripts.test_nipy_3_4d # ditto re.: `nipy_3_4d` script
doCheck = false;
meta = with stdenv.lib; {
homepage = http://nipy.org/nipy/;
description = "Software for structural and functional neuroimaging analysis";
license = licenses.bsd3;
};
}

43
pkgs/top-level/python-packages.nix
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@ -2967,48 +2967,7 @@ in {
nimfa = callPackage ../development/python-modules/nimfa {};
nipy = buildPythonPackage rec {
version = "0.4.0";
name = "nipy-${version}";
disabled = pythonOlder "2.6";
checkPhase = '' # wants to be run in a different directory
mkdir nosetests
cd nosetests
${python.interpreter} -c "import nipy; nipy.test()"
rm -rf .
'';
# failing test:
# nipy.algorithms.statistics.models.tests.test_olsR.test_results(11.593139639404727, 11.593140144880794, 6) # disagrees by 1 at 6th decimal place
# erroring tests:
# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_altprotocol
# nipy.modalities.fmri.fmristat.tests.test_FIAC.test_agreement
# nipy.tests.test_scripts.test_nipy_4d_realign # because `nipy_4d_realign` script isn't found at test time; works from nix-shell, so could be patched
# nipy.tests.test_scripts.test_nipy_3_4d # ditto re.: `nipy_3_4d` script
doCheck = false;
src = pkgs.fetchurl {
url = "mirror://pypi/n/nipy/${name}.tar.gz";
sha256 = "1hnbn2i4fjxflaaz082s2c57hfp59jfra1zayz1iras5p2dy21nr";
};
buildInputs = stdenv.lib.optional doCheck [ self.nose ];
propagatedBuildInputs = with self; [
matplotlib
nibabel
numpy
scipy
sympy
];
meta = {
homepage = http://nipy.org/nipy/;
description = "Software for structural and functional neuroimaging analysis";
license = licenses.bsd3;
};
};
nipy = callPackage ../development/python-modules/nipy { };
nipype = callPackage ../development/python-modules/nipype {
inherit (pkgs) which;